Citrus Sinensis ID: 007684

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590---
Protein Sequence
MLRGNFLTPSLIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARVKSLHSLFSN
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEcccccccccccccccEEccccHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHcccccccEEEEcHHccccccccccHHHHHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHHHcccEEccccccccHHHHHHHHHHcccEEEccccccccccccccccccHHHHcccEEEEEEEcccEEEEcccccEEEEEEcccccEEEcccccccccccccEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHccccHHHHHHHcccccccccccccHHHHHccccccccccccccHHHHHHHEEcccccEEEcccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHccccccHHHHHHHHHccccccccccccccccEEEEEEEEcccccccccccEEEEEcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEEccHHHEcccccccHHHHHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHHHHHcccEEEccccccccHHHHHHHHHcccEEEccHHHHHHHHHHccccHHHHHHHccEEEEEEEccccEEEccccccEEEEEcccccEEEEEEcccccccccEEEEEEccccccHcccccc
Coil and Loop (DISEMBL)
mlrgnfltpslirtspfltflskislplmhqsnchtyRSLLCWHmhsftkpitdikqnrfsadLTTGLCTLAFSkkstvnessapntgtmsnkskkkarrespegvlrHKLDMCSKRGDVFEALRLYDdarsngitlsQHHYNVLLYVCSckcgsessengdrendsnlglkRGFEIFQQMitdkvdpneatfTSVARLAVAKEDPEMAFDLVKQMksfgippklrsygpalfgfcklgntdkayevdahmgesgvvpeepeLSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGvlnwdvskvregivrggggwhgqgwlgsgkwrvertqidengvccscnerlvcididpretenFASSLSNLACQREVRSDFNKFQEwlgrhgpfdavidganvglvnqhnfsFYQLNTVVNRLrqmspskrmplvilhkgrvsggpaqipknkklLDIWRdggalyttppgsnddwyWLYATVNCKSLLVTNDEMRDHLFQLLGtsffprwkekhQIRLSvsrdglnllmpppysiviqesengswhvpvitgddleapRQWLCATRARVKSLHSLFSN
Flexible Loop (DISEMBL)
mlrgnfltpslirtspFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAfskkstvnessapntgtmsnkskkkarrespegvlrhkldmcskRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSengdrendsnlgLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVrggggwhgqgwlgsgKWRVERTQIdengvccscneRLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKgrvsggpaqipknkKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGtsffprwkEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARVKSLHSLFSN
Low Complexity Region (SEG)
MLRGNFLTPSLIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREgivrggggwhgqgwlgsgKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARVKSLHSLFSN
Disordered region (IsUnstruct)
*****FLTPSLIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAF************************************KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG****************LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG***V******LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQ******MPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARVK********
Disordered Region (DISOPRED)
MLRGNF*TPSLIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS***********LLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARVKS*HSLFS*
Disordered Region (DISEMBL)
MLRGNFLTPSLIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAFSKK****************************GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKC************DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARVKSLHSLFSN
Disordered Region (DISPRO)
*LRGNFLTPSLIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAFSKK***************N******RRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARVK********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLRGNFLTPSLIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARVKSLHSLFSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	593	2.2.26 [Sep-21-2011]
Q66GI4	572	Proteinaceous RNase P 1,	yes	no	0.957	0.993	0.632	0.0
F4JKB6	576	Proteinaceous RNase P 3 O	no	no	0.790	0.814	0.465	1e-127
Q680B9	528	Proteinaceous RNase P 2 O	no	no	0.812	0.912	0.455	1e-118
B5DF07	587	Mitochondrial ribonucleas	yes	no	0.750	0.758	0.220	8e-14
Q8JZY4	584	Mitochondrial ribonucleas	yes	no	0.679	0.690	0.218	2e-13
O15091	583	Mitochondrial ribonucleas	yes	no	0.715	0.727	0.214	4e-13
Q9SR00	602	Pentatricopeptide repeat-	no	no	0.278	0.274	0.270	4e-08
Q9ZQF1	627	Pentatricopeptide repeat-	no	no	0.323	0.306	0.230	7e-08
O04491	607	Putative pentatricopeptid	no	no	0.237	0.232	0.295	1e-07
Q9SZ10	521	Pentatricopeptide repeat-	no	no	0.225	0.257	0.257	2e-07

>sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/587 (63%), Positives = 449/587 (76%), Gaps = 19/587 (3%)

Query: 1   MLRGNFLTPSLIRTS-PFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR 59
           MLR    TPS  R   P    + K+    +H      +R    +H     K   D  +  
Sbjct: 1   MLRLTCFTPSFSRACCPLFAMMLKVPSVHLHHPRFSPFRF---YHTSLLVKGTRD--RRL 55

Query: 60  FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD 119
              + +  LCTL  +      +S+A  +  +S K+KKKA ++SPE +L+ KLDMCSK+GD
Sbjct: 56  ILVERSRHLCTLPLA---AAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGD 112

Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIF 178
           V EALRLYD+AR NG+ LSQ+HYNVLLYVCS  +  +ESS N         GL RGF+IF
Sbjct: 113 VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP--------GLSRGFDIF 164

Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
           +QMI DKV PNEATFT+ ARLAVAK+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+ 
Sbjct: 165 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 224

Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298
           G+ DKAYEVDAHM ES VVPEEPEL+ALLK+S+D K  DKVY+ L RLR LVRQVS+STF
Sbjct: 225 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 284

Query: 299 KIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVC 358
            +IE+WF S  A + GV  WDV K+R+ +V GGGGWHGQGWLG+GKW V+RT++DENGVC
Sbjct: 285 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVC 344

Query: 359 CSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVG 418
             C E+LVCIDI+P ETE FA+SL+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+G
Sbjct: 345 KCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMG 404

Query: 419 LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGA 478
           LVNQ +FSF+QLN  V R +Q+SPSKR+PLVILHK RV+GGPA  PKN+ LL+ W++ GA
Sbjct: 405 LVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGA 464

Query: 479 LYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR- 537
           LY TPPGSNDDWYWLYA V+CK LLVTNDEMRDHLFQLLG SFFPRWKEKHQ+R+SV+R 
Sbjct: 465 LYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTRE 524

Query: 538 DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
           DGL L MPPPYSIVIQESE+G+WHVP+   DDL+  RQWLCA R++ 
Sbjct: 525 DGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSKT 571

Arabidopsis thaliana (taxid: 3702)

>sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1

 Score =  456 bits (1174), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/494 (46%), Positives = 313/494 (63%), Gaps = 25/494 (5%)

Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
           E  L   L  CSKR D+  AL LYD A  S+ I L+Q H+  LLY+CS      S +   
Sbjct: 89  EKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSAFISDPSLQT-- 146

Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-- 220
                 + + RGF+IF +M++  + PNE++ T+VARLA AK D + AF LVK + + G  
Sbjct: 147 ------VAIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGV 200

Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
             P+LR+Y PAL  FC     +K YEV+ HM  SG+V EE E+SALLK+S    + +KVY
Sbjct: 201 SVPRLRTYAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVY 260

Query: 281 EILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVREGIVRGGGGWHGQG 338
             L +LR  V  VSE T K IE+WF  V A+E+    +  D+  +R  +++ GGGWHG G
Sbjct: 261 RYLQKLRECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLG 320

Query: 339 WLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVR------ 392
           W+G GKW V++  +   G C SC+E L C+D +  ETE+F +SL  LA +R+ +      
Sbjct: 321 WVGEGKWIVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEP 380

Query: 393 -SDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMP 447
            +DF++FQEWL +HG ++A++DGAN+GL  Q+     FS  QL  VV  L   S SK+ P
Sbjct: 381 MADFSEFQEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQP 440

Query: 448 LVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTND 507
           L++LHK RV+    + P ++ L++ W +   LY TPPGSNDDWYWLYA    K LLVTND
Sbjct: 441 LILLHKKRVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTND 499

Query: 508 EMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITG 567
           EMRDH+F+LL  SFF +WKE+HQ+R +  +  L L MPPP+S+VIQESE GSWHVP+ + 
Sbjct: 500 EMRDHIFELLSNSFFQKWKERHQVRFTFVKGCLKLEMPPPFSVVIQESEKGSWHVPITSQ 559

Query: 568 DDLEAPRQWLCATR 581
           D  E+ R W+C TR
Sbjct: 560 DKEESLRSWMCITR 573

Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1

 Score =  426 bits (1096), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/509 (45%), Positives = 321/509 (63%), Gaps = 27/509 (5%)

Query: 92  NKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCS 150
           NK KK +R  +PE  L   L+ CSK  D+  AL LYD A  S+ + LSQ H+  LLY+CS
Sbjct: 20  NKKKKVSR--NPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLCS 77

Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
                 S +         L + RGFEIF +M++  + PNEA+ TSVARLA AK + + AF
Sbjct: 78  ASITDISLQY--------LAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAF 129

Query: 211 DLVKQMKSFG--IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
            +VK+  S G    P+LR+Y PAL  FC+    +K YEV+ HM  +G+  EE E+SALLK
Sbjct: 130 KVVKEFVSVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLK 189

Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVREG 326
           +S    + +KVY  LH+LR  V  VSE T KIIE+WF    A E+G   +  DV  +RE 
Sbjct: 190 VSAATGRENKVYRYLHKLREYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREA 249

Query: 327 IVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLA 386
           ++  GGGWHG GW+G GKW V++  +   G C SC+E+L C+D +  ET+ F  SL  LA
Sbjct: 250 VLNNGGGWHGHGWVGEGKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALA 309

Query: 387 CQREVRSD-------FNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVN 435
             R+ + +       F++FQ+WL +HG ++A++DGAN+GL  Q+    +FS  QL +V+ 
Sbjct: 310 MDRKTKMNSCETNVVFSEFQDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMK 369

Query: 436 RLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYA 495
            L + S + + PL++LHK RV     + P ++ L++ W   G LY TPPGSNDDWYWLYA
Sbjct: 370 ELYRESGNNKWPLILLHKRRVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYA 428

Query: 496 TVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQES 555
               K LLVTNDEMRDH+F+LLG++FF +WKE+HQ+R +  +  L L MP P+S+VIQES
Sbjct: 429 AAKLKCLLVTNDEMRDHIFELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQES 488

Query: 556 ENGSWHVPVITGDDLEAPRQWLCATRARV 584
           E GSWH PV   ++ E+ R W+C +R  +
Sbjct: 489 EKGSWHFPVSCENNEESSRTWMCISRQSI 517

Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|B5DF07|MRRP3_RAT Mitochondrial ribonuclease P protein 3 OS=Rattus norvegicus GN=Mrpp3 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 117/531 (22%), Positives = 205/531 (38%), Gaps = 86/531 (16%)

Query: 76  KSTVNESSAPNTGTMSNKSKK--KARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN 133
           KSTV   + P      +K K+  K +    + V+      CS   DV ++L  +  A++N
Sbjct: 112 KSTVQLPTKPLNSEEWDKLKEDFKGKASFEDFVISQMTRSCSSV-DVAKSLLAWVAAKNN 170

Query: 134 GITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT 192
           GI      YN+L+ Y+  C    ++SE  D              +++ M           
Sbjct: 171 GIV----GYNLLVKYLYLCVFHKQTSEVID--------------VYEIMKAKYKSLESGG 212

Query: 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252
           +T + R  +  +    A  L++ +K   +P K ++YG  + G     + + A+ +   + 
Sbjct: 213 YTLLIRGLIHSDRWREALLLLEDIKKVMVPSK-KNYGDCIQGALLHQDVNVAWSLYQELV 271

Query: 253 ESGVVPEEPELSALL---KLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309
              ++P    L A     K   D +  +++ +IL  LR       ES    I+ WF+S+ 
Sbjct: 272 GHNLIPLLETLKAFFDHGKDMNDDQYSNQLLDILLYLRNNQLYPGESFAHSIKTWFESIP 331

Query: 310 AAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID 369
             +                                W+ + T I ++G C SC   +  I 
Sbjct: 332 GRQ--------------------------------WKGQFTTIQKSGQCSSCGRAIESIH 359

Query: 370 IDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH 423
           + P E E    ++           ++    +  +F+ ++    PFD VIDG NV  +   
Sbjct: 360 LSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERFVKSCPPFDIVIDGLNVAKM--- 416

Query: 424 NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTP 483
              F +     N L  +S   +  L +L  GR           K  ++  R     +   
Sbjct: 417 ---FPKGRESQNLLGIVSQLAQQNLQLLVLGRKHMLRPSSQWRKDEMEQVRKQAHCFFAD 473

Query: 484 PGSNDDWYWLYATVN----CKSLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVS 536
             S DD + LYAT+N    CK   +T D +RDH   L        F +W++ HQ+ ++  
Sbjct: 474 NISEDDPFLLYATLNSGSHCK--FITKDLLRDHKACLPDARAQRLFFKWQQGHQLAITKG 531

Query: 537 --RDGLNLLMPPPYSIVIQESENGSWHVP----VITGDDLEAPRQWLCATR 581
             +  L       Y  V+Q + + +WH+P    ++     E P +WLC  R
Sbjct: 532 FLKSKLTFQHILSYDTVVQTTGD-TWHIPYDEDLVPRSSCEVPTKWLCLQR 581

Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends.

Rattus norvegicus (taxid: 10116)

>sp|Q8JZY4|MRRP3_MOUSE Mitochondrial ribonuclease P protein 3 OS=Mus musculus GN=Kiaa0391 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 106/486 (21%), Positives = 184/486 (37%), Gaps = 83/486 (17%)

Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
           DV ++L  +  A++NGI      YN+L+ Y+  C    ++SE  D              +
Sbjct: 153 DVAKSLLAWVAAKNNGIV----GYNLLVKYLYLCVFHKQTSEVID--------------V 194

Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
           ++ M           +T + R  +  +    +  L++ +K   +P K ++YG  + G   
Sbjct: 195 YEIMKAKYKSLESGGYTLLIRGLIHSDRWRESLLLLEDIKKVMVPSK-KNYGDCIQGALL 253

Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
             + + A+ +   +    ++P    L A      D       DK+ +IL  LR       
Sbjct: 254 HQDVNTAWNLYQELIGHNLIPPLETLKAFFDYGKDINDDHYSDKLLDILLYLRNNQLYPG 313

Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
           ES    I+ WF+S+   +                                W+ + T I +
Sbjct: 314 ESFAHSIKTWFESIPGRQ--------------------------------WKGQFTTIQK 341

Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
           +G C  C   +  I + P E E     +           ++    +  +F+ ++    PF
Sbjct: 342 SGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFESFVNSCPPF 401

Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
           D VIDG NV  +      F +     N L  +S   +  L +L  GR           K+
Sbjct: 402 DIVIDGLNVAKM------FPKGRESQNLLGVVSQLAQQNLQLLVLGRKHMLRPSSQWRKE 455

Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATVN----CKSLLVTNDEMRDH---LFQLLGTSF 521
            ++  R     +     S DD + LYAT+N    CK   +T D +RDH   L        
Sbjct: 456 EMEQVRKQAHCFFADNISEDDPFLLYATLNSGNHCK--FITKDLLRDHKACLPDARTQRL 513

Query: 522 FPRWKEKHQIRL--SVSRDGLNLLMPPPYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
           F +W++ HQ+ +     +  L       Y  V+Q + + SWH+P    ++     E P +
Sbjct: 514 FFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRTGD-SWHIPYDEDLVQRSSCEVPTK 572

Query: 576 WLCATR 581
           WLC  R
Sbjct: 573 WLCLQR 578

Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends.

Mus musculus (taxid: 10090)

>sp|O15091|MRRP3_HUMAN Mitochondrial ribonuclease P protein 3 OS=Homo sapiens GN=KIAA0391 PE=1 SV=2

 Score = 77.0 bits (188), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 109/507 (21%), Positives = 199/507 (39%), Gaps = 83/507 (16%)

Query: 95  KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
           K+   + S E  +  ++  C    DV ++L  +  A++NGI      Y++L+ Y+  C  
Sbjct: 132 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 187

Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
             ++SE  D              +F+ M           ++ + R  +  +    A  L+
Sbjct: 188 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 233

Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
           + +K   I P  ++Y   + G     + + A+ +   +    +VP    L A      D 
Sbjct: 234 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 292

Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
           K     +K+ +IL  LR       ES    I+ WF+SV                      
Sbjct: 293 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESVP--------------------- 331

Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
           G  W GQ            T + ++G C  C + +  I + P E E     +        
Sbjct: 332 GKQWKGQF-----------TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGG 380

Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
              ++    +  +F+ ++    PFD VIDG NV  +         L  VV++L +    +
Sbjct: 381 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----R 436

Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
            + L++L +  +    +Q  +++  ++  +   + +     S DD + LYAT+    +C+
Sbjct: 437 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 494

Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
              +T D MRDH   L        F +W++ HQ+ +     G  L       Y  V+Q +
Sbjct: 495 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTT 552

Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
            + SWH+P    ++     E P +WLC
Sbjct: 553 GD-SWHIPYDEDLVERCSCEVPTKWLC 578

Functions in mitochondrial tRNA maturation. Part of mitochondrial ribonuclease P, an enzyme composed of MRPP1/RG9MTD1, MRPP2/HSD17B10 and MRPP3/KIAA0391, which cleaves tRNA molecules in their 5'-ends.

Homo sapiens (taxid: 9606)

>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 27/192 (14%)

Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK----- 172
           G V EAL+L D+  S G+      YN ++    CK   E   +   E   NL LK     
Sbjct: 242 GGVDEALKLMDEMLSRGLKPDMFTYNTIIR-GMCK---EGMVDRAFEMVRNLELKGCEPD 297

Query: 173 ------------------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
                              G ++  +M ++K DPN  T++ +          E A +L+K
Sbjct: 298 VISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK 357

Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
            MK  G+ P   SY P +  FC+ G  D A E    M   G +P+    + +L       
Sbjct: 358 LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNG 417

Query: 275 KVDKVYEILHRL 286
           K D+  EI  +L
Sbjct: 418 KADQALEIFGKL 429

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 25/217 (11%)

Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG----- 170
           + GD  +A  L+D+  ++GI  +Q  Y  L+YV    C    +   D   +  +G     
Sbjct: 409 QHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVL---CRKNKTREADELFEKVVGKGMKP 465

Query: 171 -----------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
                            + R F + ++M    ++P++ T+  + R    +   E A +L+
Sbjct: 466 DLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELM 525

Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
            +MK  GI P   SY   + G+ K G+T  A+ V   M   G  P     +ALLK     
Sbjct: 526 GEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKN 585

Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA 310
           ++ +   E+L  +++     ++S+F  + +   ++DA
Sbjct: 586 QEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDA 622

Arabidopsis thaliana (taxid: 3702)

>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 18/159 (11%)

Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNL 169
           +D   + GDV  AL +  +   NGI L +  ++ L  VC  CK G        R  D+  
Sbjct: 422 IDGFCRGGDVETALEIRKEMDQNGIELDRVGFSAL--VCGMCKEG--------RVIDAER 471

Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
            L+       +M+   + P++ T+T +      K D +  F L+K+M+S G  P + +Y 
Sbjct: 472 ALR-------EMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYN 524

Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
             L G CKLG    A  +   M   GVVP++   + LL+
Sbjct: 525 VLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLE 563

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
           + L+   ++F +M    V PN  T+ ++      + D EMAF   + M   GI   + +Y
Sbjct: 322 MKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTY 381

Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
              +FG CK   T KA +    + +  +VP     SAL+      K  D+ +E+    ++
Sbjct: 382 NALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFEL---YKS 438

Query: 289 LVR---QVSESTFKIIEDWF 305
           ++R     +E TF ++   F
Sbjct: 439 MIRSGCHPNEQTFNMLVSAF 458

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	593
255570201	589	multidrug resistance pump, putative [Ric	0.986	0.993	0.696	0.0
225447818	526	PREDICTED: pentatricopeptide repeat-cont	0.863	0.973	0.737	0.0
225462213	895	PREDICTED: pentatricopeptide repeat-cont	0.940	0.623	0.666	0.0
224077472	516	predicted protein [Populus trichocarpa]	0.853	0.980	0.727	0.0
449449619	588	PREDICTED: proteinaceous RNase P 1, chlo	0.952	0.960	0.623	0.0
224134767	486	predicted protein [Populus trichocarpa]	0.812	0.991	0.743	0.0
30685224	572	proteinaceous RNase P 1 [Arabidopsis tha	0.957	0.993	0.632	0.0
20259520	572	unknown protein [Arabidopsis thaliana]	0.957	0.993	0.632	0.0
297826669	572	pentatricopeptide repeat-containing prot	0.957	0.993	0.630	0.0
406855803	501	Chain A, Crystal Structure Of Proteinace	0.831	0.984	0.699	0.0

>gi|255570201|ref|XP_002526061.1| multidrug resistance pump, putative [Ricinus communis] gi|223534642|gb|EEF36338.1| multidrug resistance pump, putative [Ricinus communis]

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/586 (69%), Positives = 470/586 (80%), Gaps = 1/586 (0%)

Query: 1   MLRGNFLTPSLIRTSPFLTFLSKISLPLMHQSNCHTY-RSLLCWHMHSFTKPITDIKQNR 59
           MLRG+   PSL R SP  +F +KI      Q+N HT  R  L +H + F KP+ +I+ +R
Sbjct: 1   MLRGSSFAPSLNRASPLFSFFTKIPFFSSFQNNFHTIRRPFLHYHYYVFPKPVCNIQASR 60

Query: 60  FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD 119
           F  +     C+ A S K  ++ESSA     +SNK+KKKAR+ESPEGVLR K+D CSK G+
Sbjct: 61  FCMERRVQFCSSALSAKPQIHESSALAAKKVSNKAKKKARQESPEGVLRSKIDNCSKHGN 120

Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
           + EALRLYD+AR NG+ L+QHHYNVLLY+CS     E   NG  E  SN+  KRGFEIFQ
Sbjct: 121 LVEALRLYDEARINGVQLNQHHYNVLLYLCSSGSSVELGGNGANEKASNMQFKRGFEIFQ 180

Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
           QM+ DKV PNEATFT+ ARLA+A EDPEMAFDL+KQMK F I PKLRSYGPALFGFCK G
Sbjct: 181 QMVIDKVPPNEATFTNAARLAIAMEDPEMAFDLIKQMKCFDILPKLRSYGPALFGFCKKG 240

Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
             D+AY VDAHM ESGV+PEEPELSALLKLSVD K+ DKVYE+LHRLR  VRQV+E+T  
Sbjct: 241 MADRAYAVDAHMAESGVMPEEPELSALLKLSVDIKRADKVYEMLHRLRATVRQVTETTID 300

Query: 300 IIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCC 359
           IIE WF S DA++IG   WDVSKVREG+VRGGGGWHGQGWLGSG+WRV RTQID   VC 
Sbjct: 301 IIEAWFKSEDASKIGEEKWDVSKVREGVVRGGGGWHGQGWLGSGQWRVVRTQIDAKAVCN 360

Query: 360 SCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGL 419
           SC+E+LVCIDIDP ETENFA+SL+NLACQREV++DF +FQEWL +HGPFDAVIDGAN+GL
Sbjct: 361 SCSEKLVCIDIDPSETENFATSLTNLACQREVKADFVRFQEWLQKHGPFDAVIDGANLGL 420

Query: 420 VNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGAL 479
           +NQ NFSF QLNTVV++LRQMSPSKR+PL+ILH+ RV+GGPAQ P N KLL+ W+  GAL
Sbjct: 421 INQTNFSFRQLNTVVSKLRQMSPSKRLPLIILHRSRVTGGPAQNPNNMKLLEFWKKSGAL 480

Query: 480 YTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDG 539
           Y TP GSNDDWYWLYA V+C  LLVTNDEMRDHLFQLLGTSFFPRWKEKHQ+RLSVSR G
Sbjct: 481 YATPTGSNDDWYWLYAAVSCNCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLSVSRSG 540

Query: 540 LNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARVK 585
           + L MPPPYSIVIQESENGSWHVP I+ DDLE PRQWLCA+R R K
Sbjct: 541 IALHMPPPYSIVIQESENGSWHVPTISEDDLETPRQWLCASRTRNK 586

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447818|ref|XP_002267905.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/518 (73%), Positives = 435/518 (83%), Gaps = 6/518 (1%)

Query: 71  LAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA 130
           LA S  +     S+    TMSNK++KKARRESPEGVLR KLDMCSKRGDV EALRLYD+A
Sbjct: 10  LALSATNKYIPESSAVAETMSNKARKKARRESPEGVLRFKLDMCSKRGDVVEALRLYDEA 69

Query: 131 RSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE 190
           RS G+ LSQHHYNVLLY+CSC     S  NGD EN  NL LKRGFEIF+QM  D ++PNE
Sbjct: 70  RSRGVPLSQHHYNVLLYLCSC-----SGSNGD-ENVVNLALKRGFEIFKQMGVDGIEPNE 123

Query: 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAH 250
           ATFTS ARLA A EDPEMAF+LVKQMKS GIPPKLRSYGP LFGFCK G+ D+AYEVDAH
Sbjct: 124 ATFTSAARLACAMEDPEMAFNLVKQMKSCGIPPKLRSYGPPLFGFCKKGDADRAYEVDAH 183

Query: 251 MGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA 310
           M ESGVV EEPEL ALL LSV++++VD+VYE++HRLR  VRQVSEST +++E WF+S DA
Sbjct: 184 MMESGVVAEEPELCALLGLSVESRRVDRVYEMVHRLRASVRQVSESTAEVVERWFNSEDA 243

Query: 311 AEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDI 370
           A +G  NWDV KVREG+V+GGGGWHGQGWLG GKW+V RT++DE GVC SC E+LVCIDI
Sbjct: 244 AGVGEENWDVGKVREGVVKGGGGWHGQGWLGKGKWKVVRTEMDEAGVCQSCGEKLVCIDI 303

Query: 371 DPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQL 430
           DPRETENFASSL+ LACQREV++DF +FQEWL RHGPFDAV+DGANV L+NQ +FSF++L
Sbjct: 304 DPRETENFASSLTKLACQREVKADFVQFQEWLQRHGPFDAVVDGANVSLINQKSFSFFEL 363

Query: 431 NTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDW 490
           N+VVNRLRQ+SPSKR+PLVILH+ RV+GGPAQ P NKKL++ W+  GALY TP GSNDDW
Sbjct: 364 NSVVNRLRQISPSKRLPLVILHRSRVTGGPAQNPNNKKLIESWKKSGALYATPAGSNDDW 423

Query: 491 YWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSI 550
           YWLYA VNC  LLVTNDEMRDHLFQLLGTSFFPRWKEKHQ+RL+++R G  L MPPPYSI
Sbjct: 424 YWLYAAVNCNCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTITRRGPVLHMPPPYSI 483

Query: 551 VIQESENGSWHVPVITGDDLEAPRQWLCATRARVKSLH 588
           VIQESE GSWHVP +TGDDLE PRQWLCATR R    H
Sbjct: 484 VIQESEQGSWHVPTVTGDDLETPRQWLCATRTRKNHRH 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462213|ref|XP_002269315.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera]

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/575 (66%), Positives = 446/575 (77%), Gaps = 17/575 (2%)

Query: 15  SPFLTFLSKISL-PLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAF 73
           +P L  +    L PL+H           C H H      +   ++R   + +     LA 
Sbjct: 332 TPILCHVGHTRLRPLLHG----------CSHHHFKPTTYSPYIKDRIFMNKSAHFSNLAL 381

Query: 74  SKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN 133
           S  +     S+    TMSNK++KKARRESPEGVLR KLDMCSKRGDV EALRLYD+ARS 
Sbjct: 382 SATNKYIPESSAAAKTMSNKARKKARRESPEGVLRFKLDMCSKRGDVVEALRLYDEARSL 441

Query: 134 GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF 193
           G+ LSQH+YNVLLY+CSC     S  NGD EN  NL LKRGFEIF+QM  D ++PNEATF
Sbjct: 442 GVPLSQHNYNVLLYLCSC-----SGSNGD-ENVVNLALKRGFEIFKQMGVDGIEPNEATF 495

Query: 194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE 253
           TS ARLA A EDPEMAF+LVKQMKS GIPPKLRSYGP LFGFCK G+ ++AYEVDAHM E
Sbjct: 496 TSAARLACAMEDPEMAFNLVKQMKSCGIPPKLRSYGPPLFGFCKKGDANRAYEVDAHMVE 555

Query: 254 SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEI 313
           SGVV EEPEL ALL LSV+++ VD+VYE++HRLR  VRQVSEST +++E WF+S DAA +
Sbjct: 556 SGVVAEEPELCALLGLSVESRWVDQVYEMMHRLRASVRQVSESTAEVVERWFNSEDAAGV 615

Query: 314 GVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPR 373
           G  NWDV KVREG+V+GGGGWHGQGWLG GKW+V RT++DE GVC SC E+LV IDIDPR
Sbjct: 616 GEENWDVGKVREGVVKGGGGWHGQGWLGKGKWKVGRTEMDEAGVCQSCGEKLVGIDIDPR 675

Query: 374 ETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTV 433
           ETENFASSL+ LACQREV++DF +FQEWL  HGPFDAV+DGANV L+NQ +FSF++LN+V
Sbjct: 676 ETENFASSLTKLACQREVKADFVQFQEWLQWHGPFDAVVDGANVSLINQKSFSFFELNSV 735

Query: 434 VNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWL 493
           VN LRQ+SPSK++PLVILH+ RV+GGPAQ P N+KL+  W+  GALY TP GSNDDWYWL
Sbjct: 736 VNCLRQISPSKQLPLVILHRSRVTGGPAQNPNNEKLIQSWKKSGALYATPAGSNDDWYWL 795

Query: 494 YATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQ 553
           YA VN   LLVTNDEMRDHLFQLLGTSFFPRWKEKHQ+RL+++R G  L MPPPYSIVIQ
Sbjct: 796 YAAVNGNCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTMTRRGPVLHMPPPYSIVIQ 855

Query: 554 ESENGSWHVPVITGDDLEAPRQWLCATRARVKSLH 588
           ESE GSWHVP + GDDLE PRQWLCATR R    H
Sbjct: 856 ESEQGSWHVPTVIGDDLETPRQWLCATRTRKNHRH 890

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077472|ref|XP_002305261.1| predicted protein [Populus trichocarpa] gi|222848225|gb|EEE85772.1| predicted protein [Populus trichocarpa]

 Score =  734 bits (1896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/514 (72%), Positives = 412/514 (80%), Gaps = 8/514 (1%)

Query: 68  LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLY 127
            C  A S  S  +E  A     +S + KKKARR++PEGVLR KLDMCSK GDV E LRLY
Sbjct: 7   FCNSAISATSQSDE-KAVGGNVVSKRLKKKARRDAPEGVLRFKLDMCSKVGDVVEGLRLY 65

Query: 128 DDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD 187
           D+AR NG+ L+QHHYNV+LY+CS   G    ENG   +D  L  KRGFEIFQQMI DKV 
Sbjct: 66  DEARRNGVELNQHHYNVMLYLCSQNRG----ENG---SDLKLACKRGFEIFQQMIIDKVP 118

Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
           PNEATFT+ ARLA   EDPEMAFDLVKQMK FGI PKLRSYGP LFGFCK G  DKAYEV
Sbjct: 119 PNEATFTNAARLASVMEDPEMAFDLVKQMKGFGIMPKLRSYGPPLFGFCKKGMVDKAYEV 178

Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDS 307
           DAHM ESGVV EEPELS+LLKLS D    DK+YE+LHRLRT VRQV EST  +IEDWF S
Sbjct: 179 DAHMIESGVVAEEPELSSLLKLSADVNNADKMYELLHRLRTSVRQVMESTVGVIEDWFKS 238

Query: 308 VDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVC 367
             AA+IG  +WDV KV+EG+VRGGGGWHGQGWLG G+WRV RTQ+D+ GVC SC ERL C
Sbjct: 239 EHAAKIGKGDWDVIKVKEGVVRGGGGWHGQGWLGHGQWRVVRTQMDKKGVCGSCGERLAC 298

Query: 368 IDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSF 427
           IDIDPRETENFA SLS LA  REV++DF +FQEWL +HGPFDAV+DGANV L+NQ  F+F
Sbjct: 299 IDIDPRETENFAISLSKLAFGREVKADFIQFQEWLQQHGPFDAVVDGANVSLINQQTFNF 358

Query: 428 YQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSN 487
            QLN VVNRL  MSPSK+ PLVILHK RV+GGPAQ P NKKLL+ W++ GALY TP GSN
Sbjct: 359 SQLNNVVNRLHDMSPSKKFPLVILHKSRVNGGPAQSPYNKKLLERWKNSGALYATPAGSN 418

Query: 488 DDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPP 547
           DDWYWLYA V+CK LLVTNDEMRDHLFQLLGTSFFPRWKEKHQ+RLSVSR G+ L MPPP
Sbjct: 419 DDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLSVSRSGIALHMPPP 478

Query: 548 YSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
           YSIVIQESENG WHVP  TGDDLE PRQWLCATR
Sbjct: 479 YSIVIQESENGGWHVPTTTGDDLETPRQWLCATR 512

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449619|ref|XP_004142562.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus]

 Score =  721 bits (1862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/581 (62%), Positives = 439/581 (75%), Gaps = 16/581 (2%)

Query: 7   LTPSLIRTSPFLTFLSKISL-----PLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR-F 60
           L  S  +TSPF  + +KI +     PL      ++ RS++      F+K I     N  F
Sbjct: 8   LMSSFAKTSPFFLYFTKIPVFPCQNPLRASLRTYSCRSIV------FSKNILKYSCNSYF 61

Query: 61  SADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDV 120
           S      LC +A +  S+VN SS  ++  +S+K +KKA +E+PE VL++ LDMCSK G V
Sbjct: 62  SIHTVRYLCNVASAATSSVNASSTSSSNKVSHKLRKKALKEAPESVLKYNLDMCSKYGQV 121

Query: 121 FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
            +AL LYD+ARSNGI L+QHHYNVLLY+CS     E+S      N S++ L RGFEIFQQ
Sbjct: 122 VKALELYDEARSNGIQLNQHHYNVLLYLCSSPSLLETS---GANNLSSVVLSRGFEIFQQ 178

Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
           M+TDKV PNEATFTS+AR+A A++DPEMAF LVKQMK + I P+LRSYGPALFGFC+   
Sbjct: 179 MMTDKVSPNEATFTSLARIAAARDDPEMAFSLVKQMKDYHIAPRLRSYGPALFGFCRKLM 238

Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI 300
             +AYEVD+HM  S V PEE ELSALLKLS D KK DKVYE+LHRLR  VRQVSE T K+
Sbjct: 239 PKEAYEVDSHMLASAVEPEELELSALLKLSSDVKKADKVYELLHRLRRTVRQVSEPTAKV 298

Query: 301 IEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCS 360
           IEDWF+S  A+E+G  +WDV KVRE IVR GGGWHG+GWLGSGKW++ RT ID+NGVC S
Sbjct: 299 IEDWFNSESASEVGKKHWDVDKVRECIVRRGGGWHGEGWLGSGKWKLVRTGIDDNGVCHS 358

Query: 361 CNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLV 420
           C ++LVCIDIDP+ETE+FASSL+ LA QR V++DFN FQ WL +HGPFDAVIDGANVGLV
Sbjct: 359 CAQKLVCIDIDPKETEDFASSLTKLANQR-VKADFNNFQGWLEKHGPFDAVIDGANVGLV 417

Query: 421 NQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALY 480
           N+  F+F QL   V ++R++SPSK+MPL+ILHK R++ GPA+ P N KL++ W++ GALY
Sbjct: 418 NERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITDGPARNPNNMKLIETWKNCGALY 477

Query: 481 TTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGL 540
            TP   NDDWYWLYA V  K LL+TNDEMRDHLFQLLG +FFP+WKEKHQ+RLSVSR+GL
Sbjct: 478 ATPYSVNDDWYWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGL 537

Query: 541 NLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
            L MPP YSIVIQESENGS HVP  TGDDLE PR+WLCATR
Sbjct: 538 KLHMPPSYSIVIQESENGSLHVPTTTGDDLETPREWLCATR 578

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134767|ref|XP_002327484.1| predicted protein [Populus trichocarpa] gi|222836038|gb|EEE74459.1| predicted protein [Populus trichocarpa]

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/492 (74%), Positives = 404/492 (82%), Gaps = 10/492 (2%)

Query: 90  MSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC 149
           MS + KKKARRE+PEGVL+ KLD CSKRGDV E LRLYD+AR NG+ L+QHHYNVLLY+C
Sbjct: 1   MSLREKKKARREAPEGVLKFKLDTCSKRGDVVEGLRLYDEARKNGVELNQHHYNVLLYLC 60

Query: 150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMA 209
                   S+NG  EN S+L  K+GFEIFQQMI DKV PNEATFT+ ARLA A EDPEMA
Sbjct: 61  --------SQNGG-ENVSDL-RKQGFEIFQQMIIDKVPPNEATFTNAARLASAMEDPEMA 110

Query: 210 FDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
           FDLVKQMK FGI PKLRSYGP LFGFCK G  DKAYEVDAHM E GVV EEPELSALLK+
Sbjct: 111 FDLVKQMKGFGILPKLRSYGPPLFGFCKKGMADKAYEVDAHMIEYGVVAEEPELSALLKV 170

Query: 270 SVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVR 329
           S D    DKVYE+LHRLRT VRQ +EST  IIEDWF S  AA+ G  NWDV KV+EG+ R
Sbjct: 171 SADVNNADKVYELLHRLRTSVRQATESTVGIIEDWFKSKHAAKTGKENWDVRKVKEGVAR 230

Query: 330 GGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQR 389
           GGGGWHGQGWLG G+WRV RTQ+D+ GVC SC ERL CIDIDPRETE+FA SLS LA  R
Sbjct: 231 GGGGWHGQGWLGCGQWRVVRTQMDKEGVCGSCGERLACIDIDPRETEDFAISLSKLALGR 290

Query: 390 EVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLV 449
           EV++DF +FQ+WL RHGPFDAV+DGAN+ L+NQ  FSF QLN+VV+RL  MSPSK++PLV
Sbjct: 291 EVKADFIRFQDWLQRHGPFDAVVDGANLSLINQQTFSFSQLNSVVHRLHDMSPSKKLPLV 350

Query: 450 ILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEM 509
           ILHK RV+GGPAQ P NKKLL+ W++ GALY TP GSNDDWYWLYA V  K LLVTNDEM
Sbjct: 351 ILHKSRVTGGPAQSPYNKKLLERWKNSGALYVTPAGSNDDWYWLYAAVCYKCLLVTNDEM 410

Query: 510 RDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDD 569
           RDHLFQLLGTSFFPRWKEKHQ+RLSVSR G+ L MPPPYSIVIQESENGSWHVP  T DD
Sbjct: 411 RDHLFQLLGTSFFPRWKEKHQVRLSVSRSGIALQMPPPYSIVIQESENGSWHVPTTTNDD 470

Query: 570 LEAPRQWLCATR 581
           LE PRQWLCATR
Sbjct: 471 LETPRQWLCATR 482

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685224|ref|NP_850186.1| proteinaceous RNase P 1 [Arabidopsis thaliana] gi|75115346|sp|Q66GI4.1|PRRP1_ARATH RecName: Full=Proteinaceous RNase P 1, chloroplastic/mitochondrial; AltName: Full=Pentatricopeptide repeat-containing protein At2g32230; Flags: Precursor gi|51536606|gb|AAU05541.1| At2g32230 [Arabidopsis thaliana] gi|330253558|gb|AEC08652.1| proteinaceous RNase P 1 [Arabidopsis thaliana]

 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/587 (63%), Positives = 449/587 (76%), Gaps = 19/587 (3%)

Query: 1   MLRGNFLTPSLIRTS-PFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR 59
           MLR    TPS  R   P    + K+    +H      +R    +H     K   D  +  
Sbjct: 1   MLRLTCFTPSFSRACCPLFAMMLKVPSVHLHHPRFSPFRF---YHTSLLVKGTRD--RRL 55

Query: 60  FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD 119
              + +  LCTL  +      +S+A  +  +S K+KKKA ++SPE +L+ KLDMCSK+GD
Sbjct: 56  ILVERSRHLCTLPLA---AAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGD 112

Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIF 178
           V EALRLYD+AR NG+ LSQ+HYNVLLYVCS  +  +ESS N         GL RGF+IF
Sbjct: 113 VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP--------GLSRGFDIF 164

Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
           +QMI DKV PNEATFT+ ARLAVAK+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+ 
Sbjct: 165 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 224

Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298
           G+ DKAYEVDAHM ES VVPEEPEL+ALLK+S+D K  DKVY+ L RLR LVRQVS+STF
Sbjct: 225 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 284

Query: 299 KIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVC 358
            +IE+WF S  A + GV  WDV K+R+ +V GGGGWHGQGWLG+GKW V+RT++DENGVC
Sbjct: 285 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVC 344

Query: 359 CSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVG 418
             C E+LVCIDI+P ETE FA+SL+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+G
Sbjct: 345 KCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMG 404

Query: 419 LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGA 478
           LVNQ +FSF+QLN  V R +Q+SPSKR+PLVILHK RV+GGPA  PKN+ LL+ W++ GA
Sbjct: 405 LVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGA 464

Query: 479 LYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR- 537
           LY TPPGSNDDWYWLYA V+CK LLVTNDEMRDHLFQLLG SFFPRWKEKHQ+R+SV+R 
Sbjct: 465 LYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTRE 524

Query: 538 DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
           DGL L MPPPYSIVIQESE+G+WHVP+   DDL+  RQWLCA R++ 
Sbjct: 525 DGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSKT 571

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20259520|gb|AAM13880.1| unknown protein [Arabidopsis thaliana]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/587 (63%), Positives = 448/587 (76%), Gaps = 19/587 (3%)

Query: 1   MLRGNFLTPSLIRTS-PFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR 59
           MLR    TPS  R   P    + K+    +H      +R    +H     K   D  +  
Sbjct: 1   MLRLTCFTPSFSRACCPLFAMMLKVPSVHLHHPRFSPFRF---YHTSLLVKGTRD--RRL 55

Query: 60  FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD 119
              + +  LCTL  +      +S+A  +  +S K+KKKA ++SPE +L+ KLDMCSK+GD
Sbjct: 56  ILVERSRHLCTLPLA---AAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGD 112

Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIF 178
           V EALRLYD+AR NG+ LSQ+HYNVLLYVCS  +  +ESS N         GL RGF+IF
Sbjct: 113 VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP--------GLSRGFDIF 164

Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
           +QMI DKV PNEATFT+ ARLAVAK+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+ 
Sbjct: 165 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 224

Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298
           G+ DKAYEVDAHM ES VVPEEPEL ALLK+S+D K  DKVY+ L RLR LVRQVS+STF
Sbjct: 225 GDADKAYEVDAHMVESEVVPEEPELVALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 284

Query: 299 KIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVC 358
            +IE+WF S  A + GV  WDV K+R+ +V GGGGWHGQGWLG+GKW V+RT++DENGVC
Sbjct: 285 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVC 344

Query: 359 CSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVG 418
             C E+LVCIDI+P ETE FA+SL+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+G
Sbjct: 345 KCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMG 404

Query: 419 LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGA 478
           LVNQ +FSF+QLN  V R +Q+SPSKR+PLVILHK RV+GGPA  PKN+ LL+ W++ GA
Sbjct: 405 LVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGA 464

Query: 479 LYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR- 537
           LY TPPGSNDDWYWLYA V+CK LLVTNDEMRDHLFQLLG SFFPRWKEKHQ+R+SV+R 
Sbjct: 465 LYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTRE 524

Query: 538 DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
           DGL L MPPPYSIVIQESE+G+WHVP+   DDL+  RQWLCA R++ 
Sbjct: 525 DGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSKT 571

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826669|ref|XP_002881217.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297327056|gb|EFH57476.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  707 bits (1824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/587 (63%), Positives = 446/587 (75%), Gaps = 19/587 (3%)

Query: 1   MLRGNFLTPSLIRTS-PFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR 59
           MLR    TP   R   P    + K+    +H      +RS   +H     K   D  +  
Sbjct: 1   MLRLTCFTPCFSRACCPLFAMMLKVPSVHIHHPRFSPFRS---YHTSLLVKGTRD--RRL 55

Query: 60  FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD 119
              + +  LCT+  +      +S+A  +  +S K+KKKA ++SPE +L+ KLDMCSK+GD
Sbjct: 56  ILVERSRHLCTMPLA---AAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGD 112

Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIF 178
           V EALRLYD+AR NG+ LSQ+HYNVLLYVCS  +  +ESS N         GL RGF+IF
Sbjct: 113 VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP--------GLSRGFDIF 164

Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
           +QMI DKV PNEATFT+ ARLAVAK+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+ 
Sbjct: 165 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 224

Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298
           G+  KAYEVDAHM ES VVPEEPEL+ALLK+S+D K  DKVYE+L RLR LVRQVS+STF
Sbjct: 225 GDAGKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYEMLQRLRDLVRQVSKSTF 284

Query: 299 KIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVC 358
             IE+WF S  AA+ GV  WDV K+R+ +  GGGGWHGQGWLG+GKW V+RT++DENGVC
Sbjct: 285 DTIEEWFKSEAAAKAGVKKWDVKKIRDAVESGGGGWHGQGWLGTGKWNVKRTEMDENGVC 344

Query: 359 CSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVG 418
             C E+LVCIDI+P ETE FA+SL+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+G
Sbjct: 345 KCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMG 404

Query: 419 LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGA 478
           LVNQ +FSF+QLN  V R +Q+SPSKR+PLVILHK RV+GGPA  PKN+ LL+ W++ GA
Sbjct: 405 LVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGA 464

Query: 479 LYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR- 537
           LY TPPGSNDDWYWLYA V  K LLVTNDEMRDHLFQLLG SFFPRWKEKHQ+R+SVSR 
Sbjct: 465 LYATPPGSNDDWYWLYAAVTYKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVSRE 524

Query: 538 DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
           DGL L MPPPYSIVIQESE+G+WHVP+   DDL+  RQWLCA R++ 
Sbjct: 525 DGLTLHMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSKT 571

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|406855803|pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn gi|406855805|pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Ca

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/503 (69%), Positives = 419/503 (83%), Gaps = 10/503 (1%)

Query: 84  APNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYN 143
           A  +  +S K+KKKA ++SPE +L+ KLDMCSK+GDV EALRLYD+AR NG+ LSQ+HYN
Sbjct: 6   ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYN 65

Query: 144 VLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA 202
           VLLYVCS  +  +ESS N         GL RGF+IF+QMI DKV PNEATFT+ ARLAVA
Sbjct: 66  VLLYVCSLAEAATESSPNP--------GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA 117

Query: 203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262
           K+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+ G+ DKAYEVDAHM ES VVPEEPE
Sbjct: 118 KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177

Query: 263 LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSK 322
           L+ALLK+S+D K  DKVY+ L RLR LVRQVS+STF +IE+WF S  A + GV  WDV K
Sbjct: 178 LAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKK 237

Query: 323 VREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL 382
           +R+ +V GGGGWHGQGWLG+GKW V+RT++DENGVC  C E+LVCIDI+P ETE FA+SL
Sbjct: 238 IRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASL 297

Query: 383 SNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSP 442
           + LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+GLVNQ +FSF+QLN  V R +Q+SP
Sbjct: 298 TRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISP 357

Query: 443 SKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSL 502
           SKR+PLVILHK RV+GGPA  PKN+ LL+ W++ GALY TPPGSNDDWYWLYA V+CK L
Sbjct: 358 SKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCL 417

Query: 503 LVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DGLNLLMPPPYSIVIQESENGSWH 561
           LVTNDEMRDHLFQLLG SFFPRWKEKHQ+R+SV+R DGL L MPPPYSIVIQESE+G+WH
Sbjct: 418 LVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWH 477

Query: 562 VPVITGDDLEAPRQWLCATRARV 584
           VP+   DDL+  RQWLCA R++ 
Sbjct: 478 VPMSVEDDLQTSRQWLCAKRSKT 500

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	593
TAIR|locus:2045432	572	PRORP1 "proteinaceous RNase P	0.957	0.993	0.608	1.4e-188
TAIR|locus:2141662	576	PRORP3 "AT4G21900" [Arabidopsi	0.841	0.866	0.437	4.8e-110
TAIR|locus:2059824	528	PRORP2 "proteinaceous RNase P	0.812	0.912	0.436	4.4e-107
TAIR|locus:2175178	156	AT5G60430 [Arabidopsis thalian	0.136	0.519	0.426	9e-15
RGD|1305089	587	RGD1305089 "similar to 1110008	0.389	0.393	0.243	1.5e-14
MGI|MGI:1913382	584	1110008L16Rik "RIKEN cDNA 1110	0.386	0.392	0.249	8.1e-14
UNIPROTKB|O15091	583	KIAA0391 "Mitochondrial ribonu	0.382	0.389	0.237	1.3e-12
TAIR|locus:2017754	718	AT1G22960 [Arabidopsis thalian	0.185	0.153	0.276	8.6e-06
TAIR|locus:2026654	257	AT1G63630 [Arabidopsis thalian	0.323	0.747	0.254	9.1e-06
TAIR|locus:1005716169	831	AT5G21222 [Arabidopsis thalian	0.239	0.170	0.277	1.3e-05

TAIR|locus:2045432 PRORP1 "proteinaceous RNase P 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1828 (648.5 bits), Expect = 1.4e-188, P = 1.4e-188
 Identities = 356/585 (60%), Positives = 434/585 (74%)

Query:     1 MLRGNFLTPSLIRTS-PFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR 59
             MLR    TPS  R   P    + K+    +H      +R    +H     K   D  +  
Sbjct:     1 MLRLTCFTPSFSRACCPLFAMMLKVPSVHLHHPRFSPFRF---YHTSLLVKGTRD--RRL 55

Query:    60 FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD 119
                + +  LCTL  +      +S+A  +  +S K+KKKA ++SPE +L+ KLDMCSK+GD
Sbjct:    56 ILVERSRHLCTLPLA---AAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGD 112

Query:   120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
             V EALRLYD+AR NG+ LSQ+HYNVLLYVCS    +E++     E+  N GL RGF+IF+
Sbjct:   113 VLEALRLYDEARRNGVQLSQYHYNVLLYVCSL---AEAAT----ESSPNPGLSRGFDIFK 165

Query:   180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
             QMI DKV PNEATFT+ ARLAVAK+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+ G
Sbjct:   166 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 225

Query:   240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
             + DKAYEVDAHM ES VVPEEPEL+ALLK+S+D K  DKVY+ L RLR LVRQVS+STF 
Sbjct:   226 DADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFD 285

Query:   300 IIEDWFDSVDAAEIGVLNWDVSKVREXXXXXXXXXXXXXXXXXXKWRVERTQIDENGVCC 359
             +IE+WF S  A + GV  WDV K+R+                  KW V+RT++DENGVC 
Sbjct:   286 MIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCK 345

Query:   360 SCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGL 419
              C E+LVCIDI+P ETE FA+SL+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+GL
Sbjct:   346 CCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGL 405

Query:   420 VNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGAL 479
             VNQ +FSF+QLN  V R +Q+SPSKR+PLVILHK RV+GGPA  PKN+ LL+ W++ GAL
Sbjct:   406 VNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGAL 465

Query:   480 YTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-D 538
             Y TPPGSNDDWYWLYA V+CK LLVTNDEMRDHLFQLLG SFFPRWKEKHQ+R+SV+R D
Sbjct:   466 YATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTRED 525

Query:   539 GLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRAR 583
             GL L MPPPYSIVIQESE+G+WHVP+   DDL+  RQWLCA R++
Sbjct:   526 GLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSK 570

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IMP;IDA

GO:0008033 "tRNA processing" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2141662 PRORP3 "AT4G21900" [Arabidopsis thaliana (taxid:3702)]

 Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
 Identities = 229/524 (43%), Positives = 312/524 (59%)

Query:    74 SKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA-RS 132
             S   T N  S  +  +  N +KKK    +PE  L   L  CSKR D+  AL LYD A  S
Sbjct:    59 SMAGTDNRRSRHDDESPKNPNKKKKGNRNPEKSLLINLHSCSKRKDLSAALALYDAAITS 118

Query:   133 NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT 192
             + I L+Q H+  LLY+CS      S +         + + RGF+IF +M++  + PNE++
Sbjct:   119 SDIRLNQQHFQSLLYLCSAFISDPSLQT--------VAIDRGFQIFDRMVSSGISPNESS 170

Query:   193 FTSVARLAVAKEDPEMAFDLVKQMKSFG--IPPKLRSYGPALFGFCKLGNTDKAYEVDAH 250
              T+VARLA AK D + AF LVK + + G    P+LR+Y PAL  FC     +K YEV+ H
Sbjct:   171 VTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRTYAPALLCFCDTLEAEKGYEVEDH 230

Query:   251 MGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA 310
             M  SG+V EE E+SALLK+S    + +KVY  L +LR  V  VSE T K IE+WF  V A
Sbjct:   231 MDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLRECVGCVSEETSKAIEEWFYGVKA 290

Query:   311 AEIGV--LNWDVSKVREXXXXXXXXXXXXXXXXXXKWRVERTQIDENGVCCSCNERLVCI 368
             +E+    +  D+  +R                   KW V++  +   G C SC+E L C+
Sbjct:   291 SEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKWIVKKGNVSSAGKCLSCDEHLACV 350

Query:   369 DIDPRETENFASSLSNLACQREVR-------SDFNKFQEWLGRHGPFDAVIDGANVGLVN 421
             D +  ETE+F +SL  LA +R+ +       +DF++FQEWL +HG ++A++DGAN+GL  
Sbjct:   351 DTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEFQEWLEKHGDYEAILDGANIGLYQ 410

Query:   422 QH----NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGG 477
             Q+     FS  QL  VV  L   S SK+ PL++LHK RV+    + P ++ L++ W +  
Sbjct:   411 QNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKKRVNA-LLENPNHRNLVEEWINNN 469

Query:   478 ALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR 537
              LY TPPGSNDDWYWLYA    K LLVTNDEMRDH+F+LL  SFF +WKE+HQ+R +  +
Sbjct:   470 VLYATPPGSNDDWYWLYAAAKLKCLLVTNDEMRDHIFELLSNSFFQKWKERHQVRFTFVK 529

Query:   538 DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
               L L MPPP+S+VIQESE GSWHVP+ + D  E+ R W+C TR
Sbjct:   530 GCLKLEMPPPFSVVIQESEKGSWHVPITSQDKEESLRSWMCITR 573

GO:0005215 "transporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IDA

GO:0001682 "tRNA 5'-leader removal" evidence=IDA

GO:0004526 "ribonuclease P activity" evidence=IDA

GO:0006397 "mRNA processing" evidence=IMP

GO:0043144 "snoRNA processing" evidence=IMP

TAIR|locus:2059824 PRORP2 "proteinaceous RNase P 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
 Identities = 222/509 (43%), Positives = 308/509 (60%)

Query:    92 NKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCS 150
             NK KK +R  +PE  L   L+ CSK  D+  AL LYD A  S+ + LSQ H+  LLY+CS
Sbjct:    20 NKKKKVSR--NPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLCS 77

Query:   151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
                   S +         L + RGFEIF +M++  + PNEA+ TSVARLA AK + + AF
Sbjct:    78 ASITDISLQY--------LAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAF 129

Query:   211 DLVKQMKSFG--IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
              +VK+  S G    P+LR+Y PAL  FC+    +K YEV+ HM  +G+  EE E+SALLK
Sbjct:   130 KVVKEFVSVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLK 189

Query:   269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGV--LNWDVSKVREX 326
             +S    + +KVY  LH+LR  V  VSE T KIIE+WF    A E+G   +  DV  +RE 
Sbjct:   190 VSAATGRENKVYRYLHKLREYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREA 249

Query:   327 XXXXXXXXXXXXXXXXXKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLA 386
                              KW V++  +   G C SC+E+L C+D +  ET+ F  SL  LA
Sbjct:   250 VLNNGGGWHGHGWVGEGKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALA 309

Query:   387 CQREVRSD-------FNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVN 435
               R+ + +       F++FQ+WL +HG ++A++DGAN+GL  Q+    +FS  QL +V+ 
Sbjct:   310 MDRKTKMNSCETNVVFSEFQDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMK 369

Query:   436 RLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYA 495
              L + S + + PL++LHK RV     + P ++ L++ W   G LY TPPGSNDDWYWLYA
Sbjct:   370 ELYRESGNNKWPLILLHKRRVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYA 428

Query:   496 TVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQES 555
                 K LLVTNDEMRDH+F+LLG++FF +WKE+HQ+R +  +  L L MP P+S+VIQES
Sbjct:   429 AAKLKCLLVTNDEMRDHIFELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQES 488

Query:   556 ENGSWHVPVITGDDLEAPRQWLCATRARV 584
             E GSWH PV   ++ E+ R W+C +R  +
Sbjct:   489 EKGSWHFPVSCENNEESSRTWMCISRQSI 517

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0001682 "tRNA 5'-leader removal" evidence=IDA

GO:0004526 "ribonuclease P activity" evidence=IDA

GO:0006397 "mRNA processing" evidence=IMP

GO:0043144 "snoRNA processing" evidence=IMP

TAIR|locus:2175178 AT5G60430 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.0e-15, P = 9.0e-15
 Identities = 38/89 (42%), Positives = 58/89 (65%)

Query:   344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVR-----SD--FN 396
             KW V++  +   G C SC+E+L C+D +  ET+ F  SL  LA +R+ +     SD  F+
Sbjct:    23 KWIVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVFS 82

Query:   397 KFQEWLGRHGPFDAVIDGANVGLVNQHNF 425
             +FQ+WL +HG ++A++DGAN+GL  Q NF
Sbjct:    83 EFQDWLEKHGDYEAIVDGANIGLYQQ-NF 110

GO:0005739 "mitochondrion" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1305089 RGD1305089 "similar to 1110008L16Rik protein" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 62/255 (24%), Positives = 113/255 (44%)

Query:   344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNK 397
             +W+ + T I ++G C SC   +  I + P E E    ++           ++    +  +
Sbjct:   334 QWKGQFTTIQKSGQCSSCGRAIESIHLSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKR 393

Query:   398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
             F+ ++    PFD VIDG NV  +         L  +V++L Q +    + L++L +  + 
Sbjct:   394 FERFVKSCPPFDIVIDGLNVAKMFPKGRESQNLLGIVSQLAQQN----LQLLVLGRKHML 449

Query:   458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKS--LLVTNDEMRDH--- 512
                +Q  K++  ++  R     +     S DD + LYAT+N  S    +T D +RDH   
Sbjct:   450 RPSSQWRKDE--MEQVRKQAHCFFADNISEDDPFLLYATLNSGSHCKFITKDLLRDHKAC 507

Query:   513 LFQLLGTSFFPRWKEKHQIRLSVS--RDGLNLLMPPPYSIVIQESENGSWHVP----VIT 566
             L        F +W++ HQ+ ++    +  L       Y  V+Q + + +WH+P    ++ 
Sbjct:   508 LPDARAQRLFFKWQQGHQLAITKGFLKSKLTFQHILSYDTVVQTTGD-TWHIPYDEDLVP 566

Query:   567 GDDLEAPRQWLCATR 581
                 E P +WLC  R
Sbjct:   567 RSSCEVPTKWLCLQR 581

GO:0005739 "mitochondrion" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

MGI|MGI:1913382 1110008L16Rik "RIKEN cDNA 1110008L16 gene" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
 Identities = 64/257 (24%), Positives = 110/257 (42%)

Query:   344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNK 397
             +W+ + T I ++G C  C   +  I + P E E     +           ++    +  +
Sbjct:   331 QWKGQFTTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKR 390

Query:   398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
             F+ ++    PFD VIDG NV  +         L  VV++L Q +    + L++L +  + 
Sbjct:   391 FESFVNSCPPFDIVIDGLNVAKMFPKGRESQNLLGVVSQLAQQN----LQLLVLGRKHML 446

Query:   458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVN----CKSLLVTNDEMRDH- 512
                +Q  K +  ++  R     +     S DD + LYAT+N    CK   +T D +RDH 
Sbjct:   447 RPSSQWRKEE--MEQVRKQAHCFFADNISEDDPFLLYATLNSGNHCK--FITKDLLRDHK 502

Query:   513 --LFQLLGTSFFPRWKEKHQIRL--SVSRDGLNLLMPPPYSIVIQESENGSWHVP----V 564
               L        F +W++ HQ+ +     +  L       Y  V+Q + + SWH+P    +
Sbjct:   503 ACLPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRTGD-SWHIPYDEDL 561

Query:   565 ITGDDLEAPRQWLCATR 581
             +     E P +WLC  R
Sbjct:   562 VQRSSCEVPTKWLCLQR 578

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O15091 KIAA0391 "Mitochondrial ribonuclease P protein 3" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 60/253 (23%), Positives = 114/253 (45%)

Query:   344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNK 397
             +W+ + T + ++G C  C + +  I + P E E     +           ++    +  +
Sbjct:   334 QWKGQFTTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPQELKR 393

Query:   398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
             F+ ++    PFD VIDG NV  +         L  VV++L +    + + L++L +  + 
Sbjct:   394 FENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----RNLRLLVLGRKHML 449

Query:   458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKS--LLVTNDEMRDHLFQ 515
                +Q  +++ + ++ +     +     S DD + LYAT++  +    +T D MRDH   
Sbjct:   450 RRSSQWSRDE-MEEVQKQASCFFADDI-SEDDPFLLYATLHSGNHCRFITRDLMRDHKAC 507

Query:   516 LLGTS---FFPRWKEKHQIRLSVSR-DGLNLLMPP--PYSIVIQESENGSWHVP----VI 565
             L        F +W++ HQ+ + V+R  G  L       Y  V+Q + + SWH+P    ++
Sbjct:   508 LPDAKTQRLFFKWQQGHQLAI-VNRFPGSKLTFQRILSYDTVVQTTGD-SWHIPYDEDLV 565

Query:   566 TGDDLEAPRQWLC 578
                  E P +WLC
Sbjct:   566 ERCSCEVPTKWLC 578

GO:0008033 "tRNA processing" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TAIR|locus:2017754 AT1G22960 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
 Identities = 31/112 (27%), Positives = 56/112 (50%)

Query:   172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP-EMAFDLVKQMKSFGIPPKLRSYGP 230
             K    ++ +M+  ++ P+  T+  V     AK    E AF    +MK  G+ P + ++  
Sbjct:   567 KMARNLYDEMLRKRLYPSVITYF-VLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNA 625

Query:   231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
              L+G CK GN D+AY     M E G+ P +   + L+  + D +K ++V ++
Sbjct:   626 LLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKL 677

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2026654 AT1G63630 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 55/216 (25%), Positives = 95/216 (43%)

Query:   111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
             +D   K G+   A  L+ +    GI       NVL Y C      +S  +  R +D++  
Sbjct:    17 VDRLCKDGNHINAQNLFTEMHEKGI-----FPNVLTYNCMI----DSFCHSGRWSDAD-- 65

Query:   171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
                  ++ + MI  +++P+  TF+++    V +     A ++ K+M  + I P   +Y  
Sbjct:    66 -----QLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNS 120

Query:   231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI---LHRLR 287
              + GFCK    D A  +   M   G  P+    S L+     AK+VD   EI   +HR  
Sbjct:   121 MIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRG 180

Query:   288 TLVRQVSESTFKIIEDWFD--SVDAAEIGVLNWDVS 321
              +   V+ +T  +I  +     +DAA+  +LN  +S
Sbjct:   181 IVANTVTYTT--LIHGFCQVGDLDAAQ-DLLNEMIS 213

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716169 AT5G21222 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 40/144 (27%), Positives = 70/144 (48%)

Query:   167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
             S++G +KR  EI+  M+   +DP+   F+ +A+      +PE A  ++ QM+ FG+ P +
Sbjct:   612 SSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNV 671

Query:   226 RSYGPALFGFCKLGNTDKAYEVDAHM-GESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
               Y   + G+C  G   KA +V   M G  G+ P       L+    +AK+  K  E+L 
Sbjct:   672 VIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLK 731

Query:   285 RLRTLVRQVSESTFKIIEDWFDSV 308
              +       +  T ++I D + S+
Sbjct:   732 DMEGKNVVPTRKTMQLIADGWKSI 755

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q66GI4	PRRP1_ARATH	No assigned EC number	0.6320	0.9578	0.9930	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_IV0816 hypothetical protein (516 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	593
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.001
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.001
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 57.6 bits (139), Expect = 2e-08
 Identities = 39/188 (20%), Positives = 72/188 (38%), Gaps = 16/188 (8%)

Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
           C+  G V  A  +Y       I  +   Y + +  CS K        GD           
Sbjct: 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK--------GD--------WDF 632

Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
              I+  M    V P+E  F+++  +A    D + AF++++  +  GI     SY   + 
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692

Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
                 N  KA E+   +    + P    ++AL+    +  ++ K  E+L  ++ L    
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752

Query: 294 SESTFKII 301
           +  T+ I+
Sbjct: 753 NTITYSIL 760

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 22/141 (15%)

Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
           CS   +  +AL LY+D +S  +  +    N L+   +  C       G++       L +
Sbjct: 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALI---TALC------EGNQ-------LPK 737

Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
             E+  +M    + PN  T++ +   +  K+D ++  DL+ Q K  GI P L      + 
Sbjct: 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCR-CIT 796

Query: 234 GFCKLGNTDKAYEVDAHMGES 254
           G C      + +E    +GE 
Sbjct: 797 GLCL-----RRFEKACALGEP 812

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.5 bits (91), Expect = 3e-04
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
           +D   K+G V EAL+L+++ +  GI  + + Y++L+    CK
Sbjct: 10  IDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL-CK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 57/222 (25%)

Query: 108 RHKLDM-----------CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE 156
           R  LDM           C K+  V EA R     R+   TLS   +N+L+ VC     S+
Sbjct: 399 RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNP--TLS--TFNMLMSVC---ASSQ 451

Query: 157 SSENGDR----------ENDSNL-------GLKRG-----FEIFQQMITDKVDPNEATFT 194
             +   R          + D  L         K G     FE+F +M+   V+ N  TF 
Sbjct: 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511

Query: 195 SV----ARLA-VAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC-KLGNTDKAYEVD 248
           ++    AR   VAK     AF     M+S  + P  R    AL   C + G  D+A++V 
Sbjct: 512 ALIDGCARAGQVAK-----AFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVL 565

Query: 249 AHMGESG--VVPEEPELSALLKLSVDAKKVDK---VYEILHR 285
           A M      + P+   + AL+K   +A +VD+   VY+++H 
Sbjct: 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 41.8 bits (98), Expect = 0.001
 Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 16/174 (9%)

Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
           CS++GD   AL +YDD +  G+   +  ++ L+ V        +   GD        L +
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDV--------AGHAGD--------LDK 667

Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
            FEI Q      +     +++S+       ++ + A +L + +KS  + P + +    + 
Sbjct: 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALIT 727

Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
             C+     KA EV + M   G+ P     S LL  S      D   ++L + +
Sbjct: 728 ALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF-GFCK 237
           P+  T+ ++      K   E A  L  +MK  GI P + +Y   L  G CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYS-ILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
           L +Y   L    K G+ D A  V   M  SG+ P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
             T+ ++        DP++A  ++++MK+ G+ P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	593
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PF11977	155	RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domai	99.83
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.55
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.49
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.43
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.43
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.31
PF13041	50	PPR_2: PPR repeat family	99.29
PF13041	50	PPR_2: PPR repeat family	99.27
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.2
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.11
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.06
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.01
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.85
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.84
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.8
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.76
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.73
PF12854	34	PPR_1: PPR repeat	98.66
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.65
PF12854	34	PPR_1: PPR repeat	98.64
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.64
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.62
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.62
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.58
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.54
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.51
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.47
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.44
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.43
PRK12370	553	invasion protein regulator; Provisional	98.42
PRK14574	822	hmsH outer membrane protein; Provisional	98.4
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.38
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.36
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.35
PRK12370	553	invasion protein regulator; Provisional	98.31
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.31
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.3
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.27
PRK14574	822	hmsH outer membrane protein; Provisional	98.27
PRK11189	296	lipoprotein NlpI; Provisional	98.17
KOG1129	478	consensus TPR repeat-containing protein [General f	98.17
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.11
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.06
KOG1126	638	consensus DNA-binding cell division cycle control	98.05
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.0
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.0
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.0
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.99
KOG1126	638	consensus DNA-binding cell division cycle control	97.98
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.98
PRK11189	296	lipoprotein NlpI; Provisional	97.88
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.84
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.82
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.81
KOG1129	478	consensus TPR repeat-containing protein [General f	97.8
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.8
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	97.79
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.76
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.76
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.74
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.73
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.64
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.61
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.61
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.57
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.51
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.51
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.51
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.5
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.48
KOG2003	840	consensus TPR repeat-containing protein [General f	97.39
PRK15359	144	type III secretion system chaperone protein SscB;	97.38
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.38
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.37
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.34
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.34
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.29
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.24
PRK15359	144	type III secretion system chaperone protein SscB;	97.21
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.2
KOG2003	840	consensus TPR repeat-containing protein [General f	97.2
KOG1125	579	consensus TPR repeat-containing protein [General f	97.16
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.13
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.12
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.09
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.09
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.04
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.04
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.04
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.03
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	97.01
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.0
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.0
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.98
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.98
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.96
KOG2076	895	consensus RNA polymerase III transcription factor	96.94
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.93
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.91
KOG2076	895	consensus RNA polymerase III transcription factor	96.9
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	96.83
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.8
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.67
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.65
PLN02789	320	farnesyltranstransferase	96.5
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.49
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.47
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.46
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.33
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.33
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.26
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.23
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.21
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.19
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	96.19
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.19
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.15
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.13
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.06
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.04
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.0
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.97
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.93
PRK04841	903	transcriptional regulator MalT; Provisional	95.92
PRK14720	906	transcript cleavage factor/unknown domain fusion p	95.92
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	95.85
PLN02789	320	farnesyltranstransferase	95.84
KOG3060	289	consensus Uncharacterized conserved protein [Funct	95.77
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	95.74
KOG1128	777	consensus Uncharacterized conserved protein, conta	95.7
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.69
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.66
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.5
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	95.44
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.4
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.38
KOG0553	304	consensus TPR repeat-containing protein [General f	95.37
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.36
KOG3616	1636	consensus Selective LIM binding factor [Transcript	95.31
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.28
KOG3941	406	consensus Intermediate in Toll signal transduction	95.27
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.26
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.23
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.23
KOG1125	579	consensus TPR repeat-containing protein [General f	95.21
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	95.17
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.11
KOG3616	1636	consensus Selective LIM binding factor [Transcript	95.07
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	94.99
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.98
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	94.94
PF12688	120	TPR_5: Tetratrico peptide repeat	94.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	94.93
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	94.75
KOG2376	652	consensus Signal recognition particle, subunit Srp	94.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.59
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.47
KOG3941	406	consensus Intermediate in Toll signal transduction	94.46
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	94.45
KOG3060	289	consensus Uncharacterized conserved protein [Funct	94.42
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.42
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.3
KOG2047	835	consensus mRNA splicing factor [RNA processing and	94.16
PF12688	120	TPR_5: Tetratrico peptide repeat	94.04
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	93.95
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.84
KOG2796	366	consensus Uncharacterized conserved protein [Funct	93.8
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	93.75
PRK04841	903	transcriptional regulator MalT; Provisional	93.62
KOG3785	557	consensus Uncharacterized conserved protein [Funct	93.51
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	93.36
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	93.34
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.3
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.24
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	93.17
KOG2047	835	consensus mRNA splicing factor [RNA processing and	93.08
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	92.9
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.81
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	92.71
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	92.67
PRK10803	263	tol-pal system protein YbgF; Provisional	92.61
KOG0553	304	consensus TPR repeat-containing protein [General f	92.29
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.13
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	92.12
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	92.09
PF13371	73	TPR_9: Tetratricopeptide repeat	92.07
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	91.88
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	91.52
PF13371	73	TPR_9: Tetratricopeptide repeat	91.19
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	91.14
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	90.64
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	90.52
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	90.43
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	90.37
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	90.31
PRK10803	263	tol-pal system protein YbgF; Provisional	89.9
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	89.6
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	89.53
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.41
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	89.35
KOG3777	443	consensus Uncharacterized conserved protein [Funct	89.31
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	89.2
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	88.94
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	88.88
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.85
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	88.49
PF13929	292	mRNA_stabil: mRNA stabilisation	88.03
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	87.89
PRK11906	458	transcriptional regulator; Provisional	87.44
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	86.96
COG3629	280	DnrI DNA-binding transcriptional activator of the	86.82
COG3898	531	Uncharacterized membrane-bound protein [Function u	84.9
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	84.7
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	84.46
PF13762	145	MNE1: Mitochondrial splicing apparatus component	84.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	84.19
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	84.16
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	84.0
PF13929	292	mRNA_stabil: mRNA stabilisation	83.95
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	83.35
COG4700	251	Uncharacterized protein conserved in bacteria cont	83.29
COG3629	280	DnrI DNA-binding transcriptional activator of the	83.04
PRK15331	165	chaperone protein SicA; Provisional	82.9
smart00299	140	CLH Clathrin heavy chain repeat homology.	82.73
KOG4555	175	consensus TPR repeat-containing protein [Function	82.49
KOG2297	412	consensus Predicted translation factor, contains W	82.37
KOG2796	366	consensus Uncharacterized conserved protein [Funct	81.23
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	81.16
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	81.08
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	80.66
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	80.4

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.5e-45  Score=413.90  Aligned_cols=356  Identities=16%  Similarity=0.169  Sum_probs=326.3

Q ss_pred             ccCCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCC
Q 007684           29 MHQSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRES  102 (593)
Q Consensus        29 ~~~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  102 (593)
                      |..||..+|+.+|.+|+..     +..++..|.+.|+.||..+ +.||.+|++.|++++|..+|.+|.      +.+..+
T Consensus       432 M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~------~~Gv~P  505 (1060)
T PLN03218        432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV------NAGVEA  505 (1060)
T ss_pred             cCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH------HcCCCC
Confidence            4559999999999999955     7899999999999999999 999999999999999999997665      456677


Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      +..+|+.+|.+|++.|++++|.++|++|.+.|+.||..|||+||.+|.+.                |++++|.++|++|.
T Consensus       506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~----------------G~~deA~~lf~eM~  569 (1060)
T PLN03218        506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS----------------GAVDRAFDVLAEMK  569 (1060)
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH
Confidence            88889999999999999999999999999999999999999999999997                59999999999998


Q ss_pred             h--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 007684          183 T--DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE  260 (593)
Q Consensus       183 ~--~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  260 (593)
                      .  .|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus       570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~  649 (1060)
T PLN03218        570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE  649 (1060)
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence            6  68999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccc
Q 007684          261 PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWL  340 (593)
Q Consensus       261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~  340 (593)
                      .+|++||.+|++.|+.++|.+++++|.+.|+.|+..+|+.|+.+|++.+..+.+      ..+.+.|.+.|..++-.+  
T Consensus       650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA------~~lf~eM~~~g~~Pdvvt--  721 (1060)
T PLN03218        650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA------LELYEDIKSIKLRPTVST--  721 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH------HHHHHHHHHcCCCCCHHH--
Confidence            999999999999999999999999999999999999999999999988765543      456667777776555443  


Q ss_pred             cCCceEEEEecccCCCCcCcccccccccCC-----CHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeecc
Q 007684          341 GSGKWRVERTQIDENGVCCSCNERLVCIDI-----DPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGA  415 (593)
Q Consensus       341 ~~~~~~v~~~~i~~~g~c~~~~~al~~~~l-----~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~  415 (593)
                             .+++|+.+.+++..++|++.++.     -.|+..+|..+|.+|++.|++++|.++|++|++.|..||.++.+.
T Consensus       722 -------yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns  794 (1060)
T PLN03218        722 -------MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC  794 (1060)
T ss_pred             -------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence                   36889999999999999999882     237789999999999999999999999999999999999998888


Q ss_pred             ceeccc
Q 007684          416 NVGLVN  421 (593)
Q Consensus       416 nv~~~~  421 (593)
                      .++++.
T Consensus       795 LIglc~  800 (1060)
T PLN03218        795 ITGLCL  800 (1060)
T ss_pred             HHHHHH
Confidence            887654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.1e-43  Score=400.92  Aligned_cols=386  Identities=12%  Similarity=0.109  Sum_probs=330.2

Q ss_pred             CchhHHHhhhccccccCCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCccc
Q 007684           15 SPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTG   88 (593)
Q Consensus        15 ~~~~~~~~~~~~~~~~~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~   88 (593)
                      ..+|..|.+.   -...|+..+++.++.++...     +..++..|..    |+..+ +.+|.+|++.|++++|..++..
T Consensus       390 l~Lfd~M~~~---gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~  462 (1060)
T PLN03218        390 IDLLEDMEKR---GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRL  462 (1060)
T ss_pred             HHHHHHHHhC---CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            3444444442   22345666677777777643     5566666654    88888 9999999999999999999966


Q ss_pred             ccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCccccc
Q 007684           89 TMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN  168 (593)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~  168 (593)
                      +.      +.+..++..+|+.||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.                
T Consensus       463 M~------~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~----------------  520 (1060)
T PLN03218        463 VQ------EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA----------------  520 (1060)
T ss_pred             HH------HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC----------------
Confidence            55      46677778889999999999999999999999999999999999999999999987                


Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCcccHHHHHHHHHhcCChhHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS--FGIPPKLRSYGPALFGFCKLGNTDKAYE  246 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~ty~~li~~~~~~g~~~~A~~  246 (593)
                      |++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|..  .|+.||..+|+.+|.+|++.|++++|++
T Consensus       521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e  600 (1060)
T PLN03218        521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE  600 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            69999999999999999999999999999999999999999999999976  6899999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHh
Q 007684          247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREG  326 (593)
Q Consensus       247 l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~  326 (593)
                      +|++|.+.|+.|+..+|++||.+|++.|++++|.++|++|.+.|+.|+..||+.++.+|++.+..+.      +..+.+.
T Consensus       601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee------A~~l~~e  674 (1060)
T PLN03218        601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK------AFEILQD  674 (1060)
T ss_pred             HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH------HHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988776553      3566777


Q ss_pred             hhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCC-----HHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 007684          327 IVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDID-----PRETENFASSLSNLACQREVRSDFNKFQEW  401 (593)
Q Consensus       327 ~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~-----~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~  401 (593)
                      |.+.|..+...         +.+++|+.+.+|+..++|++.|+..     .|+..+|+.+|.+|++.|++++|+++|++|
T Consensus       675 M~k~G~~pd~~---------tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM  745 (1060)
T PLN03218        675 ARKQGIKLGTV---------SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM  745 (1060)
T ss_pred             HHHcCCCCCHH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            77777655533         4578999999999999999999822     478999999999999999999999999999


Q ss_pred             HHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhhCCCCCceE
Q 007684          402 LGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPL  448 (593)
Q Consensus       402 l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~~~~~~~~l  448 (593)
                      .+.|..||.++....+..+.+.+    .++.+.+.+.+|...+-.|-
T Consensus       746 ~~~Gi~Pd~~Ty~sLL~a~~k~G----~le~A~~l~~~M~k~Gi~pd  788 (1060)
T PLN03218        746 KRLGLCPNTITYSILLVASERKD----DADVGLDLLSQAKEDGIKPN  788 (1060)
T ss_pred             HHcCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHcCCCCC
Confidence            99999999999888887776653    35555555555544454443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.2e-42  Score=397.68  Aligned_cols=378  Identities=12%  Similarity=0.097  Sum_probs=259.3

Q ss_pred             CCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH
Q 007684           31 QSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE  104 (593)
Q Consensus        31 ~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  104 (593)
                      .||.+||+++|.+++..     ...++..|.+.|+.|+..+ +.||.+|++.|++++|..+|+.+.          .++.
T Consensus       184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----------~~d~  253 (857)
T PLN03077        184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----------RRDC  253 (857)
T ss_pred             CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----------CCCc
Confidence            45555665555555422     3455556666666677777 888889999999999999997665          3455


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCC-------------------CCCCcc
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSE-------------------NGDREN  165 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~-------------------~~~~~~  165 (593)
                      .+||++|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|...+..+.++                   .++++|
T Consensus       254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y  333 (857)
T PLN03077        254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY  333 (857)
T ss_pred             chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence            6799999999999999999999999999999999999999999999876433222                   122445


Q ss_pred             cccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 007684          166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY  245 (593)
Q Consensus       166 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~  245 (593)
                      +++|++++|.++|++|.    .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.
T Consensus       334 ~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~  409 (857)
T PLN03077        334 LSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV  409 (857)
T ss_pred             HhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHH
Confidence            55555666666665554    35555566666666666666666666666655555566666666666666666666666


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------------cCCCCH
Q 007684          246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL------------------------------VRQVSE  295 (593)
Q Consensus       246 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~------------------------------~~~~~~  295 (593)
                      ++++.|.+.|+.|+..+|++||++|++.|++++|.++|++|.+.                              +..|+.
T Consensus       410 ~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~  489 (857)
T PLN03077        410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS  489 (857)
T ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCH
Confidence            66666665566666666666666666666666666655555331                              122333


Q ss_pred             HHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHH
Q 007684          296 STFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRET  375 (593)
Q Consensus       296 ~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~  375 (593)
                      .||..++.+|++.+..+.+      ..+...+.+.|...         +-.+.+++|++|.+|+..++|.+.|+..+++.
T Consensus       490 ~t~~~lL~a~~~~g~l~~~------~~i~~~~~~~g~~~---------~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~  554 (857)
T PLN03077        490 VTLIAALSACARIGALMCG------KEIHAHVLRTGIGF---------DGFLPNALLDLYVRCGRMNYAWNQFNSHEKDV  554 (857)
T ss_pred             hHHHHHHHHHhhhchHHHh------HHHHHHHHHhCCCc---------cceechHHHHHHHHcCCHHHHHHHHHhcCCCh
Confidence            3333333333332222211      12333333344332         23467899999999999999999999668999


Q ss_pred             HHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhhC
Q 007684          376 ENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMS  441 (593)
Q Consensus       376 ~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~~  441 (593)
                      .+|+.+|.+|++.|+.++|+++|++|.+.|..||.++....+..+...+    .++++.+.|.+|.
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g----~v~ea~~~f~~M~  616 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG----MVTQGLEYFHSME  616 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC----hHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888887776653    4677777777665

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.8e-41  Score=381.34  Aligned_cols=396  Identities=12%  Similarity=0.040  Sum_probs=325.6

Q ss_pred             ccccCchhHHHhhhccccccCCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCC
Q 007684           11 LIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSA   84 (593)
Q Consensus        11 ~~r~~~~~~~~~~~~~~~~~~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~   84 (593)
                      +..|..+|..+...   -...||..+|+++|.++.+.     +..++..|.+.|+.|+..+ +.||.+|++.|++++|..
T Consensus       103 ~~~Al~~f~~m~~~---~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~  179 (697)
T PLN03081        103 HREALELFEILEAG---CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR  179 (697)
T ss_pred             HHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHH
Confidence            34445566666542   12348999999999999865     6788899999999999999 999999999999999999


Q ss_pred             CcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCC-------
Q 007684           85 PNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES-------  157 (593)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~-------  157 (593)
                      +|+++.          .++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|...+..+.       
T Consensus       180 lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~  249 (697)
T PLN03081        180 LFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC  249 (697)
T ss_pred             HHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence            997776          246667999999999999999999999999999988888888777766665433221       


Q ss_pred             ----------------------------C---------------CCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHH
Q 007684          158 ----------------------------S---------------ENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFT  194 (593)
Q Consensus       158 ----------------------------~---------------~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~  194 (593)
                                                  +               ..++.+|+++|+.++|+++|++|.+.|+.||..||+
T Consensus       250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~  329 (697)
T PLN03081        250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS  329 (697)
T ss_pred             HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence                                        1               123466788899999999999999999999999999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684          195 SVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK  274 (593)
Q Consensus       195 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g  274 (593)
                      ++|.+|++.|++++|.+++++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+    ||..+||+||.+|++.|
T Consensus       330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G  405 (697)
T PLN03081        330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHG  405 (697)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999964    79999999999999999


Q ss_pred             CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhc-CCCcccccccccCCceEEEEeccc
Q 007684          275 KVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVR-GGGGWHGQGWLGSGKWRVERTQID  353 (593)
Q Consensus       275 ~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~g~~~~g~~~~~~~~~~v~~~~i~  353 (593)
                      +.++|.++|++|.+.|+.|+..||..++.+|+..+..+.+.      .+.+.|.+ .|..+.         .....++|+
T Consensus       406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~------~~f~~m~~~~g~~p~---------~~~y~~li~  470 (697)
T PLN03081        406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW------EIFQSMSENHRIKPR---------AMHYACMIE  470 (697)
T ss_pred             CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH------HHHHHHHHhcCCCCC---------ccchHhHHH
Confidence            99999999999999999999999999999999888776554      45555543 344333         234578999


Q ss_pred             CCCCcCcccccccccCCC--HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHH
Q 007684          354 ENGVCCSCNERLVCIDID--PRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLN  431 (593)
Q Consensus       354 ~~g~c~~~~~al~~~~l~--~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~  431 (593)
                      .+++++..++|.+.++-.  .|+..+|..++.+|+..|+++.+...++++++.. |.++....+.+..|...|    +++
T Consensus       471 ~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G----~~~  545 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSG----RQA  545 (697)
T ss_pred             HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCC----CHH
Confidence            999999999999999833  3678899999999999999999999999987543 334444455555555554    345


Q ss_pred             HHHHHHHhhCCC
Q 007684          432 TVVNRLRQMSPS  443 (593)
Q Consensus       432 ~vv~~l~~~~~~  443 (593)
                      ++.+.+++|...
T Consensus       546 ~A~~v~~~m~~~  557 (697)
T PLN03081        546 EAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHc
Confidence            555555444433

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5.9e-40  Score=377.55  Aligned_cols=351  Identities=15%  Similarity=0.096  Sum_probs=313.7

Q ss_pred             ccccCCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcC
Q 007684           27 PLMHQSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARR  100 (593)
Q Consensus        27 ~~~~~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  100 (593)
                      ..|..||+++||++|.+|++.     +..++.+|...|+.||..| +.+|.+|++.+.+..+.+++..+.      +.+.
T Consensus       145 ~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~------~~g~  218 (857)
T PLN03077        145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV------RFGF  218 (857)
T ss_pred             hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH------HcCC
Confidence            456689999999999999855     7888999999999999999 999999999999999888886655      4677


Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684          101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ  180 (593)
Q Consensus       101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~  180 (593)
                      .++..+||+||.+|++.|++++|.++|++|.    .||.++||+||.+|.+.                |+.++|+++|++
T Consensus       219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~----------------g~~~eAl~lf~~  278 (857)
T PLN03077        219 ELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFEN----------------GECLEGLELFFT  278 (857)
T ss_pred             CcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhC----------------CCHHHHHHHHHH
Confidence            7777889999999999999999999999997    46889999999999987                699999999999


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 007684          181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE  260 (593)
Q Consensus       181 M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  260 (593)
                      |.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||.+|.+|++.|++++|.++|++|.    .||.
T Consensus       279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~  354 (857)
T PLN03077        279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA  354 (857)
T ss_pred             HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence            999999999999999999999999999999999999999999999999999999999999999999999996    4889


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccc
Q 007684          261 PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWL  340 (593)
Q Consensus       261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~  340 (593)
                      .+|++||.+|++.|+.++|.++|++|.+.++.|+..||..++.+|++.+..+.+      ..+.+.+.+.|....     
T Consensus       355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a------~~l~~~~~~~g~~~~-----  423 (857)
T PLN03077        355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG------VKLHELAERKGLISY-----  423 (857)
T ss_pred             eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH------HHHHHHHHHhCCCcc-----
Confidence            999999999999999999999999999999999999999999999888766644      456666777765433     


Q ss_pred             cCCceEEEEecccCCCCcCcccccccccC-CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceec
Q 007684          341 GSGKWRVERTQIDENGVCCSCNERLVCID-IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGL  419 (593)
Q Consensus       341 ~~~~~~v~~~~i~~~g~c~~~~~al~~~~-l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~  419 (593)
                          ..+.+++|++|++|+..++|.+.|+ +.+++..+|+.+|.+|+..|+.++|+++|++|+. +.+||.+.....+..
T Consensus       424 ----~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a  498 (857)
T PLN03077        424 ----VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA  498 (857)
T ss_pred             ----hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence                3356789999999999999999999 6667889999999999999999999999999986 578888877777665


Q ss_pred             ccCC
Q 007684          420 VNQH  423 (593)
Q Consensus       420 ~~~~  423 (593)
                      +...
T Consensus       499 ~~~~  502 (857)
T PLN03077        499 CARI  502 (857)
T ss_pred             Hhhh
Confidence            5443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2e-39  Score=364.83  Aligned_cols=361  Identities=13%  Similarity=0.081  Sum_probs=323.5

Q ss_pred             CCcccHHHHHHHHHHh-----CCChhhHHhhcC-Cccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH
Q 007684           32 SNCHTYRSLLCWHMHS-----FTKPITDIKQNR-FSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE  104 (593)
Q Consensus        32 pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g-~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~  104 (593)
                      ++..+|+++|.++...     +..++..|...+ +.|+..+ +.++.+|++.++++.+..++..+.      +.+..++.
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~------~~g~~~~~  158 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE------SSGFEPDQ  158 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HhCCCcch
Confidence            3556899999999854     778899998765 7899999 999999999999999998885554      46777788


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      .+||.+|.+|++.|++++|.++|++|.+    ||..+||+||.+|.+.                |++++|+++|++|.+.
T Consensus       159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~----------------g~~~~A~~lf~~M~~~  218 (697)
T PLN03081        159 YMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDA----------------GNYREAFALFREMWED  218 (697)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHC----------------cCHHHHHHHHHHHHHh
Confidence            8899999999999999999999999974    7999999999999997                6999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS  264 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  264 (593)
                      |+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+||.||.+|++.|++++|.++|++|..    +|..+||
T Consensus       219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n  294 (697)
T PLN03081        219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWN  294 (697)
T ss_pred             CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999964    6899999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCc
Q 007684          265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGK  344 (593)
Q Consensus       265 ~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~  344 (593)
                      +||.+|++.|+.++|.++|++|.+.|+.|+..||..++.+|++.+..+.+      ..+.+.|.+.|...+         
T Consensus       295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a------~~i~~~m~~~g~~~d---------  359 (697)
T PLN03081        295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA------KQAHAGLIRTGFPLD---------  359 (697)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH------HHHHHHHHHhCCCCC---------
Confidence            99999999999999999999999999999999999999999888765533      466777777775443         


Q ss_pred             eEEEEecccCCCCcCcccccccccC-CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCC
Q 007684          345 WRVERTQIDENGVCCSCNERLVCID-IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH  423 (593)
Q Consensus       345 ~~v~~~~i~~~g~c~~~~~al~~~~-l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~  423 (593)
                      ..+.+++|++|++|+..++|.+.|+ +..++..+|+.+|.+|++.|+.++|+++|++|.+.|..||.++....+..+...
T Consensus       360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~  439 (697)
T PLN03081        360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS  439 (697)
T ss_pred             eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence            4577899999999999999999999 556889999999999999999999999999999999999999988888777665


Q ss_pred             CCChhhHHHHHHHHHhhC
Q 007684          424 NFSFYQLNTVVNRLRQMS  441 (593)
Q Consensus       424 ~~~~~~l~~vv~~l~~~~  441 (593)
                      +    .++++.+.|..|.
T Consensus       440 g----~~~~a~~~f~~m~  453 (697)
T PLN03081        440 G----LSEQGWEIFQSMS  453 (697)
T ss_pred             C----cHHHHHHHHHHHH
Confidence            3    4677777777664

>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []

Probab=99.83  E-value=3.2e-21  Score=173.29  Aligned_cols=131  Identities=28%  Similarity=0.434  Sum_probs=97.6

Q ss_pred             CeeeeccceecccCC--CCChhhHHHHHHHHHhhCCCCCceEEEecCCCcCCCCCCCcchHHHHHHHHhCCcEEeCCCCC
Q 007684          409 DAVIDGANVGLVNQH--NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGS  486 (593)
Q Consensus       409 d~vidg~nv~~~~~~--~~~~~~l~~vv~~l~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  486 (593)
                      -+||||+|||+...+  .|++.+|..++++|++   .|..+++++...+........+.+++.+++|.+.+.+++||.++
T Consensus         4 ~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~   80 (155)
T PF11977_consen    4 PVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGS   80 (155)
T ss_dssp             -EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEE
T ss_pred             EEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCC
Confidence            379999999874333  5888999999999998   46778888776664333445777889999999999999999999


Q ss_pred             C--------ChHHHHHHHHhCCcEEEecchhhccccccccccchhhhhcccEeEEEeecCceeeeCC
Q 007684          487 N--------DDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMP  545 (593)
Q Consensus       487 ~--------DD~~~lyaa~~~~~~~vs~D~~rdh~~~~~~~~~f~~w~~~hq~~~~~~~~~~~~~~p  545 (593)
                      +        ||||||++|...+++|||||+||||.+   ....|.+|.++|+++|+|..+.+.+...
T Consensus        81 ~~g~~~~~ydD~~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i~~tf~~~~~~~~~d  144 (155)
T PF11977_consen   81 NYGSRSRNYDDRYILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLIRFTFVGDEFMPPPD  144 (155)
T ss_dssp             ETTEEEEB-HHHHHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE--EEETTEEE--SS
T ss_pred             CCCCcccccchHHHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeeeeEEEECCEEEcCCC
Confidence            8        999999999999999999999999999   6678999999999999998776655444

It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.55  E-value=9.6e-13  Score=138.37  Aligned_cols=229  Identities=13%  Similarity=0.057  Sum_probs=132.0

Q ss_pred             CCChhhHHhhcCCccccc-h-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC---HHHHHHHHHHHHcCCCHHH
Q 007684           48 FTKPITDIKQNRFSADLT-T-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP---EGVLRHKLDMCSKRGDVFE  122 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~  122 (593)
                      +...+..+.+..  |+.. + ..+...|...|++++|...++.++.      .....+   ...+..+...|.+.|++++
T Consensus        54 A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~~~~~~~~~~~~~~La~~~~~~g~~~~  125 (389)
T PRK11788         54 AIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLS------RPDLTREQRLLALQELGQDYLKAGLLDR  125 (389)
T ss_pred             HHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence            444444554432  3322 2 5566666777777777766654441      111111   1236666667777777777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 007684          123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE----ATFTSVAR  198 (593)
Q Consensus       123 A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~----~ty~~li~  198 (593)
                      |+.+|+++.+.. ..+..+++.+..++...                |++++|.+.++.+.+.+..++.    ..+..+..
T Consensus       126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~----------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~  188 (389)
T PRK11788        126 AEELFLQLVDEG-DFAEGALQQLLEIYQQE----------------KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHcCC-cchHHHHHHHHHHHHHh----------------chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            777777766542 23455666666666654                4777777777777655422221    23445566


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007684          199 LAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD  277 (593)
Q Consensus       199 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~  277 (593)
                      .+.+.|++++|.++++++.+..  |+ ...+..+...|.+.|+.++|.++++++.+.+-.....+++.+..+|.+.|+.+
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~  266 (389)
T PRK11788        189 QALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA  266 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence            6667777777777777776532  33 34556666777777777777777777665432222344666677777777777


Q ss_pred             HHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684          278 KVYEILHRLRTLVRQVSESTFKIIEDWF  305 (593)
Q Consensus       278 ~a~~~l~~m~~~~~~~~~~t~~~l~~~~  305 (593)
                      +|...++++.+.  .|+...+..+...+
T Consensus       267 ~A~~~l~~~~~~--~p~~~~~~~la~~~  292 (389)
T PRK11788        267 EGLEFLRRALEE--YPGADLLLALAQLL  292 (389)
T ss_pred             HHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence            777777776653  34444444444444

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.49  E-value=9e-12  Score=130.98  Aligned_cols=264  Identities=14%  Similarity=0.084  Sum_probs=192.9

Q ss_pred             HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 007684           70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS---QHHYNVLL  146 (593)
Q Consensus        70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~ll  146 (593)
                      ...+...|++++|...|.+++       ...+.....+..+...+...|++++|..+++.+.+.+..++   ...+..+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La  114 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEML-------KVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG  114 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHH-------hcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            345678899999999997776       33334455688999999999999999999999987643222   24556666


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-  225 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-  225 (593)
                      ..|...                |++++|.++|+++.+.. +.+..+++.++..+.+.|++++|.++++.+.+.+-.+.. 
T Consensus       115 ~~~~~~----------------g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  177 (389)
T PRK11788        115 QDYLKA----------------GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV  177 (389)
T ss_pred             HHHHHC----------------CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH
Confidence            677665                69999999999998764 567889999999999999999999999999875432221 


Q ss_pred             ---ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 007684          226 ---RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIE  302 (593)
Q Consensus       226 ---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~  302 (593)
                         ..|..+...+.+.|+.++|...|+++.+.. +.+...+..+...+.+.|+.++|.++++++.+........++..+.
T Consensus       178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~  256 (389)
T PRK11788        178 EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM  256 (389)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH
Confidence               245667788899999999999999998643 2235567888899999999999999999998743222234566666


Q ss_pred             HHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHH
Q 007684          303 DWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL  382 (593)
Q Consensus       303 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i  382 (593)
                      ..|...+..+.+.      ...+.+.+                                        ..| +...+..++
T Consensus       257 ~~~~~~g~~~~A~------~~l~~~~~----------------------------------------~~p-~~~~~~~la  289 (389)
T PRK11788        257 ECYQALGDEAEGL------EFLRRALE----------------------------------------EYP-GADLLLALA  289 (389)
T ss_pred             HHHHHcCCHHHHH------HHHHHHHH----------------------------------------hCC-CchHHHHHH
Confidence            6665444322211      11111111                                        112 223446677


Q ss_pred             HHHhhhhhhHHhHHHHHHHHHhc
Q 007684          383 SNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       383 ~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                      ..+...|+.++|...|+++++..
T Consensus       290 ~~~~~~g~~~~A~~~l~~~l~~~  312 (389)
T PRK11788        290 QLLEEQEGPEAAQALLREQLRRH  312 (389)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC
Confidence            78888999999999999988864

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.43  E-value=9.6e-12  Score=144.50  Aligned_cols=210  Identities=10%  Similarity=0.010  Sum_probs=97.2

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...+.+.|+.++|...+.+..       ...+.....+..+...|.+.|++++|..+++.+.+.. +.+..+|..+.
T Consensus       537 ~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  608 (899)
T TIGR02917       537 LALAGLYLRTGNEEEAVAWLEKAA-------ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLG  608 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-------HhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence            555555666666666666554433       1122233334555555555555555555555555432 22344455554


Q ss_pred             HHHHccCCCCCCCCC------------------CCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 007684          147 YVCSCKCGSESSENG------------------DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM  208 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~------------------~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~  208 (593)
                      .+|...+..+.+...                  ...+...|++++|.++|+++.+.. +.+..++..++..+...|++++
T Consensus       609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  687 (899)
T TIGR02917       609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTES  687 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            444443200000000                  000001135555555555554433 3334455555555555555555


Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       209 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      |.++++.+.+... ++...+..+...+.+.|++++|.+.|+.+...+  |+..++..+..++.+.|+.++|.+.++++.+
T Consensus       688 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  764 (899)
T TIGR02917       688 AKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK  764 (899)
T ss_pred             HHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5555555544321 233444445555555555555555555554332  3334444455555555555555555555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.43  E-value=1.3e-11  Score=143.32  Aligned_cols=327  Identities=9%  Similarity=0.029  Sum_probs=188.7

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...|...|++++|...|.+.+       ...+.....+..+...+...|++++|.++|+++.+.+ +.+..++..+.
T Consensus       469 ~~l~~~~~~~~~~~~A~~~~~~a~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~  540 (899)
T TIGR02917       469 NLLGAIYLGKGDLAKAREAFEKAL-------SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA  540 (899)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHH-------hhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            555566666666666666664443       2222233345555555555566666666666555442 12344444444


Q ss_pred             HHHHccCCCCCCCC------------------CCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 007684          147 YVCSCKCGSESSEN------------------GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM  208 (593)
Q Consensus       147 ~~~~~~~~~~~~~~------------------~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~  208 (593)
                      ..+...+..+.+..                  +...+.+.|+.++|.++++.+.... +.+..+|..+..++...|++++
T Consensus       541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  619 (899)
T TIGR02917       541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK  619 (899)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            44443321111000                  0011223467888888888877654 5566778888888888888888


Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       209 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      |...++++.+..- .+...+..+..+|.+.|+.++|.++++++.+.. +.+..++..+...+...|+.++|..+++.+.+
T Consensus       620 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  697 (899)
T TIGR02917       620 AVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK  697 (899)
T ss_pred             HHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            8888888776431 235567777788888888888888888877532 23456677788888888888888888888876


Q ss_pred             ccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCccccccccc
Q 007684          289 LVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCI  368 (593)
Q Consensus       289 ~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~  368 (593)
                      .. ..+...+..+...+...+..+.+      ......+.......  .         +.......+...+..+++.+.+
T Consensus       698 ~~-~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~~~~~~~~--~---------~~~~l~~~~~~~g~~~~A~~~~  759 (899)
T TIGR02917       698 QH-PKAALGFELEGDLYLRQKDYPAA------IQAYRKALKRAPSS--Q---------NAIKLHRALLASGNTAEAVKTL  759 (899)
T ss_pred             hC-cCChHHHHHHHHHHHHCCCHHHH------HHHHHHHHhhCCCc--h---------HHHHHHHHHHHCCCHHHHHHHH
Confidence            43 23444555555555443322211      12222222111100  0         1112223334445555565544


Q ss_pred             C----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccC
Q 007684          369 D----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQ  422 (593)
Q Consensus       369 ~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~  422 (593)
                      .    ..|.+...+..+...|...|+.++|.+.|+++++..++...+..++...+...
T Consensus       760 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       760 EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            4    55677778888888899999999999999999987765444444433333333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=8.1e-10  Score=109.24  Aligned_cols=375  Identities=16%  Similarity=0.112  Sum_probs=240.6

Q ss_pred             ccHHHHHHHHHHh----CCChhhHHhhcCCccccch-HHHHH--HHhcCCCcccCCC-CcccccchH------Hh-----
Q 007684           35 HTYRSLLCWHMHS----FTKPITDIKQNRFSADLTT-GLCTL--AFSKKSTVNESSA-PNTGTMSNK------SK-----   95 (593)
Q Consensus        35 ~~~~~ll~~~~~~----~~~~~~~m~~~g~~~~~~~-~~li~--~~~~~g~~~~a~~-~~~~~~~~~------~~-----   95 (593)
                      .+=|.|+...+..    +--++..|.+.|.++.... -.|+.  .|-....+--|+. .|-++-+..      ++     
T Consensus       117 ~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA  196 (625)
T KOG4422|consen  117 ETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA  196 (625)
T ss_pred             cchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence            3447788777744    5567889999998887777 33333  3433333322211 111111000      00     


Q ss_pred             --hhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHH
Q 007684           96 --KKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR  173 (593)
Q Consensus        96 --~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~  173 (593)
                        .-+-.+..+.+|.+||.+.||-...+.|.+++++-.....+.+..+||.+|.+-+-.                    .
T Consensus       197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--------------------~  256 (625)
T KOG4422|consen  197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--------------------V  256 (625)
T ss_pred             HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--------------------c
Confidence              012234456779999999999999999999999999888899999999999854432                    2


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH-HHHHH
Q 007684          174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM----AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK-AYEVD  248 (593)
Q Consensus       174 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~-A~~l~  248 (593)
                      ..++..+|....+.||..|||+++++.++.|+++.    |.+++.+|++.|+.|.+.+|..+|.-+++.++..+ |..+.
T Consensus       257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i  336 (625)
T KOG4422|consen  257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI  336 (625)
T ss_pred             cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence            37899999999999999999999999999998765    56889999999999999999999999999888744 34444


Q ss_pred             HHHHh----CCCC-------------------------------------------CCHH---HHHHHHHHHHhcCCHHH
Q 007684          249 AHMGE----SGVV-------------------------------------------PEEP---ELSALLKLSVDAKKVDK  278 (593)
Q Consensus       249 ~~m~~----~g~~-------------------------------------------p~~~---t~~~Ll~~~~~~g~~~~  278 (593)
                      .++..    +.++                                           |+..   -|..++.+.|.....+.
T Consensus       337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~  416 (625)
T KOG4422|consen  337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV  416 (625)
T ss_pred             HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44331    1111                                           1111   13445555555566788


Q ss_pred             HHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHH---------Hhhhc--CCCcccccccccCCceEE
Q 007684          279 VYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVR---------EGIVR--GGGGWHGQGWLGSGKWRV  347 (593)
Q Consensus       279 a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~--~g~~~~g~~~~~~~~~~v  347 (593)
                      .+..|+.|.-+-.-|...+...++.+....+..+.-.+.|......         +.|..  ...+.|..+-       .
T Consensus       417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp-------~  489 (625)
T KOG4422|consen  417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTP-------E  489 (625)
T ss_pred             HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCCh-------H
Confidence            8899999999999999999999999999999999888999763222         22221  1123332210       0


Q ss_pred             EEecccCCCCcCc--------ccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCc-Ceeeecccee
Q 007684          348 ERTQIDENGVCCS--------CNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPF-DAVIDGANVG  418 (593)
Q Consensus       348 ~~~~i~~~g~c~~--------~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~-d~vidg~nv~  418 (593)
                      ...+-....+|-.        ..+-++..+++   ...++....-+.+.|+.++|.++|.-++++|... -.-.-++.+-
T Consensus       490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~---~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E  566 (625)
T KOG4422|consen  490 REQLQVAFAKCAADIKEAYESQPIRQRAQDWP---ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE  566 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC---hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence            0001111122210        00111111111   2345555666889999999999999998765321 1111112222


Q ss_pred             cccCC--CCChhhHHHHHHHHHh
Q 007684          419 LVNQH--NFSFYQLNTVVNRLRQ  439 (593)
Q Consensus       419 ~~~~~--~~~~~~l~~vv~~l~~  439 (593)
                      ++...  ..++.|.-.+++....
T Consensus       567 l~d~a~~~~spsqA~~~lQ~a~~  589 (625)
T KOG4422|consen  567 LMDSAKVSNSPSQAIEVLQLASA  589 (625)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Confidence            22111  3366777777777754

>PF13041 PPR_2: PPR repeat family

Probab=99.29  E-value=5.1e-12  Score=90.45  Aligned_cols=49  Identities=22%  Similarity=0.493  Sum_probs=24.2

Q ss_pred             CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007684          223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV  271 (593)
Q Consensus       223 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~  271 (593)
                      ||..+||++|.+|++.|++++|+++|++|.+.|++||..||+.||++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4444445555555555555555555555544445555555555544443

>PF13041 PPR_2: PPR repeat family

Probab=99.27  E-value=8.1e-12  Score=89.37  Aligned_cols=50  Identities=30%  Similarity=0.467  Sum_probs=48.0

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 007684          188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK  237 (593)
Q Consensus       188 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~  237 (593)
                      ||..+||++|++|++.|++++|+++|++|++.|+.||..||+.+|++||+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999999999999999999999999999999999985

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.20  E-value=3e-09  Score=118.69  Aligned_cols=298  Identities=9%  Similarity=-0.021  Sum_probs=203.1

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~l  145 (593)
                      -.++..+.+.|+.++|..++...+       ...+.+...+..++.++...|++++|...|+++.+.  .|+. ..+..+
T Consensus        46 ~~~~~~~~~~g~~~~A~~l~~~~l-------~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~l  116 (656)
T PRK15174         46 ILFAIACLRKDETDVGLTLLSDRV-------LTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLV  116 (656)
T ss_pred             HHHHHHHHhcCCcchhHHHhHHHH-------HhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence            567778899999999999997777       555666666777778888899999999999999887  4544 444444


Q ss_pred             HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684          146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL  225 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  225 (593)
                      -.++...                |+.++|.+.|++..+.. +.+...+..+..++...|+.++|...++++....  |+.
T Consensus       117 a~~l~~~----------------g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~  177 (656)
T PRK15174        117 ASVLLKS----------------KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPR  177 (656)
T ss_pred             HHHHHHc----------------CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCC
Confidence            4466665                69999999999998764 4567788899999999999999999999887643  433


Q ss_pred             -ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007684          226 -RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDW  304 (593)
Q Consensus       226 -~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~  304 (593)
                       ..+.. +..+.+.|+.++|.++++.+....-.++...+..+..++...|+.++|...+++..+... -+...+..+-..
T Consensus       178 ~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~  255 (656)
T PRK15174        178 GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLA  255 (656)
T ss_pred             HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence             23332 345888999999999999987654334455566667888899999999999999987432 233344444444


Q ss_pred             Hhcchhhhhccccchhh-hHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHH
Q 007684          305 FDSVDAAEIGVLNWDVS-KVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFA  379 (593)
Q Consensus       305 ~~~~~~~~~~~~~~d~~-~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~  379 (593)
                      +...+......  -.+. .+.+++...-.  +         ..+...+...+..-+..++|+..++    +.|.+...+.
T Consensus       256 l~~~G~~~eA~--~~A~~~~~~Al~l~P~--~---------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~  322 (656)
T PRK15174        256 YYQSGRSREAK--LQAAEHWRHALQFNSD--N---------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA  322 (656)
T ss_pred             HHHcCCchhhH--HHHHHHHHHHHhhCCC--C---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            44333222100  0011 11222211100  0         0011112222223344555555544    6777777777


Q ss_pred             HHHHHHhhhhhhHHhHHHHHHHHHhcCC
Q 007684          380 SSLSNLACQREVRSDFNKFQEWLGRHGP  407 (593)
Q Consensus       380 ~~i~~l~~~~~~~~a~~~f~~~l~~~~~  407 (593)
                      .+...|...|+.++|+..|++.++.++.
T Consensus       323 ~La~~l~~~G~~~eA~~~l~~al~~~P~  350 (656)
T PRK15174        323 MYARALRQVGQYTAASDEFVQLAREKGV  350 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            7888899999999999999999987553

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.11  E-value=1.1e-08  Score=114.24  Aligned_cols=295  Identities=8%  Similarity=-0.011  Sum_probs=189.3

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~l  145 (593)
                      ..+..+....|++++|...+++.+       ...+.....+..+...+.+.|++++|...++++.+.  .|+ ...+..+
T Consensus        80 ~~l~~~~l~~g~~~~A~~~l~~~l-------~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~l  150 (656)
T PRK15174         80 RRWVISPLASSQPDAVLQVVNKLL-------AVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALH  150 (656)
T ss_pred             HHHhhhHhhcCCHHHHHHHHHHHH-------HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            556667778999999999997766       444555667888888999999999999999998876  444 4566666


Q ss_pred             HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684          146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL  225 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  225 (593)
                      ..++...                |+.++|.+.++.+..... .+...+..+ ..+...|++++|..+++.+.+..-.++.
T Consensus       151 a~~l~~~----------------g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~  212 (656)
T PRK15174        151 LRTLVLM----------------DKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQ  212 (656)
T ss_pred             HHHHHHC----------------CChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcch
Confidence            6677776                588888888888766542 233333333 3477788888888888887664322344


Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHccCCCC-HHHHHH
Q 007684          226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK----VYEILHRLRTLVRQVS-ESTFKI  300 (593)
Q Consensus       226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~----a~~~l~~m~~~~~~~~-~~t~~~  300 (593)
                      ..+..+..++.+.|+.++|.+.+++..+.. .-+...+..+...+...|+.++    |...+++..+.  .|+ ...+..
T Consensus       213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~  289 (656)
T PRK15174        213 ESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTL  289 (656)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHH
Confidence            455556677888888888888888887643 2245557778888888888775    77888887663  343 334444


Q ss_pred             HHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHH
Q 007684          301 IEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETE  376 (593)
Q Consensus       301 l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~  376 (593)
                      +-..+...+..+.+.     ..+.+++...-.  +..         +...+...+...+..++|++.++    ..|.+..
T Consensus       290 lg~~l~~~g~~~eA~-----~~l~~al~l~P~--~~~---------a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~  353 (656)
T PRK15174        290 YADALIRTGQNEKAI-----PLLQQSLATHPD--LPY---------VRAMYARALRQVGQYTAASDEFVQLAREKGVTSK  353 (656)
T ss_pred             HHHHHHHCCCHHHHH-----HHHHHHHHhCCC--CHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence            444443333222111     122222221110  100         01112222333455566666665    4555444


Q ss_pred             HHHHHHHHHhhhhhhHHhHHHHHHHHHhcCC
Q 007684          377 NFASSLSNLACQREVRSDFNKFQEWLGRHGP  407 (593)
Q Consensus       377 ~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~  407 (593)
                      .+......+...|+.++|.+.|++.++..+.
T Consensus       354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            4444556788999999999999999987654

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=2.7e-09  Score=105.63  Aligned_cols=215  Identities=12%  Similarity=0.117  Sum_probs=129.6

Q ss_pred             CCccccccccccccCchhHHHhhhccccccCCCcccHHHHHHHHHHh-CCChhhHHhhcCCccccch-HHHHHHHhcCCC
Q 007684            1 MLRGNFLTPSLIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHS-FTKPITDIKQNRFSADLTT-GLCTLAFSKKST   78 (593)
Q Consensus         1 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~pd~~~~~~ll~~~~~~-~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~   78 (593)
                      ||+|-|.-.++-||-.++.-.-..    ..+-+.-+||.+|.+-+-. -.+++.+|.+....||..| |.++++.++.|+
T Consensus       213 mI~Gl~K~~~~ERA~~L~kE~~~~----k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~  288 (625)
T KOG4422|consen  213 MIAGLCKFSSLERARELYKEHRAA----KGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGK  288 (625)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHh----hheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence            455666656666665555532221    1233445556666544432 4566677777777777777 777777777777


Q ss_pred             cccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHC--C--CCC----CHHHHHHHHHHH
Q 007684           79 VNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFE-ALRLYDDARSN--G--ITL----SQHHYNVLLYVC  149 (593)
Q Consensus        79 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~--g--~~p----~~~ty~~ll~~~  149 (593)
                      ++.|...+.+++.+++.  -|..|.-..|..+|..+++.++..+ |..++.++...  |  ++|    |..-|-+-+..|
T Consensus       289 F~~ar~aalqil~EmKe--iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic  366 (625)
T KOG4422|consen  289 FEDARKAALQILGEMKE--IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC  366 (625)
T ss_pred             hHHHHHHHHHHHHHHHH--hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence            77777776666632222  4445555557777777666665533 44444444322  2  222    234444556666


Q ss_pred             HccCCCCCCCCCC--------------------------CcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684          150 SCKCGSESSENGD--------------------------RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK  203 (593)
Q Consensus       150 ~~~~~~~~~~~~~--------------------------~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~  203 (593)
                      ....+.+.+.+++                          +..|.....+.....|+.|.-.-+-|+..+..-++++..-.
T Consensus       367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~  446 (625)
T KOG4422|consen  367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA  446 (625)
T ss_pred             HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence            6554444333221                          11233345667777888887777778889999999999999


Q ss_pred             CChHHHHHHHHHHHhCCC
Q 007684          204 EDPEMAFDLVKQMKSFGI  221 (593)
Q Consensus       204 g~~~~A~~l~~~m~~~g~  221 (593)
                      +.++-.-+++.+|+..|-
T Consensus       447 ~~~e~ipRiw~D~~~~gh  464 (625)
T KOG4422|consen  447 NRLEVIPRIWKDSKEYGH  464 (625)
T ss_pred             CcchhHHHHHHHHHHhhh
Confidence            999998888888887763

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.01  E-value=9.4e-09  Score=106.09  Aligned_cols=216  Identities=12%  Similarity=0.081  Sum_probs=151.5

Q ss_pred             cccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 007684          166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKA  244 (593)
Q Consensus       166 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A  244 (593)
                      ..+|.++.|++.|++..+.. +--..+|++|..++-..|++.+|.+.+++...  +.|+ ..+.+.|...|...|.+++|
T Consensus       297 yeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A  373 (966)
T KOG4626|consen  297 YEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEA  373 (966)
T ss_pred             eccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHH
Confidence            34589999999999988764 33457899999999999999999999998877  3465 56778899999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhH
Q 007684          245 YEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKV  323 (593)
Q Consensus       245 ~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~  323 (593)
                      ..+|....+  +.|+... .+.|...|-..|+.++|...+++..+  +.|+.      ...+.+.|+..           
T Consensus       374 ~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f------Ada~~NmGnt~-----------  432 (966)
T KOG4626|consen  374 TRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF------ADALSNMGNTY-----------  432 (966)
T ss_pred             HHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH------HHHHHhcchHH-----------
Confidence            999998774  4566544 88999999999999999999988865  44432      12222222111           


Q ss_pred             HHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccc----cccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 007684          324 REGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERL----VCIDIDPRETENFASSLSNLACQREVRSDFNKFQ  399 (593)
Q Consensus       324 ~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al----~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~  399 (593)
                       +.                               -+....|+    +.|.+.|.-.+.++.+-+.|-..|.+.+|+..|+
T Consensus       433 -ke-------------------------------~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~  480 (966)
T KOG4626|consen  433 -KE-------------------------------MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR  480 (966)
T ss_pred             -HH-------------------------------hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence             00                               01122232    3455778878889999999999999999999999


Q ss_pred             HHHHhcCCcCeeeeccceecccCC---CCCh-hhHHHHHHHHHh
Q 007684          400 EWLGRHGPFDAVIDGANVGLVNQH---NFSF-YQLNTVVNRLRQ  439 (593)
Q Consensus       400 ~~l~~~~~~d~vidg~nv~~~~~~---~~~~-~~l~~vv~~l~~  439 (593)
                      +-++-.+.|  -=-+.|....-|-   .-+. ...+++++..++
T Consensus       481 ~aLklkPDf--pdA~cNllh~lq~vcdw~D~d~~~~kl~sivrd  522 (966)
T KOG4626|consen  481 TALKLKPDF--PDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRD  522 (966)
T ss_pred             HHHccCCCC--chhhhHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            998765543  2234444433322   1111 144555555555

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.91  E-value=3.4e-08  Score=105.91  Aligned_cols=99  Identities=17%  Similarity=-0.022  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684          208 MAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       208 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~  287 (593)
                      -..++....+...-.|+..+|..++.+-..+|+++.|..++.+|++.|+..+..-|..||-+   .+...-+..+++-|.
T Consensus       187 pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq  263 (1088)
T KOG4318|consen  187 PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ  263 (1088)
T ss_pred             hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH
Confidence            34444444443222588899999999999999999999999999999998888888888766   777788888889999


Q ss_pred             HccCCCCHHHHHHHHHHHhcch
Q 007684          288 TLVRQVSESTFKIIEDWFDSVD  309 (593)
Q Consensus       288 ~~~~~~~~~t~~~l~~~~~~~~  309 (593)
                      +.|++|+.+|+..-.--+.+++
T Consensus       264 e~gv~p~seT~adyvip~l~N~  285 (1088)
T KOG4318|consen  264 EKGVQPGSETQADYVIPQLSNG  285 (1088)
T ss_pred             HhcCCCCcchhHHHHHhhhcch
Confidence            9999999999865444443343

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.85  E-value=1.6e-07  Score=104.90  Aligned_cols=234  Identities=14%  Similarity=0.010  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      .++.+...+...|++++|+..|++..+.  .|+ ...|..+-..+...                |++++|.+.|++..+.
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~----------------g~~~eA~~~~~~al~~  394 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLEL----------------GDPDKAEEDFDKALKL  394 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHh
Confidence            4777778888889999999999988776  444 34555555555554                5899999999988776


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPEL  263 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  263 (593)
                      . +-+..+|..+...+...|++++|...|++..+.  .|+ ...+..+...+.+.|+.++|+..|++..... .-+...+
T Consensus       395 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~  470 (615)
T TIGR00990       395 N-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVY  470 (615)
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH
Confidence            5 456778888888899999999999999988774  354 5567777888888999999999999887532 2235668


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCC
Q 007684          264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSG  343 (593)
Q Consensus       264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~  343 (593)
                      +.+..++...|++++|.+.|++..+....... ++..+..++..........+                           
T Consensus       471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~~---------------------------  522 (615)
T TIGR00990       471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWKQ---------------------------  522 (615)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHhh---------------------------
Confidence            88888888999999999999888764322111 11111111110000000000                           


Q ss_pred             ceEEEEecccCCCCcCcccccccc----cCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          344 KWRVERTQIDENGVCCSCNERLVC----IDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       344 ~~~v~~~~i~~~g~c~~~~~al~~----~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                                      ...+|++.    +.+.|.+...+..+...+...|+.++|++.|++.++..
T Consensus       523 ----------------~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~  572 (615)
T TIGR00990       523 ----------------DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA  572 (615)
T ss_pred             ----------------hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence                            11111111    22455566678888899999999999999999987654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.84  E-value=7.2e-09  Score=103.75  Aligned_cols=257  Identities=14%  Similarity=0.132  Sum_probs=92.3

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARR--ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNV  144 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~  144 (593)
                      -.+...+.+.|++++|.+++....       ...  ..+...+..+...+-..++.+.|...++++.+.+.. +...+..
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~-------~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~   83 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAA-------QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYER   83 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence            344667889999999999995443       122  223334666666777789999999999999877543 5566666


Q ss_pred             HHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q 007684          145 LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPP  223 (593)
Q Consensus       145 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p  223 (593)
                      ++..+ ..                ++.++|.++++...+..  ++...+..++..+...++++++.+++++..... ..+
T Consensus        84 l~~l~-~~----------------~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~  144 (280)
T PF13429_consen   84 LIQLL-QD----------------GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD  144 (280)
T ss_dssp             -----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T
T ss_pred             ccccc-cc----------------ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC
Confidence            76663 32                48899999988776543  566677888888999999999999999987532 335


Q ss_pred             CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 007684          224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIE  302 (593)
Q Consensus       224 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~  302 (593)
                      +...|..+...+.+.|+.++|.+.+++..+..  |+ ....+.++..+...|+.+++.+++....+.. ..++..+..+.
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la  221 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALA  221 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence            56778888888999999999999999988643  65 5568889999999999999888888887643 33344444555


Q ss_pred             HHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHH
Q 007684          303 DWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENF  378 (593)
Q Consensus       303 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~  378 (593)
                      ..+...+..                                                  ++|+..++    ..|.|...+
T Consensus       222 ~~~~~lg~~--------------------------------------------------~~Al~~~~~~~~~~p~d~~~~  251 (280)
T PF13429_consen  222 AAYLQLGRY--------------------------------------------------EEALEYLEKALKLNPDDPLWL  251 (280)
T ss_dssp             HHHHHHT-H--------------------------------------------------HHHHHHHHHHHHHSTT-HHHH
T ss_pred             HHhcccccc--------------------------------------------------ccccccccccccccccccccc
Confidence            444333322                                                  22333222    345677777


Q ss_pred             HHHHHHHhhhhhhHHhHHHHHHHHH
Q 007684          379 ASSLSNLACQREVRSDFNKFQEWLG  403 (593)
Q Consensus       379 ~~~i~~l~~~~~~~~a~~~f~~~l~  403 (593)
                      ......+...|+.++|..+.++...
T Consensus       252 ~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  252 LAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccc
Confidence            7788888888888888888876543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.80  E-value=3.1e-08  Score=102.31  Aligned_cols=307  Identities=9%  Similarity=0.039  Sum_probs=191.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCC-----------------------
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSE-----------------------  159 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~-----------------------  159 (593)
                      .++|..+-+.+-..|++++|+.+|+.|.+.  +| .+..|.-+-.++..++..+.+-                       
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL  193 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL  193 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence            445777777777777777777777777765  33 2334444444444444433221                       


Q ss_pred             -----------------------------CCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007684          160 -----------------------------NGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF  210 (593)
Q Consensus       160 -----------------------------~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~  210 (593)
                                                   .+-.-+-.+|+..+|+..|++..... +--.-+|-+|-..|...+.+|.|.
T Consensus       194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Av  272 (966)
T KOG4626|consen  194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAV  272 (966)
T ss_pred             HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHH
Confidence                                         00011123577888888888777543 222357888888888888888888


Q ss_pred             HHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          211 DLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       211 ~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ..+.+...  ..|+ ...|..|...|-.+|.+|.|++.|++..+  +.|+. ..|+.|..++-..|++.+|...+.+...
T Consensus       273 s~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~  348 (966)
T KOG4626|consen  273 SCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR  348 (966)
T ss_pred             HHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence            88877665  4566 57788888888899999999999998875  44554 4599999999999999999999998876


Q ss_pred             ccCCCCH-HHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccc
Q 007684          289 LVRQVSE-STFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVC  367 (593)
Q Consensus       289 ~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~  367 (593)
                        ..|+. ...+-|-+.|...+.++.+-+     ...+++.-.-.           --...+.+...+..-+..++|+..
T Consensus       349 --l~p~hadam~NLgni~~E~~~~e~A~~-----ly~~al~v~p~-----------~aaa~nNLa~i~kqqgnl~~Ai~~  410 (966)
T KOG4626|consen  349 --LCPNHADAMNNLGNIYREQGKIEEATR-----LYLKALEVFPE-----------FAAAHNNLASIYKQQGNLDDAIMC  410 (966)
T ss_pred             --hCCccHHHHHHHHHHHHHhccchHHHH-----HHHHHHhhChh-----------hhhhhhhHHHHHHhcccHHHHHHH
Confidence              23322 222333333322222221111     11111110000           000123344445555666777665


Q ss_pred             cC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhh
Q 007684          368 ID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQM  440 (593)
Q Consensus       368 ~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~  440 (593)
                      +.    +.|.-...|..+.+.|-..|++.+|...|.+.+.-++.|-....++-+.|-     +.+-+.++++.++..
T Consensus       411 YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k-----DsGni~~AI~sY~~a  482 (966)
T KOG4626|consen  411 YKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK-----DSGNIPEAIQSYRTA  482 (966)
T ss_pred             HHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh-----ccCCcHHHHHHHHHH
Confidence            44    788777888888899999999999999999888777666444433333332     224567777777663

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.79  E-value=6.5e-07  Score=85.91  Aligned_cols=188  Identities=15%  Similarity=0.046  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      ..+..+...+...|++++|...++++.+.. +.+...+..+...+...                |++++|.+.|++..+.
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~al~~   94 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQL----------------GELEKAEDSFRRALTL   94 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHhh
Confidence            346667777777777777777777776552 12344444444555554                4777777777777665


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPEL  263 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  263 (593)
                      . +.+...+..+...+...|++++|.+.+++.......|. ...+..+...+...|+.++|...+++.....- .+...+
T Consensus        95 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~  172 (234)
T TIGR02521        95 N-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESL  172 (234)
T ss_pred             C-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHH
Confidence            4 34556667777777777777777777777765322222 34555566777777777777777777665321 234456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhh
Q 007684          264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAE  312 (593)
Q Consensus       264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~  312 (593)
                      ..+...+...|+.++|...+++..+. ...+...+..+...+...++.+
T Consensus       173 ~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  220 (234)
T TIGR02521       173 LELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVA  220 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHH
Confidence            66777777777777777777777664 2233444444444444444333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.76  E-value=1.3e-06  Score=104.36  Aligned_cols=203  Identities=14%  Similarity=0.066  Sum_probs=141.8

Q ss_pred             HHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 007684           68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGIT-LSQHHYNVLL  146 (593)
Q Consensus        68 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ty~~ll  146 (593)
                      ..-.++...|++++|+..|++.+       ...+.+...+..+...+.+.|++++|+..|++..+..-. ++...|..++
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL-------~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll  346 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAV-------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL  346 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence            34556778999999999997776       334556677889999999999999999999998876321 1222232222


Q ss_pred             HH--HHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684          147 YV--CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK  224 (593)
Q Consensus       147 ~~--~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  224 (593)
                      ..  |....      ..-+.+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|++..+..  |+
T Consensus       347 ~~~~~~~~~------~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~  417 (1157)
T PRK11447        347 KVNRYWLLI------QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PG  417 (1157)
T ss_pred             HhhhHHHHH------HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC
Confidence            10  00000      00001112368999999999988765 4566778888899999999999999999887632  33


Q ss_pred             -cccHH------------------------------------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H
Q 007684          225 -LRSYG------------------------------------------PALFGFCKLGNTDKAYEVDAHMGESGVVPE-E  260 (593)
Q Consensus       225 -~~ty~------------------------------------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~  260 (593)
                       ...+.                                          .+...+...|+.++|.+.|++..+..  |+ .
T Consensus       418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~  495 (1157)
T PRK11447        418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSV  495 (1157)
T ss_pred             CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH
Confidence             22221                                          22334556789999999999887643  54 4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          261 PELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ..+..+...|.+.|+.++|...++++.+
T Consensus       496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~  523 (1157)
T PRK11447        496 WLTYRLAQDLRQAGQRSQADALMRRLAQ  523 (1157)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567788899999999999999999876

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.73  E-value=4.7e-06  Score=79.87  Aligned_cols=167  Identities=11%  Similarity=-0.001  Sum_probs=132.4

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684          102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      .....+..+...+...|++++|.+.+++..+..- .+...+..+-..+...                |++++|.+.|++.
T Consensus        63 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~----------------g~~~~A~~~~~~~  125 (234)
T TIGR02521        63 DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQ----------------GKYEQAMQQFEQA  125 (234)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc----------------ccHHHHHHHHHHH
Confidence            3445688888999999999999999999887642 2444555555566554                6999999999999


Q ss_pred             HhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 007684          182 ITDKV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE  259 (593)
Q Consensus       182 ~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  259 (593)
                      ..... ......+..+...+...|++++|.+.+++..+..  |+ ...+..+...+...|+.++|.+.+++.... ...+
T Consensus       126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~  202 (234)
T TIGR02521       126 IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQT  202 (234)
T ss_pred             HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Confidence            87532 2344567778889999999999999999998743  43 567888899999999999999999998876 3345


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          260 EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       260 ~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ...+..+...+...|+.++|..+.+.+..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       203 AESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            66677888888899999999998888765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF12854 PPR_1: PPR repeat

Probab=98.66  E-value=2.2e-08  Score=64.70  Aligned_cols=32  Identities=34%  Similarity=0.735  Sum_probs=14.9

Q ss_pred             CCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684          220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       220 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m  251 (593)
                      |+.||..|||+||.+||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444444444444444444444444444

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.65  E-value=1.6e-06  Score=103.49  Aligned_cols=203  Identities=10%  Similarity=-0.038  Sum_probs=128.0

Q ss_pred             HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007684           70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC  149 (593)
Q Consensus        70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~  149 (593)
                      -..+.+.|++++|+..+.+.+       ...+.+...+..+...+.+.|++++|++.|+++.+.. +.+...+..+..++
T Consensus       358 g~~~~~~g~~~eA~~~~~~Al-------~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~  429 (1157)
T PRK11447        358 GDAALKANNLAQAERLYQQAR-------QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY  429 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            345778999999999997766       3334455667888999999999999999999998763 12344555554455


Q ss_pred             HccCCCCCCCCC---------------------------CCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684          150 SCKCGSESSENG---------------------------DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA  202 (593)
Q Consensus       150 ~~~~~~~~~~~~---------------------------~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~  202 (593)
                      ...+ .+.+...                           ...+...|++++|.+.|++..+.. +-+...+..+...|.+
T Consensus       430 ~~~~-~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        430 RQQS-PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HhcC-HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            3321 1111000                           011223578888888888877655 3355667777778888


Q ss_pred             cCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHh
Q 007684          203 KEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP---------ELSALLKLSVD  272 (593)
Q Consensus       203 ~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~Ll~~~~~  272 (593)
                      .|++++|...++++.+.  .|+ ...+-.+...+.+.|+.++|.+.++.+......++..         .+..+...+..
T Consensus       508 ~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~  585 (1157)
T PRK11447        508 AGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD  585 (1157)
T ss_pred             cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence            88888888888887652  243 2233333344556777778877777654322222211         12234556667


Q ss_pred             cCCHHHHHHHHH
Q 007684          273 AKKVDKVYEILH  284 (593)
Q Consensus       273 ~g~~~~a~~~l~  284 (593)
                      .|+.++|.++++
T Consensus       586 ~G~~~eA~~~l~  597 (1157)
T PRK11447        586 SGKEAEAEALLR  597 (1157)
T ss_pred             CCCHHHHHHHHH
Confidence            777777777766

>PF12854 PPR_1: PPR repeat

Probab=98.64  E-value=3.7e-08  Score=63.64  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=32.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684          184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK  217 (593)
Q Consensus       184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~  217 (593)
                      +|+.||..|||+||.+||+.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4889999999999999999999999999999984

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.64  E-value=6.4e-07  Score=96.42  Aligned_cols=226  Identities=15%  Similarity=0.140  Sum_probs=152.6

Q ss_pred             cccCCCcccHHHHHHHHHHh----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCC
Q 007684           28 LMHQSNCHTYRSLLCWHMHS----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRES  102 (593)
Q Consensus        28 ~~~~pd~~~~~~ll~~~~~~----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  102 (593)
                      ..++||-+||.++|..||..    +-.++.-|+-+.++.+... +.++.+...+++.+.+.                 .+
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------------ep   81 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------------EP   81 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-----------------CC
Confidence            45778889999999999844    3337888888888888888 88888888777776665                 34


Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHC-------CCCCCHHHHHHHHHHHHccCCCCCCC---------------
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDD-ARSN-------GITLSQHHYNVLLYVCSCKCGSESSE---------------  159 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~-------g~~p~~~ty~~ll~~~~~~~~~~~~~---------------  159 (593)
                      -.++|..|+.+|...||+.. ++..++ |...       |+---...+-..+++|... .-+...               
T Consensus        82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~-lpda~n~illlv~eglwaqll  159 (1088)
T KOG4318|consen   82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHS-LPDAENAILLLVLEGLWAQLL  159 (1088)
T ss_pred             chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCccc-chhHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999876 333333 2211       2111111111111111111 000000               


Q ss_pred             CCC--Cc-ccccc-----------cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684          160 NGD--RE-NDSNL-----------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL  225 (593)
Q Consensus       160 ~~~--~~-~~~~g-----------~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  225 (593)
                      +++  -+ +...+           ...-..++.+..+.-.-.|+..+|.+++.....+|+.+.|..++.+|++.|+..+.
T Consensus       160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~  239 (1088)
T KOG4318|consen  160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA  239 (1088)
T ss_pred             HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence            000  00 00011           11122233333322111599999999999999999999999999999999998888


Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007684          226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK  275 (593)
Q Consensus       226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~  275 (593)
                      .-|-++|-+   .++...++.+.+-|.+.|+.|+..|+..-+..+.++|.
T Consensus       240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            888999888   88999999999999999999999999888877777554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.62  E-value=2.6e-06  Score=95.08  Aligned_cols=241  Identities=10%  Similarity=-0.054  Sum_probs=163.6

Q ss_pred             ChhhHHhhcC-Cccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007684           50 KPITDIKQNR-FSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRL  126 (593)
Q Consensus        50 ~~~~~m~~~g-~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l  126 (593)
                      ..+....+.+ ..|+...  ..+-..+...|++++|...+.+.+       ...+.....|..+...+...|++++|...
T Consensus       315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal-------~l~P~~~~~~~~la~~~~~~g~~~eA~~~  387 (615)
T TIGR00990       315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI-------ELDPRVTQSYIKRASMNLELGDPDKAEED  387 (615)
T ss_pred             HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3344444433 3344333  666777888999999999986665       33344455688888888899999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 007684          127 YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP  206 (593)
Q Consensus       127 ~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~  206 (593)
                      |+++.+.. +-+...|..+-.++...                |++++|.+.|++..+.. +.+...+..+..++.+.|++
T Consensus       388 ~~~al~~~-p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~  449 (615)
T TIGR00990       388 FDKALKLN-SEDPDIYYHRAQLHFIK----------------GEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSI  449 (615)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCH
Confidence            99887763 22456666666666665                58888999888887765 44567777888888888999


Q ss_pred             HHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHH
Q 007684          207 EMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV-----PEEP-ELSALLKLSVDAKKVDKV  279 (593)
Q Consensus       207 ~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~Ll~~~~~~g~~~~a  279 (593)
                      ++|+..+++..+.  .|+ ...|+.+...+...|++++|.+.|+...+..-.     .+.. .++..+..+...|++++|
T Consensus       450 ~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA  527 (615)
T TIGR00990       450 ASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA  527 (615)
T ss_pred             HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence            9999888888763  354 567888888888888898898888887653211     1111 122233334446888888


Q ss_pred             HHHHHHHHHccCCCCH-HHHHHHHHHHhcchhhhhccccch
Q 007684          280 YEILHRLRTLVRQVSE-STFKIIEDWFDSVDAAEIGVLNWD  319 (593)
Q Consensus       280 ~~~l~~m~~~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~d  319 (593)
                      .+++++..+.  .|+. ..+..+...+...+..+.+...++
T Consensus       528 ~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e  566 (615)
T TIGR00990       528 ENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFE  566 (615)
T ss_pred             HHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            8888887663  2333 345666666766666665555444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.62  E-value=5.1e-07  Score=90.34  Aligned_cols=186  Identities=13%  Similarity=0.093  Sum_probs=70.8

Q ss_pred             hcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcc
Q 007684           74 SKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNG-ITLSQHHYNVLLYVCSCK  152 (593)
Q Consensus        74 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~ll~~~~~~  152 (593)
                      ...+++++|..+.....       +.. .....+...+..+.+.++++++.++++.+.+.. .+.+...|..+-..+.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~-------~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~  159 (280)
T PF13429_consen   88 LQDGDPEEALKLAEKAY-------ERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL  159 (280)
T ss_dssp             --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred             ccccccccccccccccc-------ccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence            45566666665553333       111 122334555555666666666666666655332 223334444444444443


Q ss_pred             CCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHH
Q 007684          153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL  232 (593)
Q Consensus       153 ~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li  232 (593)
                                      |+.++|.+.|++..+.. +-|....+.++..+...|+.+++.++++...+.. ..|...+..+.
T Consensus       160 ----------------G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la  221 (280)
T PF13429_consen  160 ----------------GDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALA  221 (280)
T ss_dssp             ----------------CHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHH
T ss_pred             ----------------CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence                            46666666666665543 2245555556666666666666666665555432 23344555566


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       233 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      .+|...|+.++|..+|++..... +.|......+.+++...|+.++|.++.++.
T Consensus       222 ~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  222 AAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred             HHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence            66666666666666666655422 123444555556666666666666655544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.58  E-value=3.6e-06  Score=96.06  Aligned_cols=339  Identities=10%  Similarity=0.015  Sum_probs=195.9

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+..++.+.|++++|...+++.+       ...+.....+..+...+...|+.++|+..++++.+.  .|+...+..+-
T Consensus        53 ~~lA~~~~~~g~~~~A~~~~~~al-------~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la  123 (765)
T PRK10049         53 AAVAVAYRNLKQWQNSLTLWQKAL-------SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALA  123 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            677778899999999999986665       333445566778888888999999999999998877  44433355554


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH----------------
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF----------------  210 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~----------------  210 (593)
                      .++...                |+.++|+..++++.+.. +-+...+..+..++...++.++|+                
T Consensus       124 ~~l~~~----------------g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l  186 (765)
T PRK10049        124 YVYKRA----------------GRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDL  186 (765)
T ss_pred             HHHHHC----------------CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHH
Confidence            566654                58888998888888765 335555555666666555555444                


Q ss_pred             ------------------------------HHHHHHHhC-CCCCCcc-cHH----HHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          211 ------------------------------DLVKQMKSF-GIPPKLR-SYG----PALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       211 ------------------------------~l~~~m~~~-g~~p~~~-ty~----~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                                                    +.++.+.+. ...|+.. .+.    ..+.++...|+.++|.+.|+.+.+.
T Consensus       187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~  266 (765)
T PRK10049        187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE  266 (765)
T ss_pred             HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence                                          344444331 1223321 111    1134556779999999999999876


Q ss_pred             CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC---CHHHHHHHHHHHhcchhhhhccccchh-hhHHHhhhc
Q 007684          255 GVV-PEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV---SESTFKIIEDWFDSVDAAEIGVLNWDV-SKVREGIVR  329 (593)
Q Consensus       255 g~~-p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~---~~~t~~~l~~~~~~~~~~~~~~~~~d~-~~~~~~~~~  329 (593)
                      +-. |+... ..+..+|...|++++|...|+++.+.....   .......+...+...+       .+++ ......+..
T Consensus       267 ~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g-------~~~eA~~~l~~~~~  338 (765)
T PRK10049        267 GQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE-------NYPGALTVTAHTIN  338 (765)
T ss_pred             CCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc-------cHHHHHHHHHHHhh
Confidence            532 44322 225678899999999999999987632111   1122233333332222       2222 222222222


Q ss_pred             CCCcc-ccc---ccccCCce-EEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 007684          330 GGGGW-HGQ---GWLGSGKW-RVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQE  400 (593)
Q Consensus       330 ~g~~~-~g~---~~~~~~~~-~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~  400 (593)
                      .-... ...   .-.+...| .+.......+..-+..++|++.++    ..|.+...+..+...+...|+.++|++.+++
T Consensus       339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~  418 (765)
T PRK10049        339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKK  418 (765)
T ss_pred             cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            11000 000   00000000 000011112223345566666655    5677777888888888899999999999999


Q ss_pred             HHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhhC
Q 007684          401 WLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMS  441 (593)
Q Consensus       401 ~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~~  441 (593)
                      .++..+.--.+.-..-..+...+  .+.+.+.+++.+.+..
T Consensus       419 al~l~Pd~~~l~~~~a~~al~~~--~~~~A~~~~~~ll~~~  457 (765)
T PRK10049        419 AEVLEPRNINLEVEQAWTALDLQ--EWRQMDVLTDDVVARE  457 (765)
T ss_pred             HHhhCCCChHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhC
Confidence            88865432112222222333333  4566666666666533

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.54  E-value=1.5e-05  Score=91.91  Aligned_cols=169  Identities=11%  Similarity=-0.014  Sum_probs=124.3

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      ....|..+..++.. ++..+|...|.+....  .|+......+...+...                |++++|...|+++.
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~----------------Gr~eeAi~~~rka~  536 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQV----------------EDYATALAAWQKIS  536 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHC----------------CCHHHHHHHHHHHh
Confidence            34557777777766 8899999988887766  46654322222233343                69999999999976


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 007684          183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP  261 (593)
Q Consensus       183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  261 (593)
                      ..  +|+...+..+..++.+.|+.++|...+++..+..  |+. ..+..+.....+.|+.++|...+++..+.  .|+..
T Consensus       537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~  610 (987)
T PRK09782        537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSAN  610 (987)
T ss_pred             cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHH
Confidence            54  4555667777888999999999999999998754  443 33333334444569999999999998854  46778


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH
Q 007684          262 ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF  298 (593)
Q Consensus       262 t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~  298 (593)
                      .|..+..++.+.|+.++|...+++..+  ..|+...+
T Consensus       611 a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a  645 (987)
T PRK09782        611 AYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNY  645 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHH
Confidence            899999999999999999999999877  34554433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.51  E-value=5.4e-06  Score=87.23  Aligned_cols=252  Identities=8%  Similarity=-0.036  Sum_probs=162.6

Q ss_pred             CCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHccC
Q 007684           76 KSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKC  153 (593)
Q Consensus        76 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll--~~~~~~~  153 (593)
                      .|+++.|+.......       .....|...|-.......+.|+++.|..++.++.+.  .|+...+-.++  ..+... 
T Consensus        97 eGd~~~A~k~l~~~~-------~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~-  166 (398)
T PRK10747         97 EGDYQQVEKLMTRNA-------DHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLAR-  166 (398)
T ss_pred             CCCHHHHHHHHHHHH-------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHC-
Confidence            588888775442111       111223333444445557889999999999998876  55654443222  245544 


Q ss_pred             CCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-------c
Q 007684          154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-------R  226 (593)
Q Consensus       154 ~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~  226 (593)
                                     |+.+.|.+.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++.       .
T Consensus       167 ---------------g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~  230 (398)
T PRK10747        167 ---------------NENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQ  230 (398)
T ss_pred             ---------------CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence                           58999999999998877 556778888999999999999999999999886654322       2


Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHh
Q 007684          227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFD  306 (593)
Q Consensus       227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~  306 (593)
                      +|..++....+..+.+...++++.+.. ..+.+......+..++...|+.++|.+++++..+  ..+++...    ..+.
T Consensus       231 a~~~l~~~~~~~~~~~~l~~~w~~lp~-~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~----~l~~  303 (398)
T PRK10747        231 AWIGLMDQAMADQGSEGLKRWWKNQSR-KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV----LLIP  303 (398)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhCCH-HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH----HHHh
Confidence            333444444455555666666666532 2234666788888899999999999999988876  34454222    1111


Q ss_pred             cchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCccccccccc----CCCHHHHHHHHHHH
Q 007684          307 SVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCI----DIDPRETENFASSL  382 (593)
Q Consensus       307 ~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~----~l~~~~~~~~~~~i  382 (593)
                      ...   .                                             +.-.++++..    ...|.+...+...-
T Consensus       304 ~l~---~---------------------------------------------~~~~~al~~~e~~lk~~P~~~~l~l~lg  335 (398)
T PRK10747        304 RLK---T---------------------------------------------NNPEQLEKVLRQQIKQHGDTPLLWSTLG  335 (398)
T ss_pred             hcc---C---------------------------------------------CChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            100   0                                             0111112211    23456666677777


Q ss_pred             HHHhhhhhhHHhHHHHHHHHHhcCCc
Q 007684          383 SNLACQREVRSDFNKFQEWLGRHGPF  408 (593)
Q Consensus       383 ~~l~~~~~~~~a~~~f~~~l~~~~~~  408 (593)
                      ..+...+++++|.+.|++.++..+..
T Consensus       336 rl~~~~~~~~~A~~~le~al~~~P~~  361 (398)
T PRK10747        336 QLLMKHGEWQEASLAFRAALKQRPDA  361 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence            88888999999999999998875443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.47  E-value=1.8e-05  Score=90.36  Aligned_cols=312  Identities=9%  Similarity=0.016  Sum_probs=186.1

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~l  145 (593)
                      ..+..++...|+.++|...+.+.+       ...+.... +..+..++...|+.++|+..++++.+.  .|+. ..+..+
T Consensus        87 ~~la~~l~~~g~~~eA~~~l~~~l-------~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~l  156 (765)
T PRK10049         87 RGLILTLADAGQYDEALVKAKQLV-------SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEY  156 (765)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH-------HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            777788999999999999997666       33444555 888888899999999999999999987  4443 333334


Q ss_pred             HHHHHccCCCCCCCCCC---------------------------CcccccccH---HHHHHHHHHHHhC-CCCCCHH-HH
Q 007684          146 LYVCSCKCGSESSENGD---------------------------RENDSNLGL---KRGFEIFQQMITD-KVDPNEA-TF  193 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~---------------------------~~~~~~g~~---~~a~~l~~~M~~~-g~~p~~~-ty  193 (593)
                      ..++...+..+.+-..+                           ......+++   ++|++.++.+.+. ...|+.. .+
T Consensus       157 a~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~  236 (765)
T PRK10049        157 VQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY  236 (765)
T ss_pred             HHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence            44444433222110000                           011122334   6788888888753 2223221 11


Q ss_pred             H----HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHH
Q 007684          194 T----SVARLAVAKEDPEMAFDLVKQMKSFGI-PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP---EEPELSA  265 (593)
Q Consensus       194 ~----~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~  265 (593)
                      .    ..+.++...|+.++|...|+++.+.+- .|+..- -.+...|...|++++|..+|+++....-..   .......
T Consensus       237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~  315 (765)
T PRK10049        237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD  315 (765)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence            1    113345677899999999999887652 133211 124668888999999999999877533111   1344666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcc-----------CCCCHH---HHHHHHHHHhcchhhhhccccchhhhHHHhhhcCC
Q 007684          266 LLKLSVDAKKVDKVYEILHRLRTLV-----------RQVSES---TFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGG  331 (593)
Q Consensus       266 Ll~~~~~~g~~~~a~~~l~~m~~~~-----------~~~~~~---t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g  331 (593)
                      |..++.+.|+.++|.++++++.+..           ..|+..   .+..+...+...+..+.+....+     +.+...-
T Consensus       316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~-----~al~~~P  390 (765)
T PRK10049        316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR-----ELAYNAP  390 (765)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH-----HHHHhCC
Confidence            7778889999999999999887642           223432   22333344444443333222211     1111110


Q ss_pred             CcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          332 GGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       332 ~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                      .  +..         +...+...+..-+...+|++.++    +.|.+...+......+...|++++|+..++++++..
T Consensus       391 ~--n~~---------l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~  457 (765)
T PRK10049        391 G--NQG---------LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE  457 (765)
T ss_pred             C--CHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            0  000         00111112222223344444444    677777877788888999999999999999998864

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.44  E-value=1.6e-05  Score=76.89  Aligned_cols=221  Identities=13%  Similarity=0.061  Sum_probs=163.7

Q ss_pred             CCChhhHHhhcCCccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHH----HHHHHHHHHHcCCCHH
Q 007684           48 FTKPITDIKQNRFSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEG----VLRHKLDMCSKRGDVF  121 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~  121 (593)
                      +.++|-+|.+-  .|....  -.|=+.|.+.|.++.|..+....+       .....+..    +.-.|-.-|..+|-++
T Consensus        54 AvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-------~spdlT~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          54 AVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-------ESPDLTFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             HHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-------cCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence            66677777662  233333  666678899999999999986665       22222221    1445666688999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHH----HHHHHH
Q 007684          122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEA----TFTSVA  197 (593)
Q Consensus       122 ~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~----ty~~li  197 (593)
                      .|..+|..+.+.|. .-....--|+..|-..+                +|++|+++-+++.+.+-.+...    -|.-|.
T Consensus       125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~tr----------------eW~KAId~A~~L~k~~~q~~~~eIAqfyCELA  187 (389)
T COG2956         125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATR----------------EWEKAIDVAERLVKLGGQTYRVEIAQFYCELA  187 (389)
T ss_pred             HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence            99999999988652 23344566788888764                8999999999988776444332    456667


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007684          198 RLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV  276 (593)
Q Consensus       198 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~  276 (593)
                      ..+....+.+.|..++++..+.+  |+ ++.--.+-..+...|++++|.+.++...+.+...-..+...|..+|...|+.
T Consensus       188 q~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~  265 (389)
T COG2956         188 QQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP  265 (389)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence            77777899999999999987744  44 4444456678889999999999999999888666667789999999999999


Q ss_pred             HHHHHHHHHHHHccCCCCHH
Q 007684          277 DKVYEILHRLRTLVRQVSES  296 (593)
Q Consensus       277 ~~a~~~l~~m~~~~~~~~~~  296 (593)
                      ++....+.++.+....++..
T Consensus       266 ~~~~~fL~~~~~~~~g~~~~  285 (389)
T COG2956         266 AEGLNFLRRAMETNTGADAE  285 (389)
T ss_pred             HHHHHHHHHHHHccCCccHH
Confidence            99999999998865555543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.43  E-value=1.4e-05  Score=92.31  Aligned_cols=195  Identities=9%  Similarity=0.046  Sum_probs=136.3

Q ss_pred             cccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 007684           62 ADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQH  140 (593)
Q Consensus        62 ~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  140 (593)
                      |+... ..+...+.+.|++++|...++++.       .. .+....+..+...+.+.|+.++|..++++..+..  |+..
T Consensus       507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~-------~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~  576 (987)
T PRK09782        507 PDAWQHRAVAYQAYQVEDYATALAAWQKIS-------LH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDN  576 (987)
T ss_pred             CchHHHHHHHHHHHHCCCHHHHHHHHHHHh-------cc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccH
Confidence            44333 334444567788888877775433       11 1222334555667777888888888888877663  3322


Q ss_pred             -HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007684          141 -HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF  219 (593)
Q Consensus       141 -ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~  219 (593)
                       .+..+.......                |++++|...|++..+..  |+...|..+..++.+.|+.++|...+++....
T Consensus       577 ~l~~~La~~l~~~----------------Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l  638 (987)
T PRK09782        577 ALYWWLHAQRYIP----------------GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALEL  638 (987)
T ss_pred             HHHHHHHHHHHhC----------------CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence             221111122222                58999999999887654  57788888889999999999999999988874


Q ss_pred             CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          220 GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       220 g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                        .|+ ...++.+..++...|+.++|.+++++..+..  |+ ...+..+..++...|+.++|...+++..+
T Consensus       639 --~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        639 --EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence              365 4567777788889999999999999887643  43 45578888888999999999999998876

>PRK12370 invasion protein regulator; Provisional

Probab=98.42  E-value=4.1e-05  Score=84.23  Aligned_cols=180  Identities=10%  Similarity=-0.019  Sum_probs=128.0

Q ss_pred             ccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007684           80 NESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCS---------KRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVC  149 (593)
Q Consensus        80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~  149 (593)
                      ++|...+++.+       ...+.....|..+-.++.         ..+++++|...++++.+.  .| +...+..+-.++
T Consensus       278 ~~A~~~~~~Al-------~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~  348 (553)
T PRK12370        278 QQALKLLTQCV-------NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLIN  348 (553)
T ss_pred             HHHHHHHHHHH-------hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence            45566664444       222333444555544333         335689999999998887  34 445555544455


Q ss_pred             HccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-ccH
Q 007684          150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-RSY  228 (593)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty  228 (593)
                      ...                |++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.  .|+. ..+
T Consensus       349 ~~~----------------g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~  409 (553)
T PRK12370        349 TIH----------------SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG  409 (553)
T ss_pred             HHc----------------cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence            554                59999999999998876 556678888999999999999999999999874  3553 233


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       229 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ..++..+...|+.++|.+.+++..+.. .|+. ..+..+..++...|+.++|...+.++..
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~  469 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST  469 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence            445556777899999999999987543 2443 3467777888899999999999988754

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.40  E-value=1.7e-05  Score=89.70  Aligned_cols=337  Identities=10%  Similarity=0.015  Sum_probs=186.6

Q ss_pred             HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007684           70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC  149 (593)
Q Consensus        70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~  149 (593)
                      ...|...|++++|.+++++++       ...+.....+..++..+.+.++.++|++.++.+...  .|+...|-.++.++
T Consensus       109 A~ly~~~gdyd~Aiely~kaL-------~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~  179 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSL-------KKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLN  179 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHH
Confidence            446666677777777776555       333444455556666677777777777777776655  44545553333333


Q ss_pred             HccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH--------------
Q 007684          150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ--------------  215 (593)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~--------------  215 (593)
                      ...                ++..+|++.++++.+.. +-+...+..++.++.+.|-...|.++.++              
T Consensus       180 ~~~----------------~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~  242 (822)
T PRK14574        180 RAT----------------DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE  242 (822)
T ss_pred             Hhc----------------chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence            322                35556999999998876 55666777777777776665555444432              


Q ss_pred             ----------------------------------HHh-CCCCCC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684          216 ----------------------------------MKS-FGIPPK-----LRSYGPALFGFCKLGNTDKAYEVDAHMGESG  255 (593)
Q Consensus       216 ----------------------------------m~~-~g~~p~-----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g  255 (593)
                                                        +.. -+-.|.     .+..-..+-++...|+.+++.+.|+.|...|
T Consensus       243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~  322 (822)
T PRK14574        243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG  322 (822)
T ss_pred             HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence                                              111 111132     2233456788889999999999999999888


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC-----CCCHHHHHHHHHHHhcchhhhhccccch-hhhHHHhhhc
Q 007684          256 VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR-----QVSESTFKIIEDWFDSVDAAEIGVLNWD-VSKVREGIVR  329 (593)
Q Consensus       256 ~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~-----~~~~~t~~~l~~~~~~~~~~~~~~~~~d-~~~~~~~~~~  329 (593)
                      .+.-...-.++.++|...+..++|..+++.+....-     .++......|.-.+-..       +.++ +..+.+.+.+
T Consensus       323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~-------e~~~~A~~~l~~~~~  395 (822)
T PRK14574        323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES-------EQLDKAYQFAVNYSE  395 (822)
T ss_pred             CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc-------ccHHHHHHHHHHHHh
Confidence            764555788899999999999999999999966331     11222123333333222       2222 2344444443


Q ss_pred             CCCcc-----cccccccCCceEEEE-ecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 007684          330 GGGGW-----HGQGWLGSGKWRVER-TQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQ  399 (593)
Q Consensus       330 ~g~~~-----~g~~~~~~~~~~v~~-~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~  399 (593)
                      .- ++     .+.+-.+..+|.-.. ..+..+..-+...+|.+.++    ..|.+......+-..+...|...+|++.++
T Consensus       396 ~~-p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k  474 (822)
T PRK14574        396 QT-PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELK  474 (822)
T ss_pred             cC-CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            11 10     000001223332110 11111222334445555444    455555555555556666666666666665


Q ss_pred             HHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhhCC
Q 007684          400 EWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSP  442 (593)
Q Consensus       400 ~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~~~  442 (593)
                      ..+...+..-.+--|.-..+..++  .+.+.+.+++.+..+.+
T Consensus       475 ~a~~l~P~~~~~~~~~~~~al~l~--e~~~A~~~~~~l~~~~P  515 (822)
T PRK14574        475 AVESLAPRSLILERAQAETAMALQ--EWHQMELLTDDVISRSP  515 (822)
T ss_pred             HHhhhCCccHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhCC
Confidence            554442221111123333333333  45677777777766554

>TIGR00540 hemY_coli hemY protein

Probab=98.38  E-value=2.2e-05  Score=82.98  Aligned_cols=189  Identities=11%  Similarity=0.022  Sum_probs=129.4

Q ss_pred             hcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHc
Q 007684           74 SKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQH--HYNVLLYVCSC  151 (593)
Q Consensus        74 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--ty~~ll~~~~~  151 (593)
                      ...|+++.|+.......       ...+.|...+-....++.+.|+.+.|..++.+..+.  .|+..  .--.....+..
T Consensus        95 ~~~g~~~~A~~~l~~~~-------~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~  165 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNA-------DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLA  165 (409)
T ss_pred             HhCCCHHHHHHHHHHHh-------hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHH
Confidence            35788888888874333       223334444555566688889999999999998765  34432  22222334455


Q ss_pred             cCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHH-H
Q 007684          152 KCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG-P  230 (593)
Q Consensus       152 ~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~-~  230 (593)
                      .                |+.+.|.+.++.+.+.. +-+...+..+...+...|++++|.+++..+.+.++ ++...+. .
T Consensus       166 ~----------------~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~-~~~~~~~~l  227 (409)
T TIGR00540       166 Q----------------NELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL-FDDEEFADL  227 (409)
T ss_pred             C----------------CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence            4                58999999999999887 55677888999999999999999999999998876 3333332 1


Q ss_pred             ---HHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          231 ---ALFGFCKLGNTDKAYEVDAHMGESG---VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       231 ---li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                         ...++...+..+++.+.+..+....   .+.+...+..+...+...|+.++|.+++++..+.
T Consensus       228 ~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~  292 (409)
T TIGR00540       228 EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK  292 (409)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence               1122233333333344554444322   1136777888999999999999999999998773

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.36  E-value=4.7e-05  Score=80.13  Aligned_cols=233  Identities=9%  Similarity=-0.001  Sum_probs=161.2

Q ss_pred             CCChhhHHhhcCCccccch---HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHH
Q 007684           48 FTKPITDIKQNRFSADLTT---GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEAL  124 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  124 (593)
                      +...+..+.  ...|+...   -.....+...|+++.|...++...       +..+.+..++..+...|.+.|++++|.
T Consensus       137 A~~~l~~A~--~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~-------~~~P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        137 ANQHLERAA--ELADNDQLPVEITRVRIQLARNENHAARHGVDKLL-------EVAPRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHHHHHHHH--hcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            334444443  24455543   233667888999999999886655       555667778999999999999999999


Q ss_pred             HHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684          125 RLYDDARSNGITLSQ-------HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVA  197 (593)
Q Consensus       125 ~l~~~m~~~g~~p~~-------~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li  197 (593)
                      +++..+.+.+..++.       .+|..++..-...                .+.+...++++.+-.. .+.+......+.
T Consensus       208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~----------------~~~~~l~~~w~~lp~~-~~~~~~~~~~~A  270 (398)
T PRK10747        208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD----------------QGSEGLKRWWKNQSRK-TRHQVALQVAMA  270 (398)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh----------------cCHHHHHHHHHhCCHH-HhCCHHHHHHHH
Confidence            999999988654222       1222223222221                1344455555554322 245777888899


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCH
Q 007684          198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKV  276 (593)
Q Consensus       198 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~  276 (593)
                      .++...|+.++|.+++++..+.  .|+.  --.++.+.+..++.+++.+..+.+.+..  |+... +.++-..+.+.|++
T Consensus       271 ~~l~~~g~~~~A~~~L~~~l~~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~  344 (398)
T PRK10747        271 EHLIECDDHDTAQQIILDGLKR--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEW  344 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhc--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCH
Confidence            9999999999999999888773  3443  1224555556789999999999888543  55544 77888899999999


Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhc
Q 007684          277 DKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG  314 (593)
Q Consensus       277 ~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~  314 (593)
                      ++|.+.|+.+.+  ..|+..++..+...+...+..+.+
T Consensus       345 ~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A  380 (398)
T PRK10747        345 QEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEA  380 (398)
T ss_pred             HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHH
Confidence            999999999977  568888888888888766654433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.35  E-value=2.7e-05  Score=82.48  Aligned_cols=205  Identities=13%  Similarity=0.056  Sum_probs=142.9

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHC---CC-CCCHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGV--LRHKLDMCSKRGDVFEALRLYDDARSN---GI-TLSQH  140 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~---g~-~p~~~  140 (593)
                      ..|...|...|+++.|+..+.+.+.. ..+..+...+...  .+.+-..|...+++++|..+|+++...   .. .-+..
T Consensus       203 ~~La~~y~~~g~~e~A~~l~k~Al~~-l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~  281 (508)
T KOG1840|consen  203 RNLAEMYAVQGRLEKAEPLCKQALRI-LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA  281 (508)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHH-HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            67889999999999999999888833 3333343333322  666777899999999999999998744   11 11232


Q ss_pred             ---HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh-----CCC-CCCHH-HHHHHHHHHHhcCChHHHH
Q 007684          141 ---HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT-----DKV-DPNEA-TFTSVARLAVAKEDPEMAF  210 (593)
Q Consensus       141 ---ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~-----~g~-~p~~~-ty~~li~~~~~~g~~~~A~  210 (593)
                         +++.|-.+|.+.                |++++|.+.++...+     .|. .|... -++.++..|+..+++++|.
T Consensus       282 va~~l~nLa~ly~~~----------------GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~  345 (508)
T KOG1840|consen  282 VAATLNNLAVLYYKQ----------------GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK  345 (508)
T ss_pred             HHHHHHHHHHHHhcc----------------CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH
Confidence               333333366665                577776666554322     222 23333 5778888999999999999


Q ss_pred             HHHHHHHh---CCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhC----C--CCCC-HHHHHHHHHHHHhcCCH
Q 007684          211 DLVKQMKS---FGIPPK----LRSYGPALFGFCKLGNTDKAYEVDAHMGES----G--VVPE-EPELSALLKLSVDAKKV  276 (593)
Q Consensus       211 ~l~~~m~~---~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g--~~p~-~~t~~~Ll~~~~~~g~~  276 (593)
                      .+++...+   .-..++    ..+|+.|-..|-..|++++|++++++....    +  ..+. -..++.|-..|.+.+..
T Consensus       346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~  425 (508)
T KOG1840|consen  346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY  425 (508)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence            99987643   112222    258999999999999999999999987632    1  2233 34478888889888899


Q ss_pred             HHHHHHHHHHHH
Q 007684          277 DKVYEILHRLRT  288 (593)
Q Consensus       277 ~~a~~~l~~m~~  288 (593)
                      ++|.++|.+...
T Consensus       426 ~~a~~l~~~~~~  437 (508)
T KOG1840|consen  426 EEAEQLFEEAKD  437 (508)
T ss_pred             chHHHHHHHHHH
Confidence            999988887644

>PRK12370 invasion protein regulator; Provisional

Probab=98.31  E-value=3.6e-05  Score=84.64  Aligned_cols=180  Identities=6%  Similarity=-0.037  Sum_probs=130.2

Q ss_pred             CcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCCC
Q 007684           78 TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGSE  156 (593)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~  156 (593)
                      +.++|...+++.+       ...+.+...+..+-..+...|++++|...|+++.+.  .|+ ...+..+-.++...    
T Consensus       319 ~~~~A~~~~~~Al-------~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~----  385 (553)
T PRK12370        319 AMIKAKEHAIKAT-------ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMA----  385 (553)
T ss_pred             HHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC----
Confidence            3566776665554       444556667888888899999999999999999887  455 44555554566665    


Q ss_pred             CCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHH
Q 007684          157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGF  235 (593)
Q Consensus       157 ~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~  235 (593)
                                  |+.++|.+.+++..+... .+...+..++..+...|++++|...+++..+.. .|+ ...+..+..+|
T Consensus       386 ------------G~~~eAi~~~~~Al~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l  451 (553)
T PRK12370        386 ------------GQLEEALQTINECLKLDP-TRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFL  451 (553)
T ss_pred             ------------CCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHH
Confidence                        699999999999988762 233344445556777899999999999987643 254 34567788888


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          236 CKLGNTDKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       236 ~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ...|+.++|.+.++++...  .|+... .+.|...|+..|  +++...++.+.+
T Consensus       452 ~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        452 SLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            9999999999999987543  344333 555666777777  588887777765

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.31  E-value=2.1e-05  Score=83.40  Aligned_cols=205  Identities=12%  Similarity=0.100  Sum_probs=149.8

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CC-CCC
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEG--VLRHKLDMCSKRGDVFEALRLYDDARSN-----GI-TLS  138 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~  138 (593)
                      +.+-..|...+++++|..+|...++.... -.|...|..  +++.|-.+|++.|++++|..++++..+.     |. .|.
T Consensus       245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~-~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~  323 (508)
T KOG1840|consen  245 NILALVYRSLGKYDEAVNLYEEALTIREE-VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE  323 (508)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence            66778999999999999999988844433 333344433  3899999999999999999999886533     21 233


Q ss_pred             HHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCChHHHH
Q 007684          139 QHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT---DKVDPN----EATFTSVARLAVAKEDPEMAF  210 (593)
Q Consensus       139 ~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~---~g~~p~----~~ty~~li~~~~~~g~~~~A~  210 (593)
                      +.+..+-+. .|...                +.+++|..+++...+   .-..++    ..+|+.|...|-..|++++|.
T Consensus       324 v~~~l~~~~~~~~~~----------------~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~  387 (508)
T KOG1840|consen  324 VAAQLSELAAILQSM----------------NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE  387 (508)
T ss_pred             HHHHHHHHHHHHHHh----------------cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence            333333333 55554                488899888886543   112232    358999999999999999999


Q ss_pred             HHHHHHHhC------CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHhcCCHH
Q 007684          211 DLVKQMKSF------GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE----SGV-VPE-EPELSALLKLSVDAKKVD  277 (593)
Q Consensus       211 ~l~~~m~~~------g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~-~~t~~~Ll~~~~~~g~~~  277 (593)
                      +++++..+.      +..+. -..++.|-..|-+.+...+|.++|.+-..    .|. .|+ ..+|..|..+|...|+++
T Consensus       388 ~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e  467 (508)
T KOG1840|consen  388 ELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE  467 (508)
T ss_pred             HHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence            999998531      11222 35678889999999999999999988652    232 234 355999999999999999


Q ss_pred             HHHHHHHHHHH
Q 007684          278 KVYEILHRLRT  288 (593)
Q Consensus       278 ~a~~~l~~m~~  288 (593)
                      +|.++.+....
T Consensus       468 ~a~~~~~~~~~  478 (508)
T KOG1840|consen  468 AAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHHH
Confidence            99999888753

>TIGR00540 hemY_coli hemY protein

Probab=98.30  E-value=9.2e-05  Score=78.31  Aligned_cols=226  Identities=11%  Similarity=0.036  Sum_probs=152.9

Q ss_pred             HHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-H
Q 007684           69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-Y  147 (593)
Q Consensus        69 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll-~  147 (593)
                      ....+...|+++.|...++...       ...+.+..++..+...+.+.|++++|.+++..+.+.+.. +...+..+- .
T Consensus       159 ~a~l~l~~~~~~~Al~~l~~l~-------~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~  230 (409)
T TIGR00540       159 RTRILLAQNELHAARHGVDKLL-------EMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQK  230 (409)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence            4666777888888888775555       334555567888888888888888888888888887643 333332221 1


Q ss_pred             HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684          148 VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV---DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK  224 (593)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~---~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  224 (593)
                      ++...             ...+..+++.+.+..+.....   +.+...+..+...+...|+.++|.+++++..+..  |+
T Consensus       231 a~~~~-------------l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd  295 (409)
T TIGR00540       231 AEIGL-------------LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GD  295 (409)
T ss_pred             HHHHH-------------HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CC
Confidence            11110             000122333445555554431   1378889999999999999999999999998743  55


Q ss_pred             ccc---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH
Q 007684          225 LRS---YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP---ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF  298 (593)
Q Consensus       225 ~~t---y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~  298 (593)
                      ...   ...........++.+++.+.++...+.  .|+..   ...++...+.+.|++++|.+.|++.......|+...+
T Consensus       296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~  373 (409)
T TIGR00540       296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL  373 (409)
T ss_pred             cccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence            432   122223334467888899998887753  34444   4668888999999999999999976666678999988


Q ss_pred             HHHHHHHhcchhhhhccccch
Q 007684          299 KIIEDWFDSVDAAEIGVLNWD  319 (593)
Q Consensus       299 ~~l~~~~~~~~~~~~~~~~~d  319 (593)
                      ..+...+...+..+.+...|.
T Consensus       374 ~~La~ll~~~g~~~~A~~~~~  394 (409)
T TIGR00540       374 AMAADAFDQAGDKAEAAAMRQ  394 (409)
T ss_pred             HHHHHHHHHcCCHHHHHHHHH
Confidence            888888877776665555555

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.27  E-value=2.5e-05  Score=75.56  Aligned_cols=226  Identities=13%  Similarity=0.109  Sum_probs=159.8

Q ss_pred             Cccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 007684           60 FSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL  137 (593)
Q Consensus        60 ~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  137 (593)
                      ++-+-.+  |+|+     +.+.++|...|.+++       ........+--+|-+.|-+.|.++.|+++...+.+.   |
T Consensus        35 lsr~Yv~GlNfLL-----s~Q~dKAvdlF~e~l-------~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---p   99 (389)
T COG2956          35 LSRDYVKGLNFLL-----SNQPDKAVDLFLEML-------QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---P   99 (389)
T ss_pred             ccHHHHhHHHHHh-----hcCcchHHHHHHHHH-------hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---C
Confidence            5555555  7666     578899999998887       333333444667888899999999999999998875   3


Q ss_pred             CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684          138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK  217 (593)
Q Consensus       138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~  217 (593)
                      |..----++..+.-+          ..|...|-+++|.++|..+...| ..-+.+.--|+..|-...+|++|.++-+++.
T Consensus       100 dlT~~qr~lAl~qL~----------~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~  168 (389)
T COG2956         100 DLTFEQRLLALQQLG----------RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLV  168 (389)
T ss_pred             CCchHHHHHHHHHHH----------HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            332222222222211          12344579999999999999866 5566778889999999999999999999998


Q ss_pred             hCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 007684          218 SFGIPPKL----RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV  293 (593)
Q Consensus       218 ~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~  293 (593)
                      +.+-.+..    .-|--+...+....+.++|.+++.+..+.+-+ .+..=-.+-+.....|++++|.+.++...+.....
T Consensus       169 k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y  247 (389)
T COG2956         169 KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEY  247 (389)
T ss_pred             HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence            85543322    12333333444467899999999988764421 22223345667889999999999999999877777


Q ss_pred             CHHHHHHHHHHHhcchhhh
Q 007684          294 SESTFKIIEDWFDSVDAAE  312 (593)
Q Consensus       294 ~~~t~~~l~~~~~~~~~~~  312 (593)
                      -+.+...+...|...+...
T Consensus       248 l~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         248 LSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             HHHHHHHHHHHHHHhCCHH
Confidence            7778888888887666443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.27  E-value=7.4e-05  Score=84.60  Aligned_cols=291  Identities=8%  Similarity=0.026  Sum_probs=176.0

Q ss_pred             HHhcCCCcccCCCCcccccchHHhhhhcCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---H
Q 007684           72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESP-EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL---Y  147 (593)
Q Consensus        72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll---~  147 (593)
                      ...+.|+++.|...+.+.+       ...+.. ..++ .++..+...|+.++|+.++++..    .|+...+..++   .
T Consensus        43 i~~r~Gd~~~Al~~L~qaL-------~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~  110 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEES-------KAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR  110 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHH-------hhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence            4778888888888886666       222222 2344 78888888899999999988877    33333333333   3


Q ss_pred             HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc
Q 007684          148 VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS  227 (593)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  227 (593)
                      .|...                |++++|+++|+++.+.. +-|...+..++..+...++.++|++.++++...  .|+...
T Consensus       111 ly~~~----------------gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~  171 (822)
T PRK14574        111 AYRNE----------------KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQN  171 (822)
T ss_pred             HHHHc----------------CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHH
Confidence            55554                58899999999988776 445677778888888899999999999888763  466666


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------------
Q 007684          228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKVDKVYEILHRLR-------------------  287 (593)
Q Consensus       228 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~-------------------  287 (593)
                      |-.++..+...++..+|++.++++.+..  |+ ...+..+..++.+.|-...|.++..+-.                   
T Consensus       172 ~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~  249 (822)
T PRK14574        172 YMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQ  249 (822)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHH
Confidence            6444334434556656888888888654  54 4446777777778777766665554311                   


Q ss_pred             -HccCCCC---HHHHHHHHHHHhcchhhhh-------------------------ccccchhhhHHHhhhcCCCcccccc
Q 007684          288 -TLVRQVS---ESTFKIIEDWFDSVDAAEI-------------------------GVLNWDVSKVREGIVRGGGGWHGQG  338 (593)
Q Consensus       288 -~~~~~~~---~~t~~~l~~~~~~~~~~~~-------------------------~~~~~d~~~~~~~~~~~g~~~~g~~  338 (593)
                       +....++   .+-|..+-..+.....+..                         ..+.-++....+.+...|.+++.+ 
T Consensus       250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y-  328 (822)
T PRK14574        250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY-  328 (822)
T ss_pred             HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH-
Confidence             0000011   1112222222222221111                         011111233344455555433322 


Q ss_pred             cccCCceEEEEecccCCCCcCcccccccccC--C--------CHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHh
Q 007684          339 WLGSGKWRVERTQIDENGVCCSCNERLVCID--I--------DPRETENFASSLSNLACQREVRSDFNKFQEWLGR  404 (593)
Q Consensus       339 ~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~--l--------~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~  404 (593)
                              +.....+.|-.-+.-.+|+..+.  +        .+.+......++-+|...++.++|..+.+++.+.
T Consensus       329 --------~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~  396 (822)
T PRK14574        329 --------ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ  396 (822)
T ss_pred             --------HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence                    22334444444444555555555  1        1234444578889999999999999999999874

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.17  E-value=0.00082  Score=67.71  Aligned_cols=226  Identities=10%  Similarity=0.020  Sum_probs=144.1

Q ss_pred             CCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHH
Q 007684          118 GDVFEALRLYDDARSNG-ITLSQ--HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFT  194 (593)
Q Consensus       118 g~~~~A~~l~~~m~~~g-~~p~~--~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~  194 (593)
                      +..+.++.-+.++.+.. ..|+.  ..|..+-.++...                |+.++|...|++..+.. +.+...|+
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~----------------g~~~~A~~~~~~Al~l~-P~~~~a~~  102 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL----------------GLRALARNDFSQALALR-PDMADAYN  102 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence            35666777777766542 23322  2333333345554                68999999999988876 55678999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684          195 SVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA  273 (593)
Q Consensus       195 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~  273 (593)
                      .+...+...|++++|.+.|++..+  +.|+ ..+|..+..++...|+.++|.+.|+...+.  .|+..........+...
T Consensus       103 ~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~  178 (296)
T PRK11189        103 YLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESK  178 (296)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            999999999999999999999987  4466 467788888899999999999999998764  35544322223334456


Q ss_pred             CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEeccc
Q 007684          274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQID  353 (593)
Q Consensus       274 g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~  353 (593)
                      ++.++|...+.+..... .++... ..+...+         .+.++.....+.+.+.                       
T Consensus       179 ~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~~~---------lg~~~~~~~~~~~~~~-----------------------  224 (296)
T PRK11189        179 LDPKQAKENLKQRYEKL-DKEQWG-WNIVEFY---------LGKISEETLMERLKAG-----------------------  224 (296)
T ss_pred             CCHHHHHHHHHHHHhhC-CccccH-HHHHHHH---------ccCCCHHHHHHHHHhc-----------------------
Confidence            78999999997654322 222111 1122111         0011111111111100                       


Q ss_pred             CCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcC
Q 007684          354 ENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFD  409 (593)
Q Consensus       354 ~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d  409 (593)
                                .-....+.|...+.|..+...+...|+.++|+..|++.++.. |||
T Consensus       225 ----------~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~  269 (296)
T PRK11189        225 ----------ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN  269 (296)
T ss_pred             ----------CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence                      001112344566788899999999999999999999988644 444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.17  E-value=0.0002  Score=69.51  Aligned_cols=229  Identities=13%  Similarity=0.094  Sum_probs=173.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      -+.+-.+|.+-|.+.+|.+.++.-.+.  .|-+.||-.|-+.|.+-.                ..+.|+.+|.+-...- 
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~rid----------------QP~~AL~~~~~gld~f-  286 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRID----------------QPERALLVIGEGLDSF-  286 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhc----------------cHHHHHHHHhhhhhcC-
Confidence            355667788899999999999988777  667778887888998874                8999999999877653 


Q ss_pred             CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684          187 DPNEAT-FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA  265 (593)
Q Consensus       187 ~p~~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  265 (593)
                       |-.+| ..-+.+.+-..++.++|.++++...+..- .++....++..+|...++++.|+..|+.+...|+. +...|+.
T Consensus       287 -P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~N  363 (478)
T KOG1129|consen  287 -PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCN  363 (478)
T ss_pred             -CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhh
Confidence             55555 45688889999999999999999987432 45677888889999999999999999999999985 5667888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCce
Q 007684          266 LLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKW  345 (593)
Q Consensus       266 Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~  345 (593)
                      +--+|.-.+++|-++.-|.+....-.+|+...    --||                                        
T Consensus       364 igLCC~yaqQ~D~~L~sf~RAlstat~~~~aa----DvWY----------------------------------------  399 (478)
T KOG1129|consen  364 IGLCCLYAQQIDLVLPSFQRALSTATQPGQAA----DVWY----------------------------------------  399 (478)
T ss_pred             HHHHHHhhcchhhhHHHHHHHHhhccCcchhh----hhhh----------------------------------------
Confidence            88888899999999999998877555554321    0122                                        


Q ss_pred             EEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          346 RVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       346 ~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                      ++....|+.    |...-|-++|+    -++.+.+.++.+-.--.+.|++++|..+++...+..
T Consensus       400 Nlg~vaV~i----GD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~  459 (478)
T KOG1129|consen  400 NLGFVAVTI----GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM  459 (478)
T ss_pred             ccceeEEec----cchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence            011111111    22333444455    345677888888888889999999999999876543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.11  E-value=5.1e-06  Score=53.89  Aligned_cols=33  Identities=33%  Similarity=0.652  Sum_probs=23.6

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 007684          227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE  259 (593)
Q Consensus       227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  259 (593)
                      +||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            577777777777777777777777777777665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=0.0012  Score=67.07  Aligned_cols=209  Identities=10%  Similarity=0.042  Sum_probs=141.6

Q ss_pred             hHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcC-CCCHHHHHH---------------------
Q 007684           53 TDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARR-ESPEGVLRH---------------------  109 (593)
Q Consensus        53 ~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------------  109 (593)
                      ......|++..... +....+.-...+++.|++.|+.+..+     ... ..+-.+|..                     
T Consensus       251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-----DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i  325 (559)
T KOG1155|consen  251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-----DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI  325 (559)
T ss_pred             HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-----CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh
Confidence            34556677766666 66666677788899999998766621     111 111222333                     


Q ss_pred             ----------HHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHH
Q 007684          110 ----------KLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF  178 (593)
Q Consensus       110 ----------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~  178 (593)
                                +-+-|+-.++.++|..+|+...+.  .|.. ..|+.+=+-|...+                +...|++-|
T Consensus       326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmK----------------Nt~AAi~sY  387 (559)
T KOG1155|consen  326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMK----------------NTHAAIESY  387 (559)
T ss_pred             ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhc----------------ccHHHHHHH
Confidence                      334455556777888888877766  3333 34444444777664                667788888


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684          179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV  257 (593)
Q Consensus       179 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~  257 (593)
                      +...+-. +.|--.|-.|-.+|.-.+...-|+-.|++..+  +.|+ .+.|.+|..+|.+.+++++|+.-|......|-.
T Consensus       388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt  464 (559)
T KOG1155|consen  388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT  464 (559)
T ss_pred             HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence            8777666 66777788888888888888888888887766  3454 678888888888888888888888877765533


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          258 PEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       258 p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                       +...|..|.+.|-+-++.++|..++.+-.+
T Consensus       465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             -chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             456678888888888888888777776554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.05  E-value=4.4e-05  Score=80.61  Aligned_cols=225  Identities=13%  Similarity=0.026  Sum_probs=145.5

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684          102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNG--ITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ  179 (593)
Q Consensus       102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~  179 (593)
                      ....+...+-.+|-.-+++++|.++|+.+++..  ..-+...|.+.|-..-+.                    -++..+.
T Consensus       351 nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--------------------v~Ls~La  410 (638)
T KOG1126|consen  351 NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--------------------VALSYLA  410 (638)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--------------------HHHHHHH
Confidence            334667777888888899999999999888662  122567777776544331                    2233332


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684          180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP  258 (593)
Q Consensus       180 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  258 (593)
                      +-.-.--+-...||.++-+.|+-.++.+.|++.|++..+  +.| ...+|+.+-.-+....++|+|+.-|+..+    ..
T Consensus       411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~  484 (638)
T KOG1126|consen  411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GV  484 (638)
T ss_pred             HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cC
Confidence            211111134557888888888888888889888888877  446 36788877788888888888888888765    34


Q ss_pred             CHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCccc
Q 007684          259 EEPELSA---LLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWH  335 (593)
Q Consensus       259 ~~~t~~~---Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~  335 (593)
                      |...|++   |.-.|.+.++.+.|+-.|++..+  +.|....   |+..+                              
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsv---i~~~~------------------------------  529 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSV---ILCHI------------------------------  529 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchh---HHhhh------------------------------
Confidence            5555655   45567788888888888888766  3443321   22111                              


Q ss_pred             ccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHH
Q 007684          336 GQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLG  403 (593)
Q Consensus       336 g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~  403 (593)
                                      ...+.+++.-++|++.++    ++|.+.-.--.....+...++.++|+..+++..+
T Consensus       530 ----------------g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~  585 (638)
T KOG1126|consen  530 ----------------GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE  585 (638)
T ss_pred             ----------------hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence                            011123344455555555    5666555555566666677777788888877554

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.00  E-value=9.6e-06  Score=52.32  Aligned_cols=32  Identities=31%  Similarity=0.625  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 007684          192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP  223 (593)
Q Consensus       192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  223 (593)
                      ||+++|++|++.|+++.|+++|++|++.|+.|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            44444444444444444444444444444443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.00  E-value=7.1e-05  Score=61.48  Aligned_cols=88  Identities=22%  Similarity=0.311  Sum_probs=73.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGI-TLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK  185 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g  185 (593)
                      --..|..|...+++.....+|+.+++.|+ .|++.+|+.+|.+-.+..        +|...-.+++-..+.+|++|...+
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~--------lD~~~ie~kl~~LLtvYqDiL~~~   99 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRE--------LDSEDIENKLTNLLTVYQDILSNK   99 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcc--------ccchhHHHHHHHHHHHHHHHHHhc
Confidence            34566777778999999999999999999 999999999999666643        222223457788999999999999


Q ss_pred             CCCCHHHHHHHHHHHHh
Q 007684          186 VDPNEATFTSVARLAVA  202 (593)
Q Consensus       186 ~~p~~~ty~~li~~~~~  202 (593)
                      ++|+..||+.++..+.+
T Consensus       100 lKP~~etYnivl~~Llk  116 (120)
T PF08579_consen  100 LKPNDETYNIVLGSLLK  116 (120)
T ss_pred             cCCcHHHHHHHHHHHHH
Confidence            99999999999998765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.00  E-value=1.1e-05  Score=52.33  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL  225 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  225 (593)
                      .|||++|++|++.|++++|.++|++|++.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37999999999999999999999999999999984

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.99  E-value=0.0014  Score=63.45  Aligned_cols=169  Identities=14%  Similarity=0.052  Sum_probs=120.5

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHH
Q 007684          101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE  176 (593)
Q Consensus       101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~  176 (593)
                      ......+-.+...+.+.|++++|...|+++.+.  .|+.    .++..+-.++...                |++++|.+
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~----------------~~~~~A~~   91 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKS----------------GDYAEAIA   91 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhc----------------CCHHHHHH
Confidence            344556777888899999999999999998876  3332    2334444455554                59999999


Q ss_pred             HHHHHHhCCCCCCH--HHHHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCcc-cH-----------------
Q 007684          177 IFQQMITDKVDPNE--ATFTSVARLAVAK--------EDPEMAFDLVKQMKSFGIPPKLR-SY-----------------  228 (593)
Q Consensus       177 l~~~M~~~g~~p~~--~ty~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-ty-----------------  228 (593)
                      .|+++.+..-....  .++..+..++...        |+.++|.+.++++.+..  |+.. .+                 
T Consensus        92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~  169 (235)
T TIGR03302        92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKE  169 (235)
T ss_pred             HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHH
Confidence            99999875422111  2444555555554        78899999999997642  4432 11                 


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          229 GPALFGFCKLGNTDKAYEVDAHMGESGV-VP-EEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       229 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      -.+...|.+.|+.++|...+++.....- .| ....+..+..++.+.|+.++|..+++.+...
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            1345667889999999999999885421 23 3466889999999999999999999988763

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.98  E-value=0.0002  Score=75.72  Aligned_cols=257  Identities=13%  Similarity=0.043  Sum_probs=178.4

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCC-CCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRE-SPEGVLRHKLDMCSKRG-DVFEALRLYDDARSNGITLSQHHYNV  144 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~ty~~  144 (593)
                      .-+-.+|...+.+++|+.+|+     ..++++... ...+.|.+.+=-+-+.= ---.|..+.+.+     +-.+.+|.+
T Consensus       357 ~q~GrayFEl~~Y~~a~~~F~-----~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-----~~sPesWca  426 (638)
T KOG1126|consen  357 SQLGRAYFELIEYDQAERIFS-----LVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-----PNSPESWCA  426 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----HHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-----CCCcHHHHH
Confidence            777789999999999999994     333333333 33445777665443311 111223333322     335689998


Q ss_pred             HHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684          145 LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK  224 (593)
Q Consensus       145 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  224 (593)
                      +=++|+-+                ++.+.|++.|++..+.. +-...+|+.+-.-+.....+|.|...|+....    .|
T Consensus       427 ~GNcfSLQ----------------kdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~  485 (638)
T KOG1126|consen  427 LGNCFSLQ----------------KDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VD  485 (638)
T ss_pred             hcchhhhh----------------hHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CC
Confidence            88888886                49999999999988765 34778999999999999999999999986654    67


Q ss_pred             cccHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 007684          225 LRSYGPA---LFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI  300 (593)
Q Consensus       225 ~~ty~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~  300 (593)
                      .+.||++   ...|.|.++.+.|+-.|+...+.+  | +.+....+...+-+.|+.|+|+.++++.......-...-|..
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            7788764   456789999999999999987544  4 445577778888899999999999999876333222223322


Q ss_pred             HHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHH
Q 007684          301 IEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETE  376 (593)
Q Consensus       301 l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~  376 (593)
                      ..-.|+..                                                   +-.+|++.++    +.|.|..
T Consensus       564 ~~il~~~~---------------------------------------------------~~~eal~~LEeLk~~vP~es~  592 (638)
T KOG1126|consen  564 ASILFSLG---------------------------------------------------RYVEALQELEELKELVPQESS  592 (638)
T ss_pred             HHHHHhhc---------------------------------------------------chHHHHHHHHHHHHhCcchHH
Confidence            22222111                                                   1112222222    5677888


Q ss_pred             HHHHHHHHHhhhhhhHHhHHHHHHHHHhcCC
Q 007684          377 NFASSLSNLACQREVRSDFNKFQEWLGRHGP  407 (593)
Q Consensus       377 ~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~  407 (593)
                      .|..+...|.+.|+.+.|+..|--+.+-.++
T Consensus       593 v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  593 VFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            8888999999999999999999887775443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.98  E-value=1.2e-05  Score=51.83  Aligned_cols=34  Identities=32%  Similarity=0.509  Sum_probs=31.7

Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684          225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP  258 (593)
Q Consensus       225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  258 (593)
                      +.+|+.+|.+|++.|+++.|+++|++|++.|++|
T Consensus         1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            0489999999999999999999999999999988

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.88  E-value=0.0017  Score=65.49  Aligned_cols=191  Identities=12%  Similarity=0.011  Sum_probs=131.1

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~l  145 (593)
                      ..+-..|...|+.++|...|.+.+       ...+.....|+.+-..+...|++++|...|+...+.  .|+ ..+|..+
T Consensus        68 ~~~g~~~~~~g~~~~A~~~~~~Al-------~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~l  138 (296)
T PRK11189         68 YERGVLYDSLGLRALARNDFSQAL-------ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNR  138 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH-------HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            444456888999999999886666       444556778999999999999999999999999876  454 4455544


Q ss_pred             HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684          146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL  225 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  225 (593)
                      -.++...                |+.++|.+.|+...+..  |+..........+...++.++|.+.+++.... ..|+.
T Consensus       139 g~~l~~~----------------g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~  199 (296)
T PRK11189        139 GIALYYG----------------GRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQ  199 (296)
T ss_pred             HHHHHHC----------------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccc
Confidence            4455554                59999999999988764  43332222233345678899999999776532 22332


Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHhC---CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          226 RSYGPALFGFCKLGNTDKAYEVDAHMGES---GV--VPE-EPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                        |. ....+...|+.+++ +.++.+.+.   ..  .|+ ...|..+...+.+.|+.++|...|++..+.
T Consensus       200 --~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~  265 (296)
T PRK11189        200 --WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN  265 (296)
T ss_pred             --cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence              22 22333446666554 355555421   11  122 246888999999999999999999999874

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.84  E-value=0.004  Score=58.07  Aligned_cols=178  Identities=14%  Similarity=-0.023  Sum_probs=139.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK  185 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g  185 (593)
                      .--|--.|...|+...|..-+++..+.  .|+. .+|.++-..|...                |..+.|.+.|++.....
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~----------------Ge~~~A~e~YrkAlsl~   99 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKL----------------GENDLADESYRKALSLA   99 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHc----------------CChhhHHHHHHHHHhcC
Confidence            556677899999999999999999987  4444 4555555577665                69999999999988765


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684          186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS  264 (593)
Q Consensus       186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  264 (593)
                       +-+-...|+.---+|..|++++|...|++....-.-|. ..||.++.-+..+.|+.+.|.+.|++-.+..-. ...+..
T Consensus       100 -p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l  177 (250)
T COG3063         100 -PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALL  177 (250)
T ss_pred             -CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHH
Confidence             44566788888889999999999999999886433233 478999999999999999999999998865422 234567


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684          265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF  305 (593)
Q Consensus       265 ~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~  305 (593)
                      .+.+...+.|++-.|..++++....+- ++.+..-.-+..-
T Consensus       178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iria  217 (250)
T COG3063         178 ELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIA  217 (250)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHH
Confidence            788888899999999999998877555 6666555444443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.82  E-value=0.0023  Score=64.05  Aligned_cols=194  Identities=9%  Similarity=-0.013  Sum_probs=142.3

Q ss_pred             CCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCC
Q 007684           76 KSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS  155 (593)
Q Consensus        76 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~  155 (593)
                      .|++..|+......       .+-...|...|-.-..+.-+.||.+.|-.+..+..+.--.++...+-+.-......   
T Consensus        97 eG~~~qAEkl~~rn-------ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~---  166 (400)
T COG3071          97 EGDFQQAEKLLRRN-------AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR---  166 (400)
T ss_pred             cCcHHHHHHHHHHh-------hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC---
Confidence            57777777766332       24455566667777788888999999999999988774344555555555555555   


Q ss_pred             CCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-------ccH
Q 007684          156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-------RSY  228 (593)
Q Consensus       156 ~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~ty  228 (593)
                                   |+...|.+-.+++.+.+ +-+........++|.+.|++.....++.+|.+.|+--+.       .+|
T Consensus       167 -------------~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~  232 (400)
T COG3071         167 -------------RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW  232 (400)
T ss_pred             -------------CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence                         48889998888888877 567778899999999999999999999999998874443       356


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC
Q 007684          229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS  294 (593)
Q Consensus       229 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~  294 (593)
                      ..++.-....+..+.-...+++... ..+-+...-.+++.-+.+.|+.++|.++..+..+.+..|.
T Consensus       233 ~glL~q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~  297 (400)
T COG3071         233 EGLLQQARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR  297 (400)
T ss_pred             HHHHHHHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence            6666666555555554455555432 2344556667788888899999999999988887666655

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.81  E-value=0.007  Score=65.10  Aligned_cols=111  Identities=14%  Similarity=0.080  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684          192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS  270 (593)
Q Consensus       192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~  270 (593)
                      ++..+...|-..|+.++|++++++..+.  .|+ ...|..-...|-..|++++|.+.+++...... -|-..=+-....+
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~  272 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYL  272 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHH
Confidence            5566677788999999999999988874  477 46788888888899999999999999886554 2555556677788


Q ss_pred             HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684          271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF  305 (593)
Q Consensus       271 ~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~  305 (593)
                      .++|+.++|.+++......+..|......+=..||
T Consensus       273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf  307 (517)
T PF12569_consen  273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF  307 (517)
T ss_pred             HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence            89999999999988887665555555554444555

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.80  E-value=0.0002  Score=69.41  Aligned_cols=194  Identities=8%  Similarity=0.014  Sum_probs=147.7

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      +-+-++|.+.|.+.+|+..+.+.+        ...+..++|-.|-.+|.+..+...|+.+|.+-.+.  -|-.+||-.=+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL--------~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~  296 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSL--------TQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQ  296 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHh--------hcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhh
Confidence            678889999999999999886655        22455678999999999999999999999987766  67777765443


Q ss_pred             H-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684          147 Y-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL  225 (593)
Q Consensus       147 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  225 (593)
                      . .+...                +..++|.++|+...+.. +-+..+..++...|.-.+++|.|++.++++.+.|+ -+.
T Consensus       297 ARi~eam----------------~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~sp  358 (478)
T KOG1129|consen  297 ARIHEAM----------------EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSP  358 (478)
T ss_pred             HHHHHHH----------------HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CCh
Confidence            3 34333                46788888888877654 55666777788888888888888888888888887 667


Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE--LSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ..|+.+--+|...+.+|.+..-|+.....--.|+...  |-.|-...+..|+...|.+.|+-...
T Consensus       359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~  423 (478)
T KOG1129|consen  359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT  423 (478)
T ss_pred             HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence            7888888888888888888888887775544455433  66666666777888888877776655

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.80  E-value=0.0057  Score=61.37  Aligned_cols=247  Identities=15%  Similarity=0.078  Sum_probs=157.2

Q ss_pred             CCcccHHHHHHHHHHh-CCChh---hHHhhcCCc-cccch---HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC
Q 007684           32 SNCHTYRSLLCWHMHS-FTKPI---TDIKQNRFS-ADLTT---GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP  103 (593)
Q Consensus        32 pd~~~~~~ll~~~~~~-~~~~~---~~m~~~g~~-~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  103 (593)
                      -+.+..+-++.+..+. +.+..   ..|.+.--. +|...   -.........|+.+.|..-..+.+       +-.+.+
T Consensus       114 ~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll-------~~~pr~  186 (400)
T COG3071         114 GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLL-------EMTPRH  186 (400)
T ss_pred             CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHH-------HhCcCC
Confidence            4555666677766655 22111   223222222 23333   444456778888899888887776       555678


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHH
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-------QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE  176 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~  176 (593)
                      ..+.+....+|.+.|++.+...+...|.+.|+--+       ..+|+.+|.-+...+                ..+.-..
T Consensus       187 ~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~----------------~~~gL~~  250 (400)
T COG3071         187 PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN----------------GSEGLKT  250 (400)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc----------------cchHHHH
Confidence            88899999999999999999999999999986544       357777777555542                2222222


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-hCC
Q 007684          177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG-ESG  255 (593)
Q Consensus       177 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-~~g  255 (593)
                      .++..- ...+-+...-.+++.-+.++|+.++|.++.++-.+.+..|++    ..+-.+.+-++...-.+..++.. ..+
T Consensus       251 ~W~~~p-r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~  325 (400)
T COG3071         251 WWKNQP-RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHP  325 (400)
T ss_pred             HHHhcc-HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence            333221 122334455556777777888888888888877776665652    22334445566666665555544 345


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchh
Q 007684          256 VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA  310 (593)
Q Consensus       256 ~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~  310 (593)
                      ..|  -.+.+|-..|.+.+.+.+|.+.|+...  ..+|+.++|..+-..|...+.
T Consensus       326 ~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~  376 (400)
T COG3071         326 EDP--LLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGE  376 (400)
T ss_pred             CCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCC
Confidence            445  446777777778888888888777443  366777777777777755543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=0.0035  Score=63.87  Aligned_cols=211  Identities=10%  Similarity=0.040  Sum_probs=119.1

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHCC-CC-CCHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMC-SKRGDVFEALRLYDDARSNG-IT-LSQHHYN  143 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g-~~-p~~~ty~  143 (593)
                      -++..++-...+.+++..-.....       ..+.+....+-+.+.++ -...|+++|+++|++++++. .. -|..+|+
T Consensus       231 ~F~~~a~~el~q~~e~~~k~e~l~-------~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlyS  303 (559)
T KOG1155|consen  231 FFLKKAYQELHQHEEALQKKERLS-------SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYS  303 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHh
Confidence            445555554444444443332222       22223333344444444 44589999999999999883 11 1567777


Q ss_pred             HHHHHHHccCC----------CCCCC-----CCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 007684          144 VLLYVCSCKCG----------SESSE-----NGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM  208 (593)
Q Consensus       144 ~ll~~~~~~~~----------~~~~~-----~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~  208 (593)
                      -+|..-.....          ++..+     -+.+-|+-.+..++|...|+...+.+ +-....++.+-.-|....+...
T Consensus       304 N~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A  382 (559)
T KOG1155|consen  304 NVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA  382 (559)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence            76653333110          00000     00111222356666777777666655 4455566666666777777777


Q ss_pred             HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684          209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       209 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~  287 (593)
                      |.+-++...+..- -|-+.|=-+..+|.-.+...=|.-.|++...  ++| |...|.+|.++|.+.++.++|...|.+..
T Consensus       383 Ai~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai  459 (559)
T KOG1155|consen  383 AIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI  459 (559)
T ss_pred             HHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            7777776665321 3345666666777766666666666666553  333 44557777777777777777777776665


Q ss_pred             H
Q 007684          288 T  288 (593)
Q Consensus       288 ~  288 (593)
                      .
T Consensus       460 ~  460 (559)
T KOG1155|consen  460 L  460 (559)
T ss_pred             h
Confidence            5

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.76  E-value=0.0009  Score=73.76  Aligned_cols=210  Identities=11%  Similarity=0.054  Sum_probs=147.0

Q ss_pred             HHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 007684           69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQHHYNVLLY  147 (593)
Q Consensus        69 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~ll~  147 (593)
                      +...+-..++.+.|.+.|.+++       ...+.-...|-.+..+.-..+...+|..++.+..+. .-.|+..++  +=.
T Consensus       502 larl~E~l~~~~~A~e~Yk~Il-------kehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~  572 (1018)
T KOG2002|consen  502 LARLLEELHDTEVAEEMYKSIL-------KEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGN  572 (1018)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHH-------HHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHH
Confidence            3344445567888888887777       333333344666665555567777777777776644 233444332  111


Q ss_pred             HHHccCCCCCCCC--------------------------------CCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007684          148 VCSCKCGSESSEN--------------------------------GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS  195 (593)
Q Consensus       148 ~~~~~~~~~~~~~--------------------------------~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~  195 (593)
                      .+.....+..+..                                ..+.-...+..++|+++|.+..... +-|..+-|.
T Consensus       573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANG  651 (1018)
T KOG2002|consen  573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANG  651 (1018)
T ss_pred             HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccc
Confidence            3332222221110                                0111122467889999999998876 678889999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 007684          196 VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSALLKLSVDAK  274 (593)
Q Consensus       196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~~~g  274 (593)
                      +.-.++..|++++|..+|.+..+... -...+|-.+..+|..+|++-.|+++|+.... ..-.-+....+.|.+++-+.|
T Consensus       652 IgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~  730 (1018)
T KOG2002|consen  652 IGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG  730 (1018)
T ss_pred             hhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999998654 3456788899999999999999999998664 444456677999999999999


Q ss_pred             CHHHHHHHHHHHHHc
Q 007684          275 KVDKVYEILHRLRTL  289 (593)
Q Consensus       275 ~~~~a~~~l~~m~~~  289 (593)
                      .+.+|.+.+...+..
T Consensus       731 ~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  731 KLQEAKEALLKARHL  745 (1018)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            999999988877663

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.76  E-value=0.00037  Score=57.32  Aligned_cols=81  Identities=17%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCC--------hhHHHHHHHHHHhCCCCCCHHH
Q 007684          192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGI-PPKLRSYGPALFGFCKLGN--------TDKAYEVDAHMGESGVVPEEPE  262 (593)
Q Consensus       192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~--------~~~A~~l~~~m~~~g~~p~~~t  262 (593)
                      |-..-|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..-        +-.++.+|++|...+++|+..|
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            445667777777999999999999999999 8999999999999987642        3356788999998889999999


Q ss_pred             HHHHHHHHHh
Q 007684          263 LSALLKLSVD  272 (593)
Q Consensus       263 ~~~Ll~~~~~  272 (593)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9998888765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.74  E-value=3.7e-05  Score=48.30  Aligned_cols=29  Identities=38%  Similarity=0.752  Sum_probs=16.0

Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684          227 SYGPALFGFCKLGNTDKAYEVDAHMGESG  255 (593)
Q Consensus       227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g  255 (593)
                      |||.+|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555544

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.0036  Score=64.17  Aligned_cols=218  Identities=12%  Similarity=0.116  Sum_probs=156.1

Q ss_pred             HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH
Q 007684          114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF  193 (593)
Q Consensus       114 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty  193 (593)
                      +.-.|+..+|..-|+...+....++.- |--+-.+|...+                +-++....|++....+ +-|..+|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~----------------~~~~~~~~F~~A~~ld-p~n~dvY  397 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADEN----------------QSEKMWKDFNKAEDLD-PENPDVY  397 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhh----------------ccHHHHHHHHHHHhcC-CCCCchh
Confidence            444689999999999999886554432 444445666653                7789999999988776 5566778


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684          194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD  272 (593)
Q Consensus       194 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~  272 (593)
                      .--...+.-.+++++|..=|++.+.  +.|. ...|--+-.+.-|.+.+++++..|++.++ .++--...|+-....+..
T Consensus       398 yHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtD  474 (606)
T KOG0547|consen  398 YHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTD  474 (606)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhh
Confidence            8777788888999999999999887  4455 45666666777789999999999999876 344445568889999999


Q ss_pred             cCCHHHHHHHHHHHHHcc-----CCCCHHHH--HHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCce
Q 007684          273 AKKVDKVYEILHRLRTLV-----RQVSESTF--KIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKW  345 (593)
Q Consensus       273 ~g~~~~a~~~l~~m~~~~-----~~~~~~t~--~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~  345 (593)
                      .+++++|.+.|+...+..     +.++..++  ..++-            -.|.                          
T Consensus       475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~------------~qwk--------------------------  516 (606)
T KOG0547|consen  475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV------------LQWK--------------------------  516 (606)
T ss_pred             HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh------------hchh--------------------------
Confidence            999999999999887621     11222111  11110            0011                          


Q ss_pred             EEEEecccCCCCcCcccccc----cccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHH
Q 007684          346 RVERTQIDENGVCCSCNERL----VCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLG  403 (593)
Q Consensus       346 ~v~~~~i~~~g~c~~~~~al----~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~  403 (593)
                                   +....++    +.+.++|.-...+..|-.-...+|++++|+++|++-..
T Consensus       517 -------------~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  517 -------------EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             -------------hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                         1111222    23447787788899999999999999999999998653

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.64  E-value=5e-05  Score=47.69  Aligned_cols=31  Identities=23%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGI  221 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~  221 (593)
                      +|||++|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4899999999999999999999999999875

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.61  E-value=0.00092  Score=66.73  Aligned_cols=150  Identities=17%  Similarity=0.126  Sum_probs=104.6

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHH
Q 007684          112 DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEA  191 (593)
Q Consensus       112 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~  191 (593)
                      ..+...|++++|++++..-      -+.......+.+|...                ++++.|.+.++.|.+..   +..
T Consensus       110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~----------------~R~dlA~k~l~~~~~~~---eD~  164 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKM----------------NRPDLAEKELKNMQQID---EDS  164 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHT----------------T-HHHHHHHHHHHHCCS---CCH
T ss_pred             HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHc----------------CCHHHHHHHHHHHHhcC---CcH
Confidence            4466679999998888642      2445555556666665                48999999999998753   345


Q ss_pred             HHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684          192 TFTSVARLAVA----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL  267 (593)
Q Consensus       192 ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll  267 (593)
                      +.+.|+.++..    .+.+.+|+-+|+++.+. ..++..+.|.+..++...|++++|++++.+..+.+ .-+..++..++
T Consensus       165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNli  242 (290)
T PF04733_consen  165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLI  242 (290)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence            55666666554    34688999999998764 44677788888888889999999999988876543 23456677788


Q ss_pred             HHHHhcCCH-HHHHHHHHHHHH
Q 007684          268 KLSVDAKKV-DKVYEILHRLRT  288 (593)
Q Consensus       268 ~~~~~~g~~-~~a~~~l~~m~~  288 (593)
                      .++...|+. +.+.+++.+++.
T Consensus       243 v~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  243 VCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHhCCChhHHHHHHHHHHH
Confidence            888888876 667788888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.61  E-value=0.0047  Score=68.36  Aligned_cols=325  Identities=12%  Similarity=0.039  Sum_probs=177.6

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGV--LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNV  144 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~  144 (593)
                      -.+-.+|-..|++++|...|.+..      +.  .++..+  +--|..+|.+.|+++.|...|+.....  .||..--..
T Consensus       311 Y~~gRs~Ha~Gd~ekA~~yY~~s~------k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~  380 (1018)
T KOG2002|consen  311 YQLGRSYHAQGDFEKAFKYYMESL------KA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMK  380 (1018)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHH------cc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHH
Confidence            456667778888888877773333      11  111112  455677777888888888877777665  444433333


Q ss_pred             HHH-HHHccCC-C---CCC--------CCCC---Ccc------cccccHHHHHHHHHH----HHhCCCCCCHHHHHHHHH
Q 007684          145 LLY-VCSCKCG-S---ESS--------ENGD---REN------DSNLGLKRGFEIFQQ----MITDKVDPNEATFTSVAR  198 (593)
Q Consensus       145 ll~-~~~~~~~-~---~~~--------~~~~---~~~------~~~g~~~~a~~l~~~----M~~~g~~p~~~ty~~li~  198 (593)
                      +|. +|+..+. -   +.+        +...   +++      .-.++...++..|..    |...+..+-....|++..
T Consensus       381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas  460 (1018)
T KOG2002|consen  381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVAS  460 (1018)
T ss_pred             HHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence            333 4544310 0   000        0000   000      012344444555543    344555677788999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhC---CCCCCcc-------cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 007684          199 LAVAKEDPEMAFDLVKQMKSF---GIPPKLR-------SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSALL  267 (593)
Q Consensus       199 ~~~~~g~~~~A~~l~~~m~~~---g~~p~~~-------ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll  267 (593)
                      .+...|++++|...|++.+..   ...++..       -|| +-..+-..++.+.|.++|..+....  |.-+. |-.|.
T Consensus       461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~  537 (1018)
T KOG2002|consen  461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLG  537 (1018)
T ss_pred             HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhh
Confidence            999999999999999988654   1223331       455 5555566778899999999987532  44333 55554


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchh--hhHHHhhhcCCCcccccccccCCce
Q 007684          268 KLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDV--SKVREGIVRGGGGWHGQGWLGSGKW  345 (593)
Q Consensus       268 ~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~g~~~~g~~~~~~~~~  345 (593)
                      ......+...+|...+.+... ...-++...+.+=.|+-..       ..|..  ........+.-...+.++.+..|..
T Consensus       538 ~ma~~k~~~~ea~~~lk~~l~-~d~~np~arsl~G~~~l~k-------~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~  609 (1018)
T KOG2002|consen  538 CMARDKNNLYEASLLLKDALN-IDSSNPNARSLLGNLHLKK-------SEWKPAKKKFETILKKTSTKTDAYSLIALGNV  609 (1018)
T ss_pred             HHHHhccCcHHHHHHHHHHHh-cccCCcHHHHHHHHHHHhh-------hhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence            333445677788888877765 2223333444444455322       22322  1111111111111222222222210


Q ss_pred             EEEEecccCCC--------CcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC-CcCeee
Q 007684          346 RVERTQIDENG--------VCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG-PFDAVI  412 (593)
Q Consensus       346 ~v~~~~i~~~g--------~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~-~~d~vi  412 (593)
                           .+...+        .-+.-.+|++.+.    ..|.+...-+.+-..++..|++.+|..+|.+..+... -+|+.|
T Consensus       610 -----~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~l  684 (1018)
T KOG2002|consen  610 -----YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWL  684 (1018)
T ss_pred             -----HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceee
Confidence                 010000        1122345555544    5566665555566678889999999999999988876 566666


Q ss_pred             eccce
Q 007684          413 DGANV  417 (593)
Q Consensus       413 dg~nv  417 (593)
                      --+++
T Consensus       685 Nlah~  689 (1018)
T KOG2002|consen  685 NLAHC  689 (1018)
T ss_pred             eHHHH
Confidence            54444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.57  E-value=0.0068  Score=62.68  Aligned_cols=199  Identities=9%  Similarity=-0.047  Sum_probs=126.5

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~l  145 (593)
                      ..+...+...|+.+++...+....    +.......+..........+...|++++|.+++++..+.  .|+ ...++. 
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-   82 (355)
T cd05804          10 AAAALLLLLGGERPAAAAKAAAAA----QALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-   82 (355)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHH----HHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence            344445555666666644443222    111111222233334455567789999999999998876  343 333332 


Q ss_pred             HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684          146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN-EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK  224 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  224 (593)
                      ...+...+            ...|....+.+.++.  .....|+ ......+...+...|++++|.+.+++..+..  |+
T Consensus        83 ~~~~~~~~------------~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~  146 (355)
T cd05804          83 HLGAFGLG------------DFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PD  146 (355)
T ss_pred             hHHHHHhc------------ccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC
Confidence            11111110            001355556666654  2222344 3455567778899999999999999998843  54


Q ss_pred             -cccHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          225 -LRSYGPALFGFCKLGNTDKAYEVDAHMGESGV-VPEE--PELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       225 -~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                       ...+..+...|...|++++|...+++.....- .|+.  ..|..+...+...|+.++|..++++...
T Consensus       147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence             56677888899999999999999999875322 2333  3456788889999999999999999854

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.51  E-value=0.0022  Score=64.05  Aligned_cols=185  Identities=9%  Similarity=0.032  Sum_probs=115.9

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKR-GDVFEALRLYDDARSNGITLSQHHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~ty~~l  145 (593)
                      -++.++|...|+.+.+..-.          .....++......+ ..|.+. ++-+.++.-+++....+...+..++..+
T Consensus        39 ~~~~Rs~iAlg~~~~vl~ei----------~~~~~~~l~av~~l-a~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~  107 (290)
T PF04733_consen   39 FYQYRSYIALGQYDSVLSEI----------KKSSSPELQAVRLL-AEYLSSPSDKESALEELKELLADQAGESNEIVQLL  107 (290)
T ss_dssp             HHHHHHHHHTT-HHHHHHHS-----------TTSSCCCHHHHHH-HHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHH
T ss_pred             HHHHHHHHHcCChhHHHHHh----------ccCCChhHHHHHHH-HHHHhCccchHHHHHHHHHHHHhccccccHHHHHH
Confidence            67888888888876544322          12223333334444 444444 5555555555444333333233333333


Q ss_pred             HH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684          146 LY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK  224 (593)
Q Consensus       146 l~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  224 (593)
                      .. .+..                .|++++|++++..-      .+.......+..|.+.+++|.|.+.++.|.+..  .|
T Consensus       108 ~A~i~~~----------------~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD  163 (290)
T PF04733_consen  108 AATILFH----------------EGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED  163 (290)
T ss_dssp             HHHHHCC----------------CCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC
T ss_pred             HHHHHHH----------------cCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc
Confidence            32 3333                36999999888642      456777788899999999999999999998742  34


Q ss_pred             cccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          225 LRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       225 ~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      . +-..+..++..    .+.+.+|+-+|+++.+ ...++..+++.+..+....|++++|.+++.+..+
T Consensus       164 ~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~  229 (290)
T PF04733_consen  164 S-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE  229 (290)
T ss_dssp             H-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred             H-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3 33335554443    3468999999999865 4567888899999999999999999998887644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.51  E-value=0.017  Score=53.93  Aligned_cols=193  Identities=12%  Similarity=0.058  Sum_probs=151.8

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHH-YNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-y~~l  145 (593)
                      --|--.|...|+...|...++..+       +..+....++..+-..|-+.|..+.|.+-|+...+.  .|+.-. .|--
T Consensus        39 lqLal~YL~~gd~~~A~~nlekAL-------~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNY  109 (250)
T COG3063          39 LQLALGYLQQGDYAQAKKNLEKAL-------EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNY  109 (250)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH-------HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhh
Confidence            345558999999999999887666       444556667999999999999999999999998877  444322 1111


Q ss_pred             H-HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 007684          146 L-YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP  223 (593)
Q Consensus       146 l-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  223 (593)
                      = -+|.+                 |++++|...|++....-. .--..||.++.-+..+.|+.+.|...|++-.+..  |
T Consensus       110 G~FLC~q-----------------g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p  170 (250)
T COG3063         110 GAFLCAQ-----------------GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--P  170 (250)
T ss_pred             hHHHHhC-----------------CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--c
Confidence            1 15665                 589999999999876422 2223578899888899999999999999998743  4


Q ss_pred             C-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          224 K-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       224 ~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      + ..+.-.+.....+.|+.-.|...++.....+. ++..++-..|+.-...|+.+.+.++=..+..
T Consensus       171 ~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         171 QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4 45677788888999999999999999887666 8888888889988899999988887777655

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.51  E-value=0.0016  Score=67.72  Aligned_cols=122  Identities=16%  Similarity=0.126  Sum_probs=78.8

Q ss_pred             CCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007684          135 ITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD--KVDPNEATFTSVARLAVAKEDPEMAFDL  212 (593)
Q Consensus       135 ~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~l  212 (593)
                      ..-+......+++.+....                +++++.+++...+..  ....-..|.+++|+.|.+.|..+.+..+
T Consensus        62 ~~vS~~dld~fvn~~~~~~----------------~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~  125 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKD----------------DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLEL  125 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHh----------------HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHH
Confidence            3445556666666665542                666777777666643  2222234455777777777777777777


Q ss_pred             HHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684          213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD  272 (593)
Q Consensus       213 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~  272 (593)
                      ++.=...|+-||..|||.+|+.+.+.|++..|.++..+|...+...+..|+.--+.+|.+
T Consensus       126 L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  126 LKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777666665565665554444433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.50  E-value=0.0084  Score=64.51  Aligned_cols=196  Identities=12%  Similarity=0.050  Sum_probs=107.2

Q ss_pred             HHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007684           69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV  148 (593)
Q Consensus        69 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~  148 (593)
                      ....+...|++++|+.......       .........+......+.+.|+.++|..+|..+.+.  .|+...|-..+..
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~-------~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~   80 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNE-------KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEE   80 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhh-------hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHH
Confidence            3456788899999998873332       222333445888889999999999999999999998  5677777777665


Q ss_pred             HHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCccc
Q 007684          149 CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP-EMAFDLVKQMKSFGIPPKLRS  227 (593)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t  227 (593)
                      |.....          -......+...++|+++...-  |...+.--+.-.+..-..+ ..+..++..+...|+ |+  +
T Consensus        81 ~~g~~~----------~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-Ps--l  145 (517)
T PF12569_consen   81 ALGLQL----------QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-PS--L  145 (517)
T ss_pred             HHhhhc----------ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-ch--H
Confidence            542110          000124556666666665543  2222222221111111111 233444455555665 42  4


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          228 YGPALFGFCKLGNTDKAYEVDAHMGES----G----------VVPEEP--ELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       228 y~~li~~~~~~g~~~~A~~l~~~m~~~----g----------~~p~~~--t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      |+.+-..|......+-..+++..+...    +          -.|...  ++.-|-..|-..|+.++|++++++..+
T Consensus       146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~  222 (517)
T PF12569_consen  146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE  222 (517)
T ss_pred             HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            555555555444444444444444321    1          112222  223344455566677777766666655

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.48  E-value=0.00068  Score=72.54  Aligned_cols=217  Identities=12%  Similarity=0.027  Sum_probs=155.8

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...+...|-...|..++..               ...+.-.|..|+..|+..+|..+..+..++  +|+...|..+.
T Consensus       402 ~~laell~slGitksAl~I~Er---------------lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG  464 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFER---------------LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG  464 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHh---------------HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence            6777788888888888888721               234677778888888888888887776664  66777776664


Q ss_pred             HHHHccCC----CCCCCCC--------CCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007684          147 YVCSCKCG----SESSENG--------DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK  214 (593)
Q Consensus       147 ~~~~~~~~----~~~~~~~--------~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~  214 (593)
                      ..-.+..-    ++.++.+        -.....+++++++.+.|+.-.+.+ +.-..+|-.+-.++.+.++++.|.+.|.
T Consensus       465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~  543 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH  543 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence            42222110    1111100        011233578999999998766554 5566788888888889999999999999


Q ss_pred             HHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC-C
Q 007684          215 QMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR-Q  292 (593)
Q Consensus       215 ~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~-~  292 (593)
                      ....  +.|+ ...||++-.+|.+.|+-.+|+..+.+..+.+ .-+...|..-+-...+.|.+++|.+.++++..... .
T Consensus       544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~  620 (777)
T KOG1128|consen  544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY  620 (777)
T ss_pred             HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence            9887  5577 5789999999999999999999999999877 45666788888888999999999999999876322 2


Q ss_pred             CCHHHHHHHHHH
Q 007684          293 VSESTFKIIEDW  304 (593)
Q Consensus       293 ~~~~t~~~l~~~  304 (593)
                      -+...-..++..
T Consensus       621 ~d~~vl~~iv~~  632 (777)
T KOG1128|consen  621 KDDEVLLIIVRT  632 (777)
T ss_pred             ccchhhHHHHHH
Confidence            244444444433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.39  E-value=0.0057  Score=61.91  Aligned_cols=135  Identities=10%  Similarity=0.126  Sum_probs=99.4

Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684          170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA  249 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~  249 (593)
                      +...|++++.+.... ++-|....+.|...|-+.|+-..|++.+-+--.. ++-+..|..-|..-|....-.++|...|+
T Consensus       573 d~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~e  650 (840)
T KOG2003|consen  573 DPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFE  650 (840)
T ss_pred             CHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            455566665444322 4567788888888999999988888877654332 33456777767777778888889999998


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcch
Q 007684          250 HMGESGVVPEEPELSALLKLSV-DAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD  309 (593)
Q Consensus       250 ~m~~~g~~p~~~t~~~Ll~~~~-~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~  309 (593)
                      +..  =+.|+..-|..||..|. +.|++.+|++++++..+ ...-+......|+..+...+
T Consensus       651 kaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlg  708 (840)
T KOG2003|consen  651 KAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLG  708 (840)
T ss_pred             HHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhcccc
Confidence            764  46799999999988765 68999999999999865 34456677788888776555

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.38  E-value=0.0082  Score=53.31  Aligned_cols=83  Identities=8%  Similarity=-0.046  Sum_probs=50.3

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|.+.|+...... +.+..++..+..++...|++++|...|++.....- .+...+..+..++.+.|+.++|.+.|
T Consensus        38 g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~  115 (144)
T PRK15359         38 GDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGEPGLAREAF  115 (144)
T ss_pred             CCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46666666666666554 44555666666666666666666666666665321 23455555666666666666666666


Q ss_pred             HHHHh
Q 007684          249 AHMGE  253 (593)
Q Consensus       249 ~~m~~  253 (593)
                      +...+
T Consensus       116 ~~Al~  120 (144)
T PRK15359        116 QTAIK  120 (144)
T ss_pred             HHHHH
Confidence            66553

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.38  E-value=0.0014  Score=60.82  Aligned_cols=103  Identities=14%  Similarity=0.140  Sum_probs=66.5

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684          124 LRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK  203 (593)
Q Consensus       124 ~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~  203 (593)
                      ...|+.....  ..|..+|..++..|.+..           --+.|..+-...-+..|.+-|+.-|..+|+.||+.+=+.
T Consensus        34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~-----------~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg  100 (228)
T PF06239_consen   34 EELFERAPGQ--AKDKATFLEAVDIFKQRD-----------VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG  100 (228)
T ss_pred             HHHHHHHhhc--cccHHHHHHHHHHHHhcC-----------CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC
Confidence            3445544222  447788888888887641           123478888999999999999999999999999987652


Q ss_pred             ----------------CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 007684          204 ----------------EDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG  239 (593)
Q Consensus       204 ----------------g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g  239 (593)
                                      .+-+-|.+++++|...|+.||..|+..++..|++.+
T Consensus       101 ~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  101 KFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             CcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence                            112344455555555555555555555555554444

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.37  E-value=0.011  Score=55.64  Aligned_cols=128  Identities=12%  Similarity=0.091  Sum_probs=102.0

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHH-HhcCC--hhHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGF-CKLGN--TDKA  244 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~-~~~g~--~~~A  244 (593)
                      ++.+++...++...+.. +.|...|..+...|...|++++|...+++..+.  .|+ ...+..+..++ ...|+  .++|
T Consensus        53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            47788888888877776 778899999999999999999999999999874  354 56777777764 67777  5999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684          245 YEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII  301 (593)
Q Consensus       245 ~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l  301 (593)
                      .+++++..+.+-. +...+..|...+.+.|++++|...++++.+. ..|+..-+.+|
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~~i  184 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQLV  184 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHHHH
Confidence            9999999875532 4566888888999999999999999999873 33455555555

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.34  E-value=0.0076  Score=52.61  Aligned_cols=118  Identities=7%  Similarity=-0.018  Sum_probs=89.7

Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 007684          177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV  256 (593)
Q Consensus       177 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~  256 (593)
                      .|+...... +.+......+...+...|+.++|.+.++.....+- .+...+..+...|.+.|+.++|...++.....+ 
T Consensus         5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-   81 (135)
T TIGR02552         5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-   81 (135)
T ss_pred             hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            445555433 22445677788888999999999999999987542 356788888999999999999999999887654 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 007684          257 VPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK  299 (593)
Q Consensus       257 ~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~  299 (593)
                      ..+...+..+...+...|+.++|...+++..+  ..|+...+.
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~  122 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYS  122 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence            33556677788899999999999999998877  345554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.34  E-value=0.0038  Score=64.98  Aligned_cols=132  Identities=10%  Similarity=0.040  Sum_probs=111.0

Q ss_pred             HHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684          177 IFQQMIT---DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF--GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       177 l~~~M~~---~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m  251 (593)
                      ++..|.+   .+.+.+......++..+....++|.+..++-+....  .......|..++|+.|.+.|..++|.+++..=
T Consensus        50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~  129 (429)
T PF10037_consen   50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR  129 (429)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence            5555543   445678889999999999999999999999998764  22222346679999999999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcc
Q 007684          252 GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV  308 (593)
Q Consensus       252 ~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~  308 (593)
                      ...|+-||..++|.||+.+.+.|++..|.++.-.|.......++.|+..-+..|.+.
T Consensus       130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998888888888887777766555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.29  E-value=0.0023  Score=59.34  Aligned_cols=88  Identities=23%  Similarity=0.336  Sum_probs=72.7

Q ss_pred             CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC----------------ChhHHH
Q 007684          187 DPNEATFTSVARLAVA-----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG----------------NTDKAY  245 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g----------------~~~~A~  245 (593)
                      ..|-.+|..+|..+.+     .|.++-....++.|.+.|+.-|+.+|+.||+.+=+..                +-+-|.
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i  123 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI  123 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence            5788999999999986     4778999999999999999999999999999987622                235577


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684          246 EVDAHMGESGVVPEEPELSALLKLSVDAK  274 (593)
Q Consensus       246 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g  274 (593)
                      +++++|+..|+-||..|+..|++.+.+.+
T Consensus       124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  124 DLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence            88888888888888888888888876655

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=0.0047  Score=60.81  Aligned_cols=254  Identities=14%  Similarity=0.111  Sum_probs=155.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC
Q 007684          110 KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN  189 (593)
Q Consensus       110 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~  189 (593)
                      |+.-|.+.+++.+|..+.+++.-.      ..|..++.+........+.+       ....++-|...|+..-+.+..-|
T Consensus       291 L~iYyL~q~dVqeA~~L~Kdl~Pt------tP~EyilKgvv~aalGQe~g-------SreHlKiAqqffqlVG~Sa~ecD  357 (557)
T KOG3785|consen  291 LIIYYLNQNDVQEAISLCKDLDPT------TPYEYILKGVVFAALGQETG-------SREHLKIAQQFFQLVGESALECD  357 (557)
T ss_pred             heeeecccccHHHHHHHHhhcCCC------ChHHHHHHHHHHHHhhhhcC-------cHHHHHHHHHHHHHhcccccccc
Confidence            455688899999999998765422      22334454333321111110       01256677888877766665544


Q ss_pred             HH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 007684          190 EA-TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA-LL  267 (593)
Q Consensus       190 ~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-Ll  267 (593)
                      +. ---++.+.+.-.-++|+++-.++.++..-..-|...|| +..+++..|+..+|+++|-.+....++ |..+|-+ |.
T Consensus       358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LA  435 (557)
T KOG3785|consen  358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLA  435 (557)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHH
Confidence            43 23455666667778999999999998876656677777 889999999999999999887654444 5566654 56


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCCCHH--HHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCce
Q 007684          268 KLSVDAKKVDKVYEILHRLRTLVRQVSES--TFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKW  345 (593)
Q Consensus       268 ~~~~~~g~~~~a~~~l~~m~~~~~~~~~~--t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~  345 (593)
                      ++|.+.+..+.|++++-++..    |++.  ....|.+-|...+.+..+      .+-+..+....-             
T Consensus       436 rCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyya------aKAFd~lE~lDP-------------  492 (557)
T KOG3785|consen  436 RCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYA------AKAFDELEILDP-------------  492 (557)
T ss_pred             HHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHH------HHhhhHHHccCC-------------
Confidence            788999999999988877754    3222  335566666544433333      233333332221             


Q ss_pred             EEEEecccCCCCcCcccccccccC---CCHHHHHHHHHHHHHHhhhhhh--HHhHHHHHHHHHhc
Q 007684          346 RVERTQIDENGVCCSCNERLVCID---IDPRETENFASSLSNLACQREV--RSDFNKFQEWLGRH  405 (593)
Q Consensus       346 ~v~~~~i~~~g~c~~~~~al~~~~---l~~~~~~~~~~~i~~l~~~~~~--~~a~~~f~~~l~~~  405 (593)
                          +.-...|+-|.|..-.+.+-   -.|.-..+...++.-+...+..  +-.+++.++|.+.+
T Consensus       493 ----~pEnWeGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa~~~  553 (557)
T KOG3785|consen  493 ----TPENWEGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWAETH  553 (557)
T ss_pred             ----CccccCCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHhc
Confidence                11122344455544333332   4444456677777666665543  44567777777654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.21  E-value=0.01  Score=52.71  Aligned_cols=116  Identities=10%  Similarity=-0.048  Sum_probs=90.5

Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       175 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      .++|++..+.  .|+  .+..+...+...|++++|...|+......- .+...|..+..++.+.|++++|...|+.....
T Consensus        13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3455555533  244  355678888999999999999999987432 35678888999999999999999999999864


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH
Q 007684          255 GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF  298 (593)
Q Consensus       255 g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~  298 (593)
                      + ..+...+..+..++...|+.++|...|++..+  ..|+...+
T Consensus        88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~  128 (144)
T PRK15359         88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASW  128 (144)
T ss_pred             C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHH
Confidence            3 23566788899999999999999999999876  44544433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.20  E-value=0.019  Score=54.64  Aligned_cols=159  Identities=8%  Similarity=-0.078  Sum_probs=104.9

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC
Q 007684          108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD  187 (593)
Q Consensus       108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~  187 (593)
                      ..+-..+.-.|+-+.+..+........ .-|....+.+...-.+.                |++.+|...|++..... +
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~----------------g~~~~A~~~~rkA~~l~-p  131 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRN----------------GNFGEAVSVLRKAARLA-P  131 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHh----------------cchHHHHHHHHHHhccC-C
Confidence            334444555666666666665533221 22333333344444443                57888888888877655 7


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684          188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL  266 (593)
Q Consensus       188 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L  266 (593)
                      +|..+|+.+--+|.+.|+.++|..-|.+..+.  .|+ ...+|++...|.-.|+.+.|..++.+....+- -|...-..|
T Consensus       132 ~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NL  208 (257)
T COG5010         132 TDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNL  208 (257)
T ss_pred             CChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHH
Confidence            77788888888888888888888888877763  333 46677788888888888888888887766543 255556667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHH
Q 007684          267 LKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       267 l~~~~~~g~~~~a~~~l~~m~  287 (593)
                      .-+....|++++|..+...-+
T Consensus       209 Al~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         209 ALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHhhcCChHHHHhhccccc
Confidence            777777888888877655443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.20  E-value=0.023  Score=57.74  Aligned_cols=148  Identities=16%  Similarity=0.116  Sum_probs=104.6

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      +-.+.+.|-...+...|++++-+..+. ++-|+.....|-.+|-+.                |+-..|+..+-+-.. -.
T Consensus       561 l~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe----------------gdksqafq~~ydsyr-yf  622 (840)
T KOG2003|consen  561 LVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE----------------GDKSQAFQCHYDSYR-YF  622 (840)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc----------------cchhhhhhhhhhccc-cc
Confidence            333334444444444444444332222 222444445555555554                688888887765543 34


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHH-HhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF-CKLGNTDKAYEVDAHMGESGVVPEEPELSA  265 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  265 (593)
                      +-|..|..-|...|....-+++|..+|++..-  +.|+..-|-.||..| .+.|++.+|+++|++..+ .+.-|...+.-
T Consensus       623 p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkf  699 (840)
T KOG2003|consen  623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKF  699 (840)
T ss_pred             CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHH
Confidence            77889999999999999999999999998765  779999999888554 578999999999999865 56667788888


Q ss_pred             HHHHHHhcCC
Q 007684          266 LLKLSVDAKK  275 (593)
Q Consensus       266 Ll~~~~~~g~  275 (593)
                      |++.+...|.
T Consensus       700 lvri~~dlgl  709 (840)
T KOG2003|consen  700 LVRIAGDLGL  709 (840)
T ss_pred             HHHHhccccc
Confidence            8888887774

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.16  E-value=0.03  Score=58.89  Aligned_cols=64  Identities=13%  Similarity=0.097  Sum_probs=50.4

Q ss_pred             CHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHh
Q 007684          371 DPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQ  439 (593)
Q Consensus       371 ~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~  439 (593)
                      .|.|...|+.+...++...+..+|++.|++.++-.+.|--+-.++-|++++.     +-.++++++|..
T Consensus       460 ~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-----G~ykEA~~hlL~  523 (579)
T KOG1125|consen  460 KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-----GAYKEAVKHLLE  523 (579)
T ss_pred             CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-----hhHHHHHHHHHH
Confidence            4567788999999999999999999999999998887766666666666655     345677777765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.13  E-value=0.0098  Score=61.61  Aligned_cols=111  Identities=13%  Similarity=0.106  Sum_probs=80.9

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      ++++.|.++|+++.+..  |+.  ...|++.+...++-.+|.+++++..+..  | +......-...+.+.++.+.|.++
T Consensus       183 ~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~~~~lAL~i  256 (395)
T PF09295_consen  183 QRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKKKYELALEI  256 (395)
T ss_pred             ccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            47888888888888765  553  3457777777888888888888877532  3 233334444556788888888888


Q ss_pred             HHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684          248 DAHMGESGVVPEEP-ELSALLKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       248 ~~~m~~~g~~p~~~-t~~~Ll~~~~~~g~~~~a~~~l~~m~  287 (593)
                      .+++.+  ..|+.. +|..|..+|...|+++.|+..++.+-
T Consensus       257 Ak~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  257 AKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            888874  346654 68888888888888888888887764

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.12  E-value=0.023  Score=63.61  Aligned_cols=162  Identities=12%  Similarity=0.034  Sum_probs=122.2

Q ss_pred             hcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCCCCCCCCCCCcccccccHHHHHH
Q 007684           98 ARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFE  176 (593)
Q Consensus        98 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~  176 (593)
                      .........+..|-....+.|..++|..+++...+.  .|+....-..+ ..+.+.                +++++|..
T Consensus        80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~----------------~~~eeA~~  141 (694)
T PRK15179         80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQ----------------QGIEAGRA  141 (694)
T ss_pred             HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHh----------------ccHHHHHH
Confidence            344556777889999999999999999999999887  77765544444 355554                59999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684          177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG  255 (593)
Q Consensus       177 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g  255 (593)
                      .+++..... +-+....+.+..++.+.|+.++|..+|++....+  |+ ..++...-.++-+.|+.++|...|+...+. 
T Consensus       142 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-  217 (694)
T PRK15179        142 EIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-  217 (694)
T ss_pred             HHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence            999999876 5566778888889999999999999999999733  55 577888888999999999999999998752 


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684          256 VVPEEPELSALLKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       256 ~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~  287 (593)
                      ..|....|+.++.      +...-..+++++.
T Consensus       218 ~~~~~~~~~~~~~------~~~~~~~~~~~~~  243 (694)
T PRK15179        218 IGDGARKLTRRLV------DLNADLAALRRLG  243 (694)
T ss_pred             hCcchHHHHHHHH------HHHHHHHHHHHcC
Confidence            2244455555433      2333444555553

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.09  E-value=0.022  Score=65.47  Aligned_cols=205  Identities=11%  Similarity=0.065  Sum_probs=140.1

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ---|....+.+..++|.+++++.+. ....++ ...-...|-++++.-.--|.-+...++|+++.+..  -....|..|+
T Consensus      1462 I~YMaf~LelsEiekAR~iaerAL~-tIN~RE-eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1462 IRYMAFHLELSEIEKARKIAERALK-TINFRE-EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLL 1537 (1710)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhh-hCCcch-hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHH
Confidence            3344455667777777777766551 110000 00011236666666666677778888888887752  1234566667


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR  226 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  226 (593)
                      ..|...                +..++|-++|+.|.+.- .-....|...+..+.+..+-+.|..++++..+  ..|...
T Consensus      1538 ~iy~k~----------------ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~e 1598 (1710)
T KOG1070|consen 1538 GIYEKS----------------EKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQE 1598 (1710)
T ss_pred             HHHHHh----------------hcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhh
Confidence            777776                48899999999998754 25667888889999999999999999998876  336632


Q ss_pred             c---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH
Q 007684          227 S---YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE  295 (593)
Q Consensus       227 t---y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~  295 (593)
                      .   -.-.+..-.+.|+.+.+..+|+.....-- -....|+..|+.-.++|..+.+..+|++..+.+..|..
T Consensus      1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred             hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence            2   22223333468999999999998875332 23456999999999999999999999999987776654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.09  E-value=0.018  Score=51.18  Aligned_cols=115  Identities=11%  Similarity=0.040  Sum_probs=85.6

Q ss_pred             ccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHhcCChhH
Q 007684          169 LGLKRGFEIFQQMITDKVDPN---EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL--RSYGPALFGFCKLGNTDK  243 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~  243 (593)
                      ++...+.+.++.+.... +.+   ....-.+...+...|++++|...|+........|..  ...-.+...+...|++++
T Consensus        25 ~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   25 GDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            47889999999998865 333   223334557788899999999999999986633332  233446778888999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          244 AYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       244 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      |...++......+  ....+..+.+.|.+.|+.++|...|++.
T Consensus       104 Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  104 ALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            9999977543333  3345667888999999999999998763

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.04  E-value=0.033  Score=57.57  Aligned_cols=134  Identities=17%  Similarity=0.146  Sum_probs=75.5

Q ss_pred             cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC-HHHH
Q 007684          116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN-EATF  193 (593)
Q Consensus       116 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty  193 (593)
                      ..|++++|+..++.+...  .||..-|..+.. .+...                ++..+|.+.++.+....  |+ ....
T Consensus       318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~----------------nk~~~A~e~~~kal~l~--P~~~~l~  377 (484)
T COG4783         318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEA----------------NKAKEAIERLKKALALD--PNSPLLQ  377 (484)
T ss_pred             HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc----------------CChHHHHHHHHHHHhcC--CCccHHH
Confidence            445666666666666655  555555555544 44444                36666666666665543  33 3344


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684          194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA  273 (593)
Q Consensus       194 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~  273 (593)
                      -++..++.+.|++.+|..+++..... .+-|...|..|-.+|...|+..+|.....++                  |.-.
T Consensus       378 ~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~  438 (484)
T COG4783         378 LNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALA  438 (484)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhC
Confidence            44555666666666666666665543 2234556666666666666666555554443                  2345


Q ss_pred             CCHHHHHHHHHHHHH
Q 007684          274 KKVDKVYEILHRLRT  288 (593)
Q Consensus       274 g~~~~a~~~l~~m~~  288 (593)
                      |+++.|...+.+..+
T Consensus       439 G~~~~A~~~l~~A~~  453 (484)
T COG4783         439 GRLEQAIIFLMRASQ  453 (484)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            666666666655544

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.011  Score=60.79  Aligned_cols=117  Identities=10%  Similarity=0.133  Sum_probs=78.0

Q ss_pred             cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHHHHHHH----HHhcC
Q 007684          168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL----RSYGPALFG----FCKLG  239 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~----~~~~g  239 (593)
                      ++++++++..|++.+++- +--...||.....+...++++.|.+.|+..++  +.|+.    ..-.++|.-    +-=.+
T Consensus       441 ~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qwk~  517 (606)
T KOG0547|consen  441 QHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQWKE  517 (606)
T ss_pred             HHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhchhh
Confidence            357888888888877665 44556788888888888888888888887765  22331    011111111    11237


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       240 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ++..|..++++..+..-+ .+..|..|...-...|+.++|+++|++-..
T Consensus       518 d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  518 DINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             hHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            788888888877654321 345588888888888888888888887654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.04  E-value=0.032  Score=52.42  Aligned_cols=127  Identities=7%  Similarity=0.061  Sum_probs=97.5

Q ss_pred             cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007684          116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS  195 (593)
Q Consensus       116 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~  195 (593)
                      ..++.+++...++...+.. +.|...|..|-..|...                |+.++|.+.|++..+.. +-+...+..
T Consensus        51 ~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~----------------g~~~~A~~a~~~Al~l~-P~~~~~~~~  112 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWR----------------NDYDNALLAYRQALQLR-GENAELYAA  112 (198)
T ss_pred             CchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            3667788887887766653 34666777766677776                59999999999988876 557778888


Q ss_pred             HHHHH-HhcCC--hHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 007684          196 VARLA-VAKED--PEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPEL  263 (593)
Q Consensus       196 li~~~-~~~g~--~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  263 (593)
                      +..++ ...|+  .++|.+++++..+..  | +...+..+...+.+.|++++|...|+++.+.. .|+..-+
T Consensus       113 lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~  181 (198)
T PRK10370        113 LATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT  181 (198)
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence            88864 67777  599999999998844  5 46788889999999999999999999998643 3444333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.03  E-value=0.052  Score=60.79  Aligned_cols=116  Identities=9%  Similarity=0.031  Sum_probs=99.9

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      |..++|..+++...+.. +-+......++..+.+.+++|+|....++.....  |+ ......+-.++.+.|+.++|.++
T Consensus       100 g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~  176 (694)
T PRK15179        100 HRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSEQADAC  176 (694)
T ss_pred             CCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHH
Confidence            69999999999999875 4566788899999999999999999999998843  66 45677778888999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      |++....+ .-+...+..+-.++...|+.++|...|++..+
T Consensus       177 y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        177 FERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999733 23467788999999999999999999999876

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=97.01  E-value=0.097  Score=49.96  Aligned_cols=143  Identities=9%  Similarity=0.018  Sum_probs=98.6

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |+-+....+........ +-|....+..+....+.|++..|...+.+..... ++|...|+.+--+|-+.|+.+.|..-|
T Consensus        80 G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay  157 (257)
T COG5010          80 GDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAY  157 (257)
T ss_pred             ccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHH
Confidence            35556666655544332 4455666778888899999999999999887643 367889999999999999999999888


Q ss_pred             HHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccc
Q 007684          249 AHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVL  316 (593)
Q Consensus       249 ~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~  316 (593)
                      .+..+  +.|+. ..+|.|.-.|.-.|+.+.|..++......+...+. .-+-+.-.....++...++.
T Consensus       158 ~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~-v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         158 RQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR-VRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             HHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH-HHHHHHHHHhhcCChHHHHh
Confidence            88775  33433 34788888888889999999988888765443332 22333333444454444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.00  E-value=0.016  Score=59.95  Aligned_cols=158  Identities=8%  Similarity=-0.067  Sum_probs=107.0

Q ss_pred             HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHH---HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRH---KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ...+...|++++|...+.+.+       ...+.+...+..   ........+....+.+.++.  .....|+......++
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l-------~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~  120 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLL-------DDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGML  120 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-------HHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHH
Confidence            345678899999988886666       333444444442   12222234555555555554  222344443333333


Q ss_pred             H-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC
Q 007684          147 Y-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI-PPK  224 (593)
Q Consensus       147 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~  224 (593)
                      . .+...                |++++|.+.+++..+.. +.+...+..+...+...|++++|...+++.....- .|+
T Consensus       121 a~~~~~~----------------G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~  183 (355)
T cd05804         121 AFGLEEA----------------GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM  183 (355)
T ss_pred             HHHHHHc----------------CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc
Confidence            3 44443                69999999999999876 55677888999999999999999999999876321 133


Q ss_pred             c--ccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          225 L--RSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       225 ~--~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      .  ..|-.+...+...|+.++|.+++++...
T Consensus       184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         184 LRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            2  2455688889999999999999999864

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.00  E-value=0.018  Score=55.76  Aligned_cols=171  Identities=18%  Similarity=0.071  Sum_probs=116.2

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCH-HH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP---EGVLRHKLDMCSKRGDVFEALRLYDDARSNGIT-LSQ-HH  141 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t  141 (593)
                      -.+...+.+.|++++|...+.+..       ...+.+   ...+..+...+.+.|++++|...++++.+..-. |.. .+
T Consensus        37 ~~~g~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        37 YEEAKEALDSGDYTEAIKYFEALE-------SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            555567889999999999986665       222222   235677888999999999999999999876321 111 12


Q ss_pred             HHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcC
Q 007684          142 YNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF-----------------TSVARLAVAKE  204 (593)
Q Consensus       142 y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty-----------------~~li~~~~~~g  204 (593)
                      +..+-..+...        +.......|+.++|.+.|+.+...... +....                 -.+...+.+.|
T Consensus       110 ~~~~g~~~~~~--------~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g  180 (235)
T TIGR03302       110 YYLRGLSNYNQ--------IDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG  180 (235)
T ss_pred             HHHHHHHHHHh--------cccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            22222233321        011122346899999999999876422 22121                 14556778899


Q ss_pred             ChHHHHHHHHHHHhCCC-CC-CcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          205 DPEMAFDLVKQMKSFGI-PP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       205 ~~~~A~~l~~~m~~~g~-~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      ++++|...+++..+..- .| ....+..+..++.+.|+.++|...++.+..
T Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999986421 12 246788899999999999999999988864

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.98  E-value=0.026  Score=49.22  Aligned_cols=94  Identities=21%  Similarity=0.184  Sum_probs=77.6

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |+.++|.+.|+.....+ +.+...+..+...+...|++++|..++++..+.+ +.+...+..+...|...|+.++|...|
T Consensus        31 ~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~  108 (135)
T TIGR02552        31 GRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKAL  108 (135)
T ss_pred             ccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            69999999999998876 5678889999999999999999999999987754 234677777888999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHH
Q 007684          249 AHMGESGVVPEEPELSAL  266 (593)
Q Consensus       249 ~~m~~~g~~p~~~t~~~L  266 (593)
                      +...+..  |+...+..+
T Consensus       109 ~~al~~~--p~~~~~~~~  124 (135)
T TIGR02552       109 DLAIEIC--GENPEYSEL  124 (135)
T ss_pred             HHHHHhc--cccchHHHH
Confidence            9988643  665554443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.98  E-value=0.03  Score=49.69  Aligned_cols=127  Identities=13%  Similarity=0.052  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH---HHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNVLL---YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ  179 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~ll---~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~  179 (593)
                      ...|..++..+. .++...+...++.+.+..  |+. ...-..|   ..+...                |++++|.+.|+
T Consensus        12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~----------------g~~~~A~~~l~   72 (145)
T PF09976_consen   12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQ----------------GDYDEAKAALE   72 (145)
T ss_pred             HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHC----------------CCHHHHHHHHH
Confidence            345888888884 899999999999998873  332 2222222   234443                69999999999


Q ss_pred             HHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684          180 QMITDKVDPNE--ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       180 ~M~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m  251 (593)
                      ........|+.  ...-.|...+...|++++|+..++.......  ....+......|.+.|+.++|...|+..
T Consensus        73 ~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   73 KALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            99987633332  2444577888999999999999977544332  3346667789999999999999999863

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.96  E-value=0.25  Score=47.39  Aligned_cols=189  Identities=10%  Similarity=0.043  Sum_probs=111.4

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHCCCCCCHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEAL-RLYDDARSNGITLSQHHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~ty~~l  145 (593)
                      ..+-++|...|+......-.          +.+..+|-.....+-......+..++-+ ++.+.+......-|. ++-.+
T Consensus        45 ~y~~raylAlg~~~~~~~eI----------~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~-i~~l~  113 (299)
T KOG3081|consen   45 VYMYRAYLALGQYQIVISEI----------KEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNL-IDLLL  113 (299)
T ss_pred             HHHHHHHHHccccccccccc----------ccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhH-HHHHH
Confidence            77778888888777655544          2444344444544444444455544443 444444444332221 22211


Q ss_pred             -HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684          146 -LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK  224 (593)
Q Consensus       146 -l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  224 (593)
                       ...|...                |++++|++......    ..+....+  +..+.+..+.|.|.+.+++|.+-   -+
T Consensus       114 aa~i~~~~----------------~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---de  168 (299)
T KOG3081|consen  114 AAIIYMHD----------------GDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DE  168 (299)
T ss_pred             hhHHhhcC----------------CChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence             1244443                58888887776511    23333333  33345667788888888888762   23


Q ss_pred             cccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC
Q 007684          225 LRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ  292 (593)
Q Consensus       225 ~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~  292 (593)
                      ..|-+-|..++.+    .+.+.+|+-+|++|-+ ...|+..+.+-...++...|++++|..+++......-.
T Consensus       169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~  239 (299)
T KOG3081|consen  169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK  239 (299)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            4455555555543    4567788888888864 25577788888888888888888888888887764433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.94  E-value=0.064  Score=59.28  Aligned_cols=228  Identities=9%  Similarity=0.046  Sum_probs=135.0

Q ss_pred             HHhhcCCccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007684           54 DIKQNRFSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDAR  131 (593)
Q Consensus        54 ~m~~~g~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  131 (593)
                      .+..+.+.|....  ..+-....+.|.++.|.-.|...+       ...+..-..+---+..|-+.|+...|.+-|.+|.
T Consensus       196 ~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI-------~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~  268 (895)
T KOG2076|consen  196 WLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI-------QANPSNWELIYERSSLYQKTGDLKRAMETFLQLL  268 (895)
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH-------hcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            4444555554444  556666666666666666665444       1122222233445566777788888888888877


Q ss_pred             HCCCCCCHHHHHHHH----HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 007684          132 SNGITLSQHHYNVLL----YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD-KVDPNEATFTSVARLAVAKEDP  206 (593)
Q Consensus       132 ~~g~~p~~~ty~~ll----~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~  206 (593)
                      +..-.-|..-+-.++    ..+...                ++-+.|.+.++.-... +-..+...++.++..+.+...+
T Consensus       269 ~~~p~~d~er~~d~i~~~~~~~~~~----------------~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~  332 (895)
T KOG2076|consen  269 QLDPPVDIERIEDLIRRVAHYFITH----------------NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQS  332 (895)
T ss_pred             hhCCchhHHHHHHHHHHHHHHHHHh----------------hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHH
Confidence            662211212222222    223332                3557888888776552 2245666788899999999999


Q ss_pred             HHHHHHHHHHHhC---------------------------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 007684          207 EMAFDLVKQMKSF---------------------------GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE  259 (593)
Q Consensus       207 ~~A~~l~~~m~~~---------------------------g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  259 (593)
                      +.|......+...                           ++.+++...- +.-++......+....+.....+..+.|+
T Consensus       333 d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~  411 (895)
T KOG2076|consen  333 DKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICLVHLKERELLEALLHFLVEDNVWVS  411 (895)
T ss_pred             HHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-HhhhhhcccccchHHHHHHHHHHhcCChh
Confidence            9998888887651                           1223333311 22334444455555555666666664443


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684          260 --EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF  305 (593)
Q Consensus       260 --~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~  305 (593)
                        ...|--+.++|...|+++.|..+|..+......-+...|--+-..|
T Consensus       412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~  459 (895)
T KOG2076|consen  412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY  459 (895)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence              4458888999999999999999999997754444444444444444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.93  E-value=0.16  Score=57.73  Aligned_cols=163  Identities=10%  Similarity=-0.014  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCCCCCC--CCCCcccccccHHHHHHHHHHH
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSE--NGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~--~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      ..+-.|+..+...+++++|.++.++..+.  .|+...+-.++. ++.+.+....+.  .+++.+....++.-+..+...|
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i  109 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKI  109 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHH
Confidence            34899999999999999999999977766  566554444433 444433222111  3334444455665556666666


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 007684          182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP  261 (593)
Q Consensus       182 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  261 (593)
                      ...+  -+..++-.+..+|-+.|+.++|..+++++.+.. .-|...-|.+...|+.. ++++|.+++.+....       
T Consensus       110 ~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------  178 (906)
T PRK14720        110 LLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------  178 (906)
T ss_pred             Hhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------
Confidence            6543  344578888889999999999999999998866 24477888888999988 999999998887643       


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          262 ELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       262 t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                              +...+++..+.+++.++.+
T Consensus       179 --------~i~~kq~~~~~e~W~k~~~  197 (906)
T PRK14720        179 --------FIKKKQYVGIEEIWSKLVH  197 (906)
T ss_pred             --------HHhhhcchHHHHHHHHHHh
Confidence                    3444455566666665554

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.91  E-value=0.027  Score=58.35  Aligned_cols=120  Identities=12%  Similarity=0.094  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS  270 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~  270 (593)
                      .-..+|++.+...++++.|.++++++.+..  |+  ....++..+...++-.+|.+++++..... +-+...+..-.+.|
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            445566777788899999999999999854  54  44557888888888899999999888532 23555567777788


Q ss_pred             HhcCCHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHhcchhhhhcccc
Q 007684          271 VDAKKVDKVYEILHRLRTLVRQVSES-TFKIIEDWFDSVDAAEIGVLN  317 (593)
Q Consensus       271 ~~~g~~~~a~~~l~~m~~~~~~~~~~-t~~~l~~~~~~~~~~~~~~~~  317 (593)
                      .+.++.+.|.++.+++.+  ..|+.. ++..|...|...++.+.+.-.
T Consensus       245 l~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALla  290 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLA  290 (395)
T ss_pred             HhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            999999999999999976  456544 889999999888876666433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=96.90  E-value=0.065  Score=59.25  Aligned_cols=194  Identities=13%  Similarity=0.075  Sum_probs=115.8

Q ss_pred             CCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCC
Q 007684           77 STVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGS  155 (593)
Q Consensus        77 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~  155 (593)
                      |+.++|+.++.++.       ...+.....|-.|-..|-+.|+.++++..+-.+--  +.|+ .--|-.+-....+    
T Consensus       153 g~~eeA~~i~~EvI-------kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~----  219 (895)
T KOG2076|consen  153 GDLEEAEEILMEVI-------KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQ----  219 (895)
T ss_pred             CCHHHHHHHHHHHH-------HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHh----
Confidence            66666666665554       33333444566666666666666666555433222  2232 2233322223333    


Q ss_pred             CCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc----cHHHH
Q 007684          156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR----SYGPA  231 (593)
Q Consensus       156 ~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----ty~~l  231 (593)
                                  .|.+.+|.-.|.+..+.. +++-..+--=+..|-+.|+...|.+-|.+|....-..|..    +--.+
T Consensus       220 ------------~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~  286 (895)
T KOG2076|consen  220 ------------LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV  286 (895)
T ss_pred             ------------cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence                        367888888888887776 5565555566677888888888888888887632211111    12224


Q ss_pred             HHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHH
Q 007684          232 LFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES  296 (593)
Q Consensus       232 i~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~  296 (593)
                      +..|...++-+.|.+.++.... .+-.-+...++.++..+.+...+++|......+......++.+
T Consensus       287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~  352 (895)
T KOG2076|consen  287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS  352 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence            5556667777777777776554 2333455567778888888888888888877776644444443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.057  Score=56.70  Aligned_cols=134  Identities=10%  Similarity=0.029  Sum_probs=107.3

Q ss_pred             cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCC----CcccHHHHHHHHHhcCCh
Q 007684          168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS--FGIPP----KLRSYGPALFGFCKLGNT  241 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p----~~~ty~~li~~~~~~g~~  241 (593)
                      .+.++.|.+.|.+..... +-|...++-+--.....+.+.+|..+|+....  ..+.+    -..+++.|..+|.+.+..
T Consensus       393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~  471 (611)
T KOG1173|consen  393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY  471 (611)
T ss_pred             hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence            358999999999887654 56778888888888888999999999998762  11112    234688889999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684          242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF  305 (593)
Q Consensus       242 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~  305 (593)
                      ++|...++...... +-+..++.++.-.|...|+.+.|.+.|++...  +.|+..+...++..+
T Consensus       472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA  532 (611)
T ss_pred             HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence            99999999987643 34778899998899999999999999999864  778887777777654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.02  Score=54.53  Aligned_cols=155  Identities=19%  Similarity=0.172  Sum_probs=113.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      .-.-...|+..|++++|++....    |-.......|.-|..=.                  .+++-|...+++|.+-  
T Consensus       111 ~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~------------------~r~d~A~~~lk~mq~i--  166 (299)
T KOG3081|consen  111 LLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKM------------------HRFDLAEKELKKMQQI--  166 (299)
T ss_pred             HHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcc--
Confidence            34445568999999999998876    22234444443333222                  2788999999999964  


Q ss_pred             CCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 007684          187 DPNEATFTSVARLAVA----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE  262 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  262 (593)
                       -+..|.+-|..++.+    .+.+..|+-+|++|.++ ..|+..+-|-...++...|++++|+.++++.....- -+..+
T Consensus       167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpet  243 (299)
T KOG3081|consen  167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPET  243 (299)
T ss_pred             -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHH
Confidence             377888878777765    46789999999999874 458888888888999999999999999999987554 35677


Q ss_pred             HHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 007684          263 LSALLKLSVDAKKVD-KVYEILHRLRT  288 (593)
Q Consensus       263 ~~~Ll~~~~~~g~~~-~a~~~l~~m~~  288 (593)
                      +..+|......|... -..+.+.+++.
T Consensus       244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  244 LANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            777877777777654 44566667655

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.67  E-value=0.024  Score=44.64  Aligned_cols=93  Identities=15%  Similarity=0.119  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007684          193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV  271 (593)
Q Consensus       193 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~  271 (593)
                      +..+...+...|++++|..++++..+..  |+ ...+..+...+...|++++|.+.++....... .+...+..+...+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHH
Confidence            4566677778888888888888887632  33 35666677788888888888888888765432 23356777777888


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 007684          272 DAKKVDKVYEILHRLRT  288 (593)
Q Consensus       272 ~~g~~~~a~~~l~~m~~  288 (593)
                      ..|+.++|...+.+..+
T Consensus        80 ~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          80 KLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHhHHHHHHHHHHHHc
Confidence            88888888888777654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.65  E-value=0.023  Score=56.64  Aligned_cols=116  Identities=14%  Similarity=0.155  Sum_probs=54.2

Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          170 GLKRGFEIFQQMITDKVDPNEATFTSVARL-AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      ..+.|-.+|.+.++.+ ..+...|-..+.. +...++.+.|.++|+...+. +.-+...+..-|.-+.+.|+.+.|..+|
T Consensus        16 g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lf   93 (280)
T PF05843_consen   16 GIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALF   93 (280)
T ss_dssp             HHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             ChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            4555555555554332 1222223333332 12234444455555555432 2123344444455555555555555555


Q ss_pred             HHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          249 AHMGESGVVP---EEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       249 ~~m~~~g~~p---~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +..... +.+   -...|...++.=.+.|+.+.+..+.+++.+
T Consensus        94 er~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   94 ERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555432 211   123566666666677777777777777665

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN02789 farnesyltranstransferase

Probab=96.50  E-value=0.34  Score=49.15  Aligned_cols=215  Identities=9%  Similarity=0.035  Sum_probs=142.3

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRG-DVFEALRLYDDARSNGITLSQHHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~ty~~l  145 (593)
                      ..+-..+...++.++|...+.+++       ...+....+|+..-..+.+.| ++++++..++++.+..-+ +..+|+..
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI-------~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R  112 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVI-------RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHR  112 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHH-------HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHH
Confidence            455556677778888888886665       333334445666555566666 689999999998877433 44455543


Q ss_pred             HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684          146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL  225 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  225 (593)
                      --++.+.+              ....+++++++++|.+.. +-|..+|+...-++...|+++++++.++++.+.+. -+.
T Consensus       113 ~~~l~~l~--------------~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~  176 (320)
T PLN02789        113 RWLAEKLG--------------PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNN  176 (320)
T ss_pred             HHHHHHcC--------------chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-Cch
Confidence            32333321              012367899999998877 56888999999999999999999999999998664 345


Q ss_pred             ccHHHHHHHHHhc---CCh----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHccCCCC
Q 007684          226 RSYGPALFGFCKL---GNT----DKAYEVDAHMGESGVVPEEPELSALLKLSVDAK----KVDKVYEILHRLRTLVRQVS  294 (593)
Q Consensus       226 ~ty~~li~~~~~~---g~~----~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g----~~~~a~~~l~~m~~~~~~~~  294 (593)
                      ..|+.....+.+.   |..    +++.+...++..... -|...|+.+...+...+    ...+|.+.+.+....+ ..+
T Consensus       177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s  254 (320)
T PLN02789        177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNH  254 (320)
T ss_pred             hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCc
Confidence            6676666555554   222    456666656654332 35566888888887733    4466888887765522 224


Q ss_pred             HHHHHHHHHHHhc
Q 007684          295 ESTFKIIEDWFDS  307 (593)
Q Consensus       295 ~~t~~~l~~~~~~  307 (593)
                      ......|+..|+.
T Consensus       255 ~~al~~l~d~~~~  267 (320)
T PLN02789        255 VFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHHHh
Confidence            4456778887753

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.12  Score=54.77  Aligned_cols=178  Identities=13%  Similarity=0.109  Sum_probs=86.6

Q ss_pred             HHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-H-HH
Q 007684           71 LAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL-L-YV  148 (593)
Q Consensus        71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l-l-~~  148 (593)
                      ..+.+.|.+++|.....+++       ...+.+..++..-+.+..+.+.+++|+.+.+.=.      -..+++.. + .+
T Consensus        20 n~~~~~~e~e~a~k~~~Kil-------~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKA   86 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKIL-------SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKA   86 (652)
T ss_pred             HHhccchHHHHHHHHHHHHH-------hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHH
Confidence            34555666666666665555       4444555556666667777777777775544311      11222222 1 13


Q ss_pred             HHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc
Q 007684          149 CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS  227 (593)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  227 (593)
                      |+.-+              .++.++|+..++     |..+ |..+...-...+.+.|++++|+++|+.+.+.+. ++   
T Consensus        87 Yc~Yr--------------lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---  143 (652)
T KOG2376|consen   87 YCEYR--------------LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---  143 (652)
T ss_pred             HHHHH--------------cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---
Confidence            33211              246667766666     2222 223445555556677777777777777766544 22   


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHH
Q 007684          228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK---LSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       228 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~---~~~~~g~~~~a~~~l~~m~~  288 (593)
                      |..-+.+-+-+-  ..+..+- .|......| +.+|..+.+   .+...|++++|+++++....
T Consensus       144 ~d~~~r~nl~a~--~a~l~~~-~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  144 QDEERRANLLAV--AAALQVQ-LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             HHHHHHHHHHHH--HHhhhHH-HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            222222111100  0011111 233333444 334444443   23356777777777766643

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.47  E-value=0.042  Score=43.19  Aligned_cols=83  Identities=14%  Similarity=0.155  Sum_probs=69.2

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|.++|++..+.. +.+...+..+...+...+++++|.+.+++..+... .+..++..+...+...|+.++|.+.+
T Consensus        14 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~   91 (100)
T cd00189          14 GDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYEEALEAY   91 (100)
T ss_pred             hcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHHHHHHHH
Confidence            69999999999988765 44557788899999999999999999999887432 33457888889999999999999999


Q ss_pred             HHHHh
Q 007684          249 AHMGE  253 (593)
Q Consensus       249 ~~m~~  253 (593)
                      ....+
T Consensus        92 ~~~~~   96 (100)
T cd00189          92 EKALE   96 (100)
T ss_pred             HHHHc
Confidence            88764

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.061  Score=52.07  Aligned_cols=161  Identities=14%  Similarity=0.035  Sum_probs=83.7

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRH-KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l  145 (593)
                      +.|-.+|-..-++.+|.+.|.+.-.        ..|....|.. --..+.+++.+..|+++...|...   |+...=..=
T Consensus        48 SlLgyCYY~~Q~f~~AA~CYeQL~q--------l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lq  116 (459)
T KOG4340|consen   48 SLLGYCYYRLQEFALAAECYEQLGQ--------LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQ  116 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--------hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHH
Confidence            5555666666666666666644330        1111222322 123345566666666666655543   122111111


Q ss_pred             HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCC
Q 007684          146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPK  224 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~  224 (593)
                      |.+-..-              ..|++..+..+.++.-..|   +..+.+...-...+.|+.+.|.+-|+...+ .|. -.
T Consensus       117 LqaAIkY--------------se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy-qp  178 (459)
T KOG4340|consen  117 LQAAIKY--------------SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY-QP  178 (459)
T ss_pred             HHHHHhc--------------ccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCC-Cc
Confidence            2111110              0135555555555544322   333444444445677888888888887766 344 34


Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684          225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV  257 (593)
Q Consensus       225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~  257 (593)
                      ...||..+.-| +.|+.+.|.+...++.+.|++
T Consensus       179 llAYniALaHy-~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  179 LLAYNLALAHY-SSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence            56777555444 566777888888887776643

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.33  E-value=0.29  Score=52.52  Aligned_cols=31  Identities=3%  Similarity=0.028  Sum_probs=16.5

Q ss_pred             HHHHHHHHHhhhhhhHHhHHHHHHHHHhcCC
Q 007684          377 NFASSLSNLACQREVRSDFNKFQEWLGRHGP  407 (593)
Q Consensus       377 ~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~  407 (593)
                      .+...-..+-...+++.|.+-|.+.+..++.
T Consensus       819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d  849 (913)
T KOG0495|consen  819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPD  849 (913)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            3333334444555666666666666655443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.33  E-value=0.096  Score=52.21  Aligned_cols=119  Identities=9%  Similarity=0.052  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG-FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL  269 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~  269 (593)
                      .+|..+++..-+.+..+.|..+|++..+.+. .+...|-..... |.-.++.+.|..+|+...+. +..+...|..-++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            4688889999999999999999999986432 223334333333 33356777799999998753 44566778888899


Q ss_pred             HHhcCCHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHhcchhhh
Q 007684          270 SVDAKKVDKVYEILHRLRTLVRQVS---ESTFKIIEDWFDSVDAAE  312 (593)
Q Consensus       270 ~~~~g~~~~a~~~l~~m~~~~~~~~---~~t~~~l~~~~~~~~~~~  312 (593)
                      +.+.|+.+.|..+|++.... +...   ...|...+..=...|..+
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~  124 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLE  124 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999998764 2222   235555555444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.26  E-value=0.35  Score=48.40  Aligned_cols=139  Identities=17%  Similarity=0.254  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC---CCCHHHHHHH
Q 007684          120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV---DPNEATFTSV  196 (593)
Q Consensus       120 ~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~---~p~~~ty~~l  196 (593)
                      ++..+.+++.|.+.|.+-+..+|-+......... .+         -..-...+|.++|+.|++...   .++..++.+|
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~-~~---------~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~l  147 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE-KE---------DYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAAL  147 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc-cc---------cHHHHHHHHHHHHHHHHHhCccccCccchhHHHH
Confidence            5566788999999999988887776544443310 00         001267889999999998652   4667778888


Q ss_pred             HHHHHhcCC----hHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684          197 ARLAVAKED----PEMAFDLVKQMKSFGIPPKLR-SYGPALFGFCKLGN---TDKAYEVDAHMGESGVVPEEPELSALLK  268 (593)
Q Consensus       197 i~~~~~~g~----~~~A~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~Ll~  268 (593)
                      +..  ...+    .+.+..+|+.+.+.|+...-. -+-+-|-+++....   +.++.++++.+.+.|+++....|..+.-
T Consensus       148 LA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  148 LAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             Hhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence            665  3333    356788888888888865532 23333444443222   4478899999999999988888776544


Q ss_pred             HH
Q 007684          269 LS  270 (593)
Q Consensus       269 ~~  270 (593)
                      ..
T Consensus       226 La  227 (297)
T PF13170_consen  226 LA  227 (297)
T ss_pred             HH
Confidence            33

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.23  E-value=0.15  Score=52.82  Aligned_cols=155  Identities=10%  Similarity=-0.011  Sum_probs=116.8

Q ss_pred             HHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH
Q 007684           72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCS  150 (593)
Q Consensus        72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll-~~~~  150 (593)
                      .+-..|++++|+..+++..       ...+.+........+.+.+.++..+|.+.++.+...  .|+.......+ .++.
T Consensus       315 ~~~~~~~~d~A~~~l~~L~-------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all  385 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLI-------AAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL  385 (484)
T ss_pred             HHHHhcccchHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence            4557889999999997755       444455556777888899999999999999999987  67753333333 3666


Q ss_pred             ccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH
Q 007684          151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP  230 (593)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~  230 (593)
                      +.                |+.++|+.+++...... +-|...|..|..+|...|+..+|..-..++              
T Consensus       386 ~~----------------g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~--------------  434 (484)
T COG4783         386 KG----------------GKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG--------------  434 (484)
T ss_pred             hc----------------CChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH--------------
Confidence            65                69999999999988776 778999999999999999999888766544              


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007684          231 ALFGFCKLGNTDKAYEVDAHMGESG--VVPEEPELSALLKLS  270 (593)
Q Consensus       231 li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~Ll~~~  270 (593)
                          |...|+++.|........+..  -.|+..-+..-|...
T Consensus       435 ----~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~  472 (484)
T COG4783         435 ----YALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL  472 (484)
T ss_pred             ----HHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence                556889999998888776532  234444455555544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.21  E-value=0.16  Score=56.87  Aligned_cols=104  Identities=12%  Similarity=0.117  Sum_probs=82.1

Q ss_pred             cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 007684          168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      .|.+.+|++-|-+      .-|...|..+++.+.+.|.+|+-.+.+...++..-.|...  +.+|.+|++.+++.+.+++
T Consensus      1117 ~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred             cCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence            3577777766633      2477889999999999999999999998777776667655  4799999999999877776


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      ..       -||......+.+-|...|.++.|.-+|...
T Consensus      1189 i~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1189 IA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred             hc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence            54       288888888888888888888887766654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.19  E-value=0.11  Score=43.74  Aligned_cols=97  Identities=12%  Similarity=-0.036  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHH
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK----LRSYGPALFGFCKLGNTDKAYEVDAHMGESG--VVPEEPELS  264 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~  264 (593)
                      .++-.+...+.+.|++++|.+.++++....  |+    ...+..+..++.+.|+++.|...|+.+....  .......+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence            345667777888899999999998887632  33    2345567888888899999999998887532  111244567


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          265 ALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       265 ~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      .+..++.+.|+.++|...++++.+.
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHH
Confidence            7777888888999999888888774

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=96.19  E-value=0.056  Score=55.87  Aligned_cols=96  Identities=14%  Similarity=0.127  Sum_probs=77.4

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      |++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..+++....  .|+ ...|..+..+|...|++++|...
T Consensus        16 ~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~eA~~~   92 (356)
T PLN03088         16 DDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQTAKAA   92 (356)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            68999999999998876 557778888999999999999999999999874  354 56788888899999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHH
Q 007684          248 DAHMGESGVVPEEPELSALLKL  269 (593)
Q Consensus       248 ~~~m~~~g~~p~~~t~~~Ll~~  269 (593)
                      |++..+.  .|+......++..
T Consensus        93 ~~~al~l--~P~~~~~~~~l~~  112 (356)
T PLN03088         93 LEKGASL--APGDSRFTKLIKE  112 (356)
T ss_pred             HHHHHHh--CCCCHHHHHHHHH
Confidence            9998853  4666655555433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.19  E-value=0.16  Score=46.49  Aligned_cols=114  Identities=14%  Similarity=0.130  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSAL  266 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~L  266 (593)
                      ...+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|+.++|.+.+++....  .|+ ...+..+
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l  112 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI  112 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence            34678888888999999999999999986432222  357888899999999999999999998864  343 4446666


Q ss_pred             HHHHHhcCC--------------HHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcch
Q 007684          267 LKLSVDAKK--------------VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD  309 (593)
Q Consensus       267 l~~~~~~g~--------------~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~  309 (593)
                      ..++...|+              +++|.+++++..+    .++..+..+..|+...+
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~  165 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWLKTTG  165 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHhcC
Confidence            667766665              3455555555544    55666777777775433

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.15  E-value=0.14  Score=53.58  Aligned_cols=133  Identities=11%  Similarity=0.074  Sum_probs=94.0

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684          101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ  179 (593)
Q Consensus       101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~  179 (593)
                      ..+.-+|...|....+..-+..|..+|.++++.+..+ .+..++++|.-++..                 +.+-|+++|+
T Consensus       363 ~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-----------------D~~~AfrIFe  425 (656)
T KOG1914|consen  363 IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-----------------DKETAFRIFE  425 (656)
T ss_pred             cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-----------------ChhHHHHHHH
Confidence            3445557778888777777888888888888777666 677777777766653                 6777888887


Q ss_pred             H-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684          180 Q-MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYEVDAHMG  252 (593)
Q Consensus       180 ~-M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~  252 (593)
                      - |+.-|  -+..--...+.-+.+.++-..|..+|++....++.|+  ...|..+|.-=..-|+++.+.++-+++.
T Consensus       426 LGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  426 LGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF  499 (656)
T ss_pred             HHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            5 44333  2333345566777777888888888888877766655  3677777777777888877777777664

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.13  E-value=0.055  Score=46.59  Aligned_cols=98  Identities=10%  Similarity=0.094  Sum_probs=66.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684          189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK  268 (593)
Q Consensus       189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~  268 (593)
                      |+.++.++|-++++.|+++....+++..=  |+.++...=         .+.         --....+.|+..++.+++.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~   60 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH   60 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence            57788999999999999999888887653  222221000         000         1113456788888888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHh
Q 007684          269 LSVDAKKVDKVYEILHRLRT-LVRQVSESTFKIIEDWFD  306 (593)
Q Consensus       269 ~~~~~g~~~~a~~~l~~m~~-~~~~~~~~t~~~l~~~~~  306 (593)
                      +|+..|++..|+++++...+ -++..+..++..|+.|..
T Consensus        61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            88888888888888777654 446667777777777773

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.06  E-value=0.61  Score=48.26  Aligned_cols=164  Identities=16%  Similarity=0.110  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQH-HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      ...+-.-+.+=.++..+..|..+++.....  -|-+. .|-.-+..=..                .|++..|..+|+.-.
T Consensus       107 itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~----------------LgNi~gaRqiferW~  168 (677)
T KOG1915|consen  107 ITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEM----------------LGNIAGARQIFERWM  168 (677)
T ss_pred             chHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHH----------------hcccHHHHHHHHHHH
Confidence            334555666677788888888888887765  33321 12111221111                257888999998766


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh-CCC-CCCH
Q 007684          183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE-SGV-VPEE  260 (593)
Q Consensus       183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~-~p~~  260 (593)
                      .  ..|+..++.+.|+.=.+-..++.|..++++..-  +.|++.+|--...-=-++|.+.-|..+|+...+ -|- .-++
T Consensus       169 ~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e  244 (677)
T KOG1915|consen  169 E--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE  244 (677)
T ss_pred             c--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence            4  479999999999999999999999999999876  458988888877888889999999999987664 221 1122


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          261 PELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      ..+.++...=..+..+++|.-+|+...+.
T Consensus       245 ~lfvaFA~fEe~qkE~ERar~iykyAld~  273 (677)
T KOG1915|consen  245 ILFVAFAEFEERQKEYERARFIYKYALDH  273 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444444567788888888887763

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.04  E-value=2  Score=46.46  Aligned_cols=262  Identities=11%  Similarity=-0.001  Sum_probs=156.5

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK  185 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g  185 (593)
                      +++.--..|.+.+.++-|..+|....+.- .-+...|.....+=..                .|..++-..+|++....-
T Consensus       518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~----------------hgt~Esl~Allqkav~~~  580 (913)
T KOG0495|consen  518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKS----------------HGTRESLEALLQKAVEQC  580 (913)
T ss_pred             HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHHhC
Confidence            35555666777777777777777766552 1133444333332222                367788888888877653


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684          186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA  265 (593)
Q Consensus       186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  265 (593)
                       +-.+.-+-...+-+-..|++..|..++.+.-+..- -+...|-..+..-.....++.|..+|.+...  ..|++..|--
T Consensus       581 -pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mK  656 (913)
T KOG0495|consen  581 -PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMK  656 (913)
T ss_pred             -CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHH
Confidence             44555666666677778888888888888877542 2466788888888888888888888888764  4466666665


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCc
Q 007684          266 LLKLSVDAKKVDKVYEILHRLRTLVRQVSES-TFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGK  344 (593)
Q Consensus       266 Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~-t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~  344 (593)
                      -+....-.++.++|.+++++..+  ..|+-. .|-.+=..+.+.+.++.+         +++-..+-...+++.    .-
T Consensus       657 s~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~a---------R~aY~~G~k~cP~~i----pL  721 (913)
T KOG0495|consen  657 SANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMA---------REAYLQGTKKCPNSI----PL  721 (913)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHH---------HHHHHhccccCCCCc----hH
Confidence            55555667888888888877665  233332 222232333333322211         111111111111110    01


Q ss_pred             eEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684          345 WRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG  406 (593)
Q Consensus       345 ~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~  406 (593)
                      |.   .+..-..+-+..-.|...++    -.|.+...|...|..=.+.|..+.|..+.-+.+..++
T Consensus       722 Wl---lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp  784 (913)
T KOG0495|consen  722 WL---LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP  784 (913)
T ss_pred             HH---HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            10   01111111223334444444    4577888999999999999999999998888887654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.00  E-value=0.0095  Score=47.33  Aligned_cols=80  Identities=14%  Similarity=0.137  Sum_probs=45.4

Q ss_pred             ccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVD-PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      |+++.|+.+|+++.+.... ++...+-.+..+|.+.|++++|.+++++ .+.+. .+....-.+..+|.+.|+.++|.++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            5677777777777665421 2333444467777777777777777766 22111 1112222345666677777777777


Q ss_pred             HHH
Q 007684          248 DAH  250 (593)
Q Consensus       248 ~~~  250 (593)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            664

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.97  E-value=0.41  Score=51.91  Aligned_cols=155  Identities=10%  Similarity=0.041  Sum_probs=104.9

Q ss_pred             CCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------
Q 007684          133 NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE--------  204 (593)
Q Consensus       133 ~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g--------  204 (593)
                      .+.+.|...|...+.+......           ...+...+|.++|++..+.. +-+...|..+..++....        
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~-----------~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~  398 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNS-----------GDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEK  398 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHH
Confidence            3456788999998885433210           01246889999999998865 333445555544443321        


Q ss_pred             ChHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007684          205 DPEMAFDLVKQMKSF-GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL  283 (593)
Q Consensus       205 ~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l  283 (593)
                      +++.+.+..++.... ....+...|..+...+...|++++|...+++..+.+  |+...|..+..++...|+.++|.+.+
T Consensus       399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            233344444443332 122344678877666777899999999999998766  78888999999999999999999999


Q ss_pred             HHHHHccCCCCHHHHHHHHH
Q 007684          284 HRLRTLVRQVSESTFKIIED  303 (593)
Q Consensus       284 ~~m~~~~~~~~~~t~~~l~~  303 (593)
                      .+...  ..|...||-...+
T Consensus       477 ~~A~~--L~P~~pt~~~~~~  494 (517)
T PRK10153        477 STAFN--LRPGENTLYWIEN  494 (517)
T ss_pred             HHHHh--cCCCCchHHHHHh
Confidence            98865  5676667654444

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.93  E-value=1.1  Score=43.69  Aligned_cols=165  Identities=11%  Similarity=0.028  Sum_probs=105.8

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      +..+.+..-...-+.|+.++|.+-|....+-|---....||.-|..|.+.                 +...|++...++.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~-----------------qyasALk~iSEIi  205 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSR-----------------QYASALKHISEII  205 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh-----------------hHHHHHHHHHHHH
Confidence            34445555556678999999999999988775444567899999999885                 8899999999988


Q ss_pred             hCCCC-------------CCHH--------HHHHHHHH-------HHhcCChHHHHHHHHHHHh-CCCCCCcccHHHHHH
Q 007684          183 TDKVD-------------PNEA--------TFTSVARL-------AVAKEDPEMAFDLVKQMKS-FGIPPKLRSYGPALF  233 (593)
Q Consensus       183 ~~g~~-------------p~~~--------ty~~li~~-------~~~~g~~~~A~~l~~~m~~-~g~~p~~~ty~~li~  233 (593)
                      ++|++             ||..        .-+.++.+       +.+.|+.+.|.+-+-.|-- ..-..|.+|...+.-
T Consensus       206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al  285 (459)
T KOG4340|consen  206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL  285 (459)
T ss_pred             HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence            87753             2221        12333333       4567888888888888742 112234455443322


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       234 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      .= -.+++-+..+=+.-+.+.+-- -..||..++-.||++.-++-|-.++.+-
T Consensus       286 ~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  286 MN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             hc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence            21 133444445545555543322 2356888888888888888887766543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.92  E-value=0.44  Score=56.01  Aligned_cols=204  Identities=10%  Similarity=0.025  Sum_probs=114.3

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC--C-C
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP-EGVLRHKLDMCSKRGDVFEALRLYDDARSN----GIT--L-S  138 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~  138 (593)
                      +.+...+...|++++|...+.+.+. ..+ ..+.... ...+..+...+...|++++|...+++..+.    |..  + .
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~-~~~-~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQ-MAR-QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH-HHh-hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            4555566778888888888766552 111 1111111 123555666777889999988888776542    221  1 1


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCChHHHHHHHH
Q 007684          139 QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD--KVDP--NEATFTSVARLAVAKEDPEMAFDLVK  214 (593)
Q Consensus       139 ~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~--g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~  214 (593)
                      ...+..+-..+...                |++++|.+.+++....  ...+  ...++..+...+...|+.+.|.+.++
T Consensus       573 ~~~~~~la~~~~~~----------------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~  636 (903)
T PRK04841        573 EFLLRIRAQLLWEW----------------ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN  636 (903)
T ss_pred             HHHHHHHHHHHHHh----------------cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            12222222223332                5888888888876542  1112  23345556667778899999988888


Q ss_pred             HHHhCCCC-CCcccH-----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 007684          215 QMKSFGIP-PKLRSY-----GPALFGFCKLGNTDKAYEVDAHMGESGVVPEE---PELSALLKLSVDAKKVDKVYEILHR  285 (593)
Q Consensus       215 ~m~~~g~~-p~~~ty-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~Ll~~~~~~g~~~~a~~~l~~  285 (593)
                      +.....-. .....+     ...+..+...|+.+.|.+++............   ..+..+..++...|+.++|...+.+
T Consensus       637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~  716 (903)
T PRK04841        637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE  716 (903)
T ss_pred             HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            87542100 000111     11224445678888888887765532211111   1134566667778888888887777


Q ss_pred             HHH
Q 007684          286 LRT  288 (593)
Q Consensus       286 m~~  288 (593)
                      ..+
T Consensus       717 al~  719 (903)
T PRK04841        717 LNE  719 (903)
T ss_pred             HHH
Confidence            755

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=95.92  E-value=0.28  Score=55.87  Aligned_cols=219  Identities=11%  Similarity=0.042  Sum_probs=128.3

Q ss_pred             cCCccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 007684           58 NRFSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGI  135 (593)
Q Consensus        58 ~g~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  135 (593)
                      ...+|+-..  ..|+..|-..+++++|..+....+       ...+.....|-.+...+.+.++...|..+  .+...  
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l-------~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--   92 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHL-------KEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--   92 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--
Confidence            345555555  788888888888888888774333       22222233344444467777777776666  22222  


Q ss_pred             CCCHHHHHHHHHHHHccCCCCCCC----CCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007684          136 TLSQHHYNVLLYVCSCKCGSESSE----NGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD  211 (593)
Q Consensus       136 ~p~~~ty~~ll~~~~~~~~~~~~~----~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~  211 (593)
                      .+...-|+..-..|...++.....    .....|-+.|+.++|.++++++.+.. +-|..+.|.+...|+.. ++++|.+
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~  170 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT  170 (906)
T ss_pred             cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence            111111111111111110000000    00012223479999999999999988 67888999999999999 9999999


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC-------------------CCCCCHHHHHHHHHHHHh
Q 007684          212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES-------------------GVVPEEPELSALLKLSVD  272 (593)
Q Consensus       212 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-------------------g~~p~~~t~~~Ll~~~~~  272 (593)
                      ++.+....               |....++.++.+++.++...                   |..--..++--|-..|..
T Consensus       171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~  235 (906)
T PRK14720        171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA  235 (906)
T ss_pred             HHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence            99988764               33344444444444444432                   333334455556677888


Q ss_pred             cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684          273 AKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF  305 (593)
Q Consensus       273 ~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~  305 (593)
                      ..+++++..+|+.+.+..-. +.....-|+..|
T Consensus       236 ~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y  267 (906)
T PRK14720        236 LEDWDEVIYILKKILEHDNK-NNKAREELIRFY  267 (906)
T ss_pred             hhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHH
Confidence            88999999999999874333 222333444444

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.12  Score=54.33  Aligned_cols=100  Identities=20%  Similarity=0.180  Sum_probs=81.0

Q ss_pred             ccHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChh
Q 007684          169 LGLKRGFEIFQQMITD----K--VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD  242 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~----g--~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~  242 (593)
                      +.+.+|...|+.-++.    +  ..--+.++++|..+|.+.+..++|+..+++..... +-+..+|.++.-.|...|+++
T Consensus       428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld  506 (611)
T KOG1173|consen  428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLD  506 (611)
T ss_pred             hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChH
Confidence            4788999999876631    1  11245579999999999999999999999987642 246789999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007684          243 KAYEVDAHMGESGVVPEEPELSALLKLSV  271 (593)
Q Consensus       243 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~  271 (593)
                      .|.+.|.+.+  .+.|+..+-..++..+.
T Consensus       507 ~Aid~fhKaL--~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  507 KAIDHFHKAL--ALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence            9999999877  67799888887777553

>PLN02789 farnesyltranstransferase

Probab=95.84  E-value=0.68  Score=46.96  Aligned_cols=185  Identities=12%  Similarity=0.051  Sum_probs=121.3

Q ss_pred             ccccch--HHHHHHHhcCC-CcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCC
Q 007684           61 SADLTT--GLCTLAFSKKS-TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD--VFEALRLYDDARSNGI  135 (593)
Q Consensus        61 ~~~~~~--~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~  135 (593)
                      .|+..+  +.--..+...| .+++++..+.+++       ...+.+..+|+..--.+.+.|+  .++++.+++.+.+..-
T Consensus        67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i-------~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp  139 (320)
T PLN02789         67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVA-------EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA  139 (320)
T ss_pred             CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH-------HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc
Confidence            355554  33333344445 4677777776655       3344455556654444455554  3678999988887743


Q ss_pred             CCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCh----HH
Q 007684          136 TLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK---EDP----EM  208 (593)
Q Consensus       136 ~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~---g~~----~~  208 (593)
                      + |.++|+-.--++...                |+++++++.++++.+.+ +-|..+|+...-.+.+.   |..    +.
T Consensus       140 k-Ny~AW~~R~w~l~~l----------------~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~  201 (320)
T PLN02789        140 K-NYHAWSHRQWVLRTL----------------GGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS  201 (320)
T ss_pred             c-cHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence            2 677777766666665                58999999999999887 55677777776666554   222    46


Q ss_pred             HHHHHHHHHhCCCCCC-cccHHHHHHHHHhc----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684          209 AFDLVKQMKSFGIPPK-LRSYGPALFGFCKL----GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA  273 (593)
Q Consensus       209 A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~  273 (593)
                      +.+...++...  .|+ ...|+-+...+...    +...+|.+++.+....++ .+...+..|++.|+..
T Consensus       202 el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~  268 (320)
T PLN02789        202 ELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhh
Confidence            67777666653  355 67888888888773    344668888888765432 3566688899999863

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.77  E-value=0.76  Score=43.87  Aligned_cols=161  Identities=10%  Similarity=0.020  Sum_probs=121.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      |..++.+....|+.+.|...++++...  -|+..-...|=......               .|+.++|+++|+.+.+.. 
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa---------------~~~~~~A~e~y~~lL~dd-  116 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEA---------------TGNYKEAIEYYESLLEDD-  116 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHH---------------hhchhhHHHHHHHHhccC-
Confidence            888888889999999999999998877  35543333332233333               268999999999999988 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHH
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSA  265 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~  265 (593)
                      +-|.++|--=+...-..|+--+|++-+.+..+. +.-|...|.-+-..|...|++++|.--+++|.-.  .|.... +..
T Consensus       117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~r  193 (289)
T KOG3060|consen  117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQR  193 (289)
T ss_pred             cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHH
Confidence            677788877666677778877888887777664 5578999999999999999999999999999853  354444 556


Q ss_pred             HHHHHHhcC---CHHHHHHHHHHHHH
Q 007684          266 LLKLSVDAK---KVDKVYEILHRLRT  288 (593)
Q Consensus       266 Ll~~~~~~g---~~~~a~~~l~~m~~  288 (593)
                      +-+.+--.|   +.+-+.++|.+..+
T Consensus       194 lae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  194 LAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            666554444   56667777777766

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=95.74  E-value=0.34  Score=40.62  Aligned_cols=49  Identities=10%  Similarity=0.034  Sum_probs=23.3

Q ss_pred             cHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          170 GLKRGFEIFQQMITDKV--DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      ++++|...|+.+.....  +....++..+..++.+.|+.++|.+.++++.+
T Consensus        54 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  104 (119)
T TIGR02795        54 KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK  104 (119)
T ss_pred             cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            55555555555543221  11123344444555555555555555555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=95.70  E-value=0.14  Score=55.41  Aligned_cols=161  Identities=14%  Similarity=0.082  Sum_probs=109.4

Q ss_pred             CCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684          101 ESPEGV-LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ  179 (593)
Q Consensus       101 ~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~  179 (593)
                      .+|... -..+...+.+.|-..+|..+|+++...         --+|..|...                |+..+|.++..
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erlemw---------~~vi~CY~~l----------------g~~~kaeei~~  448 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEMW---------DPVILCYLLL----------------GQHGKAEEINR  448 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHH---------HHHHHHHHHh----------------cccchHHHHHH
Confidence            344443 556677788899999999999976543         3345555554                47778888888


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC---------------------C-CCcccHHHHH
Q 007684          180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF-----GI---------------------P-PKLRSYGPAL  232 (593)
Q Consensus       180 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-----g~---------------------~-p~~~ty~~li  232 (593)
                      +-.+  -+||..-|..+.+..-...-+++|+++.+.....     |.                     . .-..+|=.+-
T Consensus       449 q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G  526 (777)
T KOG1128|consen  449 QELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLG  526 (777)
T ss_pred             HHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhcc
Confidence            7776  2788888888887776666677777777654221     00                     0 1123444445


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 007684          233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLV  290 (593)
Q Consensus       233 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~  290 (593)
                      .++.+.+++..|.+.|..-.  -..||-.+ ||+|-.+|.+.|.-.+|...+.+..+..
T Consensus       527 ~~ALqlek~q~av~aF~rcv--tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  527 CAALQLEKEQAAVKAFHRCV--TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HHHHHHhhhHHHHHHHHHHh--hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            55556777777777777665  34466555 8888888888888888888888876643

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.69  E-value=0.23  Score=45.21  Aligned_cols=115  Identities=11%  Similarity=0.003  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHH
Q 007684          171 LKRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       171 ~~~a~~l~~~M~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      ...+.+.+..+. ..+..--...|..+...+...|++++|...|++.......|.  ..+|..+-..|...|+.++|.+.
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344444455553 333223345677888888889999999999999976432221  34788899999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 007684          248 DAHMGESGVVPEEPELSALLKLSV-------DAKKVDKVYEILHRL  286 (593)
Q Consensus       248 ~~~m~~~g~~p~~~t~~~Ll~~~~-------~~g~~~~a~~~l~~m  286 (593)
                      ++...... +....++..+...+.       ..|+.+.|...+++.
T Consensus        95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033         95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            99988642 122344666666666       777877666655544

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.66  E-value=0.14  Score=44.08  Aligned_cols=53  Identities=13%  Similarity=0.048  Sum_probs=37.9

Q ss_pred             CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 007684          219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSALLKLSV  271 (593)
Q Consensus       219 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~  271 (593)
                      ..+.|+.++-.+++.+|+..|++..|+++.+...+ -++..+...|..|++-+.
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            34567777777788888888888888887777653 567767777777777543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=95.50  E-value=0.34  Score=50.15  Aligned_cols=101  Identities=12%  Similarity=0.011  Sum_probs=78.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCC
Q 007684          110 KLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP  188 (593)
Q Consensus       110 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p  188 (593)
                      ....+...|++++|+++|+++.+.  .|+ ...|..+-.+|...                |++++|+..+++..... +.
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~----------------g~~~eAl~~~~~Al~l~-P~   68 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKL----------------GNFTEAVADANKAIELD-PS   68 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-cC
Confidence            345677889999999999999987  343 44454444466664                69999999999998876 45


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHH
Q 007684          189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA  231 (593)
Q Consensus       189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l  231 (593)
                      +...|..+..+|...|++++|...|++..+  +.|+......+
T Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~  109 (356)
T PLN03088         69 LAKAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKL  109 (356)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence            777899999999999999999999999987  44665444433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=95.44  E-value=0.64  Score=42.48  Aligned_cols=85  Identities=11%  Similarity=0.084  Sum_probs=44.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLS--QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      +..+...+...|++++|...|++..+.+..+.  ...+..+-.++...                |+.++|.+.+++....
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----------------g~~~~A~~~~~~al~~  101 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN----------------GEHDKALEYYHQALEL  101 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHh
Confidence            55555566666777777777776665432221  12333333344443                4666666666666554


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHH
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEM  208 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~  208 (593)
                      . +-+...+..+...+...|+...
T Consensus       102 ~-p~~~~~~~~lg~~~~~~g~~~~  124 (172)
T PRK02603        102 N-PKQPSALNNIAVIYHKRGEKAE  124 (172)
T ss_pred             C-cccHHHHHHHHHHHHHcCChHh
Confidence            3 2234455555555555555433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.40  E-value=0.63  Score=50.52  Aligned_cols=151  Identities=9%  Similarity=-0.007  Sum_probs=100.8

Q ss_pred             cCCCCHHHHHHHHHHHHc--C---CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCCCCCCCCCCcccccccHH
Q 007684           99 RRESPEGVLRHKLDMCSK--R---GDVFEALRLYDDARSNGITLSQ-HHYNVLLYVCSCKCGSESSENGDRENDSNLGLK  172 (593)
Q Consensus        99 ~~~~~~~~~~~li~~~~~--~---g~~~~A~~l~~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~  172 (593)
                      ....+...|...+.+...  .   ++...|.++|++..+.  .|+- ..|..+..++......       .. ....++.
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~-------~~-~~~~~l~  401 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQ-------QP-LDEKQLA  401 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhc-------CC-ccHHHHH
Confidence            334455668888877443  2   3478999999999987  5664 3333332222221100       00 1112455


Q ss_pred             HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684          173 RGFEIFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       173 ~a~~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m  251 (593)
                      .+.+..++.... ....+..+|.++.-.+...|++++|...+++....+  |+...|..+...+...|+.++|.+.+++.
T Consensus       402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            566665554442 234455778888777778899999999999999854  78889999999999999999999999987


Q ss_pred             HhCCCCCCHHHH
Q 007684          252 GESGVVPEEPEL  263 (593)
Q Consensus       252 ~~~g~~p~~~t~  263 (593)
                      ..  +.|...||
T Consensus       480 ~~--L~P~~pt~  489 (517)
T PRK10153        480 FN--LRPGENTL  489 (517)
T ss_pred             Hh--cCCCCchH
Confidence            74  33555554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.99  Score=46.00  Aligned_cols=75  Identities=9%  Similarity=0.041  Sum_probs=52.7

Q ss_pred             HHhhcCCccccch-HHHHHHHhcCCCccc--CCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007684           54 DIKQNRFSADLTT-GLCTLAFSKKSTVNE--SSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA  130 (593)
Q Consensus        54 ~m~~~g~~~~~~~-~~li~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  130 (593)
                      .|-...++|...+ ..-|.++++.-..+.  |..++     .....+.....+......+-..+...|+.++|...|+..
T Consensus       184 ~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~-----l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~  258 (564)
T KOG1174|consen  184 VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTF-----LMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSST  258 (564)
T ss_pred             hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHH-----HHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHH
Confidence            4445556666666 777777776554444  44444     333344556667777999999999999999999999988


Q ss_pred             HHC
Q 007684          131 RSN  133 (593)
Q Consensus       131 ~~~  133 (593)
                      +..
T Consensus       259 ~~~  261 (564)
T KOG1174|consen  259 LCA  261 (564)
T ss_pred             hhC
Confidence            766

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.37  E-value=0.16  Score=49.53  Aligned_cols=94  Identities=17%  Similarity=0.199  Sum_probs=71.4

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      +++++|+..|.+..+.. +-|.+-|..=..+|++.|.++.|++=-+....  +-|. .++|..|-.+|...|++++|.+.
T Consensus        95 ~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~a  171 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEA  171 (304)
T ss_pred             hhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            58888888888887765 55667778888888888888888877776665  3355 57888888888888888888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHH
Q 007684          248 DAHMGESGVVPEEPELSALL  267 (593)
Q Consensus       248 ~~~m~~~g~~p~~~t~~~Ll  267 (593)
                      |++.+  .+.|+-.+|-.=|
T Consensus       172 ykKaL--eldP~Ne~~K~nL  189 (304)
T KOG0553|consen  172 YKKAL--ELDPDNESYKSNL  189 (304)
T ss_pred             HHhhh--ccCCCcHHHHHHH
Confidence            88776  4567777664433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.36  E-value=0.026  Score=44.74  Aligned_cols=80  Identities=13%  Similarity=0.101  Sum_probs=57.6

Q ss_pred             cCChHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 007684          203 KEDPEMAFDLVKQMKSFGI-PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVY  280 (593)
Q Consensus       203 ~g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~  280 (593)
                      .|+++.|..+++++.+..- .|+...+-.+..+|.+.|+.++|.++++. .  ...++. ...-.+..++.+.|++++|.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            5889999999999987432 12333444478999999999999999988 3  222333 33334577888999999999


Q ss_pred             HHHHH
Q 007684          281 EILHR  285 (593)
Q Consensus       281 ~~l~~  285 (593)
                      ++|++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99876

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=95.31  E-value=0.59  Score=50.72  Aligned_cols=79  Identities=11%  Similarity=0.159  Sum_probs=60.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007684          197 ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV  276 (593)
Q Consensus       197 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~  276 (593)
                      |.+......|.+|+.+++.+...+.  ...-|.-+..-|+..|+++.|+++|.+-   +      .++--|..|.++|++
T Consensus       739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccH
Confidence            4455667888889999888877543  3345788888899999999999998764   2      256678889999999


Q ss_pred             HHHHHHHHHH
Q 007684          277 DKVYEILHRL  286 (593)
Q Consensus       277 ~~a~~~l~~m  286 (593)
                      +.|.++-.+.
T Consensus       808 ~da~kla~e~  817 (1636)
T KOG3616|consen  808 EDAFKLAEEC  817 (1636)
T ss_pred             HHHHHHHHHh
Confidence            9888776554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.28  E-value=0.62  Score=41.13  Aligned_cols=73  Identities=12%  Similarity=0.084  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----ccCCCCHHHHHHH
Q 007684          228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT-----LVRQVSESTFKII  301 (593)
Q Consensus       228 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~-----~~~~~~~~t~~~l  301 (593)
                      ...++..+...|+.++|.++.+.+.... +.++..|..+|.+|...|+...|.+.|+++++     .|+.|++.|-...
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~  142 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY  142 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence            3445666677999999999999998644 24778899999999999999999999988743     6888988876544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.27  E-value=0.15  Score=49.09  Aligned_cols=89  Identities=21%  Similarity=0.206  Sum_probs=72.7

Q ss_pred             CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC----------------hhHHH
Q 007684          187 DPNEATFTSVARLAVAK-----EDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN----------------TDKAY  245 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~----------------~~~A~  245 (593)
                      ..|-.+|-+.+..+...     +.+|-....++.|++.|+.-|+.+|+.||+.+-+..-                -+-+.
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            56777888888777653     6678888889999999999999999999998866432                24478


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007684          246 EVDAHMGESGVVPEEPELSALLKLSVDAKK  275 (593)
Q Consensus       246 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~  275 (593)
                      +++++|+.+|+.||-.+-..|++++.+.+.
T Consensus       144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            899999999999999999999999988774

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.26  E-value=0.041  Score=41.46  Aligned_cols=50  Identities=10%  Similarity=0.149  Sum_probs=31.6

Q ss_pred             cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      .|++++|+++|+++.... +-+......+..+|.+.|++++|.++++++..
T Consensus         4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            356777777777766554 33555566666777777777777777766655

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.23  E-value=0.61  Score=42.40  Aligned_cols=94  Identities=15%  Similarity=0.075  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS--QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      ..+..+...+...|++++|+..|++.......+.  ..+|..+-.++...                |+.++|++.+++..
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~----------------g~~~eA~~~~~~Al   99 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN----------------GEHTKALEYYFQAL   99 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHH
Confidence            3477778888889999999999999876632221  23555554456654                69999999999988


Q ss_pred             hCCCCCCHHHHHHHHHHHH-------hcCChHHHHHHHHH
Q 007684          183 TDKVDPNEATFTSVARLAV-------AKEDPEMAFDLVKQ  215 (593)
Q Consensus       183 ~~g~~p~~~ty~~li~~~~-------~~g~~~~A~~l~~~  215 (593)
                      ... +....++..+...+.       ..|+++.|...+++
T Consensus       100 ~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        100 ERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            653 334456666666666       56666655544443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.23  E-value=1.4  Score=51.42  Aligned_cols=170  Identities=13%  Similarity=0.029  Sum_probs=128.4

Q ss_pred             hcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHH
Q 007684           98 ARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE  176 (593)
Q Consensus        98 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~  176 (593)
                      .....+-.+|..|...|.+.+..++|-++++.|.+. |  -....|...+....+.+                .-+.|.+
T Consensus      1524 cqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~n----------------e~~aa~~ 1585 (1710)
T KOG1070|consen 1524 CQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQN----------------EAEAARE 1585 (1710)
T ss_pred             HHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhccc----------------HHHHHHH
Confidence            345666777999999999999999999999999866 4  35567777777555543                6788899


Q ss_pred             HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          177 IFQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       177 l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      ++.+..+.=.+- -....+-.+..-.+.|+.+.+..+|+.....-  |. ...|+..|+.=.++|+.+.+..+|++....
T Consensus      1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            998877643111 12234455566678999999999999988632  43 678999999999999999999999999998


Q ss_pred             CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684          255 GVVPEEP--ELSALLKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       255 g~~p~~~--t~~~Ll~~~~~~g~~~~a~~~l~~m~  287 (593)
                      ++.|--.  .|...+..=-+.|+-+.++.+=.+..
T Consensus      1664 ~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1664 KLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred             CCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence            8877543  36777776666777666655544443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.21  E-value=0.68  Score=49.07  Aligned_cols=143  Identities=12%  Similarity=0.057  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684          120 VFEALRLYDDAR-SNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVAR  198 (593)
Q Consensus       120 ~~~A~~l~~~m~-~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~  198 (593)
                      +....++|-++. +.+.++|...+..|=-+|--.                |.+++|++.|+...... +-|...||-|-.
T Consensus       410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls----------------~efdraiDcf~~AL~v~-Pnd~~lWNRLGA  472 (579)
T KOG1125|consen  410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS----------------GEFDRAVDCFEAALQVK-PNDYLLWNRLGA  472 (579)
T ss_pred             HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc----------------hHHHHHHHHHHHHHhcC-CchHHHHHHhhH
Confidence            445555555554 556445555555554444443                48999999999988876 567788999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh---CC------CCCCHHHHHHHHH
Q 007684          199 LAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE---SG------VVPEEPELSALLK  268 (593)
Q Consensus       199 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~---~g------~~p~~~t~~~Ll~  268 (593)
                      .++...+-++|...|.+.++  +.|. +++.-.|.-.|...|.+++|.+.|-..+.   .+      ..++...|.+|=.
T Consensus       473 tLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~  550 (579)
T KOG1125|consen  473 TLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRL  550 (579)
T ss_pred             HhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHH
Confidence            99999999999999999987  6788 56655688889999999999887766542   21      1234456776666


Q ss_pred             HHHhcCCHHHHHH
Q 007684          269 LSVDAKKVDKVYE  281 (593)
Q Consensus       269 ~~~~~g~~~~a~~  281 (593)
                      ++.-.++.|-+.+
T Consensus       551 als~~~~~D~l~~  563 (579)
T KOG1125|consen  551 ALSAMNRSDLLQE  563 (579)
T ss_pred             HHHHcCCchHHHH
Confidence            6666666654443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.17  E-value=3.2  Score=42.44  Aligned_cols=82  Identities=13%  Similarity=0.059  Sum_probs=43.8

Q ss_pred             CCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHH-HH
Q 007684          117 RGDVFEALRLYDDARSNG-ITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT-FT  194 (593)
Q Consensus       117 ~g~~~~A~~l~~~m~~~g-~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t-y~  194 (593)
                      .++...|..++-.+.... ++-|++....+-.++...                |+.++|+..|++....+  |+..+ .-
T Consensus       209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~----------------Gdn~~a~~~Fe~~~~~d--py~i~~MD  270 (564)
T KOG1174|consen  209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN----------------GDYFQAEDIFSSTLCAN--PDNVEAMD  270 (564)
T ss_pred             hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh----------------cCchHHHHHHHHHhhCC--hhhhhhHH
Confidence            355555555555444433 444666666666666665                58888888888776433  32221 11


Q ss_pred             HHHHHHHhcCChHHHHHHHHHH
Q 007684          195 SVARLAVAKEDPEMAFDLVKQM  216 (593)
Q Consensus       195 ~li~~~~~~g~~~~A~~l~~~m  216 (593)
                      ...-.+...|+.+....+...+
T Consensus       271 ~Ya~LL~~eg~~e~~~~L~~~L  292 (564)
T KOG1174|consen  271 LYAVLLGQEGGCEQDSALMDYL  292 (564)
T ss_pred             HHHHHHHhccCHhhHHHHHHHH
Confidence            1122234455555544444444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.11  E-value=0.37  Score=42.88  Aligned_cols=83  Identities=10%  Similarity=-0.072  Sum_probs=49.1

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|..+|+-+..-. +-+..-|-.|.-.+-..|++++|...|........ -|.+.|=.+-.++...|+.+.|.+-|
T Consensus        49 G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF  126 (157)
T PRK15363         49 KEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKAL  126 (157)
T ss_pred             CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHH
Confidence            46666666666665543 23344455555556666666666666666665432 23455555666666666666666666


Q ss_pred             HHHHh
Q 007684          249 AHMGE  253 (593)
Q Consensus       249 ~~m~~  253 (593)
                      +....
T Consensus       127 ~~Ai~  131 (157)
T PRK15363        127 KAVVR  131 (157)
T ss_pred             HHHHH
Confidence            65543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=95.07  E-value=0.16  Score=54.86  Aligned_cols=140  Identities=11%  Similarity=0.086  Sum_probs=77.1

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+.+-|+..|.++.|+++|.               ....++-.|.+|.++|++..|.++-++....  ......|-+--
T Consensus       769 ~~iadhyan~~dfe~ae~lf~---------------e~~~~~dai~my~k~~kw~da~kla~e~~~~--e~t~~~yiaka  831 (1636)
T KOG3616|consen  769 GEIADHYANKGDFEIAEELFT---------------EADLFKDAIDMYGKAGKWEDAFKLAEECHGP--EATISLYIAKA  831 (1636)
T ss_pred             hHHHHHhccchhHHHHHHHHH---------------hcchhHHHHHHHhccccHHHHHHHHHHhcCc--hhHHHHHHHhH
Confidence            677778888888888888771               1234677788888888888888876654322  21222222211


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR  226 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  226 (593)
                      .-.-                ++|++.+|.++|-...    .|+.     .|..|-+.|..|..+++.++-....+   ..
T Consensus       832 edld----------------ehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~d  883 (1636)
T KOG3616|consen  832 EDLD----------------EHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HD  883 (1636)
T ss_pred             HhHH----------------hhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hH
Confidence            1111                1356666666553332    3443     34566666666666666654321101   12


Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHH
Q 007684          227 SYGPALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       227 ty~~li~~~~~~g~~~~A~~l~~~m  251 (593)
                      |--.+..-|-..|++..|++-|-+.
T Consensus       884 t~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  884 THKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             HHHHHHHHHHhccChhHHHHHHHhh
Confidence            3344455555566666666555443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=94.99  E-value=0.78  Score=40.83  Aligned_cols=95  Identities=8%  Similarity=-0.081  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL  269 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~  269 (593)
                      ...-.+...+...|++++|.++|+.+....  |. ..-|-.|-.++-..|++++|.+.|........ -|...+-.+-.+
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c  112 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence            344455666778999999999999998743  54 34455577888889999999999999886663 355668888999


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 007684          270 SVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       270 ~~~~g~~~~a~~~l~~m~~  288 (593)
                      +...|+.+.|.+.|+...+
T Consensus       113 ~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        113 YLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            9999999999999988766

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.98  E-value=1.2  Score=38.92  Aligned_cols=127  Identities=17%  Similarity=0.163  Sum_probs=87.0

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      ...+|..+.+.+....+..+++.+...+. .+...+|.++.+|++.                 +..+.++.+..      
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~-----------------~~~~ll~~l~~------   65 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY-----------------DPQKEIERLDN------   65 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH-----------------CHHHHHHHHHh------
Confidence            35677777778889999999998887763 6777888888888875                 44555555553      


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL-GNTDKAYEVDAHMGESGVVPEEPELSA  265 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~  265 (593)
                      ..+......+++.|-+.+.++++.-++.++..         |..++..+... ++.+.|.+...+-      -+...|..
T Consensus        66 ~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~  130 (140)
T smart00299       66 KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAE  130 (140)
T ss_pred             ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHH
Confidence            12334455588888888888888888876633         33355555555 7788888877762      24556777


Q ss_pred             HHHHHHh
Q 007684          266 LLKLSVD  272 (593)
Q Consensus       266 Ll~~~~~  272 (593)
                      ++..+..
T Consensus       131 ~~~~~l~  137 (140)
T smart00299      131 VLKALLD  137 (140)
T ss_pred             HHHHHHc
Confidence            7766643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=94.94  E-value=4.5  Score=40.44  Aligned_cols=381  Identities=10%  Similarity=0.053  Sum_probs=202.5

Q ss_pred             HHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007684           68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY  147 (593)
Q Consensus        68 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~  147 (593)
                      -+=..+...|++..|+.-|....       ++.+..-.++-.--..|...|+-..|+.=+....+.  +||-..-  -|.
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAv-------e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A--RiQ  111 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAV-------EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA--RIQ  111 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHH-------cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH--HHH
Confidence            34455666777777777775444       333333333333344566666666666666665555  5554321  111


Q ss_pred             HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCC--CHHHHH------------HHHHHHHhcCChHHHHHHH
Q 007684          148 VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP--NEATFT------------SVARLAVAKEDPEMAFDLV  213 (593)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~------------~li~~~~~~g~~~~A~~l~  213 (593)
                          .         -.-..|.|.+++|..=|+........-  +...++            ..+..+...|+...|+...
T Consensus       112 ----R---------g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i  178 (504)
T KOG0624|consen  112 ----R---------GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMI  178 (504)
T ss_pred             ----h---------chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence                0         011234589999999999988764211  111222            2234456678889999999


Q ss_pred             HHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC
Q 007684          214 KQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ  292 (593)
Q Consensus       214 ~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~  292 (593)
                      ..+.+  +.| |...|-.-..+|...|++.+|+.=++..-...-. +..++--+-..+-..|+.+.++...++..+  ..
T Consensus       179 ~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld  253 (504)
T KOG0624|consen  179 THLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK--LD  253 (504)
T ss_pred             HHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence            88887  334 4566777778899999999988766665432222 223333344555567877777766666544  33


Q ss_pred             CCHH----HHHHHHHHHhcchhhhh--ccccchh--hhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCccccc
Q 007684          293 VSES----TFKIIEDWFDSVDAAEI--GVLNWDV--SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNER  364 (593)
Q Consensus       293 ~~~~----t~~~l~~~~~~~~~~~~--~~~~~d~--~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~a  364 (593)
                      |+..    .|..+...-.+...++.  ....|-.  +.-.+.|+..-....       -...+...+-..+..-+..++|
T Consensus       254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~-------ir~~~~r~~c~C~~~d~~~~eA  326 (504)
T KOG0624|consen  254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM-------IRYNGFRVLCTCYREDEQFGEA  326 (504)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc-------eeeeeeheeeecccccCCHHHH
Confidence            4332    33333333322222221  1233433  233333332211000       0111111111122222334444


Q ss_pred             cc----ccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhh
Q 007684          365 LV----CIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQM  440 (593)
Q Consensus       365 l~----~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~  440 (593)
                      ++    +++++|.+..++..--.+|....++++|+.-|++..+-...-+.+-.               -++.+-+...+ 
T Consensus       327 iqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re---------------Gle~Akrlkkq-  390 (504)
T KOG0624|consen  327 IQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE---------------GLERAKRLKKQ-  390 (504)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH---------------HHHHHHHHHHH-
Confidence            43    45588999999999999999999999999999998874432222111               12222222222 


Q ss_pred             CCCCCce-EEEecCCCcCCCCCCCcchHHHHHHHHhCCcEEeCCCCCCCh-------HHHHHHHHhCCcEEEecchhhcc
Q 007684          441 SPSKRMP-LVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDD-------WYWLYATVNCKSLLVTNDEMRDH  512 (593)
Q Consensus       441 ~~~~~~~-lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~DD-------~~~lyaa~~~~~~~vs~D~~rdh  512 (593)
                        ++++. .=+|+.+|       +...+++.+..|+-+.-.--+|.++..       -|.=-||.+   =++|+-++|--
T Consensus       391 --s~kRDYYKILGVkR-------nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAK---EVLsd~EkRrq  458 (504)
T KOG0624|consen  391 --SGKRDYYKILGVKR-------NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAK---EVLSDPEKRRQ  458 (504)
T ss_pred             --hccchHHHHhhhcc-------cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHH---HhhcCHHHHhh
Confidence              22222 22233333       445567777776655444433443332       244445443   36788888854

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=94.93  E-value=0.82  Score=38.98  Aligned_cols=49  Identities=6%  Similarity=0.088  Sum_probs=21.3

Q ss_pred             ccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPN--EATFTSVARLAVAKEDPEMAFDLVKQMK  217 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~  217 (593)
                      |+.++|+.+|++....|+...  ...+-.+.+.+...|++++|..++++..
T Consensus        15 G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~   65 (120)
T PF12688_consen   15 GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL   65 (120)
T ss_pred             CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344444444444444443332  1233334444444444444444444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=94.93  E-value=0.072  Score=40.07  Aligned_cols=50  Identities=18%  Similarity=0.147  Sum_probs=24.9

Q ss_pred             hcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          202 AKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       202 ~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      +.|++++|.++|+++....  | +...+-.+..+|.+.|++++|.++++.+..
T Consensus         3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455555555555554421  3 233444455555555555555555555543

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=94.75  E-value=0.24  Score=49.49  Aligned_cols=212  Identities=12%  Similarity=0.107  Sum_probs=119.7

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCH--
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE-GVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLSQ--  139 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~--  139 (593)
                      .-....|...|++++|...|........+  .+..... ..|......|.+. ++++|...+++..+.    | .|+.  
T Consensus        39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~--~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA  114 (282)
T PF14938_consen   39 EKAANCFKLAKDWEKAAEAYEKAADCYEK--LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA  114 (282)
T ss_dssp             HHHHHHHHHTT-CHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence            44455677788888888887555422111  1111111 1255555555444 888888888876532    3 2221  


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHH
Q 007684          140 HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT----DKVDPN--EATFTSVARLAVAKEDPEMAFDLV  213 (593)
Q Consensus       140 ~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~----~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~  213 (593)
                      ..+..+-..|...               .|++++|++.|++..+    .| .+.  ..++..+...+++.|++++|.++|
T Consensus       115 ~~~~~lA~~ye~~---------------~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~  178 (282)
T PF14938_consen  115 KCLKELAEIYEEQ---------------LGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIY  178 (282)
T ss_dssp             HHHHHHHHHHCCT---------------T--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            1222233345443               1589999999998654    34 222  236778888999999999999999


Q ss_pred             HHHHhCCCCC-----Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhc--CCHHHHHH
Q 007684          214 KQMKSFGIPP-----KLR-SYGPALFGFCKLGNTDKAYEVDAHMGES--GVVPE--EPELSALLKLSVDA--KKVDKVYE  281 (593)
Q Consensus       214 ~~m~~~g~~p-----~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~Ll~~~~~~--g~~~~a~~  281 (593)
                      ++....-+..     +.. .|-..+-++...||...|.+.+++....  ++..+  -.....||.++-..  ..+..+..
T Consensus       179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~  258 (282)
T PF14938_consen  179 EEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA  258 (282)
T ss_dssp             HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9997643322     222 2334555667789999999999998743  34322  23366677777432  24555555


Q ss_pred             HHHHHHHccCCCCHHHHHHHH
Q 007684          282 ILHRLRTLVRQVSESTFKIIE  302 (593)
Q Consensus       282 ~l~~m~~~~~~~~~~t~~~l~  302 (593)
                      -|+.+.+    +++.--.+|+
T Consensus       259 ~~d~~~~----ld~w~~~~l~  275 (282)
T PF14938_consen  259 EYDSISR----LDNWKTKMLL  275 (282)
T ss_dssp             HHTTSS-------HHHHHHHH
T ss_pred             HHcccCc----cHHHHHHHHH
Confidence            5555433    5555444444

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.71  E-value=1.5  Score=46.69  Aligned_cols=113  Identities=15%  Similarity=0.176  Sum_probs=83.7

Q ss_pred             ccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH--HHHHHH--hcCChh
Q 007684          167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP--ALFGFC--KLGNTD  242 (593)
Q Consensus       167 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~--li~~~~--~~g~~~  242 (593)
                      ++|++++|...-+++...+ +-|...+.+=+-+..+.+++++|+.+.+.   .+.   ..+++.  +=.+||  +.+..|
T Consensus        24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrlnk~D   96 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRLNKLD   96 (652)
T ss_pred             cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHcccHH
Confidence            3579999999999999877 56667788878889999999999965543   221   123332  357777  688999


Q ss_pred             HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684          243 KAYEVDAHMGESGVVPEEP-ELSALLKLSVDAKKVDKVYEILHRLRTLVR  291 (593)
Q Consensus       243 ~A~~l~~~m~~~g~~p~~~-t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~  291 (593)
                      +|...++     |..++.. +...=...+-+.|++++|+.+|+++.++..
T Consensus        97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            9999988     4444443 444455667789999999999999977544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.59  E-value=0.16  Score=45.00  Aligned_cols=72  Identities=17%  Similarity=0.200  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCHHHH
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG-----ESGVVPEEPEL  263 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~  263 (593)
                      .+...++..+...|++++|.++.+.+....- -+...|..+|.+|...|+..+|.++|+++.     +.|+.|+..+-
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            4566778888899999999999999987442 457799999999999999999999999885     45899988763

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.47  E-value=0.76  Score=47.29  Aligned_cols=131  Identities=12%  Similarity=0.206  Sum_probs=64.9

Q ss_pred             cHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccH-HHHHHHHHhcCChhHHHHH
Q 007684          170 GLKRGFEIFQQMITDK-VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY-GPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~l  247 (593)
                      -++.|..+|-+..+.| +.++...++++|.-++ .|+...|.++|+-=... . ||...| +-.+.-+.+-++-+.|..+
T Consensus       412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y~~kyl~fLi~inde~naraL  488 (660)
T COG5107         412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLYKEKYLLFLIRINDEENARAL  488 (660)
T ss_pred             hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHHHHHHHHHHHHhCcHHHHHHH
Confidence            3555555555555555 4455555555555443 24455555555432221 1 343332 2234444455555555555


Q ss_pred             HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHh
Q 007684          248 DAHMGESGVVPE--EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFD  306 (593)
Q Consensus       248 ~~~m~~~g~~p~--~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~  306 (593)
                      |+.-.+. +.-+  -..|..+|+--..-|+...|+.+=++|.+  +.|.+.+..+...-|.
T Consensus       489 Fetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~  546 (660)
T COG5107         489 FETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence            5532210 1111  23455666655666666666666666655  4455555555555553

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.46  E-value=0.21  Score=48.17  Aligned_cols=87  Identities=16%  Similarity=0.121  Sum_probs=71.1

Q ss_pred             CCcccHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 007684          223 PKLRSYGPALFGFCK-----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK----------------KVDKVYE  281 (593)
Q Consensus       223 p~~~ty~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g----------------~~~~a~~  281 (593)
                      -|..+|-.++..|..     .+.++-....++.|.+-|+.-|..+|+.||+.+-+..                .-+-+..
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~  144 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK  144 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence            355677777777754     4677888888999999999999999999999886543                2355788


Q ss_pred             HHHHHHHccCCCCHHHHHHHHHHHhcch
Q 007684          282 ILHRLRTLVRQVSESTFKIIEDWFDSVD  309 (593)
Q Consensus       282 ~l~~m~~~~~~~~~~t~~~l~~~~~~~~  309 (593)
                      ++++|...|+.|+.++-.++++.|.+.+
T Consensus       145 vLeqME~hGVmPdkE~e~~lvn~FGr~~  172 (406)
T KOG3941|consen  145 VLEQMEWHGVMPDKEIEDILVNAFGRWN  172 (406)
T ss_pred             HHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence            9999999999999999999999996543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=94.45  E-value=1.9  Score=43.03  Aligned_cols=181  Identities=13%  Similarity=0.123  Sum_probs=115.7

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      |...-..|-..|++++|.+.|......    |-... ...|.....+|.+.                 ++++|.+.|++.
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-----------------~~~~Ai~~~~~A  100 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-----------------DPDEAIECYEKA  100 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-----------------CHHHHHHHHHHH
Confidence            888888999999999999999886533    21111 12233333355443                 788888888876


Q ss_pred             Hh----CCCCCCHH--HHHHHHHHHHhc-CChHHHHHHHHHHHh----CCCCCC--cccHHHHHHHHHhcCChhHHHHHH
Q 007684          182 IT----DKVDPNEA--TFTSVARLAVAK-EDPEMAFDLVKQMKS----FGIPPK--LRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       182 ~~----~g~~p~~~--ty~~li~~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      ..    .| .|+..  ++..+...|-.. |++++|.+.|++..+    .+ .+.  ...+..+...+.+.|++++|.++|
T Consensus       101 ~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~  178 (282)
T PF14938_consen  101 IEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIY  178 (282)
T ss_dssp             HHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            53    45 44443  677888888888 999999999999854    23 222  356777888999999999999999


Q ss_pred             HHHHhCCCC-----CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcc--CCCCH--HHHHHHHHHHh
Q 007684          249 AHMGESGVV-----PEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLV--RQVSE--STFKIIEDWFD  306 (593)
Q Consensus       249 ~~m~~~g~~-----p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~--~~~~~--~t~~~l~~~~~  306 (593)
                      ++....-..     .+... |-..+-++...|+.-.|.+.+++....-  ...+.  .....|+..|.
T Consensus       179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~  246 (282)
T PF14938_consen  179 EEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE  246 (282)
T ss_dssp             HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence            998754332     22322 2333445667899999999999987532  22222  23455566553

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.42  E-value=2  Score=41.12  Aligned_cols=188  Identities=12%  Similarity=0.031  Sum_probs=121.6

Q ss_pred             hHHhhcCCccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007684           53 TDIKQNRFSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA  130 (593)
Q Consensus        53 ~~m~~~g~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  130 (593)
                      .++...-..++..+  --++-+....|+.+.|...+.+..       ..++.+..+-..---.+-..|+.++|.++++.+
T Consensus        40 ~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~-------~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~l  112 (289)
T KOG3060|consen   40 NYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLR-------DRFPGSKRVGKLKAMLLEATGNYKEAIEYYESL  112 (289)
T ss_pred             HHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHH-------HhCCCChhHHHHHHHHHHHhhchhhHHHHHHHH
Confidence            34444446677777  455556667788888887774333       333444443222222234468899999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007684          131 RSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF  210 (593)
Q Consensus       131 ~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~  210 (593)
                      .+.. +.|.++|--=+......                |+-.+|++-+.+..+.- .-|...|.-+...|...|++++|.
T Consensus       113 L~dd-pt~~v~~KRKlAilka~----------------GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~  174 (289)
T KOG3060|consen  113 LEDD-PTDTVIRKRKLAILKAQ----------------GKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAA  174 (289)
T ss_pred             hccC-cchhHHHHHHHHHHHHc----------------CCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHH
Confidence            9886 44667776544433332                46668888887777654 679999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCccc-HHHHHHH---HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007684          211 DLVKQMKSFGIPPKLRS-YGPALFG---FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV  271 (593)
Q Consensus       211 ~l~~~m~~~g~~p~~~t-y~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~  271 (593)
                      -.+++|.-  +.|-... +..+-..   -+...+.+-|.+.|....+..    .....++...|.
T Consensus       175 fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~----~~~~ral~GI~l  233 (289)
T KOG3060|consen  175 FCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN----PKNLRALFGIYL  233 (289)
T ss_pred             HHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC----hHhHHHHHHHHH
Confidence            99999987  4465433 2333333   333446677888888876533    233444444443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.42  E-value=2.4  Score=47.44  Aligned_cols=134  Identities=10%  Similarity=0.023  Sum_probs=97.2

Q ss_pred             HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH
Q 007684          114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF  193 (593)
Q Consensus       114 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty  193 (593)
                      ....+++..|+...+.+.+.  .||. .|...+.++...+              .|+.++|..+++.....+.. |..|.
T Consensus        19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r--------------~gk~~ea~~~Le~~~~~~~~-D~~tL   80 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFR--------------LGKGDEALKLLEALYGLKGT-DDLTL   80 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHH--------------hcCchhHHHHHhhhccCCCC-chHHH
Confidence            34567888999888887776  4554 3555566555432              46888999999888877744 88899


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684          194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK----AYEVDAHMGESGVVPEEPELSALLKL  269 (593)
Q Consensus       194 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~Ll~~  269 (593)
                      .++-..|...++.|+|..+|+...+.  -|+...-..+..+|.+.+++.+    |+++++.     +.-+...|-++++.
T Consensus        81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Sl  153 (932)
T KOG2053|consen   81 QFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISL  153 (932)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHH
Confidence            99999999999999999999988763  3777777778888888887765    4555552     33344556666666


Q ss_pred             HHh
Q 007684          270 SVD  272 (593)
Q Consensus       270 ~~~  272 (593)
                      +..
T Consensus       154 ilq  156 (932)
T KOG2053|consen  154 ILQ  156 (932)
T ss_pred             HHH
Confidence            654

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.30  E-value=0.58  Score=46.83  Aligned_cols=130  Identities=17%  Similarity=0.224  Sum_probs=90.5

Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHhCCC---CCCcccHHHHHHHHHhcCC
Q 007684          170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVA--KE----DPEMAFDLVKQMKSFGI---PPKLRSYGPALFGFCKLGN  240 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~--~g----~~~~A~~l~~~m~~~g~---~p~~~ty~~li~~~~~~g~  240 (593)
                      .+++.+++++.|++.|..-+..+|-+..-....  ..    ....|..+++.|++...   .++...+..++..  ...+
T Consensus        77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence            577889999999999999988777664433333  22    25678999999997432   3455667766655  3333


Q ss_pred             ----hhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684          241 ----TDKAYEVDAHMGESGVVPEEPE--LSALLKLSVDAK--KVDKVYEILHRLRTLVRQVSESTFKII  301 (593)
Q Consensus       241 ----~~~A~~l~~~m~~~g~~p~~~t--~~~Ll~~~~~~g--~~~~a~~~l~~m~~~~~~~~~~t~~~l  301 (593)
                          .+.++..|+.+...|+..+...  .+.++..+-...  ...++.++++.+.+.++++....|..+
T Consensus       155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence                3567888999988898765543  444444433222  256889999999999999988877543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=94.16  E-value=10  Score=41.19  Aligned_cols=177  Identities=9%  Similarity=0.109  Sum_probs=93.3

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCccccc------ccHHHHHHHHHH
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN------LGLKRGFEIFQQ  180 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~------g~~~~a~~l~~~  180 (593)
                      +++|-+-|.+.|.++.|.++|++..+.  ...+.-|+.+...|++-........+-.+-.+.      -+++-.+.-|+.
T Consensus       251 w~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~  328 (835)
T KOG2047|consen  251 WCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES  328 (835)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence            788888888888888888888887766  446666777777777631000000000000000      112222222333


Q ss_pred             HHhCCC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc------ccHHHHHHHHHhcCChhH
Q 007684          181 MITDKV-----------DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL------RSYGPALFGFCKLGNTDK  243 (593)
Q Consensus       181 M~~~g~-----------~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~ty~~li~~~~~~g~~~~  243 (593)
                      +...+.           +-+..++..-+.  ...|+..+-...+.+..+. +.|..      ..|-.+...|-+.|+++.
T Consensus       329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~  405 (835)
T KOG2047|consen  329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD  405 (835)
T ss_pred             HHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence            222110           011112222111  2235566666677666542 33432      235555666667899999


Q ss_pred             HHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          244 AYEVDAHMGESGVVPE---EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       244 A~~l~~~m~~~g~~p~---~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      |..+|++......+--   ..+|..-...=.++.+++.|++++++...
T Consensus       406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~  453 (835)
T KOG2047|consen  406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH  453 (835)
T ss_pred             HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence            9999988876554321   22344444444556677777777766543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=94.04  E-value=2.1  Score=36.51  Aligned_cols=91  Identities=18%  Similarity=0.094  Sum_probs=68.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHH-HHHHHH
Q 007684          196 VARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE---EPEL-SALLKL  269 (593)
Q Consensus       196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~-~~Ll~~  269 (593)
                      +..++-..|+.++|..+|++....|+...  .+.+-.+-++|...|+.++|..++++....-  |+   .... ..+--+
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence            34567789999999999999999887554  3456667788999999999999999987532  33   2222 223346


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 007684          270 SVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       270 ~~~~g~~~~a~~~l~~m~~  288 (593)
                      +...|+.++|.+.+-....
T Consensus        85 L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            6788999999998877654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=93.95  E-value=0.13  Score=38.20  Aligned_cols=49  Identities=10%  Similarity=0.157  Sum_probs=26.8

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      |++++|.+.|++..+.. +-+...+..+..++...|++++|..+|+++.+
T Consensus        11 g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen   11 GDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             THHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45666666666655554 22444555555555566666666666655543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.84  E-value=0.45  Score=52.31  Aligned_cols=156  Identities=14%  Similarity=0.124  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHH--HHHH
Q 007684          103 PEGVLRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG--FEIF  178 (593)
Q Consensus       103 ~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a--~~l~  178 (593)
                      ++.+-.++++.  |...|+.+.|.+-++.+++.      ..|..|-+.|.+.+..+.+.      ++.|.++.|  .+-+
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAk------VClGhm~~aRgaRAl  792 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAK------VCLGHMKNARGARAL  792 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHH------HhhhhhhhhhhHHHH
Confidence            34445566654  77889999999998888765      78999999998875222211      111222221  2223


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684          179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP  258 (593)
Q Consensus       179 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  258 (593)
                      ++..+.|   + .+=.-+.-.....|.+++|..++.+.+...+         |=..|-..|.+++|+++-+.=.+--++ 
T Consensus       793 R~a~q~~---~-e~eakvAvLAieLgMlEeA~~lYr~ckR~DL---------lNKlyQs~g~w~eA~eiAE~~DRiHLr-  858 (1416)
T KOG3617|consen  793 RRAQQNG---E-EDEAKVAVLAIELGMLEEALILYRQCKRYDL---------LNKLYQSQGMWSEAFEIAETKDRIHLR-  858 (1416)
T ss_pred             HHHHhCC---c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHHH---------HHHHHHhcccHHHHHHHHhhccceehh-
Confidence            3333322   2 2222333345677888888888888876432         445566678888888776653322222 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          259 EEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       259 ~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                        .||-.-..-+...++.+.|++.|++.
T Consensus       859 --~Tyy~yA~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  859 --NTYYNYAKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             --hhHHHHHHHHHhhccHHHHHHHHHhc
Confidence              23333334444455666666666553

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.80  E-value=0.48  Score=45.32  Aligned_cols=180  Identities=13%  Similarity=0.096  Sum_probs=101.2

Q ss_pred             ccHHHHHHHHHHh--CCChhhHHhhcCCccccc----------h-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCC
Q 007684           35 HTYRSLLCWHMHS--FTKPITDIKQNRFSADLT----------T-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRE  101 (593)
Q Consensus        35 ~~~~~ll~~~~~~--~~~~~~~m~~~g~~~~~~----------~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  101 (593)
                      .-+++|...|.-.  +.+.+.+.... ..|..+          . +.++..+...|.+.-....+.++.      +...+
T Consensus       137 npqesLdRl~~L~~~V~~ii~~~e~~-~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi------~~~~e  209 (366)
T KOG2796|consen  137 NPQESLDRLHKLKTVVSKILANLEQG-LAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVI------KYYPE  209 (366)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHH------HhCCc
Confidence            4457777766633  44444333322 222221          1 344444444455544555553332      12223


Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684          102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      ..+.....|+..-.+.||++.|..+|+...+..-+.|..+++.+..--...           -++-..++..|...|.+.
T Consensus       210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~-----------i~lg~nn~a~a~r~~~~i  278 (366)
T KOG2796|consen  210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF-----------LHLGQNNFAEAHRFFTEI  278 (366)
T ss_pred             ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh-----------heecccchHHHHHHHhhc
Confidence            344457888888888899999999988777654455666666554311100           011123777788888777


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 007684          182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF  235 (593)
Q Consensus       182 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~  235 (593)
                      .... ..|....|+=.-...-.|+...|.+..+.|+.  ..|...+-++++--+
T Consensus       279 ~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~nL  329 (366)
T KOG2796|consen  279 LRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFNL  329 (366)
T ss_pred             cccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHHH
Confidence            6655 44555555554455556888888888888877  346665555554433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=93.75  E-value=0.33  Score=36.03  Aligned_cols=55  Identities=13%  Similarity=0.128  Sum_probs=30.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          232 LFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       232 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ...+.+.|++++|.+.|++..+..  |+ ...+..+..++...|++++|..+|+++.+
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344555666666666666665443  32 33355555555666666666666665543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=93.62  E-value=2.4  Score=49.81  Aligned_cols=207  Identities=12%  Similarity=0.034  Sum_probs=127.2

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCH--H
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP--EGVLRHKLDMCSKRGDVFEALRLYDDARSN--GITLSQ--H  140 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~--~  140 (593)
                      ..+...+...|++++|...+.+.+.. .........+  ...+..+...+...|++++|...+++....  ...+..  .
T Consensus       535 ~~la~~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~  613 (903)
T PRK04841        535 LQQSEILFAQGFLQAAYETQEKAFQL-IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ  613 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH-HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence            55566788899999999988776622 2211111112  122455556677789999999999887643  111221  2


Q ss_pred             HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC----CCCCCH-HHH-HHHHHHHHhcCChHHHHHHHH
Q 007684          141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD----KVDPNE-ATF-TSVARLAVAKEDPEMAFDLVK  214 (593)
Q Consensus       141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~----g~~p~~-~ty-~~li~~~~~~g~~~~A~~l~~  214 (593)
                      .+..+-.+....                |+.++|.+.+++....    +..... ... ...+..+...|+.+.|.+++.
T Consensus       614 ~~~~la~~~~~~----------------G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~  677 (903)
T PRK04841        614 CLAMLAKISLAR----------------GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLR  677 (903)
T ss_pred             HHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            222222233333                6899999999887542    111111 111 112344556899999999987


Q ss_pred             HHHhCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          215 QMKSFGIPPKL---RSYGPALFGFCKLGNTDKAYEVDAHMGE----SGVVPEE-PELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       215 ~m~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      ...........   ..+..+..++...|+.++|...+++...    .|..++. .++..+..++...|+.++|...+.+.
T Consensus       678 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A  757 (903)
T PRK04841        678 QAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA  757 (903)
T ss_pred             hcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            76542111110   1134566778899999999999998764    2433332 34666677888999999999999998


Q ss_pred             HHcc
Q 007684          287 RTLV  290 (593)
Q Consensus       287 ~~~~  290 (593)
                      .+..
T Consensus       758 l~la  761 (903)
T PRK04841        758 LKLA  761 (903)
T ss_pred             HHHh
Confidence            7743

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.51  E-value=1.2  Score=44.47  Aligned_cols=195  Identities=8%  Similarity=0.074  Sum_probs=120.8

Q ss_pred             HHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHH--HHHHHH-----HHcCCCHHHHHHHHHHHHHCCCC----
Q 007684           68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVL--RHKLDM-----CSKRGDVFEALRLYDDARSNGIT----  136 (593)
Q Consensus        68 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~li~~-----~~~~g~~~~A~~l~~~m~~~g~~----  136 (593)
                      .|+-.|.+.+++++|..+....          .+..+..|  ..+..+     ......+.-|...|.-.-+.+..    
T Consensus       290 NL~iYyL~q~dVqeA~~L~Kdl----------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI  359 (557)
T KOG3785|consen  290 NLIIYYLNQNDVQEAISLCKDL----------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI  359 (557)
T ss_pred             hheeeecccccHHHHHHHHhhc----------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence            3444788889999988877222          23333222  222221     11223455666777655555543    


Q ss_pred             CCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007684          137 LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM  216 (593)
Q Consensus       137 p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m  216 (593)
                      |...+..+-+-++-                   ++++++-.++..+.--..-|..-| ++..+.+..|...+|+++|-++
T Consensus       360 pGRQsmAs~fFL~~-------------------qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~i  419 (557)
T KOG3785|consen  360 PGRQSMASYFFLSF-------------------QFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRI  419 (557)
T ss_pred             cchHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhh
Confidence            33343333333332                   578888888888876655555554 4788999999999999999888


Q ss_pred             HhCCCCCCcccHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC
Q 007684          217 KSFGIPPKLRSYGPAL-FGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQVS  294 (593)
Q Consensus       217 ~~~g~~p~~~ty~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~  294 (593)
                      ....+ -|..+|-.++ .+|.+.+.++-|++++-.+...+   +..+ +..+.+.|-+.+.+=-|-+.|+.+..  ..|+
T Consensus       420 s~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~  493 (557)
T KOG3785|consen  420 SGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPT  493 (557)
T ss_pred             cChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCC
Confidence            76544 4456776555 78889999999999988875321   2223 33344566678877667777777754  3455


Q ss_pred             HHHH
Q 007684          295 ESTF  298 (593)
Q Consensus       295 ~~t~  298 (593)
                      ++.+
T Consensus       494 pEnW  497 (557)
T KOG3785|consen  494 PENW  497 (557)
T ss_pred             cccc
Confidence            5444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=93.36  E-value=5.2  Score=42.41  Aligned_cols=115  Identities=18%  Similarity=0.203  Sum_probs=92.5

Q ss_pred             cHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH-HhCCCCCCcccH-HHHHHHHHhcCChhHHHH
Q 007684          170 GLKRGFEIFQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSY-GPALFGFCKLGNTDKAYE  246 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m-~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~  246 (593)
                      -++.|..+|.+..+.+..+ ....++++|.-+|. ++.+-|+++|+-= +..   +|...| ..-++-+...++-..|..
T Consensus       381 GlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL~~lNdd~N~R~  456 (656)
T KOG1914|consen  381 GLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFLSHLNDDNNARA  456 (656)
T ss_pred             hHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHHHHhCcchhHHH
Confidence            5888999999999998888 77888889887775 7888999999864 333   444333 445677778888899999


Q ss_pred             HHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          247 VDAHMGESGVVPEE--PELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       247 l~~~m~~~g~~p~~--~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +|+..+..++.||.  ..|..+|+.=..-|+...+.++-+++..
T Consensus       457 LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  457 LFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             HHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            99999988777665  5599999999999999999998887755

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=93.34  E-value=0.16  Score=39.33  Aligned_cols=61  Identities=16%  Similarity=0.217  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCC-cccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSF----GI-PPK-LRSYGPALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m  251 (593)
                      .+|+.+...|...|++++|++.|++..+.    |- .|+ ..+++.+...|...|+.++|++.+++.
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45667777777777777777777766531    11 122 345566666666666666666666654

...

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.30  E-value=12  Score=39.18  Aligned_cols=121  Identities=10%  Similarity=0.092  Sum_probs=75.1

Q ss_pred             HHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007684           69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV  148 (593)
Q Consensus        69 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~  148 (593)
                      -+.+=.+..++..|..+++...       .-.+.-+..+---+.+=-.-|++..|.++|+...+.  .|+...|++.|+.
T Consensus       113 Yae~Emknk~vNhARNv~dRAv-------t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~f  183 (677)
T KOG1915|consen  113 YAEFEMKNKQVNHARNVWDRAV-------TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKF  183 (677)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHH-------HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence            3445556667777777775444       222223344555566666678999999999998887  8999999999985


Q ss_pred             HHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007684          149 CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM  216 (593)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m  216 (593)
                      =.+-+                .++.|..+|+...-.  .|+..+|---.+-=-+.|....|..+|+..
T Consensus       184 ElRyk----------------eieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA  233 (677)
T KOG1915|consen  184 ELRYK----------------EIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA  233 (677)
T ss_pred             HHHhh----------------HHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            55543                455666666655533  255555555544444455554444444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.24  E-value=11  Score=38.88  Aligned_cols=168  Identities=14%  Similarity=0.137  Sum_probs=102.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNG-I-TLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT  183 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~-~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~  183 (593)
                      .-.++-.|....+++...++++.|...- + .++.....-+.. +..+.+             +.|+.++|.+++..+..
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn-------------~~gdre~Al~il~~~l~  210 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN-------------KPGDREKALQILLPVLE  210 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc-------------cCCCHHHHHHHHHHHHh
Confidence            3344445999999999999999998762 1 111111111111 222211             24899999999999766


Q ss_pred             CCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-hh---HHHHHH--
Q 007684          184 DKVDPNEATFTSVARLAVA---------KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN-TD---KAYEVD--  248 (593)
Q Consensus       184 ~g~~p~~~ty~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~-~~---~A~~l~--  248 (593)
                      ..-.++..||..+.+.|-.         ....++|...|.+--+  +.|+..+==++...+...|. .+   +..++-  
T Consensus       211 ~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~  288 (374)
T PF13281_consen  211 SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVK  288 (374)
T ss_pred             ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHH
Confidence            6668899999999888754         2236777777775543  44665332222222223332 11   222222  


Q ss_pred             -HHHH-hCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          249 -AHMG-ESGVV---PEEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       249 -~~m~-~~g~~---p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                       ..+. +.|..   .+--.+.+++.++.-.|+.++|.+.+++|.+.
T Consensus       289 l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  289 LSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence             2222 33432   33444688999999999999999999999874

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=93.17  E-value=0.84  Score=47.61  Aligned_cols=66  Identities=9%  Similarity=-0.032  Sum_probs=56.7

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR----SYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      +.+...++++..+|.+.|++++|...|++..+  +.|+..    +|..+..+|.+.|+.++|.+.+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45677899999999999999999999999887  457753    4788999999999999999999988764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=93.08  E-value=2.5  Score=45.67  Aligned_cols=160  Identities=16%  Similarity=0.121  Sum_probs=107.5

Q ss_pred             HHHHHHHHHcC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684          107 LRHKLDMCSKR---GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT  183 (593)
Q Consensus       107 ~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~  183 (593)
                      |+.-+.-+.+.   -.++.|..+|++..+ |++|...-+-.|+++-....              .|....|+++|++.-.
T Consensus       550 W~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe--------------~GLar~amsiyerat~  614 (835)
T KOG2047|consen  550 WNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEE--------------HGLARHAMSIYERATS  614 (835)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHh
Confidence            66666655553   478999999999998 77766655544554322221              3678889999998543


Q ss_pred             CCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH---HHHhcCChhHHHHHHHHHHh-CCCC
Q 007684          184 DKVDPNE--ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF---GFCKLGNTDKAYEVDAHMGE-SGVV  257 (593)
Q Consensus       184 ~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~---~~~~~g~~~~A~~l~~~m~~-~g~~  257 (593)
                       ++++..  ..||..|+-.+..=-+.....+|++..+.  .|+...-...|.   .=++.|.++.|..+|..--+ ..-+
T Consensus       615 -~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr  691 (835)
T KOG2047|consen  615 -AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPR  691 (835)
T ss_pred             -cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence             334433  47888888776655556677888888774  477655444443   34678999999999988654 2333


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007684          258 PEEPELSALLKLSVDAKKVDKVYEILH  284 (593)
Q Consensus       258 p~~~t~~~Ll~~~~~~g~~~~a~~~l~  284 (593)
                      -+..-|.+.=..=.++|+-+-..++++
T Consensus       692 ~~~~fW~twk~FEvrHGnedT~keMLR  718 (835)
T KOG2047|consen  692 VTTEFWDTWKEFEVRHGNEDTYKEMLR  718 (835)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            455668888888889999655555543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=92.90  E-value=0.4  Score=36.00  Aligned_cols=61  Identities=16%  Similarity=0.242  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLG-NTDKAYEVDAHMG  252 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g-~~~~A~~l~~~m~  252 (593)
                      ..+|..+...+...|++++|+..|++..+..  |+ ...|..+-.+|.+.| +.++|++.+++..
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            3445555555566666666666666655532  32 344555555555555 4555555555543

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.81  E-value=9.1  Score=39.43  Aligned_cols=177  Identities=12%  Similarity=0.081  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCc-ccHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684          192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGI--PPKL-RSYGPALFGFCK---LGNTDKAYEVDAHMGESGVVPEEPELSA  265 (593)
Q Consensus       192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~-~ty~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~  265 (593)
                      +...++-.|-...++|...++++.|...-.  .++. ..--....|+-+   .|+.++|.+++..+....-.++..+|..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            344666679999999999999999987311  1111 111123445556   8999999999999777677788889988


Q ss_pred             HHHHHHh----c-----CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccch-hhhHHHhhhcCCCccc
Q 007684          266 LLKLSVD----A-----KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWD-VSKVREGIVRGGGGWH  335 (593)
Q Consensus       266 Ll~~~~~----~-----g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~g~~~~  335 (593)
                      +.+.|-+    .     ...++|...|.+--+    .++..|.-|--+..-.    ..+...+ ...+++.....     
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe----~~~~~Y~GIN~AtLL~----~~g~~~~~~~el~~i~~~l-----  289 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE----IEPDYYSGINAATLLM----LAGHDFETSEELRKIGVKL-----  289 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc----CCccccchHHHHHHHH----HcCCcccchHHHHHHHHHH-----
Confidence            8887743    1     135677777665533    3333343222211100    0000111 11111111000     


Q ss_pred             ccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          336 GQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       336 g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                                   ++.+   |+        +...-...+...+..++.+..-.|+.+++....++|....
T Consensus       290 -------------~~ll---g~--------kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  290 -------------SSLL---GR--------KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             -------------HHHH---Hh--------hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence                         0000   00        0000112567788888999999999999999999998653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=92.71  E-value=6.4  Score=42.63  Aligned_cols=184  Identities=14%  Similarity=0.096  Sum_probs=97.9

Q ss_pred             CCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCC
Q 007684           76 KSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS  155 (593)
Q Consensus        76 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~  155 (593)
                      .+++...+.+.++++       .+......+....--.+...|+-++|.+..+.-.+..+. +.+.|+++=-.+...   
T Consensus        20 ~kQYkkgLK~~~~iL-------~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d---   88 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQIL-------KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD---   88 (700)
T ss_pred             HHHHHhHHHHHHHHH-------HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh---
Confidence            345555555554444       233333444444444455566677777666665554332 445555443333333   


Q ss_pred             CCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHH
Q 007684          156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFG  234 (593)
Q Consensus       156 ~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~  234 (593)
                                   .+.++|+..|.....-+ +-|...+--+.-.-++.++++.....-.+..+.  .|+ ...|..+..+
T Consensus        89 -------------K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs  152 (700)
T KOG1156|consen   89 -------------KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVA  152 (700)
T ss_pred             -------------hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHH
Confidence                         26677777777666554 455556655555556666666666666666552  244 3456666666


Q ss_pred             HHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHH------HHHhcCCHHHHHHHHHHH
Q 007684          235 FCKLGNTDKAYEVDAHMGESG-VVPEEPELSALLK------LSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       235 ~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~Ll~------~~~~~g~~~~a~~~l~~m  286 (593)
                      +--.|+...|.++.++..... -.|+...|.....      ...+.|..++|.+-+..-
T Consensus       153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~  211 (700)
T KOG1156|consen  153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN  211 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence            666777777777776666433 2344444333222      223455555555444433

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.67  E-value=12  Score=42.90  Aligned_cols=159  Identities=11%  Similarity=-0.012  Sum_probs=120.4

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684          101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ  180 (593)
Q Consensus       101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~  180 (593)
                      ...+.+|..+-.+-.+.|.+.+|.+-|-+.      -|+..|--++..+.+.                |.+++-.+.+..
T Consensus      1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~----------------~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRT----------------GKYEDLVKYLLM 1158 (1666)
T ss_pred             hCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhc----------------CcHHHHHHHHHH
Confidence            344556777777777777777777666432      2667788888888886                699999999998


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 007684          181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE  260 (593)
Q Consensus       181 M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  260 (593)
                      .++..-.|...+  .||-+|++.+++.+..+++       ..|+...-..+-+-|...|.++.|.-+|...         
T Consensus      1159 aRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1159 ARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred             HHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------
Confidence            888877787654  8999999999988766554       3488888888999999999999999888754         


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684          261 PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF  305 (593)
Q Consensus       261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~  305 (593)
                      ..|..|...++.-|.+..|...-++.      -+..|+..+-.+|
T Consensus      1221 SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence            45888888888888888887655544      3456776666666

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=92.61  E-value=2.4  Score=41.64  Aligned_cols=97  Identities=10%  Similarity=-0.029  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHH
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL----RSYGPALFGFCKLGNTDKAYEVDAHMGESG--VVPEEPEL  263 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~  263 (593)
                      ...|...+....+.|++++|...|+.+.+.  .|+.    ..+--+...|...|+.++|...|+.+...-  -......+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            346777776667789999999999999873  2554    355668889999999999999999998521  11123345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          264 SALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       264 ~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      -.+...+...|+.++|..+|+++.+
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5566777889999999999999877

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.29  E-value=1.6  Score=42.80  Aligned_cols=101  Identities=14%  Similarity=0.083  Sum_probs=82.0

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 007684          199 LAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKV  276 (593)
Q Consensus       199 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~  276 (593)
                      -+.+.+++++|...|.+..+  +.|+ .+-|..=-.+|++.|..+.|++=.+.....  .|. ..+|..|-.+|...|++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence            35678999999999999988  4565 566777889999999999999888776643  243 45699999999999999


Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684          277 DKVYEILHRLRTLVRQVSESTFKIIEDWF  305 (593)
Q Consensus       277 ~~a~~~l~~m~~~~~~~~~~t~~~l~~~~  305 (593)
                      ++|.+.|++..+  +.|+-.+|..=+.+-
T Consensus       166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  166 EEAIEAYKKALE--LDPDNESYKSNLKIA  192 (304)
T ss_pred             HHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence            999999998866  778888886666554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.13  E-value=21  Score=40.36  Aligned_cols=190  Identities=15%  Similarity=0.067  Sum_probs=119.3

Q ss_pred             HHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007684           72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC  151 (593)
Q Consensus        72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~  151 (593)
                      .+.+.|+.++|..+.+...       .....++.+..++-..|...++.++|..+|+...+.  -|+......+..+|++
T Consensus        52 sl~r~gk~~ea~~~Le~~~-------~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR  122 (932)
T KOG2053|consen   52 SLFRLGKGDEALKLLEALY-------GLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVR  122 (932)
T ss_pred             HHHHhcCchhHHHHHhhhc-------cCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHH
Confidence            3678899999987764443       334457778999999999999999999999988876  5665444444556665


Q ss_pred             cCCCCCCCCCCCcccccccHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHH
Q 007684          152 KCGSESSENGDRENDSNLGLKR----GFEIFQQMITDKVDPNEATFTSVARLAVAKED----------PEMAFDLVKQMK  217 (593)
Q Consensus       152 ~~~~~~~~~~~~~~~~~g~~~~----a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~----------~~~A~~l~~~m~  217 (593)
                      .                +.+.+    |++++.     ..+-+...|=++++.....-.          ...|.+.++.+.
T Consensus       123 ~----------------~~yk~qQkaa~~LyK-----~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l  181 (932)
T KOG2053|consen  123 E----------------KSYKKQQKAALQLYK-----NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL  181 (932)
T ss_pred             H----------------HHHHHHHHHHHHHHH-----hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence            4                23333    344443     234455566666666654321          234666677766


Q ss_pred             hCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684          218 SFG-IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG-ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR  291 (593)
Q Consensus       218 ~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~  291 (593)
                      +.+ -.-+..-.-.-+..+-..|+.++|++++..=. +.-..-+...-+--++.+...+++.+..++..++.+.+.
T Consensus       182 ~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  182 EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            543 11111111122334446788999999995433 333333444445667778888999999999888877543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=92.12  E-value=4.6  Score=44.55  Aligned_cols=207  Identities=9%  Similarity=0.051  Sum_probs=135.5

Q ss_pred             cCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 007684           58 NRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGIT  136 (593)
Q Consensus        58 ~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  136 (593)
                      ..+.-+... ..|.-++...|+++.+.+.|++.+       .........|+.+-..|+.+|.-..|..+.++-....-.
T Consensus       317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~-------~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~  389 (799)
T KOG4162|consen  317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL-------PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ  389 (799)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence            334444555 667778888888888888886666       455555666888888888889888888888875544323


Q ss_pred             CCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh--CCC--CCCHHHHHHHHHHHHhc--------
Q 007684          137 LSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT--DKV--DPNEATFTSVARLAVAK--------  203 (593)
Q Consensus       137 p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~--~g~--~p~~~ty~~li~~~~~~--------  203 (593)
                      |+..+--.+.. .|...               .+..+++++.-.+...  .+.  ......|-.+--+|...        
T Consensus       390 ps~~s~~Lmasklc~e~---------------l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s  454 (799)
T KOG4162|consen  390 PSDISVLLMASKLCIER---------------LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS  454 (799)
T ss_pred             CCcchHHHHHHHHHHhc---------------hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence            54444333443 67664               2566666665555544  111  12334455555455432        


Q ss_pred             ---CChHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007684          204 ---EDPEMAFDLVKQMKSFGI-PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV  279 (593)
Q Consensus       204 ---g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a  279 (593)
                         ..-.++.+.+++..+.+- .|+. .|. +---|+..++++.|++...+..+.+-.-+...|.-|.-.+...+++..|
T Consensus       455 eR~~~h~kslqale~av~~d~~dp~~-if~-lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A  532 (799)
T KOG4162|consen  455 ERDALHKKSLQALEEAVQFDPTDPLV-IFY-LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA  532 (799)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchH-HHH-HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence               123467788888876432 2333 333 4445677889999999999998876666788888888888888999999


Q ss_pred             HHHHHHHHH
Q 007684          280 YEILHRLRT  288 (593)
Q Consensus       280 ~~~l~~m~~  288 (593)
                      +.+.+...+
T Consensus       533 l~vvd~al~  541 (799)
T KOG4162|consen  533 LDVVDAALE  541 (799)
T ss_pred             HHHHHHHHH
Confidence            988876543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=92.09  E-value=16  Score=40.46  Aligned_cols=265  Identities=14%  Similarity=0.083  Sum_probs=139.9

Q ss_pred             HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCCCCCC--CCC-CcccccccHHHHH----HHHHHHHhC
Q 007684          115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC---KCGSESSE--NGD-RENDSNLGLKRGF----EIFQQMITD  184 (593)
Q Consensus       115 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~---~~~~~~~~--~~~-~~~~~~g~~~~a~----~l~~~M~~~  184 (593)
                      .+.+..+++..-+......+...+..++..+...+..   .+..|...  ..+ ..+.-..+.+++.    -.+.++...
T Consensus       238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~  317 (799)
T KOG4162|consen  238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK  317 (799)
T ss_pred             cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence            3456667777777777766666677766665443322   11111100  000 0000111233332    233444445


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS  264 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  264 (593)
                      .+.-|...|-.|.-+....|+++.+-+.|++....-+ -....|..+-..|...|.-.+|..++++-....-.|+..+--
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            5666788888888888889999999999988875322 345677778888888888888888888765333234443322


Q ss_pred             HHH-HHH-HhcCCHHHHHHHHHHHHHccC----CCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccc
Q 007684          265 ALL-KLS-VDAKKVDKVYEILHRLRTLVR----QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQG  338 (593)
Q Consensus       265 ~Ll-~~~-~~~g~~~~a~~~l~~m~~~~~----~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~  338 (593)
                      .++ ..| .+-|.++++..+-.+......    ...+..+..+-=+|. ..+  .....|.+   ++...+.        
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~-~~A--~~a~~~se---R~~~h~k--------  462 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYG-FQA--RQANLKSE---RDALHKK--------  462 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH-hHh--hcCCChHH---HHHHHHH--------
Confidence            222 223 235566777666666554211    111112211111111 110  01111111   0000000        


Q ss_pred             cccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeecc
Q 007684          339 WLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGA  415 (593)
Q Consensus       339 ~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~  415 (593)
                                  .+         ..-.+++.++|.|+.....+-.-|+.++++.+|....++.++-++..++...-+
T Consensus       463 ------------sl---------qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whL  518 (799)
T KOG4162|consen  463 ------------SL---------QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHL  518 (799)
T ss_pred             ------------HH---------HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHH
Confidence                        00         001112224444444444555568889999999999999999877776655543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=92.07  E-value=1  Score=34.13  Aligned_cols=53  Identities=19%  Similarity=0.214  Sum_probs=28.5

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          199 LAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       199 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      .|.+.+++++|.++++.+...+  |+ ...+...-..+.+.|++++|.+.++...+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4555556666666666555532  32 34444455555555566666555555553

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=91.88  E-value=0.34  Score=37.50  Aligned_cols=64  Identities=16%  Similarity=0.160  Sum_probs=51.2

Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          225 LRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVV-PE-EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ..+|+.+-..|...|++++|++.|++....    |-. |+ ..++..+..++...|+.++|.+++++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            357899999999999999999999988742    211 22 45588899999999999999999988754

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=91.52  E-value=0.89  Score=34.07  Aligned_cols=62  Identities=11%  Similarity=0.018  Sum_probs=52.5

Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 007684          225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAK-KVDKVYEILHRLRT  288 (593)
Q Consensus       225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g-~~~~a~~~l~~m~~  288 (593)
                      ..+|..+-..+...|++++|+..|++..+..  |+ ...|..+-.++...| ++++|.+.+++..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            4567888899999999999999999998754  54 455888889999999 79999999998765

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=91.19  E-value=1.5  Score=33.17  Aligned_cols=66  Identities=12%  Similarity=0.059  Sum_probs=51.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684          232 LFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII  301 (593)
Q Consensus       232 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l  301 (593)
                      -..|.+.+++++|.++++.+...+  | +...+...-.++.+.|++++|.+.|++..+  ..|+......+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~   68 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARAL   68 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHH
Confidence            357889999999999999998754  4 444577788889999999999999999986  34555544433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=91.14  E-value=5.4  Score=42.19  Aligned_cols=123  Identities=16%  Similarity=0.091  Sum_probs=81.3

Q ss_pred             CcccccccHHHHHHHHHHHHhCCCCCCHHHHHHH-------------------------HHHHHhcCChHHHHHHHHHHH
Q 007684          163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV-------------------------ARLAVAKEDPEMAFDLVKQMK  217 (593)
Q Consensus       163 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l-------------------------i~~~~~~g~~~~A~~l~~~m~  217 (593)
                      ..+.+.++.+.|+..|.+.......||..+=...                         -..+.+.|++..|...+.++.
T Consensus       306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI  385 (539)
T KOG0548|consen  306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI  385 (539)
T ss_pred             hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            4555667888888888776655444443321111                         234567899999999999998


Q ss_pred             hCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       218 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +.. +-|.+.|+.--.+|.+.|.+..|.+=.+.-.+.  .|+... |..=..++....++++|.+.|.+-++
T Consensus       386 kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  386 KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            865 234789999999999999999888766655543  233222 33333333344577888888887766

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=90.64  E-value=12  Score=39.82  Aligned_cols=220  Identities=14%  Similarity=0.122  Sum_probs=125.3

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK  185 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g  185 (593)
                      +..+.++..+..++..|++-++...+..   ...+|...+. +|...                |...+....-+.-.+.|
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~----------------~~~~~c~~~c~~a~E~g  287 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLER----------------GKYAECIELCEKAVEVG  287 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhc----------------cHHHHhhcchHHHHHHh
Confidence            6778888889999999999999877763   4455655554 55554                23333333333332222


Q ss_pred             CCCCHHHHHH-------HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684          186 VDPNEATFTS-------VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP  258 (593)
Q Consensus       186 ~~p~~~ty~~-------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  258 (593)
                       .-...-|+.       +-.+|.+.++.+.|...|.+....-..|+..         .+....+++....+...-  +.|
T Consensus       288 -re~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~p  355 (539)
T KOG0548|consen  288 -RELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INP  355 (539)
T ss_pred             -HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hCh
Confidence             111122222       3346666788899999998866543333321         223344444444443332  223


Q ss_pred             CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccc
Q 007684          259 EEPE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES-TFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHG  336 (593)
Q Consensus       259 ~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~-t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g  336 (593)
                      +... .-.=...+.+.|++..|...|.++....  |+.. .|.--...|.+.+....+                      
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~a----------------------  411 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEA----------------------  411 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHH----------------------
Confidence            3322 2222556678899999999999987643  5443 443333333322221111                      


Q ss_pred             cccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          337 QGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       337 ~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                                              ...+-.++.+.|+...-|.--..++-...++++|.+.|++-++..
T Consensus       412 ------------------------L~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  412 ------------------------LKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             ------------------------HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                                    112333455677766666666677777788888888888877654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=90.52  E-value=7.4  Score=40.40  Aligned_cols=117  Identities=11%  Similarity=0.153  Sum_probs=82.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHH-HHhCCCCCCHHHH-HH
Q 007684          189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPALFGFCKLGNTDKAYEVDAH-MGESGVVPEEPEL-SA  265 (593)
Q Consensus       189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~-~~  265 (593)
                      -..+|...|++-.+..-++.|..+|-+..+.| +.+++..|+++|.-+| .|+...|..+|+- |+.   -||...| +.
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k  471 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK  471 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence            45678889999999999999999999999988 6788899999988776 5688899999885 332   2555554 45


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCC-CCHHHHHHHHHHHhcch
Q 007684          266 LLKLSVDAKKVDKVYEILHRLRTLVRQ-VSESTFKIIEDWFDSVD  309 (593)
Q Consensus       266 Ll~~~~~~g~~~~a~~~l~~m~~~~~~-~~~~t~~~l~~~~~~~~  309 (593)
                      .+..+..-++-..|..+|+...+..-. --...|..++..=...|
T Consensus       472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G  516 (660)
T COG5107         472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG  516 (660)
T ss_pred             HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc
Confidence            666777788888888888844331110 11335555554433333

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=90.43  E-value=18  Score=35.10  Aligned_cols=164  Identities=10%  Similarity=-0.004  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL---YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ  180 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll---~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~  180 (593)
                      ...|. ....+.+.|++++|.+.|+++...--. +.....+.+   .++-+.                ++.++|...|++
T Consensus        33 ~~~Y~-~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~----------------~~y~~A~~~~e~   94 (243)
T PRK10866         33 SEIYA-TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKN----------------ADLPLAQAAIDR   94 (243)
T ss_pred             HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhc----------------CCHHHHHHHHHH
Confidence            33355 444556789999999999999886322 233333332   244443                599999999999


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHh--c---------------CC---hHHHHHHHHHHHhCCCCCCcccH------------
Q 007684          181 MITDKVDPNEATFTSVARLAVA--K---------------ED---PEMAFDLVKQMKSFGIPPKLRSY------------  228 (593)
Q Consensus       181 M~~~g~~p~~~ty~~li~~~~~--~---------------g~---~~~A~~l~~~m~~~g~~p~~~ty------------  228 (593)
                      ..+....-...-|.-.+.+.+.  .               .|   ...|++.|+++.+.  -|+..-.            
T Consensus        95 fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~  172 (243)
T PRK10866         95 FIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKD  172 (243)
T ss_pred             HHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHH
Confidence            9876533333445555555442  1               12   23566666666542  1433110            


Q ss_pred             ------HHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684          229 ------GPALFGFCKLGNTDKAYEVDAHMGE--SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       229 ------~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~  287 (593)
                            -.+..-|-+.|.+..|..=++.+.+  .+-+........++.+|.+.|..++|..+...+.
T Consensus       173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence                  1234457778888888888888775  2344455567778888888888888887766554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=90.37  E-value=17  Score=39.54  Aligned_cols=190  Identities=12%  Similarity=0.046  Sum_probs=96.2

Q ss_pred             HhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007684           73 FSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK  152 (593)
Q Consensus        73 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~  152 (593)
                      +..-|+.++|....+.-+       .....+...|.++--.+-...++++|++-|..+...+- -|...+.-|-.+=++.
T Consensus        51 L~~lg~~~ea~~~vr~gl-------r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~Qm  122 (700)
T KOG1156|consen   51 LNCLGKKEEAYELVRLGL-------RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQM  122 (700)
T ss_pred             hhcccchHHHHHHHHHHh-------ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHH
Confidence            444566677766663333       22233344488877778888999999999998887742 2445444443333333


Q ss_pred             CCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCcccHHHH
Q 007684          153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPA  231 (593)
Q Consensus       153 ~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~l  231 (593)
                                      |+++...+.-.+..+.. +-..+.|..++.++.-.|+...|..++++.++.. -.|+...|.-.
T Consensus       123 ----------------Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s  185 (700)
T KOG1156|consen  123 ----------------RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS  185 (700)
T ss_pred             ----------------HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence                            24455555555554443 3344556666666666666666666666665432 23444433332


Q ss_pred             HHH------HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          232 LFG------FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       232 i~~------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ...      ..+.|..++|.+-+..-+. .+.-....-..-...+.+.++.++|..++..+..
T Consensus       186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~  247 (700)
T KOG1156|consen  186 ELLLYQNQILIEAGSLQKALEHLLDNEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE  247 (700)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHhhhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence            222      2234444444444333321 1111111122233344455555555555555544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=90.31  E-value=10  Score=38.37  Aligned_cols=98  Identities=11%  Similarity=0.075  Sum_probs=68.5

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |....|.++-.+.+    .||..-|-.-|++++..++|++-.++-..    .-  +..-|-+.+.++.+.|...+|..+.
T Consensus       191 ~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA~~yI  260 (319)
T PF04840_consen  191 GQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEASKYI  260 (319)
T ss_pred             CCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHHHHHH
Confidence            46667776665554    67888888888888888888877665432    22  2378888888888888888888777


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      ..+      +    +..-+..|.+.|++.+|.+.--+.
T Consensus       261 ~k~------~----~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  261 PKI------P----DEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             HhC------C----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence            763      2    245566777888888777654443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=89.90  E-value=6.2  Score=38.81  Aligned_cols=95  Identities=9%  Similarity=0.018  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      .|+..+....+.|++++|...|+.+.+.  .|+.    ..+-.+-.+|...                |++++|...|+.+
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~----------------g~~~~A~~~f~~v  206 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNK----------------GKKDDAAYYFASV  206 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHc----------------CCHHHHHHHHHHH
Confidence            3777777767778888888888887766  3332    1222222344443                4777777777777


Q ss_pred             HhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          182 ITDKV--DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       182 ~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      .....  +....++-.+...+...|+.++|..+++++.+
T Consensus       207 v~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        207 VKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            65321  11223344445556677777777777777765

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=89.60  E-value=13  Score=32.11  Aligned_cols=119  Identities=14%  Similarity=0.120  Sum_probs=74.4

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCC----------------CCcccHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIP----------------PKLRSYGPA  231 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~----------------p~~~ty~~l  231 (593)
                      |..+++.++..+.....   +..-||-+|--...+-+-+...++++.+-+ ..+.                -+..-.+..
T Consensus        16 G~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~A   92 (161)
T PF09205_consen   16 GDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDLA   92 (161)
T ss_dssp             T-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHHH
T ss_pred             chHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHHH
Confidence            68889999999887533   445566666555555666666777766633 1111                122334556


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684          232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR  291 (593)
Q Consensus       232 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~  291 (593)
                      +..+.++|+-|.-.+++.++.. +-.++....-.+..+|.+-|...++-+++.+.-+.|.
T Consensus        93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            7777778888888888888764 4457777788889999999999999999988877665

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=89.53  E-value=7.8  Score=38.82  Aligned_cols=128  Identities=12%  Similarity=0.097  Sum_probs=73.9

Q ss_pred             HHhcCCCcccCCCCcccccchHHhhh------hcCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 007684           72 AFSKKSTVNESSAPNTGTMSNKSKKK------ARRESPE--GVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHY  142 (593)
Q Consensus        72 ~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty  142 (593)
                      .+.+.|.+++|+.-|+++++......      .+.....  ......+..+...||...|+.....+.+.  .| |...|
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~  192 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLR  192 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHH
Confidence            36689999999999988874322100      0001111  12555667788889999999999998876  22 33333


Q ss_pred             HHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          143 NVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       143 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      ..--.+|...                |....|+.=++...+.. .-++.++--+-..+...|+.+.++...++..+
T Consensus       193 ~~Rakc~i~~----------------~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK  251 (504)
T KOG0624|consen  193 QARAKCYIAE----------------GEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK  251 (504)
T ss_pred             HHHHHHHHhc----------------CcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence            3333455554                45555555444433332 23344444455555666666666666666554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.41  E-value=5.4  Score=44.38  Aligned_cols=147  Identities=11%  Similarity=0.043  Sum_probs=90.4

Q ss_pred             HHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 007684           72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQHHYNVLLYVCS  150 (593)
Q Consensus        72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~ll~~~~  150 (593)
                      .|...|..++|....            ....++.+|..|-.+|.+..+++-|.--+..|... |.       .+|=.+- 
T Consensus       737 fyvtiG~MD~AfksI------------~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga-------RAlR~a~-  796 (1416)
T KOG3617|consen  737 FYVTIGSMDAAFKSI------------QFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA-------RALRRAQ-  796 (1416)
T ss_pred             EEEEeccHHHHHHHH------------HHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH-------HHHHHHH-
Confidence            455556666554443            23446778999999999999999998877777643 11       0110000 


Q ss_pred             ccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH
Q 007684          151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP  230 (593)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~  230 (593)
                      +.+...+++ +..-....|.+++|..+|++.+.         |-.|=+.|-..|.|++|+++-+.=-.  +.. ..||-.
T Consensus       797 q~~~e~eak-vAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR--iHL-r~Tyy~  863 (1416)
T KOG3617|consen  797 QNGEEDEAK-VAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR--IHL-RNTYYN  863 (1416)
T ss_pred             hCCcchhhH-HHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc--eeh-hhhHHH
Confidence            000000000 00000113799999999999885         44556677889999999998764322  211 235555


Q ss_pred             HHHHHHhcCChhHHHHHHHHH
Q 007684          231 ALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       231 li~~~~~~g~~~~A~~l~~~m  251 (593)
                      -..-+-..+|++.|++.|++-
T Consensus       864 yA~~Lear~Di~~AleyyEK~  884 (1416)
T KOG3617|consen  864 YAKYLEARRDIEAALEYYEKA  884 (1416)
T ss_pred             HHHHHHhhccHHHHHHHHHhc
Confidence            666666788899999988875

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=89.35  E-value=12  Score=37.01  Aligned_cols=114  Identities=11%  Similarity=-0.046  Sum_probs=65.0

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684          101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQ  179 (593)
Q Consensus       101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~  179 (593)
                      +.+..-|-.|-..|...|+...|..-|....+.- .+|...+..+-. ++.+.+              .....++.++|+
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~--------------~~~ta~a~~ll~  217 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAG--------------QQMTAKARALLR  217 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC--------------CcccHHHHHHHH
Confidence            3344457777777777777777777777766551 113333333322 222221              124556777777


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHH
Q 007684          180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL  232 (593)
Q Consensus       180 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li  232 (593)
                      ++.... +-|..+...|...+...|++.+|...|+.|.+..  |.......+|
T Consensus       218 ~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~i  267 (287)
T COG4235         218 QALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLI  267 (287)
T ss_pred             HHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHH
Confidence            777654 4455566666667777777777777777776632  3333444444

>KOG3777 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.31  E-value=0.21  Score=51.74  Aligned_cols=102  Identities=22%  Similarity=0.236  Sum_probs=73.3

Q ss_pred             CcCeeeeccceecccCC--CCChhhHHHHHHHHHhhCCCCCceEEEecCCCcCCCCCCCcchHHHHHHHHhCCcEEeCCC
Q 007684          407 PFDAVIDGANVGLVNQH--NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPP  484 (593)
Q Consensus       407 ~~d~vidg~nv~~~~~~--~~~~~~l~~vv~~l~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (593)
                      ..-++|||.|||+-..|  -|+..-+.-.++.+.++..  +.+-+++...+-+..   .+.  +++.++.+...+-|||.
T Consensus        12 ~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~~~~--rd~tv~~~~~r~e~~---~p~--~~l~~l~~~~~~~ftp~   84 (443)
T KOG3777|consen   12 LRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQRGH--RDITVLVPSWRKEAT---RPD--AILRELEEKKILVFTPD   84 (443)
T ss_pred             ccCceeeccchhhcccchhheecccceeehhhhhhhcc--cCcchhchhhhhcCC---chH--HHHHHHHhccccccCCC
Confidence            34579999999998876  3455566666777776432  333444444333321   222  37888888888999998


Q ss_pred             C--------CCChHHHHHHHHhCCcEEEecchhhccccc
Q 007684          485 G--------SNDDWYWLYATVNCKSLLVTNDEMRDHLFQ  515 (593)
Q Consensus       485 ~--------s~DD~~~lyaa~~~~~~~vs~D~~rdh~~~  515 (593)
                      .        ..||||..--+++++..|++||..||-.-+
T Consensus        85 ~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le  123 (443)
T KOG3777|consen   85 RSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILE  123 (443)
T ss_pred             hhhccceeeeehhhhHhhhhccccceecCCchHHHHHhh
Confidence            7        689999999999999999999999997543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=89.20  E-value=3.6  Score=44.41  Aligned_cols=203  Identities=11%  Similarity=0.068  Sum_probs=107.4

Q ss_pred             hhHHhhcCCccccchHHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHH--HHHH-----HHHHHHcCCCHHHHH
Q 007684           52 ITDIKQNRFSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEG--VLRH-----KLDMCSKRGDVFEAL  124 (593)
Q Consensus        52 ~~~m~~~g~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----li~~~~~~g~~~~A~  124 (593)
                      +++|+++|-.|+..  ++...++-.|++.||..+|.+.          ...+..  .|+-     ...-+.+.|+-++-.
T Consensus       623 L~~~k~rge~P~~i--LlA~~~Ay~gKF~EAAklFk~~----------G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKK  690 (1081)
T KOG1538|consen  623 LEERKKRGETPNDL--LLADVFAYQGKFHEAAKLFKRS----------GHENRALEMYTDLRMFDYAQEFLGSGDPKEKK  690 (1081)
T ss_pred             HHHHHhcCCCchHH--HHHHHHHhhhhHHHHHHHHHHc----------CchhhHHHHHHHHHHHHHHHHHhhcCChHHHH
Confidence            35788888777654  4455577789999999998221          111111  1221     122233444444444


Q ss_pred             HHHHHHHHC--CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684          125 RLYDDARSN--GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA  202 (593)
Q Consensus       125 ~l~~~m~~~--g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~  202 (593)
                      .+.++-.+.  .++-....-..||++=...       ..++-...+|-.+-+.++=+++-    ..+..+...+..-+.+
T Consensus       691 mL~RKRA~WAr~~kePkaAAEmLiSaGe~~-------KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~  759 (1081)
T KOG1538|consen  691 MLIRKRADWARNIKEPKAAAEMLISAGEHV-------KAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKK  759 (1081)
T ss_pred             HHHHHHHHHhhhcCCcHHHHHHhhcccchh-------hhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhh
Confidence            444332221  1111112222222210000       00111111234444444443333    2344556666666667


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHH
Q 007684          203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE-----------PELSALLKLSV  271 (593)
Q Consensus       203 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----------~t~~~Ll~~~~  271 (593)
                      ...+..|-++|..|-+.         ..++......+++++|+.+-+...+  +.||+           .-|...-.+|.
T Consensus       760 l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfh  828 (1081)
T KOG1538|consen  760 LDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFH  828 (1081)
T ss_pred             ccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHH
Confidence            78888899999888652         2366777788999999888776542  23332           22444456777


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 007684          272 DAKKVDKVYEILHRLRT  288 (593)
Q Consensus       272 ~~g~~~~a~~~l~~m~~  288 (593)
                      ++|+..+|..+++++..
T Consensus       829 kAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  829 KAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             HhcchHHHHHHHHHhhh
Confidence            88888888888888755

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.94  E-value=5.5  Score=42.37  Aligned_cols=161  Identities=14%  Similarity=0.144  Sum_probs=104.1

Q ss_pred             HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007684           70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC  149 (593)
Q Consensus        70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~  149 (593)
                      .....-.++++++.+....     .  +--...|....+.++.-+-+.|-.+.|+.+...-..+            ..+.
T Consensus       268 fk~av~~~d~~~v~~~i~~-----~--~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLA  328 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAA-----S--NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELA  328 (443)
T ss_dssp             HHHHHHTT-HHH-----HH-----H--HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHH
T ss_pred             HHHHHHcCChhhhhhhhhh-----h--hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHH
Confidence            3344456666666555520     0  0111335666888888889999999999887653322            2333


Q ss_pred             HccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHH
Q 007684          150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG  229 (593)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~  229 (593)
                      .+                +|+++.|.++-++.      .+...|..|...+.+.|+++.|.+.|.+.++         |.
T Consensus       329 l~----------------lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~  377 (443)
T PF04053_consen  329 LQ----------------LGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FS  377 (443)
T ss_dssp             HH----------------CT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HH
T ss_pred             Hh----------------cCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------cc
Confidence            33                36888888765433      4778999999999999999999999987654         56


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       230 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      .|+--|.-.|+.++..++-+.....|-      ++..+.++.-.|+.++..++|.+-
T Consensus       378 ~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  378 GLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             ccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            788889999999888888887776653      566666777778888888766553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=88.88  E-value=3.5  Score=43.15  Aligned_cols=63  Identities=10%  Similarity=-0.100  Sum_probs=55.4

Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP----ELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      ...++.+..+|.+.|++++|...|++..+.  .|+..    +|..+..+|...|+.++|.+.+++..+.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            467889999999999999999999998754  46643    5899999999999999999999999874

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.85  E-value=18  Score=32.78  Aligned_cols=134  Identities=13%  Similarity=0.159  Sum_probs=78.4

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684          124 LRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK  203 (593)
Q Consensus       124 ~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~  203 (593)
                      .++++-+.+.|+.|+...|..++.++.+.+                +    ...+.++.+.++-+|.......+-.+.. 
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~----------------~----~~~L~qllq~~Vi~DSk~lA~~LLs~~~-   72 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNG----------------Q----FSQLHQLLQYHVIPDSKPLACQLLSLGN-   72 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------C----HHHHHHHHhhcccCCcHHHHHHHHHhHc-
Confidence            345555667778888888888888777762                2    5556666777777776665555433322 


Q ss_pred             CChHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007684          204 EDPEMAFDLVKQMKSFGIPPKLR-SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI  282 (593)
Q Consensus       204 g~~~~A~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~  282 (593)
                       ....+.++--+|.+.     .. .|..++..+...|++-+|.++.+....    .+......++.+-.+.++...-..+
T Consensus        73 -~~~~~~Ql~lDMLkR-----L~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V  142 (167)
T PF07035_consen   73 -QYPPAYQLGLDMLKR-----LGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAV  142 (167)
T ss_pred             -cChHHHHHHHHHHHH-----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHH
Confidence             233344444444331     12 456677778888888888877776422    1112234466666666665555555


Q ss_pred             HHHHHH
Q 007684          283 LHRLRT  288 (593)
Q Consensus       283 l~~m~~  288 (593)
                      ++-..+
T Consensus       143 ~~ff~~  148 (167)
T PF07035_consen  143 FRFFEE  148 (167)
T ss_pred             HHHHHH
Confidence            555544

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=88.49  E-value=13  Score=37.70  Aligned_cols=122  Identities=10%  Similarity=0.053  Sum_probs=92.0

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      .+..|.-|...|+...|.++..+.+    .|+..-|-..|.+++..                ++|++-..+-.   . .-
T Consensus       180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~----------------~~w~eL~~fa~---s-kK  235 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAEN----------------KDWDELEKFAK---S-KK  235 (319)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhc----------------CCHHHHHHHHh---C-CC
Confidence            6777888889999988888866543    47888898899998887                48877666432   2 22


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL  266 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L  266 (593)
                      +  +.-|-.++.+|.+.|+.++|..++..          .++..-+..|.+.|++.+|.+.-.+..      |...+..+
T Consensus       236 s--PIGyepFv~~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i  297 (319)
T PF04840_consen  236 S--PIGYEPFVEACLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQI  297 (319)
T ss_pred             C--CCChHHHHHHHHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHH
Confidence            3  48899999999999999999998876          344678899999999999987755542      55555555


Q ss_pred             HHHH
Q 007684          267 LKLS  270 (593)
Q Consensus       267 l~~~  270 (593)
                      .+-+
T Consensus       298 ~~~~  301 (319)
T PF04840_consen  298 LKRC  301 (319)
T ss_pred             HHHC
Confidence            4444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=88.03  E-value=24  Score=34.81  Aligned_cols=176  Identities=13%  Similarity=0.114  Sum_probs=116.5

Q ss_pred             HHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC--ChH
Q 007684          131 RSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT-DKVDPNEATFTSVARLAVAKE--DPE  207 (593)
Q Consensus       131 ~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g--~~~  207 (593)
                      +..|.++...-.-.++..+...-........-+--..+..+.+|+.+|+.... ..+--|+.+.+.+++......  ...
T Consensus       104 ~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~  183 (292)
T PF13929_consen  104 KSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLN  183 (292)
T ss_pred             HHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchh
Confidence            35577777777666666655431110000000000123356677777764332 345668888888888877622  333


Q ss_pred             HHHHHHHHHHh-CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007684          208 MAFDLVKQMKS-FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES-GVVPEEPELSALLKLSVDAKKVDKVYEILHR  285 (593)
Q Consensus       208 ~A~~l~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~  285 (593)
                      .-.++.+-+.. .+-.++..+-..+|..+++.+++++-+++++.-... +..-|..-|..+|+.-.+.|+..-...+..+
T Consensus       184 alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~  263 (292)
T PF13929_consen  184 ALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD  263 (292)
T ss_pred             hHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence            34455555543 445678888889999999999999999999987654 5566778899999999999998777666554


Q ss_pred             -----HHHccCCCCHHHHHHHHHHHh
Q 007684          286 -----LRTLVRQVSESTFKIIEDWFD  306 (593)
Q Consensus       286 -----m~~~~~~~~~~t~~~l~~~~~  306 (593)
                           +.+.++..++..-..|...|.
T Consensus       264 GhLLwikR~~V~v~~~L~~~L~~LF~  289 (292)
T PF13929_consen  264 GHLLWIKRNNVDVTDELRSQLSELFK  289 (292)
T ss_pred             CCeEEeeecCCcCCHHHHHHHHHHHH
Confidence                 355677788888888887774

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=87.89  E-value=6.7  Score=44.66  Aligned_cols=176  Identities=11%  Similarity=0.018  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCC--------------------CCcc
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG--------------------DREN  165 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~--------------------~~~~  165 (593)
                      .|..|-..|+...|...|..-|+...+..-. +....-.+...|++...++.+.++                    --.+
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy  572 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY  572 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence            4777777787777888888888877765311 334444455567666555443211                    1224


Q ss_pred             cccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHH--HHHHhcCChhH
Q 007684          166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL--FGFCKLGNTDK  243 (593)
Q Consensus       166 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li--~~~~~~g~~~~  243 (593)
                      ...+++..|+.-|+...... +-|...+..+..+|..+|+...|.++|.+...  +.|+ .+|.-.-  ..-|..|..++
T Consensus       573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHHHHHHHhhhHHH
Confidence            56688888999998887766 56788999999999999999999999998876  4455 3444333  33467889999


Q ss_pred             HHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          244 AYEVDAHMGES------GVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       244 A~~l~~~m~~~------g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      |...+......      +..--..++-.+...+...|-..++..++++-
T Consensus       649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks  697 (1238)
T KOG1127|consen  649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS  697 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            98888876521      11111233444444444555555555555443

>PRK11906 transcriptional regulator; Provisional

Probab=87.44  E-value=18  Score=38.12  Aligned_cols=158  Identities=9%  Similarity=0.114  Sum_probs=103.3

Q ss_pred             CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684          118 GDVFEALRLYDDARSN-GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV  196 (593)
Q Consensus       118 g~~~~A~~l~~~m~~~-g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l  196 (593)
                      -+.+.|+.+|.+..+. .+.|+-..-..++..|.-....      +..........+|.++-+...+.+ +-|..+...+
T Consensus       272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~------~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~  344 (458)
T PRK11906        272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL------HGKSELELAAQKALELLDYVSDIT-TVDGKILAIM  344 (458)
T ss_pred             HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH------hcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence            3577899999998832 3566654444444433221100      000012357788899999888888 7788888888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 007684          197 ARLAVAKEDPEMAFDLVKQMKSFGIPPKL-RSYGPALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSALLKLSVDAK  274 (593)
Q Consensus       197 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~~~g  274 (593)
                      ..+....++.+.|..+|++...  +.||. .+|...-....-+|+.++|.+.+++..+ ...+.-.......++.|+.++
T Consensus       345 g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~  422 (458)
T PRK11906        345 GLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP  422 (458)
T ss_pred             HHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc
Confidence            8888889999999999999987  45774 4444444455568999999999998443 333333444455566776655


Q ss_pred             CHHHHHHHHHH
Q 007684          275 KVDKVYEILHR  285 (593)
Q Consensus       275 ~~~~a~~~l~~  285 (593)
                       .+.+..++-+
T Consensus       423 -~~~~~~~~~~  432 (458)
T PRK11906        423 -LKNNIKLYYK  432 (458)
T ss_pred             -hhhhHHHHhh
Confidence             5566665543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=86.96  E-value=15  Score=39.99  Aligned_cols=123  Identities=13%  Similarity=0.078  Sum_probs=72.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHH
Q 007684          107 LRHKLDMCSKRGDVFEALRL---------YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI  177 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l---------~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l  177 (593)
                      +.+-+-.|..+|.+++|..+         ++.+...  ..+.-.+++.=.+|.+-+              +-.+-+.+.-
T Consensus       559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVR--------------dl~~L~li~E  622 (1081)
T KOG1538|consen  559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVR--------------DLRYLELISE  622 (1081)
T ss_pred             ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHh--------------ccHHHHHHHH
Confidence            56666777888888887665         3333222  123445555555776643              2356666777


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684          178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG----IPPKLRSYGPALFGFCKLGNTDKAYEVDA  249 (593)
Q Consensus       178 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~ty~~li~~~~~~g~~~~A~~l~~  249 (593)
                      +++|+++|-.|+...   +...|+-.|++.+|-++|.+-...+    .-.|.+.|. ...-|...|..++-..+.+
T Consensus       623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD-~aQE~~~~g~~~eKKmL~R  694 (1081)
T KOG1538|consen  623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD-YAQEFLGSGDPKEKKMLIR  694 (1081)
T ss_pred             HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH-HHHHHhhcCChHHHHHHHH
Confidence            788999998898874   4556777888999988887643211    112233333 3444555555554444433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=86.82  E-value=5.8  Score=39.06  Aligned_cols=81  Identities=12%  Similarity=0.102  Sum_probs=49.6

Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----ccCCCCHHHHHH
Q 007684          226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT-----LVRQVSESTFKI  300 (593)
Q Consensus       226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~-----~~~~~~~~t~~~  300 (593)
                      .++..++..+...|+.+.+.+.++++.... +-++..|..|+.+|.+.|+...|...|+++.+     .|+.|.+.+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            345556666666666666666666665432 23566666666666666666666666666543     566676666666


Q ss_pred             HHHHHhc
Q 007684          301 IEDWFDS  307 (593)
Q Consensus       301 l~~~~~~  307 (593)
                      .......
T Consensus       233 y~~~~~~  239 (280)
T COG3629         233 YEEILRQ  239 (280)
T ss_pred             HHHHhcc
Confidence            6655433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=84.90  E-value=39  Score=34.74  Aligned_cols=166  Identities=13%  Similarity=0.025  Sum_probs=97.6

Q ss_pred             HHHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684          107 LRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT  183 (593)
Q Consensus       107 ~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~  183 (593)
                      +-.++.+  -.-.|+.+.|.+-|+.|...   |......  |. +|....             +.|..+-|...-+..-+
T Consensus       121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllG--LRgLyleAq-------------r~GareaAr~yAe~Aa~  182 (531)
T COG3898         121 LIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLG--LRGLYLEAQ-------------RLGAREAARHYAERAAE  182 (531)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHh--HHHHHHHHH-------------hcccHHHHHHHHHHHHh
Confidence            3344444  33469999999999988864   2222111  22 333321             13677777766665544


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCc--ccHHHHHHHHHhc---CChhHHHHHHHHHHhCCCC
Q 007684          184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPKL--RSYGPALFGFCKL---GNTDKAYEVDAHMGESGVV  257 (593)
Q Consensus       184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~--~ty~~li~~~~~~---g~~~~A~~l~~~m~~~g~~  257 (593)
                      .- +--.-...+++...|..|+||.|+++++.-+. .-+.++.  +.-..|+.+-+..   .+...|.+.-.+  ...+.
T Consensus       183 ~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~--a~KL~  259 (531)
T COG3898         183 KA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE--ANKLA  259 (531)
T ss_pred             hc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH--HhhcC
Confidence            32 22335677888999999999999999998765 3344553  3334444433221   233344443333  23455


Q ss_pred             CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 007684          258 PEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQV  293 (593)
Q Consensus       258 p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~  293 (593)
                      ||.+- -..--.++.+.|+..++-.+++.+-+..-.|
T Consensus       260 pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP  296 (531)
T COG3898         260 PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP  296 (531)
T ss_pred             CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence            66544 2233467788999999999999997744333

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=84.70  E-value=39  Score=32.78  Aligned_cols=56  Identities=9%  Similarity=-0.006  Sum_probs=33.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          196 VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY----GPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty----~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      ....+...|++++|.+.|+++...  -|+...-    -.+..+|-+.++.++|...+++..+
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~   97 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR   97 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            334445567777777777777652  2332111    1244566677777777777777664

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=84.46  E-value=30  Score=37.27  Aligned_cols=167  Identities=16%  Similarity=0.107  Sum_probs=107.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQ-----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ  180 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~  180 (593)
                      +..+++..+-.||-+.+++++.+..+. |+.-..     ..|+..+..+...          ++  .....+.|.++++.
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~----------~~--~~~~~~~a~~lL~~  258 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGI----------DG--EDVPLEEAEELLEE  258 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCC----------cc--cCCCHHHHHHHHHH
Confidence            344556677789999999998886654 333222     2333333322221          00  23588999999999


Q ss_pred             HHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhCC--C-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 007684          181 MITDKVDPNEATFTSV-ARLAVAKEDPEMAFDLVKQMKSFG--I-PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV  256 (593)
Q Consensus       181 M~~~g~~p~~~ty~~l-i~~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~  256 (593)
                      +.+.-  |+..-|... .+.+...|++++|.+.|++.....  . +.....|=-+.-.+.-..++++|.+.|..+.+..-
T Consensus       259 ~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~  336 (468)
T PF10300_consen  259 MLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK  336 (468)
T ss_pred             HHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence            99774  676655543 456677899999999999764311  1 11223344466778889999999999999986432


Q ss_pred             CCCHHHHHHHHHHH-HhcCCH-------HHHHHHHHHHHH
Q 007684          257 VPEEPELSALLKLS-VDAKKV-------DKVYEILHRLRT  288 (593)
Q Consensus       257 ~p~~~t~~~Ll~~~-~~~g~~-------~~a~~~l~~m~~  288 (593)
                       ..-.+|.-+..+| ...|+.       ++|.++|.+...
T Consensus       337 -WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  337 -WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             -cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence             3445566555544 346666       777777777643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=84.32  E-value=3.2  Score=36.45  Aligned_cols=112  Identities=10%  Similarity=0.089  Sum_probs=74.7

Q ss_pred             CcccHHHHHHHHHHhCCChhhHHhhcCCccccch---HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHH
Q 007684           33 NCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTT---GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRH  109 (593)
Q Consensus        33 d~~~~~~ll~~~~~~~~~~~~~m~~~g~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (593)
                      |.-.|..++..+..       .|++++..++..+   |.++.-.+..+...-...+.+.+. .-....-....+...|+.
T Consensus        13 nL~~w~~fi~~~~~-------y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~-~l~~~~~~~~~~~ssf~~   84 (145)
T PF13762_consen   13 NLEVWKTFINSHLP-------YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLH-FLNTDNIIGWLDNSSFHI   84 (145)
T ss_pred             hHHHHHHHHHHHHH-------HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHH-HhhHHHHhhhcccchHHH
Confidence            44455555555543       3666667766655   777766665555555444443331 000101122345556999


Q ss_pred             HHHHHHcCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007684          110 KLDMCSKRGD-VFEALRLYDDARSNGITLSQHHYNVLLYVCSCK  152 (593)
Q Consensus       110 li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~  152 (593)
                      ++.+.++... --.+..+|..|++.+.+++..-|..||.+|.++
T Consensus        85 if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g  128 (145)
T PF13762_consen   85 IFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG  128 (145)
T ss_pred             HHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence            9999988877 667889999999999999999999999999986

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=84.19  E-value=2.2  Score=27.40  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=12.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHH
Q 007684          193 FTSVARLAVAKEDPEMAFDLVKQ  215 (593)
Q Consensus       193 y~~li~~~~~~g~~~~A~~l~~~  215 (593)
                      |+.|...|.+.|++++|.+++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            45555556666666666666555

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=84.16  E-value=27  Score=34.45  Aligned_cols=115  Identities=10%  Similarity=0.000  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhc---CChhHHHH
Q 007684          171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKL---GNTDKAYE  246 (593)
Q Consensus       171 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~---g~~~~A~~  246 (593)
                      .+....-++.=...+ +-|...|-.|...|...|+.+.|..-|.+..+  +.|+ ...+..+-.++...   .+-.+|.+
T Consensus       138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            444444444434444 66888999999999999999999999999877  2333 44444444444433   35568999


Q ss_pred             HHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 007684          247 VDAHMGESGVVPEEP-ELSALLKLSVDAKKVDKVYEILHRLRTLV  290 (593)
Q Consensus       247 l~~~m~~~g~~p~~~-t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~  290 (593)
                      +|+++....  |+.. ...-|-..+...|++.+|...++.|.+..
T Consensus       215 ll~~al~~D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         215 LLRQALALD--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence            999998643  5544 46666678889999999999999998843

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=84.00  E-value=63  Score=34.41  Aligned_cols=71  Identities=13%  Similarity=0.045  Sum_probs=50.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH--HHHHH
Q 007684          196 VARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE--LSALL  267 (593)
Q Consensus       196 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~Ll  267 (593)
                      +...+-+.|+.++|.+.+++|.+.. ..-.......||.++...+...++..++.+..+... |...+  |++.+
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaAL  338 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAAL  338 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHH
Confidence            4445557899999999999997532 212244666799999999999999999999864333 44444  66544

The molecular function of this protein is uncertain.

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=83.95  E-value=36  Score=33.60  Aligned_cols=136  Identities=16%  Similarity=0.157  Sum_probs=93.3

Q ss_pred             CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh-CCCCCCHHHHHHH
Q 007684          119 DVFEALRLYDDARS-NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT-DKVDPNEATFTSV  196 (593)
Q Consensus       119 ~~~~A~~l~~~m~~-~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~~l  196 (593)
                      .+.+|+.+|+...- ..+--|......||+......              +-....-.|+.+-+.. .|-.++..+...+
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~--------------~~~l~alYEvV~~l~~t~~~~l~~~vi~~I  208 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDE--------------NTKLNALYEVVDFLVSTFSKSLTRNVIISI  208 (292)
T ss_pred             HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcc--------------ccchhhHHHHHHHHHhccccCCChhHHHHH
Confidence            35677777773221 335557777778888666521              0133344455555543 3457888999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHH-----HHhCCCCCCHHHHHHHHH
Q 007684          197 ARLAVAKEDPEMAFDLVKQMKSF-GIPPKLRSYGPALFGFCKLGNTDKAYEVDAH-----MGESGVVPEEPELSALLK  268 (593)
Q Consensus       197 i~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~t~~~Ll~  268 (593)
                      |..+++.++|.+-+++++..... +..-|.+-|...|..-.+.|+..-+..+..+     +++.|+..+...-.+|-+
T Consensus       209 l~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~  286 (292)
T PF13929_consen  209 LEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE  286 (292)
T ss_pred             HHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence            99999999999999999988764 5556789999999999999999777776654     124455555554444433

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=83.35  E-value=29  Score=30.00  Aligned_cols=140  Identities=15%  Similarity=0.101  Sum_probs=82.4

Q ss_pred             HHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-------CCCCCCCCCcccccccHHHHHHHH
Q 007684          108 RHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG-------SESSENGDRENDSNLGLKRGFEIF  178 (593)
Q Consensus       108 ~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~-------~~~~~~~~~~~~~~g~~~~a~~l~  178 (593)
                      ..||.+  ..-.|.+++..+++.+.....   +..-||-.|.--.....       .+..+.+.| ...+|++.+....+
T Consensus         4 kkLmeAK~~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFD-is~C~NlKrVi~C~   79 (161)
T PF09205_consen    4 KKLMEAKERILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFD-ISKCGNLKRVIECY   79 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS--GGG-S-THHHHHHH
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcC-chhhcchHHHHHHH
Confidence            344554  445688999999998876542   44445544432111100       000001111 23466777777766


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684          179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV  257 (593)
Q Consensus       179 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~  257 (593)
                      -.+-     -+..-....+......|+-|.-.++..++.+.+ .|+....--+..||.+.|+..+|.+++.+.-+.|++
T Consensus        80 ~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   80 AKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            5543     233456777888999999999999999987533 366666667899999999999999999999888864

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=83.29  E-value=37  Score=31.22  Aligned_cols=126  Identities=9%  Similarity=0.014  Sum_probs=91.4

Q ss_pred             CCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684          136 TLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ  215 (593)
Q Consensus       136 ~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~  215 (593)
                      .|++..--.|-.+....                |+..+|...|++...--..-|....-.+.++....+++.+|...+++
T Consensus        86 ApTvqnr~rLa~al~el----------------Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~  149 (251)
T COG4700          86 APTVQNRYRLANALAEL----------------GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED  149 (251)
T ss_pred             chhHHHHHHHHHHHHHh----------------hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            55655555555566665                69999999999988766677889999999999999999999999999


Q ss_pred             HHhCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007684          216 MKSFGIPPKL---RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE  281 (593)
Q Consensus       216 m~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~  281 (593)
                      +-+..  |.-   .+.-.+-..|...|..+.|+.-|+.....  -|+...-..--..+.+.|+.+++..
T Consensus       150 l~e~~--pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         150 LMEYN--PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HhhcC--CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence            98754  332   23445667888899999999999988754  3444433333334556776555543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=83.04  E-value=11  Score=37.11  Aligned_cols=79  Identities=10%  Similarity=0.115  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE-----SGVVPEEPELS  264 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~  264 (593)
                      ..+++.++..+...|+.+.+.+.++++....- -+...|-.+|.+|.+.|+...|...|+.+..     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            35788899999999999999999999988543 4578999999999999999999999998874     68888877766


Q ss_pred             HHHHH
Q 007684          265 ALLKL  269 (593)
Q Consensus       265 ~Ll~~  269 (593)
                      .....
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            55444

>PRK15331 chaperone protein SicA; Provisional

Probab=82.90  E-value=29  Score=31.24  Aligned_cols=88  Identities=7%  Similarity=-0.165  Sum_probs=61.2

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007684          199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK  278 (593)
Q Consensus       199 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~  278 (593)
                      -+...|++++|..+|.-+.-.+. -+.+-+.-|-.++-..+++++|...|...-..+. -|...+-..-.++...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence            34568999999999998876443 2233334455555567899999999887664332 222334456677888899999


Q ss_pred             HHHHHHHHHH
Q 007684          279 VYEILHRLRT  288 (593)
Q Consensus       279 a~~~l~~m~~  288 (593)
                      |...|+...+
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            9998888876

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=82.73  E-value=31  Score=29.89  Aligned_cols=114  Identities=11%  Similarity=0.040  Sum_probs=78.9

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      +.......+++.+...+ ..+...+|.+|..|++.+ .++..+.++.      .++......++..|-+.+.++++.-++
T Consensus        21 ~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~   92 (140)
T smart00299       21 NLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELY   92 (140)
T ss_pred             CcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHH
Confidence            47889999999988877 477888999999999764 3444444442      134455556888888888888999998


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684          249 AHMGESGVVPEEPELSALLKLSVDA-KKVDKVYEILHRLRTLVRQVSESTFKIIEDWF  305 (593)
Q Consensus       249 ~~m~~~g~~p~~~t~~~Ll~~~~~~-g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~  305 (593)
                      .++..         +...+..+... ++.+.|.+++.+-      -++..|..++..+
T Consensus        93 ~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~  135 (140)
T smart00299       93 KKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKAL  135 (140)
T ss_pred             HhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHH
Confidence            88731         33344444444 7888888877762      2466666666554

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=82.49  E-value=20  Score=30.89  Aligned_cols=90  Identities=16%  Similarity=0.077  Sum_probs=63.1

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHH---HHHHHhc
Q 007684          199 LAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSAL---LKLSVDA  273 (593)
Q Consensus       199 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~L---l~~~~~~  273 (593)
                      +++..|+++.|++.|.+...  +.|. ...||.=..++.-+|+.++|.+=+++..+ .|-+ +-....+.   -..|...
T Consensus        52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence            56778999999999988876  3343 57899999999999999999888887765 4433 22223333   2345667


Q ss_pred             CCHHHHHHHHHHHHHccC
Q 007684          274 KKVDKVYEILHRLRTLVR  291 (593)
Q Consensus       274 g~~~~a~~~l~~m~~~~~  291 (593)
                      |+.|.|..=|+...+.|-
T Consensus       129 g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLGS  146 (175)
T ss_pred             CchHHHHHhHHHHHHhCC
Confidence            888888877777665443

>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]

Probab=82.37  E-value=53  Score=32.60  Aligned_cols=65  Identities=15%  Similarity=0.137  Sum_probs=37.3

Q ss_pred             ChHHHHH-HHHHHHhCCCCCCcccHHHHHHHHHhcCChhH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007684          205 DPEMAFD-LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK-----AYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK  278 (593)
Q Consensus       205 ~~~~A~~-l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~-----A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~  278 (593)
                      .+++... +-++|++.++ |+...-..+-++....+.+.+     |..+++++         .+|.-|+.+++..|+.+-
T Consensus       270 p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL  339 (412)
T KOG2297|consen  270 PVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSEL  339 (412)
T ss_pred             CHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHH
Confidence            3444433 3345677777 776544444444444444444     33444443         468889999999887654


Q ss_pred             H
Q 007684          279 V  279 (593)
Q Consensus       279 a  279 (593)
                      .
T Consensus       340 ~  340 (412)
T KOG2297|consen  340 E  340 (412)
T ss_pred             H
Confidence            3

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.23  E-value=56  Score=31.81  Aligned_cols=127  Identities=9%  Similarity=-0.005  Sum_probs=90.5

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH-----HHHhcCChhH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF-----GFCKLGNTDK  243 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~-----~~~~~g~~~~  243 (593)
                      |.+.-.+.++.+..+..-+-+.+-.+.|.+.-.+.||.+.|...|++..+..-..+..+++.++.     .|.-++++..
T Consensus       191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~  270 (366)
T KOG2796|consen  191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE  270 (366)
T ss_pred             hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHH
Confidence            46777888999988877777889999999999999999999999998876443456666665543     3444678888


Q ss_pred             HHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 007684          244 AYEVDAHMGESGVVPEEPEL--SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI  300 (593)
Q Consensus       244 A~~l~~~m~~~g~~p~~~t~--~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~  300 (593)
                      |...|.+..+..-. |...-  -+|+..|  .|+..+|.+.++.|.+  +-|.+.+-+.
T Consensus       271 a~r~~~~i~~~D~~-~~~a~NnKALcllY--lg~l~DAiK~~e~~~~--~~P~~~l~es  324 (366)
T KOG2796|consen  271 AHRFFTEILRMDPR-NAVANNNKALCLLY--LGKLKDALKQLEAMVQ--QDPRHYLHES  324 (366)
T ss_pred             HHHHHhhccccCCC-chhhhchHHHHHHH--HHHHHHHHHHHHHHhc--cCCccchhhh
Confidence            88888887754321 22222  3344444  6888999999999876  4455555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=81.16  E-value=2.9  Score=26.85  Aligned_cols=23  Identities=17%  Similarity=0.066  Sum_probs=11.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHH
Q 007684          228 YGPALFGFCKLGNTDKAYEVDAH  250 (593)
Q Consensus       228 y~~li~~~~~~g~~~~A~~l~~~  250 (593)
                      |+.|-..|.+.|++++|.++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34445555555555555555554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=81.08  E-value=60  Score=32.11  Aligned_cols=170  Identities=19%  Similarity=0.120  Sum_probs=99.5

Q ss_pred             HHcCCCHHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHcc-CCCCCCCCCCCcccccccHHHHHHHHHH-HHh
Q 007684          114 CSKRGDVFEALRLYDDARSNG--ITLSQ------HHYNVLLYVCSCK-CGSESSENGDRENDSNLGLKRGFEIFQQ-MIT  183 (593)
Q Consensus       114 ~~~~g~~~~A~~l~~~m~~~g--~~p~~------~ty~~ll~~~~~~-~~~~~~~~~~~~~~~~g~~~~a~~l~~~-M~~  183 (593)
                      ..+.|+.+.|..++.+....-  ..|+.      ..||.-..++.+. .          ......-+++|.++++. -..
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~----------~~~a~~wL~~a~~~l~~~~~~   72 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK----------YEEAVKWLQRAYDILEKPGKM   72 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC----------hHHHHHHHHHHHHHHHhhhhc
Confidence            356799999999999887543  23332      2333333344432 1          00000124555566544 111


Q ss_pred             CCCCCCH-----HHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          184 DKVDPNE-----ATFTSVARLAVAKEDPE---MAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       184 ~g~~p~~-----~ty~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      ....|+.     .++..++.+|...+..+   +|.++++.+... . |+ ..+|-.-|..+.+.++.+.+.+++.+|...
T Consensus        73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-Y-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-C-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            1223333     46777888888877654   566666666442 2 44 455656677777789999999999999864


Q ss_pred             CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHccCCCCHH
Q 007684          255 GVVPEEPELSALLKLSVD--AKKVDKVYEILHRLRTLVRQVSES  296 (593)
Q Consensus       255 g~~p~~~t~~~Ll~~~~~--~g~~~~a~~~l~~m~~~~~~~~~~  296 (593)
                      - ...+..+...+..+..  ....+.|...+.++....+.|++.
T Consensus       151 ~-~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~  193 (278)
T PF08631_consen  151 V-DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED  193 (278)
T ss_pred             c-ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence            2 2234445555555522  223456777788887777777775

It is also involved in sporulation [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=80.66  E-value=54  Score=37.84  Aligned_cols=74  Identities=8%  Similarity=0.034  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 007684          206 PEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEIL  283 (593)
Q Consensus       206 ~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l  283 (593)
                      ...|+..|=+-.+  +.|+ ...|..|-.-|+..-+...|..-|....+..  ++. ....+..+.|++...++.|..+.
T Consensus       474 ~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  474 SALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             HHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHH
Confidence            5556655554443  3344 4678888899998888889999999887533  444 44788899999999999999883

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=80.40  E-value=15  Score=39.57  Aligned_cols=128  Identities=13%  Similarity=0.011  Sum_probs=85.8

Q ss_pred             HHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          107 LRHKLDMCSK----RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       107 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      |+..+..++.    ..+++.|.++++.+.++  -|+...|...-.-+...               .|++++|++.|+...
T Consensus       232 y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~---------------~g~~~~Ai~~~~~a~  294 (468)
T PF10300_consen  232 YHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERL---------------KGNLEEAIESFERAI  294 (468)
T ss_pred             HHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH---------------hcCHHHHHHHHHHhc
Confidence            5555555444    46889999999999988  78888876665533332               269999999999765


Q ss_pred             hCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHH-HHHHhcCCh-------hHHHHHHHHH
Q 007684          183 TDKV---DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL-FGFCKLGNT-------DKAYEVDAHM  251 (593)
Q Consensus       183 ~~g~---~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li-~~~~~~g~~-------~~A~~l~~~m  251 (593)
                      ....   +.....+--+.-.++-..+|++|.+.|..+.+..- -+..+|.-+. .++...|+.       ++|.++|.+.
T Consensus       295 ~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  295 ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            3211   22333444455567788999999999999987432 2334444333 333456777       7888888876


Q ss_pred             H
Q 007684          252 G  252 (593)
Q Consensus       252 ~  252 (593)
                      .
T Consensus       374 p  374 (468)
T PF10300_consen  374 P  374 (468)
T ss_pred             H
Confidence            4

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	593
4g24_A	501	Crystal Structure Of Proteinaceous Rnase P 1 (Prorp		0.0
4g23_A	501	Crystal Structure Of Proteinaceous Rnase P 1 (Prorp		0.0

>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501

Iteration: 1
 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/497 (67%), Positives = 401/497 (80%), Gaps = 10/497 (2%)
Query: 90  MSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC 149
           +S K+KKKA ++SPE +L+ KLDMCSK+GDV EALRLYD+AR NG+ LSQ+HYNVLLYVC
Sbjct: 12  LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVC 71
Query: 150 S-CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208
           S  +  +ESS N         GL RGF+IF+QMI DKV PNEATFT+ ARLAVAK+DPEM
Sbjct: 72  SLAEAATESSPNP--------GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEM 123
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
           AFD+VKQMK+FGI P+LRSYGPALFGFC+ G+ DKAYEVDAHM ES VVPEEPEL+ALLK
Sbjct: 124 AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK 183
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREXXX 328
           +S+D K  DKVY+ L RLR LVRQVS+STF +IE+WF S  A + GV  WDV K+R+   
Sbjct: 184 VSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVV 243
Query: 329 XXXXXXXXXXXXXXXKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ 388
                          KW V+RT++DENGVC  C E+LVCIDI+P ETE FA+SL+ LAC+
Sbjct: 244 SGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACE 303
Query: 389 REVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPL 448
           REV+++FN+FQEWL RHGPFDAVIDGAN+GLVNQ +FSF+QLN  V R +Q+SPSKR+PL
Sbjct: 304 REVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPL 363
Query: 449 VILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDE 508
           VILHK RV+GGPA  PKN+ LL+ W++ GALY TPPGSNDDWYWLYA V+CK LLVTNDE
Sbjct: 364 VILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDE 423
Query: 509 MRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DGLNLLMPPPYSIVIQESENGSWHVPVITG 567
           MRDHLFQLLG SFFPRWKEKHQ+R+SV+R DGL L MPPPYSIVIQESE+G+WHVP+   
Sbjct: 424 MRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVE 483
Query: 568 DDLEAPRQWLCATRARV 584
           DDL+  RQWLCA R++ 
Sbjct: 484 DDLQTSRQWLCAKRSKT 500

>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501

Iteration: 1
 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/497 (66%), Positives = 388/497 (78%), Gaps = 10/497 (2%)
Query: 90  MSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC 149
           +S K+KKKA ++SPE +L+ KLD CSK+GDV EALRLYD+AR NG+ LSQ+HYNVLLYVC
Sbjct: 12  LSRKAKKKAIQQSPEALLKQKLDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVC 71
Query: 150 S-CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208
           S  +  +ESS N         GL RGF+IF+Q I DKV PNEATFT+ ARLAVAK+DPE 
Sbjct: 72  SLAEAATESSPNP--------GLSRGFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEX 123
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
           AFD VKQ K+FGI P+LRSYGPALFGFC+ G+ DKAYEVDAH  ES VVPEEPEL+ALLK
Sbjct: 124 AFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHXVESEVVPEEPELAALLK 183
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREXXX 328
           +S D K  DKVY+ L RLR LVRQVS+STF  IE+WF S  A + GV  WDV K+R+   
Sbjct: 184 VSXDTKNADKVYKTLQRLRDLVRQVSKSTFDXIEEWFKSEVATKTGVKKWDVKKIRDAVV 243
Query: 329 XXXXXXXXXXXXXXXKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ 388
                          KW V+RT+ DENGVC  C E+LVCIDI+P ETE FA+SL+ LAC+
Sbjct: 244 SGGGGWHGQGWLGTGKWNVKRTEXDENGVCKCCKEKLVCIDINPVETETFAASLTRLACE 303
Query: 389 REVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPL 448
           REV+++FN+FQEWL RHGPFDAVIDGAN GLVNQ +FSF+QLN  V R +Q+SPSKR+PL
Sbjct: 304 REVKANFNQFQEWLERHGPFDAVIDGANXGLVNQRSFSFFQLNNTVQRCQQISPSKRLPL 363
Query: 449 VILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDE 508
           VILHK RV+GGPA  PKN+ LL+ W++ GALY TPPGSNDDWYWLYA V+CK LLVTNDE
Sbjct: 364 VILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDE 423
Query: 509 MRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DGLNLLMPPPYSIVIQESENGSWHVPVITG 567
            RDHLFQLLG SFFPRWKEKHQ+R+SV+R DGL L  PPPYSIVIQESE+G+WHVP    
Sbjct: 424 XRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNXPPPYSIVIQESEDGTWHVPXSVE 483
Query: 568 DDLEAPRQWLCATRARV 584
           DDL+  RQWLCA R++ 
Sbjct: 484 DDLQTSRQWLCAKRSKT 500

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	593
3v32_B	185	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	1e-22
3v33_A	223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	7e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	8e-05

>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A Length = 185

 Score = 94.8 bits (235), Expect = 1e-22
 Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 411 VIDGANVGLV--NQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
           VIDG+NV +   N+  FS   +   VN   +      + + +    +    P     ++ 
Sbjct: 28  VIDGSNVAMSHGNKEVFSCRGILLAVNWFLER-GHTDITVFVPSWRKEQPRPDVPITDQH 86

Query: 469 LLDIWRDGGALYTTPPG--------SNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTS 520
           +L        L  TP            DD + +        ++V+ND  RD   +     
Sbjct: 87  ILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQ 143

Query: 521 FFPRWKEKHQIRLSVSRDGLNLLMPPP 547
            + R+ E+  +  S   D     MPP 
Sbjct: 144 EWKRFIEERLLMYSFVND---KFMPPD 167

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} Length = 223

 Score = 82.1 bits (202), Expect = 7e-18
 Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 17/147 (11%)

Query: 411 VIDGANVGLV--NQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
           VIDG+NV +   N+  FS   +   VN   +   +  + + +    +    P     ++ 
Sbjct: 28  VIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGHTD-ITVFVPSWRKEQPRPDVPITDQH 86

Query: 469 LLDIWRDGGALYTTPPG--------SNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTS 520
           +L        L  TP            DD + +        ++V+ND  RD   +     
Sbjct: 87  ILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE----- 141

Query: 521 FFPRWKEKHQIRLSVSRDGLNLLMPPP 547
               WK   + RL +     +  MPP 
Sbjct: 142 -RQEWKRFIEERLLMYSFVNDKFMPPD 167

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 40/250 (16%), Positives = 70/250 (28%), Gaps = 88/250 (35%)

Query: 280 YE-ILHRLRTLVRQVSESTFKIIED----WFDSVDAAEIGVLNWD-VSKVREGI--VRGG 331
           Y+ ++  ++T  RQ S  T   IE     + D+   A+  V       K+R+ +  +R  
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 332 GG--WHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ- 388
                 G    GSGK                                   + ++   C  
Sbjct: 151 KNVLIDGVL--GSGK-----------------------------------TWVALDVCLS 173

Query: 389 --REVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQM-----S 441
              + + DF  F  WL             N+   N        L  ++ ++         
Sbjct: 174 YKVQCKMDFKIF--WL-------------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 442 PSKRMPLVILH-KGRVSGGPAQIPKNKKLL---DIWRDGGALYTTPPGSNDDWYWLYATV 497
            S  + L I   +  +       P    LL   ++               +   W    +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ--------------NAKAWNAFNL 264

Query: 498 NCKSLLVTND 507
           +CK LL T  
Sbjct: 265 SCKILLTTRF 274

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 60/368 (16%), Positives = 105/368 (28%), Gaps = 94/368 (25%)

Query: 6   FLTPSLIRTSPFLTFLSKISL----PLMHQSNCHTYRSLLCWHMHSFTK-PITDIKQNRF 60
           F+   L     FL  +S I      P M        R  L      F K  ++ ++    
Sbjct: 82  FVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL- 138

Query: 61  SADLTTGLCTLAFSKKSTVNESSAPNTGTM--SNKS--------KKKARRESPEGVLRHK 110
              L   L  L  +K   ++       G +  S K+          K + +    +    
Sbjct: 139 --KLRQALLELRPAKNVLID-------G-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 111 LDMCSKRGDVFEAL-RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE----- 164
           L  C+    V E L +L      N  + S H  N+ L          S +   R      
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-------RIHSIQAELRRLLKSK 241

Query: 165 --NDSNLGL-----KRGFEIF-----------QQMITDKVDPNEATFTSVARLAVAKEDP 206
              +  L L      + +  F            + +TD +     T  S+   ++     
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 207 EMA--FDLVKQMKSFGIPPKLRSYGP---ALFG------FCKLGNTDKAYEVDA--HMGE 253
           E+          +   +P ++ +  P   ++             N       D    + E
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIE 360

Query: 254 SGVVPEEP-ELSALLK-LSV---DAKKVDKVYEIL----------------HRLRTLVRQ 292
           S +   EP E   +   LSV    A     +  ++                H+   + +Q
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 293 VSESTFKI 300
             EST  I
Sbjct: 421 PKESTISI 428

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 44.8 bits (104), Expect = 8e-05
 Identities = 18/176 (10%), Positives = 39/176 (22%), Gaps = 20/176 (11%)

Query: 74  SKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN 133
             +      S    G + + +++       E  L   L     +  +             
Sbjct: 63  RLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQ-LARLLQEAPGKLSLDVEQAPSGQHSQA 121

Query: 134 GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ---QMITDKVDPNE 190
            ++  Q         C                     L     +          +     
Sbjct: 122 QLSGQQQRLLAFFKCC-LLTDQ---------------LPLAHHLLVVHHGQRQKRKLLTL 165

Query: 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
             + +V      +   +    ++  +K  G+ P L SY  AL    +        E
Sbjct: 166 DMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	593
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.81
3v33_A	223	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	99.79
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.77
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.76
3v32_B	185	Ribonuclease ZC3H12A; rossmann-like sandwich fold,	99.76
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.58
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.54
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.49
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.44
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.34
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.31
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.24
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.2
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.19
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.18
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.17
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.15
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.13
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.09
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.08
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.08
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.01
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.0
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.98
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.98
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.91
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.89
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.87
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.86
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.86
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.81
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.78
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.76
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.75
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.72
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.69
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.69
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.67
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.65
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.64
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.63
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.63
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.6
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.59
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.56
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.54
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.54
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.51
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.49
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.4
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.38
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.36
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.36
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.32
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.31
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.3
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.29
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.26
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.26
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.25
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.25
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.24
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.17
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.16
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.14
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.13
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.13
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.1
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.08
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.07
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.06
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.06
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.06
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.01
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.0
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.97
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.94
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.93
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	97.93
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.92
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.89
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.87
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.87
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.87
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.83
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.81
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.81
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	97.79
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.79
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.78
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.77
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.77
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.74
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.73
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.72
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.72
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.66
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.64
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	97.62
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.62
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.61
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	97.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.57
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.51
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.51
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.51
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.5
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.49
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.48
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.45
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.42
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.4
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.4
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.31
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.3
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.29
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.29
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.28
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.27
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.27
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.25
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.25
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.24
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.21
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.2
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.2
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.19
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.17
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.17
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.11
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.11
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.1
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.09
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.03
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.03
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.99
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.99
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.96
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.89
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.88
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.86
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.8
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	96.77
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	96.69
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.69
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	96.67
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.6
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.57
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.42
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.4
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.35
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.3
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.28
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.2
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.16
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.16
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.07
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.0
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.89
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	95.8
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	95.7
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.68
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	95.67
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	95.49
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.45
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.43
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.41
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.29
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.27
2kat_A	115	Uncharacterized protein; NESG, structure, structur	95.1
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	94.85
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	94.56
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.4
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	94.38
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	94.17
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	93.9
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	93.8
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.75
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	93.47
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.25
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.12
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	92.45
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	92.45
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	92.37
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	91.22
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	90.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	89.02
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	89.0
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	88.48
1pc2_A	152	Mitochondria fission protein; unknown function; NM	87.87
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	86.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.75
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	85.1
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	84.44
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	83.46
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	82.29

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.1e-106  Score=871.23  Aligned_cols=486  Identities=72%  Similarity=1.249  Sum_probs=459.9

Q ss_pred             HHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHH
Q 007684           93 KSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK  172 (593)
Q Consensus        93 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~  172 (593)
                      +.+++.....|+.+++.+|++|++.|++++|+++|++|.+.|++||.+|||+||++|+..+.       .....+.|.++
T Consensus        15 ~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~-------~~~~~~~~~l~   87 (501)
T 4g26_A           15 KAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEA-------ATESSPNPGLS   87 (501)
T ss_dssp             ---------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCC-------CSSSSCCHHHH
T ss_pred             HHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCc-------hhhhhhcchHH
Confidence            33444445567778999999999999999999999999999999999999999999998742       23345568899


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684          173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG  252 (593)
Q Consensus       173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~  252 (593)
                      +|+++|++|.+.|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..|||++|.+||+.|++++|.++|++|.
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCC
Q 007684          253 ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGG  332 (593)
Q Consensus       253 ~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~  332 (593)
                      +.|+.||..||++||.+|++.|+.++|.++|++|++.++.|+..||++|+.||++.++...+...|+...+...+...|+
T Consensus       168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~~g~  247 (501)
T 4g26_A          168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGG  247 (501)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTCCBSCCCHHHHHHHHHHHTS
T ss_pred             hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhhhhhhhhhhhhhhhHhccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeee
Q 007684          333 GWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVI  412 (593)
Q Consensus       333 ~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vi  412 (593)
                      ++|+++|++.++|.+..+.|+..|+|..|+..++.++++|.+.+.+...|..++..++..+.++.|++|+++++|||+||
T Consensus       248 ~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~p~d~vI  327 (501)
T 4g26_A          248 GWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVI  327 (501)
T ss_dssp             SCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTSCCCSEEE
T ss_pred             ccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhcCCchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccceecccCCCCChhhHHHHHHHHHhhCCCCCceEEEecCCCcCCCCCCCcchHHHHHHHHhCCcEEeCCCCCCChHHH
Q 007684          413 DGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYW  492 (593)
Q Consensus       413 dg~nv~~~~~~~~~~~~l~~vv~~l~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~DD~~~  492 (593)
                      ||+|||||+++++++.|++.|++.+++..+.++.|||++|++|+.++.+..+++++++++|++.+.+|+||++|||||||
T Consensus       328 DG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~s~DD~~~  407 (501)
T 4g26_A          328 DGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYW  407 (501)
T ss_dssp             EHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEEEEEHHHHTSGGGSSHHHHHHHHHHHHTTCEEEECTTCCHHHHH
T ss_pred             ccchhhccccccccHHHHHHHHHHHHHHhhccCCcEEEeehhhhcccccCCHHHHHHHHHHHhcCeEEeCCCCCCchHHH
Confidence            99999999999999999999999999988889999999999999998888999999999999999999999999999999


Q ss_pred             HHHHHhCCcEEEecchhhccccccccccchhhhhcccEeEEEeec-CceeeeCCCCCccceeccCCCceEecccCCCCCC
Q 007684          493 LYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLE  571 (593)
Q Consensus       493 lyaa~~~~~~~vs~D~~rdh~~~~~~~~~f~~w~~~hq~~~~~~~-~~~~~~~p~~~~~~~q~~~~~~wh~p~~~~~~~~  571 (593)
                      |||||+++|+|||||+||||+|+|+++++|+|||++|||+|++++ +|++|++|+||+++||++++|+|||||++++++|
T Consensus       408 lyAal~~~~~~vsnD~mRdH~f~l~~~~~F~rW~~~hq~~~~~~~~~~~~~~~p~~~~~~~q~~~~~~WHiP~~~~~~~~  487 (501)
T 4g26_A          408 LYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQ  487 (501)
T ss_dssp             HHHHHHHTCEEECCCCCCSGGGGGGTTTHHHHHHHHHEEEEEEETTTEEEEECCCSSCCSCEECTTSCEEEEBCCSCTTT
T ss_pred             HHHHHccCCEEEeccccccchhccCCcHHHHHHHhcCeEEEEecCCCCceeccCCCCceeeeecCCCceEecccCCCCCC
Confidence            999999999999999999999999999999999999999999985 4799999999999999999899999999999999


Q ss_pred             CCCceEEEEeCCcc
Q 007684          572 APRQWLCATRARVK  585 (593)
Q Consensus       572 ~~~~wlc~~~~~~~  585 (593)
                      +|++|||++|.+++
T Consensus       488 ~~~~WlC~~r~~~~  501 (501)
T 4g26_A          488 TSRQWLCAKRSKTP  501 (501)
T ss_dssp             SCCCEEEEEECC--
T ss_pred             CCCeeEeeccCCCC
Confidence            99999999998764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=1.3e-29  Score=272.15  Aligned_cols=204  Identities=12%  Similarity=0.075  Sum_probs=177.5

Q ss_pred             CCChhhHHhhcCCccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCC------
Q 007684           48 FTKPITDIKQNRFSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD------  119 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------  119 (593)
                      +..+...+.++++......  +.+|++|++.|++++|.++|++|.      +.+..++..+||+||.+|++.+.      
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~------~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~   82 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEAR------RNGVQLSQYHYNVLLYVCSLAEAATESSP   82 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHH------HHTCCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HcCCCCCHhHHHHHHHHHHhCCchhhhhh
Confidence            4566677777777654333  888999999999999999996665      46778888899999999997764      


Q ss_pred             ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684          120 ---VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV  196 (593)
Q Consensus       120 ---~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l  196 (593)
                         ++.|.++|++|.+.|+.||..|||+||.+|++.                |++++|.++|++|.+.|+.||..|||+|
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~----------------g~~~~A~~l~~~M~~~g~~Pd~~tyn~l  146 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAK----------------DDPEMAFDMVKQMKAFGIQPRLRSYGPA  146 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHHHcCCCCccceehHH
Confidence               789999999999999999999999999999997                6999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684          197 ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA  273 (593)
Q Consensus       197 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~  273 (593)
                      |.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|++++++|.+.|+.|+..||+.++..++..
T Consensus       147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.81  E-value=7.6e-20  Score=201.07  Aligned_cols=345  Identities=9%  Similarity=-0.058  Sum_probs=267.1

Q ss_pred             ccCCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCC
Q 007684           29 MHQSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRES  102 (593)
Q Consensus        29 ~~~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  102 (593)
                      .+.+++..|+.++..+...     +..++..|.  +..|+..+ ..++.+|.+.|++++|...+..+..        ...
T Consensus        79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~  148 (597)
T 2xpi_A           79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVL--DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--------YNR  148 (597)
T ss_dssp             ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--------GGT
T ss_pred             chHHHHHHHHHHHHHHHHccCchHHHHHHHHHH--hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--------ccc
Confidence            3456788899999988855     666777776  35577777 8999999999999999999966541        145


Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HC--------------CCCCCHHHHHHHHHHHHccCCCCCCC--------
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDDAR-SN--------------GITLSQHHYNVLLYVCSCKCGSESSE--------  159 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~--------------g~~p~~~ty~~ll~~~~~~~~~~~~~--------  159 (593)
                      +..+++.++.+|.+.|++++|+++|+++. ..              |..++..+|+.+..+|.+.+..+.+.        
T Consensus       149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  228 (597)
T 2xpi_A          149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM  228 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            56789999999999999999999999532 22              33446889999999988876543210        


Q ss_pred             ------------------------------------------------CCCCcccccccHHHHHHHHHHHHhCCCCCCHH
Q 007684          160 ------------------------------------------------NGDRENDSNLGLKRGFEIFQQMITDKVDPNEA  191 (593)
Q Consensus       160 ------------------------------------------------~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~  191 (593)
                                                                      .+...+.+.|++++|.++|++|.+.  +++..
T Consensus       229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~  306 (597)
T 2xpi_A          229 VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSD  306 (597)
T ss_dssp             HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHH
T ss_pred             hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHH
Confidence                                                            0145677889999999999998765  58999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007684          192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV  271 (593)
Q Consensus       192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~  271 (593)
                      +++.++.+|.+.|++++|.++|++|.+.+. .+..+|+.++.+|.+.|+.++|.+++++|.+.. ..+..+++.++.+|.
T Consensus       307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  384 (597)
T 2xpi_A          307 LLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYL  384 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence            999999999999999999999999987553 467899999999999999999999999998543 346788999999999


Q ss_pred             hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEec
Q 007684          272 DAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQ  351 (593)
Q Consensus       272 ~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~  351 (593)
                      +.|++++|.++|+++.+.. ..+..++..+...|...+..+.+.      .+.+.+.+.+. .+..         +...+
T Consensus       385 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~~~~~~~-~~~~---------~~~~l  447 (597)
T 2xpi_A          385 CVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI------SAYTTAARLFQ-GTHL---------PYLFL  447 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHTTT-TCSH---------HHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCc-cchH---------HHHHH
Confidence            9999999999999998732 235668888888887766544332      33333332221 1111         22345


Q ss_pred             ccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHh
Q 007684          352 IDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGR  404 (593)
Q Consensus       352 i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~  404 (593)
                      ...+.+++..++|++.++    +.|.+...|..++..|...|+.++|++.|+++++.
T Consensus       448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL  504 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            556667778888888777    55667888999999999999999999999999986

>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}

Probab=99.79  E-value=5.8e-20  Score=168.39  Aligned_cols=127  Identities=22%  Similarity=0.241  Sum_probs=105.4

Q ss_pred             CCcCeeeeccceecccCC--CCChhhHHHHHHHHHhhCCCCCc-eEEEecCCCcCC-CCCCCcchHHHHHHHHhCCcEEe
Q 007684          406 GPFDAVIDGANVGLVNQH--NFSFYQLNTVVNRLRQMSPSKRM-PLVILHKGRVSG-GPAQIPKNKKLLDIWRDGGALYT  481 (593)
Q Consensus       406 ~~~d~vidg~nv~~~~~~--~~~~~~l~~vv~~l~~~~~~~~~-~lv~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  481 (593)
                      ..--+||||+|||++.++  .|+..+|..+|++|.+   .|.. ++|++++.+... ++.....+++++++|.+.+.+++
T Consensus        23 ~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~---RGh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~   99 (223)
T 3v33_A           23 DLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVF   99 (223)
T ss_dssp             CBCCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHT---TTCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEE
T ss_pred             cCCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEE
Confidence            345789999999999876  5788899999999998   3555 567777666543 23334567899999999999999


Q ss_pred             CCCC--------CCChHHHHHHHHhCCcEEEecchhhccccccccccchhhhhcccEeEEEeecC
Q 007684          482 TPPG--------SNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRD  538 (593)
Q Consensus       482 ~~~~--------s~DD~~~lyaa~~~~~~~vs~D~~rdh~~~~~~~~~f~~w~~~hq~~~~~~~~  538 (593)
                      ||.+        ++||+|||++|...++.|||||+||||..   ...-|.+|.+.|++.|+|..+
T Consensus       100 TPs~~v~G~r~~sydD~~iL~~A~~~~g~IVSND~yRD~~~---e~p~~k~~Ie~rlI~ytFv~D  161 (223)
T 3v33_A          100 TPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQG---ERQEWKRFIEERLLMYSFVND  161 (223)
T ss_dssp             ECEEEETTEEEECCHHHHHHHHHHHTTCEEECSCCCHHHHT---TCHHHHHHHHHHEECCEEETT
T ss_pred             CCCCCcCCccccccchHHHHHHHHHcCCEEEeCccHHHHHh---hCHHHHHHHHhCeeeEEEECC
Confidence            9999        89999999999999999999999999985   233588888999999999743

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.78  E-value=1.1e-18  Score=191.86  Aligned_cols=272  Identities=9%  Similarity=-0.032  Sum_probs=178.0

Q ss_pred             cccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 007684           62 ADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQH  140 (593)
Q Consensus        62 ~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  140 (593)
                      ++..+ +.++.+|.+.|++++|...|.+++       ...+.+..+++.++.+|.+.|++++|..+|+++.+.. +.+..
T Consensus       303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~  374 (597)
T 2xpi_A          303 KSSDLLLCKADTLFVRSRFIDVLAITTKIL-------EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV  374 (597)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHH-------HcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence            44455 777777777777777777775554       2223344457777777777777777777777776442 33566


Q ss_pred             HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007684          141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG  220 (593)
Q Consensus       141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g  220 (593)
                      +|+.+..+|.+.                |++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|++|.+.+
T Consensus       375 ~~~~l~~~~~~~----------------g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          375 TWLAVGIYYLCV----------------NKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh----------------ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            777766666665                47777777777776643 3456677777777777777777777777776643


Q ss_pred             CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----cCCCC--
Q 007684          221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL----VRQVS--  294 (593)
Q Consensus       221 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~----~~~~~--  294 (593)
                      - .+..+|+.++.+|.+.|++++|.++|++|.+..- .+..+|+.++.+|.+.|++++|.++|+++.+.    +..|+  
T Consensus       438 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~  515 (597)
T 2xpi_A          438 Q-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW  515 (597)
T ss_dssp             T-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred             c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence            2 3566777777777777777777777777765432 35666777777777777777777777777664    44555  


Q ss_pred             HHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHH
Q 007684          295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRE  374 (593)
Q Consensus       295 ~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~  374 (593)
                      ..++..+...|...+..+.+...+      +.+.                                        .+.|.+
T Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~------~~~~----------------------------------------~~~p~~  549 (597)
T 2xpi_A          516 AATWANLGHAYRKLKMYDAAIDAL------NQGL----------------------------------------LLSTND  549 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHH------HHHH----------------------------------------HHSSCC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHH------HHHH----------------------------------------HhCCCC
Confidence            456666666665544333221111      1111                                        123445


Q ss_pred             HHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684          375 TENFASSLSNLACQREVRSDFNKFQEWLGRHG  406 (593)
Q Consensus       375 ~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~  406 (593)
                      ...|..+...|...|++++|.+.|+++++..+
T Consensus       550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          550 ANVHTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            67788888888888888888888888887654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.77  E-value=3.6e-19  Score=196.70  Aligned_cols=152  Identities=14%  Similarity=0.121  Sum_probs=129.8

Q ss_pred             CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007684          138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT---DKVDPNEATFTSVARLAVAKEDPEMAFDLVK  214 (593)
Q Consensus       138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~---~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~  214 (593)
                      -..|||+||++|++.                |++++|.++|++|.+   .|+.||.+|||+||.+||+.|++++|.++|+
T Consensus       126 ~~~TynaLIdglcK~----------------G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~  189 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLT----------------DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF  189 (1134)
T ss_dssp             HHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC----------------CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHH
Confidence            457999999999987                699999999988764   5899999999999999999999999999999


Q ss_pred             HHHhCCCCCCcccHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 007684          215 QMKSFGIPPKLRSYGPALFGFCKLGNT-DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV  293 (593)
Q Consensus       215 ~m~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~  293 (593)
                      +|++.|+.||..|||++|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+.    .+++.++++ .-+..|
T Consensus       190 eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p  264 (1134)
T 3spa_A          190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSL  264 (1134)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCC
T ss_pred             HHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCC
Confidence            999999999999999999999999985 78999999999999999999999999876554    444444555 334444


Q ss_pred             C------HHHHHHHHHHHhcchh
Q 007684          294 S------ESTFKIIEDWFDSVDA  310 (593)
Q Consensus       294 ~------~~t~~~l~~~~~~~~~  310 (593)
                      +      ..|...|.+.|...+.
T Consensus       265 ~~~~~~~~~t~~LL~dl~s~d~~  287 (1134)
T 3spa_A          265 PPQLPPPVNTSKLLRDVYAKDGR  287 (1134)
T ss_dssp             CCCCCCCCCCCTTTHHHHCCCSC
T ss_pred             CCCCcccccchHHHHHHHccCCC
Confidence            4      4566778888876553

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.76  E-value=6.5e-19  Score=194.69  Aligned_cols=150  Identities=9%  Similarity=-0.001  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARS---NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ  180 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~  180 (593)
                      ..+||+||++||++|++++|.++|++|.+   .|+.||++|||+||.+|++.                |++++|.++|++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~----------------G~~~eA~~Lf~e  190 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ----------------GAFKELVYVLFM  190 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHH----------------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhC----------------CCHHHHHHHHHH
Confidence            34699999999999999999999998874   48999999999999999886                699999999999


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 007684          181 MITDKVDPNEATFTSVARLAVAKEDP-EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE  259 (593)
Q Consensus       181 M~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  259 (593)
                      |++.|+.||.+|||+||.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+-++.    .+++ ..++.|+
T Consensus       191 M~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~----Vrkv-~P~f~p~  265 (1134)
T 3spa_A          191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA----VHKV-KPTFSLP  265 (1134)
T ss_dssp             HHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH----HGGG-CCCCCCC
T ss_pred             HHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH----HHHh-CcccCCC
Confidence            99999999999999999999999985 7899999999999999999999999988777644333    3333 3455554


Q ss_pred             ------HHHHHHHHHHHHhcC
Q 007684          260 ------EPELSALLKLSVDAK  274 (593)
Q Consensus       260 ------~~t~~~Ll~~~~~~g  274 (593)
                            ..|...|.+.|.+.+
T Consensus       266 ~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          266 PQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             CCCCCCCCCCTTTHHHHCCCS
T ss_pred             CCCcccccchHHHHHHHccCC
Confidence                  455566777777655

>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A

Probab=99.76  E-value=5.4e-19  Score=158.53  Aligned_cols=127  Identities=22%  Similarity=0.247  Sum_probs=104.9

Q ss_pred             CCcCeeeeccceecccCC--CCChhhHHHHHHHHHhhCCCCCc-eEEEecCCCcCC-CCCCCcchHHHHHHHHhCCcEEe
Q 007684          406 GPFDAVIDGANVGLVNQH--NFSFYQLNTVVNRLRQMSPSKRM-PLVILHKGRVSG-GPAQIPKNKKLLDIWRDGGALYT  481 (593)
Q Consensus       406 ~~~d~vidg~nv~~~~~~--~~~~~~l~~vv~~l~~~~~~~~~-~lv~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  481 (593)
                      ..--+||||+|||++.++  .|++.+|..+|++|++   .|.. +.|++++.+... ++.....+++++++|.+.+.+++
T Consensus        23 ~lR~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~---rGh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~~   99 (185)
T 3v32_B           23 DLRPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLE---RGHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVF   99 (185)
T ss_dssp             CBCCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TTCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEEE
T ss_pred             CCCeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHH---cCCCceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEEE
Confidence            455789999999999876  6788899999999998   3555 556776665543 23445667899999999999999


Q ss_pred             CCCC--------CCChHHHHHHHHhCCcEEEecchhhccccccccccchhhhhcccEeEEEeecC
Q 007684          482 TPPG--------SNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRD  538 (593)
Q Consensus       482 ~~~~--------s~DD~~~lyaa~~~~~~~vs~D~~rdh~~~~~~~~~f~~w~~~hq~~~~~~~~  538 (593)
                      ||.+        ++||+|||+.|...++.|||||+||||..+   ..-+.+|.+.|++.|+|...
T Consensus       100 TPs~~~~g~~~~~ydD~~il~~A~~~~g~IVSND~~rD~~~~---~p~~k~~Ie~rli~ytFv~d  161 (185)
T 3v32_B          100 TPSRRVGGKRVVCYDDRFIVKLAYESDGIVVSNDTYRDLQGE---RQEWKRFIEERLLMYSFVND  161 (185)
T ss_dssp             ECCCC-------CCHHHHHHHHHHHTTCEEECSCCCHHHHHH---CHHHHHHHHHHEECCEEETT
T ss_pred             CCCcccCCCcccCccHHHHHHHHHHcCCEEEeCccHHHHHhh---CHHHHHHHHhCcceeEEECC
Confidence            9999        899999999999999999999999999752   23466667999999999854

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.58  E-value=3.5e-13  Score=139.57  Aligned_cols=292  Identities=10%  Similarity=0.017  Sum_probs=151.3

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...|.+.|++++|...|.+.+       ...+.....|..+...+.+.|++++|.+.|+++.+.  .|+.......+
T Consensus        71 ~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l  141 (388)
T 1w3b_A           71 SNLGNVYKERGQLQEAIEHYRHAL-------RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDL  141 (388)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH-------HcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            566666666666666666665444       222333445666666666666666666666666654  34433333333


Q ss_pred             -HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-
Q 007684          147 -YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-  224 (593)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-  224 (593)
                       ..|...                |++++|.++|+++.+.. +-+..+|+.+...+...|++++|...|+++.+..  |+ 
T Consensus       142 ~~~~~~~----------------g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~  202 (388)
T 1w3b_A          142 GNLLKAL----------------GRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNF  202 (388)
T ss_dssp             HHHHHTT----------------SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTC
T ss_pred             HHHHHHc----------------cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc
Confidence             244443                46666666666665543 3345556666666666666666666666665522  33 


Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684          225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED  303 (593)
Q Consensus       225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~  303 (593)
                      ...|..+...+...|++++|.+.+++.....  | +..++..+..++.+.|++++|.+.++++.+.. .-++.++..+..
T Consensus       203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  279 (388)
T 1w3b_A          203 LDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLAN  279 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            3445555555555566666655555554322  2 24445555555555566666665555555421 112334444444


Q ss_pred             HHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHH
Q 007684          304 WFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFA  379 (593)
Q Consensus       304 ~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~  379 (593)
                      .+...+..+.+...++.     ++....  .+..         +...+...+...+..++|++.++    +.|.+...+.
T Consensus       280 ~~~~~g~~~~A~~~~~~-----al~~~p--~~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  343 (388)
T 1w3b_A          280 ALKEKGSVAEAEDCYNT-----ALRLCP--THAD---------SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS  343 (388)
T ss_dssp             HHHHHSCHHHHHHHHHH-----HHHHCT--TCHH---------HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH-----HHhhCc--ccHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            55444433333222211     110000  0000         00011111122223333333322    5566677888


Q ss_pred             HHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          380 SSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       380 ~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                      .+...|...|+.++|++.|+++++..
T Consensus       344 ~l~~~~~~~g~~~~A~~~~~~a~~~~  369 (388)
T 1w3b_A          344 NLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            88888888888888999888888754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.54  E-value=1.4e-13  Score=142.58  Aligned_cols=298  Identities=11%  Similarity=0.008  Sum_probs=214.3

Q ss_pred             ccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 007684           61 SADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS  138 (593)
Q Consensus        61 ~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  138 (593)
                      .|+...  ..+...+.+.|++++|...+...+       ...+.....|..+...|.+.|++++|+..|+++.+.  .|+
T Consensus        29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~-------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~   99 (388)
T 1w3b_A           29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI-------KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPD   99 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--Ccc
Confidence            354444  667778889999999998886555       445566778999999999999999999999999876  444


Q ss_pred             -HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684          139 -QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK  217 (593)
Q Consensus       139 -~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~  217 (593)
                       ..+|..+..++...                |++++|.+.|+++.+.. +-+...+..+...+...|++++|.++|+++.
T Consensus       100 ~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A          100 FIDGYINLAAALVAA----------------GDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             CHHHHHHHHHHHHHH----------------SCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence             55788888888776                59999999999998865 4455678888899999999999999999998


Q ss_pred             hCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CH
Q 007684          218 SFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV-SE  295 (593)
Q Consensus       218 ~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~~  295 (593)
                      +.  .|+ ..+|..+...|.+.|+.++|.+.|+++.+.+- -+...|..+...+...|++++|...+++..+.  .| +.
T Consensus       163 ~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~  237 (388)
T 1w3b_A          163 ET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA  237 (388)
T ss_dssp             HH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred             Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence            74  355 57899999999999999999999999987542 24566899999999999999999999998763  34 45


Q ss_pred             HHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CC
Q 007684          296 STFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----ID  371 (593)
Q Consensus       296 ~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~  371 (593)
                      .++..+...+...+..+.+...     +.+++.....  +..         +...+...+...+..++|++.++    +.
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~-----~~~al~~~p~--~~~---------~~~~l~~~~~~~g~~~~A~~~~~~al~~~  301 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDT-----YRRAIELQPH--FPD---------AYCNLANALKEKGSVAEAEDCYNTALRLC  301 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHH-----HHHHHHTCSS--CHH---------HHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHH-----HHHHHhhCCC--CHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            6777777777766644432221     1222211100  000         01112222233344445544444    45


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          372 PRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       372 ~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                      |.+...+..+...+...|+.++|++.|+++++..
T Consensus       302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  335 (388)
T 1w3b_A          302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            5566666666667777777777777777766543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.49  E-value=1.1e-12  Score=138.32  Aligned_cols=303  Identities=7%  Similarity=-0.005  Sum_probs=216.1

Q ss_pred             cccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHH
Q 007684           34 CHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVL  107 (593)
Q Consensus        34 ~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  107 (593)
                      ...+..+...+...     +...+..+.+.. +.+... ..+..+|...|++++|...+.+.+       ...+.....+
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~   97 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI-------QLKMDFTAAR   97 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------hcCCCcHHHH
Confidence            34455555555533     556666666542 223344 888889999999999999997766       3345557779


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684          108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQ----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT  183 (593)
Q Consensus       108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~  183 (593)
                      ..+...|.+.|++++|..+|+++.+.  .|+.    ..+..+...+......    .....+...|++++|.+.|+++.+
T Consensus        98 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~A~~~~~~~~~  171 (450)
T 2y4t_A           98 LQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLR----SQALNAFGSGDYTAAIAFLDKILE  171 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999886  4443    4555553331000000    000011123699999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-
Q 007684          184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE-  262 (593)
Q Consensus       184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-  262 (593)
                      .. +.+..++..+..+|...|++++|.++++++.+.. +.+..+|..+...|.+.|+.++|.+.|+++...  .|+... 
T Consensus       172 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~  247 (450)
T 2y4t_A          172 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRC  247 (450)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred             hC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHH
Confidence            65 5688899999999999999999999999998743 134688999999999999999999999999854  344333 


Q ss_pred             HHHH------------HHHHHhcCCHHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHhcchhhhhccccchhhhHHH
Q 007684          263 LSAL------------LKLSVDAKKVDKVYEILHRLRTLVRQVSE-----STFKIIEDWFDSVDAAEIGVLNWDVSKVRE  325 (593)
Q Consensus       263 ~~~L------------l~~~~~~g~~~~a~~~l~~m~~~~~~~~~-----~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~  325 (593)
                      +..+            ...+.+.|++++|..+|+++.+.  .|+.     ..+..+...+...+..              
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~--------------  311 (450)
T 2y4t_A          248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKP--------------  311 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCH--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCH--------------
Confidence            4444            78899999999999999999873  3442     2334444444333221              


Q ss_pred             hhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 007684          326 GIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEW  401 (593)
Q Consensus       326 ~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~  401 (593)
                                                          ++|++.++    +.|.+...+..+...|...|+.++|.+.|++.
T Consensus       312 ------------------------------------~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  355 (450)
T 2y4t_A          312 ------------------------------------VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA  355 (450)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------------------------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence                                                22222221    34566788999999999999999999999999


Q ss_pred             HHhcC
Q 007684          402 LGRHG  406 (593)
Q Consensus       402 l~~~~  406 (593)
                      ++..+
T Consensus       356 l~~~p  360 (450)
T 2y4t_A          356 QEHNE  360 (450)
T ss_dssp             HTTSS
T ss_pred             HHhCc
Confidence            98543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.44  E-value=3e-12  Score=135.00  Aligned_cols=295  Identities=6%  Similarity=-0.071  Sum_probs=210.5

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...|.+.|++++|...|.+++       ...+.....+..+...|.+.|++++|+..|+++.+.+ +.+...+..+.
T Consensus        30 ~~~~~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  101 (450)
T 2y4t_A           30 LELGKKLLAAGQLADALSQFHAAV-------DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG  101 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH-------HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            778889999999999999997766       3345567779999999999999999999999999874 23567777777


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCChHHHHH
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE---ATFTSV------------ARLAVAKEDPEMAFD  211 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~---~ty~~l------------i~~~~~~g~~~~A~~  211 (593)
                      .+|...                |++++|.+.|+++.+.. +.+.   .++..+            ...+...|++++|.+
T Consensus       102 ~~~~~~----------------g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A          102 HLLLKQ----------------GKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHHHHT----------------TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHc----------------CCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            788876                69999999999999765 3334   555555            444889999999999


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684          212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR  291 (593)
Q Consensus       212 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~  291 (593)
                      +++++.+..- .+..++..+..+|.+.|++++|.++|+++.+.. +.+...+..+..+|...|+.++|...++++.+.  
T Consensus       165 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--  240 (450)
T 2y4t_A          165 FLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--  240 (450)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence            9999987432 356789999999999999999999999998643 245788999999999999999999999999863  


Q ss_pred             CCCHHHH-HHH------------HHHHhcchhhhhccccchh-hhHHHhhhcCCCcccccccccCCceEEEEecccCCCC
Q 007684          292 QVSESTF-KII------------EDWFDSVDAAEIGVLNWDV-SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGV  357 (593)
Q Consensus       292 ~~~~~t~-~~l------------~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~  357 (593)
                      .|+.... ..+            ...+...+       .++. ....+.+.                             
T Consensus       241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------~~~~A~~~~~~~l-----------------------------  284 (450)
T 2y4t_A          241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDG-------RYTDATSKYESVM-----------------------------  284 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHH-----------------------------
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHH-----------------------------
Confidence            3443333 222            22221111       1111 11111111                             


Q ss_pred             cCcccccccccCCCHH-HHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHH
Q 007684          358 CCSCNERLVCIDIDPR-ETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNR  436 (593)
Q Consensus       358 c~~~~~al~~~~l~~~-~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~  436 (593)
                              +...-.+. ....+..+...+...|+.++|++.|+++++..+....+...+-..+...     +..+.+++.
T Consensus       285 --------~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-----~~~~~A~~~  351 (450)
T 2y4t_A          285 --------KTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE-----EMYDEAIQD  351 (450)
T ss_dssp             --------HHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----TCHHHHHHH
T ss_pred             --------hcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-----cCHHHHHHH
Confidence                    10001111 1456778888999999999999999999987543322222333333333     245566666


Q ss_pred             HHh
Q 007684          437 LRQ  439 (593)
Q Consensus       437 l~~  439 (593)
                      +++
T Consensus       352 ~~~  354 (450)
T 2y4t_A          352 YET  354 (450)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.34  E-value=4.3e-11  Score=119.18  Aligned_cols=194  Identities=8%  Similarity=0.018  Sum_probs=152.1

Q ss_pred             CCccccch---HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 007684           59 RFSADLTT---GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGI  135 (593)
Q Consensus        59 g~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  135 (593)
                      ...|+...   -++..+|...|++++|...++.          ...++...+..+...+...++.++|++.++++.+.+.
T Consensus        27 ~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~   96 (291)
T 3mkr_A           27 PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSV   96 (291)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCC
T ss_pred             cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhccc
Confidence            34455432   6778899999999999876622          1122334588889999999999999999999998877


Q ss_pred             CCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007684          136 TLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK  214 (593)
Q Consensus       136 ~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~  214 (593)
                      .|+...+..++. ++...                |++++|++.|++      +.+..++..++..+.+.|++++|.+.++
T Consensus        97 ~P~~~~~~~~la~~~~~~----------------g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~  154 (291)
T 3mkr_A           97 DVTNTTFLLMAASIYFYD----------------QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK  154 (291)
T ss_dssp             CCSCHHHHHHHHHHHHHT----------------TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHC----------------CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            776666555554 66664                699999999987      5788899999999999999999999999


Q ss_pred             HHHhCCCCCCcccHHHHH----HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          215 QMKSFGIPPKLRSYGPAL----FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       215 ~m~~~g~~p~~~ty~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ++.+..  |+.. ...+.    ..+...|+.++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++..+
T Consensus       155 ~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~  228 (291)
T 3mkr_A          155 KMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD  228 (291)
T ss_dssp             HHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            998753  6643 22233    3334458999999999999875 345777899999999999999999999999876

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.31  E-value=5.3e-11  Score=119.28  Aligned_cols=272  Identities=6%  Similarity=-0.068  Sum_probs=199.2

Q ss_pred             ccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 007684           61 SADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ  139 (593)
Q Consensus        61 ~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  139 (593)
                      +.+... ..+...+...|++++|...+.+++       ...+.....+..++..+...|++++|..+++++.+.. +-+.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~   90 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVM-------EKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNP   90 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTST
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCH
Confidence            334444 677778888899999999997766       3334444557778888899999999999999998763 2245


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCCCcccccc-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          140 HHYNVLLYVCSCKCGSESSENGDRENDSNL-GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       140 ~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      ..|..+-..+...                | ++++|.+.|++..+.. +.+..++..+...+...|++++|.+.+++..+
T Consensus        91 ~~~~~l~~~~~~~----------------~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  153 (330)
T 3hym_B           91 VSWFAVGCYYLMV----------------GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ  153 (330)
T ss_dssp             HHHHHHHHHHHHS----------------CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh----------------hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            5666666666664                6 8999999999998766 45677899999999999999999999999987


Q ss_pred             CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC-------
Q 007684          219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR-------  291 (593)
Q Consensus       219 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~-------  291 (593)
                      ..- .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+...       
T Consensus       154 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  231 (330)
T 3hym_B          154 LMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT  231 (330)
T ss_dssp             HTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred             hcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc
Confidence            432 235677789999999999999999999998654 23567789999999999999999999999876421       


Q ss_pred             -CCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCC
Q 007684          292 -QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDI  370 (593)
Q Consensus       292 -~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l  370 (593)
                       ......+..+...+...+..+.+..     .+.+.+                                         .+
T Consensus       232 ~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~a~-----------------------------------------~~  265 (330)
T 3hym_B          232 VDKWEPLLNNLGHVCRKLKKYAEALD-----YHRQAL-----------------------------------------VL  265 (330)
T ss_dssp             TTTCCHHHHHHHHHHHHTTCHHHHHH-----HHHHHH-----------------------------------------HH
T ss_pred             ccHHHHHHHHHHHHHHHhcCHHHHHH-----HHHHHH-----------------------------------------hh
Confidence             2223455555555543332221111     111111                                         12


Q ss_pred             CHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          371 DPRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       371 ~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                      .|.+...+..+...|...|+.++|.+.|++.++..
T Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (330)
T 3hym_B          266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR  300 (330)
T ss_dssp             STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred             CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence            34455677888888999999999999999877644

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.24  E-value=4.9e-12  Score=130.39  Aligned_cols=253  Identities=9%  Similarity=-0.011  Sum_probs=104.3

Q ss_pred             cCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 007684           75 KKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG  154 (593)
Q Consensus        75 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~  154 (593)
                      +.|++++|.+.++++-            ++.+|..|..++.+.|++++|++.|.+.      +|..+|..++..|...  
T Consensus        15 ~~~~ld~A~~fae~~~------------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~--   74 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS--   74 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC--
Confidence            6677899999984332            3358999999999999999999999753      5778898888877775  


Q ss_pred             CCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 007684          155 SESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG  234 (593)
Q Consensus       155 ~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~  234 (593)
                                    |++++|+..++...+.  .++..+.+.++.+|++.|+++++.++++       .|+..+|+.+...
T Consensus        75 --------------g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~  131 (449)
T 1b89_A           75 --------------GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR  131 (449)
T ss_dssp             --------------------------------------------------CHHHHTTTTT-------CC-----------
T ss_pred             --------------CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHH
Confidence                          6999999988777764  5668889999999999999999998885       3788899999999


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhc
Q 007684          235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG  314 (593)
Q Consensus       235 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~  314 (593)
                      |...|.+++|...|..+         ..|..|..++.+.|++++|.+.++++      .++.++..+..+|...+..+.+
T Consensus       132 ~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA  196 (449)
T 1b89_A          132 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA  196 (449)
T ss_dssp             -----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence            99999999999999987         36999999999999999999999998      3688999998888554432211


Q ss_pred             cccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHh
Q 007684          315 VLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSD  394 (593)
Q Consensus       315 ~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a  394 (593)
                                                                  ..|+..   +...|.+   ...++..|.+.|..+++
T Consensus       197 --------------------------------------------~~~~l~---L~~~ad~---l~~lv~~Yek~G~~eEa  226 (449)
T 1b89_A          197 --------------------------------------------QMCGLH---IVVHADE---LEELINYYQDRGYFEEL  226 (449)
T ss_dssp             --------------------------------------------HHTTTT---TTTCHHH---HHHHHHHHHHTTCHHHH
T ss_pred             --------------------------------------------HHHHHH---HHhCHhh---HHHHHHHHHHCCCHHHH
Confidence                                                        112222   2245555   34688999999999999


Q ss_pred             HHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHH
Q 007684          395 FNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLR  438 (593)
Q Consensus       395 ~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~  438 (593)
                      +.+++.-+.....-.-+..++.+.|...   +++.+.+-++.+.
T Consensus       227 i~lLe~aL~le~ah~~~ftel~il~~ky---~p~k~~ehl~~~~  267 (449)
T 1b89_A          227 ITMLEAALGLERAHMGMFTELAILYSKF---KPQKMREHLELFW  267 (449)
T ss_dssp             HHHHHHHTTSTTCCHHHHHHHHHHHHTT---CHHHHHHHHHHHS
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHH
Confidence            9999998865544455556666666544   3444544444444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.20  E-value=5.2e-10  Score=113.20  Aligned_cols=258  Identities=7%  Similarity=0.005  Sum_probs=192.6

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC----CHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL----SQHHY  142 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~ty  142 (593)
                      ..+...|...|++++|...+.+.+       ...+.....+..+...+.+.|++++|...|+++.+.  .|    +...+
T Consensus        41 ~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~  111 (359)
T 3ieg_A           41 YRRATVFLAMGKSKAALPDLTKVI-------ALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAE  111 (359)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHH-------HhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHH
Confidence            778888999999999999997666       334456677999999999999999999999999876  44    33333


Q ss_pred             HHH------------HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007684          143 NVL------------LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF  210 (593)
Q Consensus       143 ~~l------------l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~  210 (593)
                      ..+            ...+...                |++++|.++|+++.+.. +.+..++..+...+...|++++|.
T Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~----------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~  174 (359)
T 3ieg_A          112 SQLVKADEMQRLRSQALDAFDG----------------ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAI  174 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence            333            1344443                69999999999998876 567889999999999999999999


Q ss_pred             HHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHH------------HHHHHHHhcCCHH
Q 007684          211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELS------------ALLKLSVDAKKVD  277 (593)
Q Consensus       211 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~------------~Ll~~~~~~g~~~  277 (593)
                      ..+++..+.. +.+..++..+...|...|+.++|.+.+++..+..  |+ ...+.            .+...+.+.|+++
T Consensus       175 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  251 (359)
T 3ieg_A          175 SDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT  251 (359)
T ss_dssp             HHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            9999998753 2346788999999999999999999999988643  33 22222            2366688999999


Q ss_pred             HHHHHHHHHHHccCCCCHHH-----HHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecc
Q 007684          278 KVYEILHRLRTLVRQVSEST-----FKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQI  352 (593)
Q Consensus       278 ~a~~~l~~m~~~~~~~~~~t-----~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i  352 (593)
                      +|...++++.+..  |+...     +..+...+...+.       ++                                 
T Consensus       252 ~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~-------~~---------------------------------  289 (359)
T 3ieg_A          252 DATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEK-------PV---------------------------------  289 (359)
T ss_dssp             HHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTC-------HH---------------------------------
T ss_pred             HHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccC-------HH---------------------------------
Confidence            9999999998743  33221     1122223322221       11                                 


Q ss_pred             cCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          353 DENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       353 ~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                                +|++.++    +.|.+...+..+...|...|+.++|.+.|++.++..
T Consensus       290 ----------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          290 ----------EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             ----------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             ----------HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence                      1221111    345567788888899999999999999999998764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.19  E-value=1.3e-09  Score=111.20  Aligned_cols=265  Identities=11%  Similarity=0.003  Sum_probs=181.5

Q ss_pred             HHhcCCCcccCCC-CcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007684           72 AFSKKSTVNESSA-PNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS  150 (593)
Q Consensus        72 ~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~  150 (593)
                      ++...|++++|.. .+.+.+.. .  ..........+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+-.++.
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  109 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQF-E--EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA  109 (368)
T ss_dssp             ------------CHHHHCCCCC-C--SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhhhHHHhc-C--CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            4555677888887 66554411 0  00011112347788899999999999999999999874 235667777777777


Q ss_pred             ccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-ccHH
Q 007684          151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-RSYG  229 (593)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~  229 (593)
                      ..                |++++|.+.|+++.+.. +.+..++..+...+...|++++|.+.++++.+..  |+. ..+.
T Consensus       110 ~~----------------g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~  170 (368)
T 1fch_A          110 EN----------------EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVT  170 (368)
T ss_dssp             HT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC
T ss_pred             HC----------------cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHH
Confidence            75                69999999999998876 5688899999999999999999999999998743  332 2222


Q ss_pred             H---------------HHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 007684          230 P---------------ALFGFCKLGNTDKAYEVDAHMGESGVV-PEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV  293 (593)
Q Consensus       230 ~---------------li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~  293 (593)
                      .               .+..+...|++++|.+.++++.+..-. ++...+..+...|...|++++|...++++.+.. ..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~  249 (368)
T 1fch_A          171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN  249 (368)
T ss_dssp             ---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence            1               244444999999999999999864322 257889999999999999999999999987742 22


Q ss_pred             CHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHH
Q 007684          294 SESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPR  373 (593)
Q Consensus       294 ~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~  373 (593)
                      +...+..+...+...+..+.+...     +.++                                         +.+.|.
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~-----~~~a-----------------------------------------l~~~~~  283 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAA-----YRRA-----------------------------------------LELQPG  283 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHH-----HHHH-----------------------------------------HHHCTT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHH-----HHHH-----------------------------------------HHhCCC
Confidence            345555555555443322211111     1111                                         113345


Q ss_pred             HHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684          374 ETENFASSLSNLACQREVRSDFNKFQEWLGRHG  406 (593)
Q Consensus       374 ~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~  406 (593)
                      +...+..+...|...|+.++|.+.|++.++..+
T Consensus       284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  316 (368)
T 1fch_A          284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQR  316 (368)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            567888888999999999999999999988643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.18  E-value=2.3e-09  Score=103.13  Aligned_cols=197  Identities=10%  Similarity=0.023  Sum_probs=163.2

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...|...|++++|...+.+.+       ...+.....+..+...|.+.|++++|.++|+++.+.. +.+...+..+.
T Consensus        41 ~~~a~~~~~~~~~~~A~~~~~~al-------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la  112 (252)
T 2ho1_A           41 IQLGLGYLQRGNTEQAKVPLRKAL-------EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG  112 (252)
T ss_dssp             HHHHHHHHHTTCTGGGHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHH-------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence            677778999999999999997666       3334556779999999999999999999999988764 22567777777


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL  225 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  225 (593)
                      ..|...                |++++|.++|+++...+..| +...+..+...+...|++++|.+.+++..+..- .+.
T Consensus       113 ~~~~~~----------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~  175 (252)
T 2ho1_A          113 GFLYEQ----------------KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQP  175 (252)
T ss_dssp             HHHHHT----------------TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCH
T ss_pred             HHHHHH----------------hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccH
Confidence            777775                59999999999998743445 556888899999999999999999999987432 246


Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      ..+..+...|.+.|+.++|.+.++++.+.. ..+...+..+...+...|+.++|.++++++.+.
T Consensus       176 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          176 SVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            788889999999999999999999988643 245667888999999999999999999999773

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.18  E-value=7.2e-10  Score=113.33  Aligned_cols=235  Identities=11%  Similarity=-0.024  Sum_probs=174.2

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      ..+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+-..|...                |++++|.+.|+++.+.
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~~  128 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAEN----------------ENEQAAIVALQRCLEL  128 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHhc
Confidence            347888899999999999999999998764 33677788777788776                6999999999999887


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-----------LRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----------~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      . +.+..++..+..+|...|++++|.+.++++.+..  |+           ...+..+...|.+.|++++|.+.++++.+
T Consensus       129 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  205 (365)
T 4eqf_A          129 Q-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH  205 (365)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            5 5578899999999999999999999999997632  33           22334458899999999999999999987


Q ss_pred             CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCC
Q 007684          254 SGVV-PEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGG  332 (593)
Q Consensus       254 ~g~~-p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~  332 (593)
                      ..-. ++...+..+...|...|++++|.+.+++..+.. ..+..++..+...|...+..+.+...     +.+       
T Consensus       206 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~-----~~~-------  272 (365)
T 4eqf_A          206 QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEA-----YTR-------  272 (365)
T ss_dssp             HSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH-----HHH-------
T ss_pred             hCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH-----HHH-------
Confidence            5422 267889999999999999999999999998742 22455666666666444332211111     111       


Q ss_pred             cccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684          333 GWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG  406 (593)
Q Consensus       333 ~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~  406 (593)
                                                        .+.+.|.+...+..+...|...|+.++|.+.|++.++..+
T Consensus       273 ----------------------------------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  312 (365)
T 4eqf_A          273 ----------------------------------ALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR  312 (365)
T ss_dssp             ----------------------------------HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             ----------------------------------HHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence                                              1113455677888899999999999999999999988643

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.17  E-value=4.4e-09  Score=106.29  Aligned_cols=196  Identities=8%  Similarity=-0.071  Sum_probs=159.8

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...+...|++++|...+.+.+       ...+.....+..+...+...|++++|+..|+++.+.. +-+...|..+-
T Consensus         7 ~~~~~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   78 (359)
T 3ieg_A            7 LELGKKLLAAGQLADALSQFHAAV-------DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-------hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence            456667889999999999997776       3345566789999999999999999999999998763 22556676666


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC---CCHHHHHHH------------HHHHHhcCChHHHHH
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD---PNEATFTSV------------ARLAVAKEDPEMAFD  211 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~---p~~~ty~~l------------i~~~~~~g~~~~A~~  211 (593)
                      .++...                |++++|.+.|++..+.. +   .+...+..+            ...+...|++++|.+
T Consensus        79 ~~~~~~----------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  141 (359)
T 3ieg_A           79 HLLLKQ----------------GKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT  141 (359)
T ss_dssp             HHHHHH----------------TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHc----------------CChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            677775                59999999999998764 2   244455544            578899999999999


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       212 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      +++++.+..- .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.
T Consensus       142 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  217 (359)
T 3ieg_A          142 FLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL  217 (359)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9999987432 346788889999999999999999999998653 346677999999999999999999999999763

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.16  E-value=2.2e-09  Score=100.86  Aligned_cols=197  Identities=11%  Similarity=0.012  Sum_probs=147.4

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...+...|++++|...+.+.+       ...+.....+..+...|...|++++|..+|+++.+.. +.+..++..+.
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~   83 (225)
T 2vq2_A           12 TQLAMEYMRGQDYRQATASIEDAL-------KSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHH-------HhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            666777888888888888886555       3334456678888888888899999999988887653 22556666666


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN-EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-  224 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-  224 (593)
                      ..+....               |++++|.+.|+++.+.+..|+ ..++..+...+...|++++|...++++.+..  |+ 
T Consensus        84 ~~~~~~~---------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~  146 (225)
T 2vq2_A           84 WFLCGRL---------------NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQF  146 (225)
T ss_dssp             HHHHTTT---------------CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC
T ss_pred             HHHHHhc---------------CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence            6666640               388899999988887333343 5678888888888999999999998887643  43 


Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ...+..+...|.+.|+.++|.+.+++..+..-..+...+..+...+...|+.+.+..+++.+.+
T Consensus       147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          147 PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            5677888888888999999999888887643223566677777778888888888888888765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.15  E-value=3.2e-09  Score=101.30  Aligned_cols=195  Identities=14%  Similarity=0.077  Sum_probs=151.6

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...+...|++++|...+.+.+       ...+.....+..+...+.+.|++++|+..|+++.+.. +.+...+..+.
T Consensus        27 ~~~a~~~~~~~~~~~A~~~~~~~l-------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           27 GQQMGRGSEFGDYEKAAEAFTKAI-------EENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             ---------------CCTTHHHHH-------TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHH-------HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            455667889999999999997766       3344556778999999999999999999999988763 23567777777


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR  226 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  226 (593)
                      ..|...                |++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+..- .+..
T Consensus        99 ~~~~~~----------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~  160 (243)
T 2q7f_A           99 NVYVVK----------------EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTE  160 (243)
T ss_dssp             HHHHHT----------------TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHH
T ss_pred             HHHHHh----------------ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHH
Confidence            777775                59999999999998866 56788899999999999999999999999987432 3467


Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .+..+...|.+.|+.++|.+.+++..... ..+...+..+..+|...|+.++|.+.++++.+
T Consensus       161 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          161 ARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            88889999999999999999999988653 23567799999999999999999999999977

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.15  E-value=3.3e-10  Score=121.15  Aligned_cols=300  Identities=10%  Similarity=-0.014  Sum_probs=208.0

Q ss_pred             CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007684           48 FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRL  126 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l  126 (593)
                      +...+..+.+..  |+... ..+..+|.+.|++++|...+.+.+       ...+.....+..+..+|.+.|++++|...
T Consensus        25 A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   95 (514)
T 2gw1_A           25 AIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKAL-------ELKPDYSKVLLRRASANEGLGKFADAMFD   95 (514)
T ss_dssp             HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------HHCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh-------ccChHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            445555555554  56666 888899999999999999997666       33455667899999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHccC----CCCCC-----------------------------------------C--
Q 007684          127 YDDARSNGITLSQHHYNVLLYVCSCKC----GSESS-----------------------------------------E--  159 (593)
Q Consensus       127 ~~~m~~~g~~p~~~ty~~ll~~~~~~~----~~~~~-----------------------------------------~--  159 (593)
                      |+++.+.+- ++......++..+....    ..+..                                         .  
T Consensus        96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (514)
T 2gw1_A           96 LSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE  174 (514)
T ss_dssp             HHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred             HHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence            999987752 22222222222111100    00000                                         0  


Q ss_pred             -CC--C----------------CcccccccHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHHHHhcCChH
Q 007684          160 -NG--D----------------RENDSNLGLKRGFEIFQQMIT-----DKV--------DPNEATFTSVARLAVAKEDPE  207 (593)
Q Consensus       160 -~~--~----------------~~~~~~g~~~~a~~l~~~M~~-----~g~--------~p~~~ty~~li~~~~~~g~~~  207 (593)
                       ..  +                -.+.+.|++++|.++|+++.+     ..-        +.+..++..+...+...|+++
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (514)
T 2gw1_A          175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL  254 (514)
T ss_dssp             CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence             00  0                001136899999999999987     311        223567888999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684          208 MAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       208 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~  287 (593)
                      +|..+++++.+..  |+..+|..+...|...|++++|.+.++++....- .+...+..+...+...|++++|...+++..
T Consensus       255 ~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  331 (514)
T 2gw1_A          255 GAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAK  331 (514)
T ss_dssp             HHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999999998754  4477888899999999999999999999986542 355678999999999999999999999998


Q ss_pred             HccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccc
Q 007684          288 TLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVC  367 (593)
Q Consensus       288 ~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~  367 (593)
                      +.... +...+..+...+...+..+.+.      ...+.+.                                       
T Consensus       332 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~------~~~~~~~---------------------------------------  365 (514)
T 2gw1_A          332 ELDPE-NIFPYIQLACLAYRENKFDDCE------TLFSEAK---------------------------------------  365 (514)
T ss_dssp             HTCSS-CSHHHHHHHHHTTTTTCHHHHH------HHHHHHH---------------------------------------
T ss_pred             HhChh-hHHHHHHHHHHHHHcCCHHHHH------HHHHHHH---------------------------------------
Confidence            74322 3344555555443333222111      1111111                                       


Q ss_pred             cCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCC
Q 007684          368 IDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGP  407 (593)
Q Consensus       368 ~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~  407 (593)
                       ...|.+...+..+...|...|+.++|...|++.++..+.
T Consensus       366 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          366 -RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             -HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             -HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence             122334567778888899999999999999999886543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.13  E-value=2.6e-09  Score=106.78  Aligned_cols=232  Identities=11%  Similarity=-0.083  Sum_probs=175.9

Q ss_pred             CCChhhHHhhcCCccccc-h-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCC-CHHHHH
Q 007684           48 FTKPITDIKQNRFSADLT-T-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRG-DVFEAL  124 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~  124 (593)
                      +...+..+.+..  |+.. . ..++..+...|++++|...+.+.+       ...+.....+..+...+...| ++++|.
T Consensus        41 A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~A~  111 (330)
T 3hym_B           41 CYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLV-------DLYPSNPVSWFAVGCYYLMVGHKNEHAR  111 (330)
T ss_dssp             HHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH-------HHCTTSTHHHHHHHHHHHHSCSCHHHHH
T ss_pred             HHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHH-------HhCcCCHHHHHHHHHHHHHhhhhHHHHH
Confidence            555555555443  3333 3 667788899999999999997666       334445667888899999999 999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684          125 RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE  204 (593)
Q Consensus       125 ~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g  204 (593)
                      ..|+++.+..- .+...|..+-..+...                |++++|.+.|++..+.. +.+..++..+...+...|
T Consensus       112 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B          112 RYLSKATTLEK-TYGPAWIAYGHSFAVE----------------SEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHTTCT-TCTHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCC-ccHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence            99999987642 2456677777777775                59999999999998765 445667778999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCH
Q 007684          205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG--------VVPEEPELSALLKLSVDAKKV  276 (593)
Q Consensus       205 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~Ll~~~~~~g~~  276 (593)
                      ++++|.+.+++..+..- .+..++..+...|.+.|++++|.+.+++.....        .......+..+..++...|++
T Consensus       174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            99999999999987431 336788889999999999999999999987531        133456789999999999999


Q ss_pred             HHHHHHHHHHHHccCCCCHHHHHHHHHHHhcc
Q 007684          277 DKVYEILHRLRTLVRQVSESTFKIIEDWFDSV  308 (593)
Q Consensus       277 ~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~  308 (593)
                      ++|...+++..+... -+...+..+...+...
T Consensus       253 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~  283 (330)
T 3hym_B          253 AEALDYHRQALVLIP-QNASTYSAIGYIHSLM  283 (330)
T ss_dssp             HHHHHHHHHHHHHST-TCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCc-cchHHHHHHHHHHHHh
Confidence            999999999887432 2344555555555433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.13  E-value=1.3e-09  Score=111.51  Aligned_cols=224  Identities=7%  Similarity=-0.079  Sum_probs=155.7

Q ss_pred             CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007684           48 FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRL  126 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l  126 (593)
                      +...+..+.+.. +.+... ..+...|.+.|++++|...|.+.+       ...+.....+..+...|.+.|++++|+.+
T Consensus        84 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  155 (365)
T 4eqf_A           84 TILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCL-------ELQPNNLKALMALAVSYTNTSHQQDACEA  155 (365)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHccccHHHHHHH
Confidence            444555544432 112233 777777888888888888876555       22344456677788888888888888888


Q ss_pred             HHHHHHCCCCCCHH-HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC
Q 007684          127 YDDARSNGITLSQH-HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD-PNEATFTSVARLAVAKE  204 (593)
Q Consensus       127 ~~~m~~~g~~p~~~-ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g  204 (593)
                      |+++.+..  |+.. .+..+.      +.......+...+...|++++|.++|+++.+.... ++..++..+...+...|
T Consensus       156 ~~~al~~~--p~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g  227 (365)
T 4eqf_A          156 LKNWIKQN--PKYKYLVKNKK------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG  227 (365)
T ss_dssp             HHHHHHHC--HHHHCC-------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhC--ccchHHHhhhc------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence            88777642  2211 111110      00000001112334458999999999999886522 26889999999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007684          205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH  284 (593)
Q Consensus       205 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~  284 (593)
                      ++++|.+.+++..+..- .+..+|..+..+|.+.|++++|.+.|++..+.. +.+...+..+..+|...|++++|...|+
T Consensus       228 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~  305 (365)
T 4eqf_A          228 EFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFL  305 (365)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999987431 346789999999999999999999999998653 2246779999999999999999999999


Q ss_pred             HHHHc
Q 007684          285 RLRTL  289 (593)
Q Consensus       285 ~m~~~  289 (593)
                      +..+.
T Consensus       306 ~al~~  310 (365)
T 4eqf_A          306 TALSL  310 (365)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98763

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.12  E-value=1.9e-09  Score=109.91  Aligned_cols=251  Identities=9%  Similarity=-0.072  Sum_probs=166.9

Q ss_pred             CCChhhHHhhcCCccccc-h-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 007684           48 FTKPITDIKQNRFSADLT-T-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALR  125 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  125 (593)
                      +...+..+.+..  |+.. . ..+...|...|++++|...+.+.+       ...+.....+..+...|...|++++|+.
T Consensus        83 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~  153 (368)
T 1fch_A           83 AVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCL-------ELKPDNQTALMALAVSFTNESLQRQACE  153 (368)
T ss_dssp             HHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            444444444432  3222 3 666677777777777777775554       2234455567777777777778888877


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcC
Q 007684          126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD-PNEATFTSVARLAVAKE  204 (593)
Q Consensus       126 l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g  204 (593)
                      .|+++.+.... +...+..+-... ...........+..+...|++++|.+.|+++.+.... ++..++..+...+...|
T Consensus       154 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g  231 (368)
T 1fch_A          154 ILRDWLRYTPA-YAHLVTPAEEGA-GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG  231 (368)
T ss_dssp             HHHHHHHTSTT-TGGGCC----------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHh-hhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence            77777765311 111111000000 0000000000011112347999999999999876522 15889999999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007684          205 DPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL  283 (593)
Q Consensus       205 ~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l  283 (593)
                      ++++|...++++.+..  |+ ..+|..+...|.+.|++++|.+.|+++.+.. +.+...+..+..+|.+.|++++|...+
T Consensus       232 ~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  308 (368)
T 1fch_A          232 EYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHF  308 (368)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999998743  44 6789999999999999999999999988643 235677999999999999999999999


Q ss_pred             HHHHHccCCC----------CHHHHHHHHHHHhcchhhh
Q 007684          284 HRLRTLVRQV----------SESTFKIIEDWFDSVDAAE  312 (593)
Q Consensus       284 ~~m~~~~~~~----------~~~t~~~l~~~~~~~~~~~  312 (593)
                      ++..+.....          ...++..+...+...+..+
T Consensus       309 ~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  347 (368)
T 1fch_A          309 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  347 (368)
T ss_dssp             HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence            9987632221          1567777777776655444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.11  E-value=4e-09  Score=99.79  Aligned_cols=164  Identities=15%  Similarity=0.022  Sum_probs=140.2

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      +...+..+-..+.+.|++++|+..|++..+.. +-+...+..+-.++...                |++++|++.|++..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~----------------g~~~~A~~~~~~al   66 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKL----------------GLVNPALENGKTLV   66 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHH
Confidence            34567888889999999999999999998763 22455666555666665                69999999999998


Q ss_pred             hCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684          183 TDKVDPNEATFTSVARLAVAK-----------EDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAH  250 (593)
Q Consensus       183 ~~g~~p~~~ty~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~  250 (593)
                      +.. +-+..++..+..++...           |++++|...+++..+.  .|+ ...+..+-..|...|+.++|.+.|++
T Consensus        67 ~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~  143 (217)
T 2pl2_A           67 ART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQ  143 (217)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            876 55778999999999999           9999999999999874  365 56788899999999999999999999


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          251 MGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       251 m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ..+..  .+...+..+..+|...|++++|...+++..+
T Consensus       144 al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  179 (217)
T 2pl2_A          144 ALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALE  179 (217)
T ss_dssp             HHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99877  6888899999999999999999999999876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.11  E-value=1.3e-08  Score=97.91  Aligned_cols=165  Identities=10%  Similarity=0.007  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      ..+..+...+...|++++|..+|+++.+.. +.+...+..+...|...                |++++|.+.|+++.+.
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~a~~~  100 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTE----------------MEPKLADEEYRKALAS  100 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHH
Confidence            348888899999999999999999988763 23566777777777775                5999999999999876


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPEL  263 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  263 (593)
                      . +.+..++..+...+...|++++|.++++++.+.+..|+ ...+..+...|.+.|++++|.+.+++..+.. ..+...+
T Consensus       101 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~  178 (252)
T 2ho1_A          101 D-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVA  178 (252)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred             C-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHH
Confidence            5 45788999999999999999999999999987444454 5678889999999999999999999988654 2356778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          264 SALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       264 ~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ..+...+...|+.++|..+++++.+
T Consensus       179 ~~la~~~~~~g~~~~A~~~~~~~~~  203 (252)
T 2ho1_A          179 LEMADLLYKEREYVPARQYYDLFAQ  203 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8999999999999999999998865

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.11  E-value=1.3e-09  Score=103.28  Aligned_cols=203  Identities=10%  Similarity=-0.060  Sum_probs=148.9

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~l  145 (593)
                      ..+-..+.+.|++++|...+++.+       ...+.....+..+-..+.+.|++++|+..|++..+.  .| +...+..+
T Consensus         9 ~~lg~~~~~~g~~~~A~~~~~~al-------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            9 LRLGVQLYALGRYDAALTLFERAL-------KENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-------TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            667778999999999999997666       445566777999999999999999999999999877  34 44555555


Q ss_pred             HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684          146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL  225 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  225 (593)
                      -.++...+..     ........|++++|.+.|++..+.. +-+..++..+..++...|++++|...|++..+..  .+.
T Consensus        80 g~~~~~~~~~-----~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~  151 (217)
T 2pl2_A           80 SEAYVALYRQ-----AEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP  151 (217)
T ss_dssp             HHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred             HHHHHHhhhh-----hhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence            5555553000     0000001169999999999998865 4567889999999999999999999999998876  677


Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684          226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~  287 (593)
                      ..+..+..+|...|+.++|.+.|++..+.. +-+...+..+..++...|+.++|.+.+++..
T Consensus       152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          152 EIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            888999999999999999999999998643 1245668889999999999999999888764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.11  E-value=5e-10  Score=111.97  Aligned_cols=273  Identities=8%  Similarity=-0.061  Sum_probs=175.1

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...+...|++++|...+.+.+       ...+.....+..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus        25 ~~~a~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la   96 (327)
T 3cv0_A           25 MEEGLSMLKLANLAEAALAFEAVC-------QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA   96 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence            456677889999999999996666       3344566778889999999999999999999988763 23566777776


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHH
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV--------------AR-LAVAKEDPEMAFD  211 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l--------------i~-~~~~~g~~~~A~~  211 (593)
                      ..|...                |++++|.+.|+++.... +.+...+..+              .. .+...|++++|.+
T Consensus        97 ~~~~~~----------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  159 (327)
T 3cv0_A           97 VSHTNE----------------HNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRT  159 (327)
T ss_dssp             HHHHHT----------------TCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHH
T ss_pred             HHHHHc----------------CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence            777765                57888888888877654 2222222222              22 2666777888888


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684          212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR  291 (593)
Q Consensus       212 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~  291 (593)
                      +++++.+..- .+..++..+...|.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. 
T Consensus       160 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-  236 (327)
T 3cv0_A          160 LLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-  236 (327)
T ss_dssp             HHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence            8888776432 245677777788888888888888888877543 2345667778888888888888888888776632 


Q ss_pred             CCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCC--cccccccccCCceEEEEecccCCCCcCcccccccccC
Q 007684          292 QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGG--GWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID  369 (593)
Q Consensus       292 ~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~--~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~  369 (593)
                      ..+...+..+...+...+..+.+..     .+.+.+.....  ...+.                               .
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~-----~~~~a~~~~~~~~~~~~~-------------------------------~  280 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAK-----QLVRAIYMQVGGTTPTGE-------------------------------A  280 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHHTTSCC------------------------------------
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHH-----HHHHHHHhCCcccccccc-------------------------------c
Confidence            1234455555555543332221111     11111110000  00000                               0


Q ss_pred             CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHH
Q 007684          370 IDPRETENFASSLSNLACQREVRSDFNKFQEWLG  403 (593)
Q Consensus       370 l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~  403 (593)
                      ....+...+..+...+...|+.++|.+.+++.++
T Consensus       281 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          281 SREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE  314 (327)
T ss_dssp             CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred             hhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            0012567788888999999999999998876544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.09  E-value=9.1e-09  Score=109.83  Aligned_cols=264  Identities=11%  Similarity=-0.070  Sum_probs=181.0

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      ..+..+-..+.+.|++++|+..|+++.+..  |+..+|..+..+|...                |++++|.+.|+++.+.
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~----------------g~~~~A~~~~~~al~~   68 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSV----------------GDLKKVVEMSTKALEL   68 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH----------------hhHHHHHHHHHHHhcc
Confidence            347778888999999999999999999874  7988888888888876                6999999999999887


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----------------------------------------
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK----------------------------------------  224 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------------------------------  224 (593)
                      + +.+..++..+..++...|++++|...|+++...+- ++                                        
T Consensus        69 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  146 (514)
T 2gw1_A           69 K-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ  146 (514)
T ss_dssp             C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred             C-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence            6 56778999999999999999999999999876442 11                                        


Q ss_pred             ---------------------------------------cccHHHHHHHHH---hcCChhHHHHHHHHHHh-----CCCC
Q 007684          225 ---------------------------------------LRSYGPALFGFC---KLGNTDKAYEVDAHMGE-----SGVV  257 (593)
Q Consensus       225 ---------------------------------------~~ty~~li~~~~---~~g~~~~A~~l~~~m~~-----~g~~  257 (593)
                                                             ...+......+.   +.|++++|.++|+++.+     ..-.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  226 (514)
T 2gw1_A          147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN  226 (514)
T ss_dssp             ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence                                                   111122222222   37999999999999987     3212


Q ss_pred             C--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhc
Q 007684          258 P--------EEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVR  329 (593)
Q Consensus       258 p--------~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~  329 (593)
                      |        +...+..+...+...|++++|..+++++.+....  ...+..+...+...+..+.+..      ..+....
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~------~~~~~~~  298 (514)
T 2gw1_A          227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYN------YFDKALK  298 (514)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGG------HHHHHHT
T ss_pred             ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHH------HHHHHhh
Confidence            2        2455788888999999999999999999875433  6666666666655443332222      2222211


Q ss_pred             CCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          330 GGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       330 ~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                      ... .+..         +...+...+...+..++|+..+.    +.|.+...+..+...|...|+.++|++.|++.++..
T Consensus       299 ~~~-~~~~---------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  368 (514)
T 2gw1_A          299 LDS-NNSS---------VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF  368 (514)
T ss_dssp             TCT-TCTH---------HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred             cCc-CCHH---------HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence            110 0000         00111222223344455555444    556566677777777778888888888888877764


Q ss_pred             C
Q 007684          406 G  406 (593)
Q Consensus       406 ~  406 (593)
                      +
T Consensus       369 ~  369 (514)
T 2gw1_A          369 P  369 (514)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.08  E-value=2.1e-10  Score=118.28  Aligned_cols=188  Identities=13%  Similarity=0.095  Sum_probs=78.3

Q ss_pred             ch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007684           65 TT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYN  143 (593)
Q Consensus        65 ~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~  143 (593)
                      .. ..|..++.+.|++++|...|..            ..+...|..++..+...|++++|..+++..++.  .+++.+.+
T Consensus        33 ~vWs~La~A~l~~g~~~eAIdsfik------------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~   98 (449)
T 1b89_A           33 AVWSQLAKAQLQKGMVKEAIDSYIK------------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVET   98 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHc------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHH
Confidence            35 8999999999999999999932            124447999999999999999999988877764  55678888


Q ss_pred             HHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 007684          144 VLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP  223 (593)
Q Consensus       144 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  223 (593)
                      .|+.+|.+.                |+++++.++++       .|+..+|..+...|...|++++|..+|..+       
T Consensus        99 ~Li~~Y~Kl----------------g~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------  148 (449)
T 1b89_A           99 ELIFALAKT----------------NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------  148 (449)
T ss_dssp             --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred             HHHHHHHHh----------------CCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence            999999986                68999888884       478889999999999999999999999966       


Q ss_pred             CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684          224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED  303 (593)
Q Consensus       224 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~  303 (593)
                        ..|..+..++.+.|++++|.+.++++      .+..+|..++.+|+..|+++.|......     +...+.-...++.
T Consensus       149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~  215 (449)
T 1b89_A          149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELIN  215 (449)
T ss_dssp             --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHH
Confidence              58999999999999999999999998      3788999999999999999999655443     2244555556777


Q ss_pred             HHhcch
Q 007684          304 WFDSVD  309 (593)
Q Consensus       304 ~~~~~~  309 (593)
                      .|.+.+
T Consensus       216 ~Yek~G  221 (449)
T 1b89_A          216 YYQDRG  221 (449)
T ss_dssp             HHHHTT
T ss_pred             HHHHCC
Confidence            775544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.08  E-value=1.3e-08  Score=100.76  Aligned_cols=240  Identities=12%  Similarity=-0.007  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHH
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSN-------GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF  178 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~  178 (593)
                      .+..+...+...|++++|..+|+++.+.       ........+..+-..|...                |++++|.+.|
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~----------------g~~~~A~~~~   92 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ----------------NKYKDAANLL   92 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT----------------TCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC----------------CCHHHHHHHH
Confidence            4889999999999999999999998863       1222344555555566665                6999999999


Q ss_pred             HHHHhC------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-cccHHHHHHHHHhcCChhHH
Q 007684          179 QQMITD------KV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF------GIPPK-LRSYGPALFGFCKLGNTDKA  244 (593)
Q Consensus       179 ~~M~~~------g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~ty~~li~~~~~~g~~~~A  244 (593)
                      ++....      +- +....++..+...+...|++++|.+.+++..+.      +-.|. ..++..+...|...|++++|
T Consensus        93 ~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  172 (311)
T 3nf1_A           93 NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEV  172 (311)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHH
Confidence            988753      22 234568889999999999999999999998753      22233 46788899999999999999


Q ss_pred             HHHHHHHHhC------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-------CCCCHHHHHHHHHHHhcchh
Q 007684          245 YEVDAHMGES------GVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRTLV-------RQVSESTFKIIEDWFDSVDA  310 (593)
Q Consensus       245 ~~l~~~m~~~------g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~-------~~~~~~t~~~l~~~~~~~~~  310 (593)
                      .+.+++....      +-.|+ ...+..+..+|...|++++|.+.++++.+..       ..+...........+     
T Consensus       173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-----  247 (311)
T 3nf1_A          173 EYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER-----  247 (311)
T ss_dssp             HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH-----
Confidence            9999998754      22333 3458889999999999999999999987621       111111110111111     


Q ss_pred             hhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHh
Q 007684          311 AEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLA  386 (593)
Q Consensus       311 ~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~  386 (593)
                                       ...+                     ..........++...+.    ..|.....+..+...|.
T Consensus       248 -----------------~~~~---------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~  289 (311)
T 3nf1_A          248 -----------------EECK---------------------GKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYR  289 (311)
T ss_dssp             -----------------HHC----------------------------CCSCCCC---------CHHHHHHHHHHHHHHH
T ss_pred             -----------------HHhc---------------------CchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHH
Confidence                             0000                     00011111222222222    55777888999999999


Q ss_pred             hhhhhHHhHHHHHHHHHh
Q 007684          387 CQREVRSDFNKFQEWLGR  404 (593)
Q Consensus       387 ~~~~~~~a~~~f~~~l~~  404 (593)
                      ..|+.++|.+.|++.++.
T Consensus       290 ~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          290 RQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             HHTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            999999999999998764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.08  E-value=2.5e-09  Score=106.79  Aligned_cols=248  Identities=6%  Similarity=-0.084  Sum_probs=177.9

Q ss_pred             CCChhhHHhhcCCcccc-ch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 007684           48 FTKPITDIKQNRFSADL-TT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALR  125 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~-~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  125 (593)
                      +...+..+.+..  |+. .. ..+...|...|++++|...+.+.+       ...+.....+..+...+...|++++|.+
T Consensus        40 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------~~~~~~~~~~~~la~~~~~~~~~~~A~~  110 (327)
T 3cv0_A           40 AALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHAR-------MLDPKDIAVHAALAVSHTNEHNANAALA  110 (327)
T ss_dssp             HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            444555555432  333 33 778889999999999999997666       3344566779999999999999999999


Q ss_pred             HHHHHHHCCCCCCH-HHHHHHHHHHHccCCCCCCCCC-CC-cccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684          126 LYDDARSNGITLSQ-HHYNVLLYVCSCKCGSESSENG-DR-ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA  202 (593)
Q Consensus       126 l~~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~-~~-~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~  202 (593)
                      .|+++.+..  |+. ..+..++..+....   ....+ .. .+...|++++|.+.++++.+.. +.+..++..+...+..
T Consensus       111 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~  184 (327)
T 3cv0_A          111 SLRAWLLSQ--PQYEQLGSVNLQADVDID---DLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNL  184 (327)
T ss_dssp             HHHHHHHTS--TTTTTC-----------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC--CccHHHHHHHhHHHHHHH---HHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence            999998763  222 22222211110000   00000 01 1344689999999999998876 5578899999999999


Q ss_pred             cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007684          203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI  282 (593)
Q Consensus       203 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~  282 (593)
                      .|++++|.+.++++.+..- .+..+|..+...|.+.|+.++|.+.++++.+.. +.+...+..+..++...|++++|.+.
T Consensus       185 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  262 (327)
T 3cv0_A          185 SNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQ  262 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence            9999999999999987431 346788999999999999999999999988643 23567799999999999999999999


Q ss_pred             HHHHHHccCCC-----------CHHHHHHHHHHHhcchhhh
Q 007684          283 LHRLRTLVRQV-----------SESTFKIIEDWFDSVDAAE  312 (593)
Q Consensus       283 l~~m~~~~~~~-----------~~~t~~~l~~~~~~~~~~~  312 (593)
                      ++++.+.....           +...+..+...+...+..+
T Consensus       263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  303 (327)
T 3cv0_A          263 LVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD  303 (327)
T ss_dssp             HHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence            99987743331           3456666666665555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.01  E-value=6.5e-08  Score=90.63  Aligned_cols=187  Identities=10%  Similarity=0.002  Sum_probs=150.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT  183 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~  183 (593)
                      ...+..+...+...|++++|..+|+++.+.. +.+...+..+...|...                |++++|.+.|+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~a~~   70 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYL----------------KVNDKAQESFRQALS   70 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc----------------CChHHHHHHHHHHHH
Confidence            3458889999999999999999999988763 23566777777777775                599999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 007684          184 DKVDPNEATFTSVARLAVAK-EDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP  261 (593)
Q Consensus       184 ~g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  261 (593)
                      .. +.+..++..+...+... |++++|...++++.+.+..|+ ...+..+...|.+.|+.++|.+.++++.+..- .+..
T Consensus        71 ~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~  148 (225)
T 2vq2_A           71 IK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPP  148 (225)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHH
T ss_pred             hC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCch
Confidence            65 55788999999999999 999999999999988433344 56788899999999999999999999886432 2467


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcch
Q 007684          262 ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD  309 (593)
Q Consensus       262 t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~  309 (593)
                      .+..+..++...|+.++|.+.++++.+.....+...+..+...+...+
T Consensus       149 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (225)
T 2vq2_A          149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG  196 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            789999999999999999999999887433235555555555554333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.00  E-value=3.7e-08  Score=94.53  Aligned_cols=225  Identities=10%  Similarity=0.028  Sum_probs=168.0

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      ..+..+...+...|++++|+.+|+++.+..  .+...|..+-.++...                |++++|.+.|++..+.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~----------------~~~~~A~~~~~~a~~~   67 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEK----------------GEYETAISTLNDAVEQ   67 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHc----------------ccHHHHHHHHHHHHHh
Confidence            458889999999999999999999999887  6778888877777776                5999999999998764


Q ss_pred             C--CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684          185 K--VDPN----EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP  258 (593)
Q Consensus       185 g--~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  258 (593)
                      .  ..++    ..++..+...+...|++++|.+.+++..+..  |+       ...+.+.|+.++|.+.++++....  |
T Consensus        68 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~--~  136 (258)
T 3uq3_A           68 GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVN--P  136 (258)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCC--H
T ss_pred             CcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcC--c
Confidence            3  1223    5789999999999999999999999998743  44       245677888999999999988643  3


Q ss_pred             C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCccccc
Q 007684          259 E-EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQ  337 (593)
Q Consensus       259 ~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~  337 (593)
                      + ...+..+...+...|++++|...+++..+... .+...+..+...+...+..+.+..     .+.+.           
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~-----~~~~a-----------  199 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIA-----DCNKA-----------  199 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH-----HHHHH-----------
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHH-----HHHHH-----------
Confidence            3 44578888889999999999999999877432 234455555555533332221111     11111           


Q ss_pred             ccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          338 GWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       338 ~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                                                    +.+.|.+...+..+...|...|+.++|.+.|++.++..
T Consensus       200 ------------------------------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          200 ------------------------------IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             ------------------------------HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ------------------------------HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence                                          11334556778888889999999999999999988754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.98  E-value=2.4e-08  Score=95.06  Aligned_cols=164  Identities=12%  Similarity=0.047  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      ..|..+...+...|++++|..+|+++.+.. +.+...+..+...+...                |++++|.+.|++....
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~~~~~   86 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSV----------------NELERALAFYDKALEL   86 (243)
T ss_dssp             ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHc
Confidence            347788888999999999999999998763 23566676666677765                5999999999999876


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS  264 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  264 (593)
                      . +.+..++..+...+...|++++|.+.++++.+..- .+...+..+...|.+.|+.++|.+.++++.+.. ..+...+.
T Consensus        87 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  163 (243)
T 2q7f_A           87 D-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARF  163 (243)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             C-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHH
Confidence            5 55788899999999999999999999999987542 346778889999999999999999999988643 23567788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          265 ALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       265 ~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .+...+...|++++|...++++.+
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~~~~  187 (243)
T 2q7f_A          164 QFGMCLANEGMLDEALSQFAAVTE  187 (243)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            899999999999999999988865

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.98  E-value=1.4e-08  Score=100.94  Aligned_cols=196  Identities=15%  Similarity=0.062  Sum_probs=153.5

Q ss_pred             ccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhc-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 007684           61 SADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKAR-RESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS  138 (593)
Q Consensus        61 ~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  138 (593)
                      +|+..+ ..+...+...|+.++|...+++++      ... .+.....+..+-..+.+.|++++|++.+++      ..+
T Consensus        62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll------~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~  129 (291)
T 3mkr_A           62 APELQAVRMFAEYLASHSRRDAIVAELDREM------SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDS  129 (291)
T ss_dssp             CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHH------HSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCS
T ss_pred             ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHH------hcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCC
Confidence            444444 888889999999999999986655      122 233455677778899999999999999987      457


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHH
Q 007684          139 QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF---TSVARLAVAKEDPEMAFDLVKQ  215 (593)
Q Consensus       139 ~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty---~~li~~~~~~g~~~~A~~l~~~  215 (593)
                      ...+..+..++.+.                |+.++|.+.|+++.+..  |+...+   .+.+..+...|++++|..+|++
T Consensus       130 ~~~~~~l~~~~~~~----------------g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~  191 (291)
T 3mkr_A          130 LECMAMTVQILLKL----------------DRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQE  191 (291)
T ss_dssp             HHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            77888888888876                69999999999998875  543211   2233444556999999999999


Q ss_pred             HHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 007684          216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK-VYEILHRLRT  288 (593)
Q Consensus       216 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~-a~~~l~~m~~  288 (593)
                      +.+. .+.+...++.+..++.+.|++++|++.|++..+.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus       192 ~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          192 MADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             HHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            9886 33457889999999999999999999999988643 2356679999999999998865 6788888876

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.95  E-value=1.5e-08  Score=97.27  Aligned_cols=196  Identities=15%  Similarity=0.083  Sum_probs=150.4

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCC----HH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNG--ITLS----QH  140 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~  140 (593)
                      ..+-..+...|++++|...+.+.+       ... .....+..+...+...|++++|+..|+++.+..  ..++    ..
T Consensus         9 ~~~g~~~~~~~~~~~A~~~~~~a~-------~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            9 KAEGNKFYKARQFDEAIEHYNKAW-------ELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-------HHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHH-------Hhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            566778889999999999997666       222 556779999999999999999999999988652  1122    46


Q ss_pred             HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC------------------------C-CCCHHHHHH
Q 007684          141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK------------------------V-DPNEATFTS  195 (593)
Q Consensus       141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g------------------------~-~p~~~ty~~  195 (593)
                      +|..+-..+...                |++++|.+.|++.....                        . +.+...+..
T Consensus        81 ~~~~l~~~~~~~----------------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  144 (258)
T 3uq3_A           81 SFARIGNAYHKL----------------GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARL  144 (258)
T ss_dssp             HHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHc----------------ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHH
Confidence            666666677775                47777777777776621                        1 234457778


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007684          196 VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK  275 (593)
Q Consensus       196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~  275 (593)
                      +...+...|++++|...+++..+..- .+..+|..+...|.+.|++++|.+.+++..+.. +.+...|..+..++...|+
T Consensus       145 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~  222 (258)
T 3uq3_A          145 EGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE  222 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhh
Confidence            88888899999999999998877432 346778888888999999999999999887643 2346678888888999999


Q ss_pred             HHHHHHHHHHHHH
Q 007684          276 VDKVYEILHRLRT  288 (593)
Q Consensus       276 ~~~a~~~l~~m~~  288 (593)
                      .++|...+++..+
T Consensus       223 ~~~A~~~~~~a~~  235 (258)
T 3uq3_A          223 YASALETLDAART  235 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888766

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.95  E-value=1.7e-08  Score=108.57  Aligned_cols=277  Identities=8%  Similarity=-0.028  Sum_probs=173.0

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+-..+.+.|++++|...|.+.+       ...+.....+..+...|.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus        29 ~~~g~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la  100 (537)
T 3fp2_A           29 KNRGNHFFTAKNFNEAIKYYQYAI-------ELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA  100 (537)
T ss_dssp             HHHHHHHHHTTCCC-CHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHH-------hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence            556668889999999999997776       3445567779999999999999999999999988764 22456666666


Q ss_pred             HHHHccCCCCCCCCCC--------------Ccc-----------------------------------------------
Q 007684          147 YVCSCKCGSESSENGD--------------REN-----------------------------------------------  165 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~--------------~~~-----------------------------------------------  165 (593)
                      .++...+..+.+...+              ..+                                               
T Consensus       101 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (537)
T 3fp2_A          101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV  180 (537)
T ss_dssp             HHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence            6666543211110000              000                                               


Q ss_pred             --------------------------------cccccHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCh
Q 007684          166 --------------------------------DSNLGLKRGFEIFQQMITDKVDPN-------EATFTSVARLAVAKEDP  206 (593)
Q Consensus       166 --------------------------------~~~g~~~~a~~l~~~M~~~g~~p~-------~~ty~~li~~~~~~g~~  206 (593)
                                                      ...|++++|.++|+++.+.. +.+       ..++..+...+...|++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccH
Confidence                                            00135566666666665443 122       22455555666677777


Q ss_pred             HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          207 EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       207 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      ++|.+.+++..+.  .|+..+|..+...|...|++++|.+.++++.+..- .+...+..+...+...|++++|...+++.
T Consensus       260 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  336 (537)
T 3fp2_A          260 LDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKA  336 (537)
T ss_dssp             HHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            7777777777663  35556666677777777777777777777665331 24555777777777777777777777777


Q ss_pred             HHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCccccccc
Q 007684          287 RTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLV  366 (593)
Q Consensus       287 ~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~  366 (593)
                      .+.... +...+..+...+...+..                                                  ++|++
T Consensus       337 ~~~~~~-~~~~~~~la~~~~~~g~~--------------------------------------------------~~A~~  365 (537)
T 3fp2_A          337 QSLNPE-NVYPYIQLACLLYKQGKF--------------------------------------------------TESEA  365 (537)
T ss_dssp             HHHCTT-CSHHHHHHHHHHHHTTCH--------------------------------------------------HHHHH
T ss_pred             HHhCCC-CHHHHHHHHHHHHHcCCH--------------------------------------------------HHHHH
Confidence            653211 223344444444322221                                                  22222


Q ss_pred             ccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684          367 CID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG  406 (593)
Q Consensus       367 ~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~  406 (593)
                      .+.    +.|.+...+..+...+...|+.++|.+.|++.++..+
T Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  409 (537)
T 3fp2_A          366 FFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE  409 (537)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence            221    3345566777888889999999999999999988654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.91  E-value=1.4e-07  Score=101.31  Aligned_cols=243  Identities=11%  Similarity=0.039  Sum_probs=175.4

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK  185 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g  185 (593)
                      .+..+...+...|++++|...|+++.+.  .|+...|..+-..+...                |++++|.+.|+++.+..
T Consensus       245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~~~~~~  306 (537)
T 3fp2_A          245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADK----------------ENSQEFFKFFQKAVDLN  306 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCS----------------SCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHh----------------cCHHHHHHHHHHHhccC
Confidence            3666777888999999999999999987  56666676666666665                69999999999998766


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684          186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS  264 (593)
Q Consensus       186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  264 (593)
                       +.+..++..+...+...|++++|.+.+++..+..  |+ ...|..+...|...|++++|.+.++++.+.. +.+...+.
T Consensus       307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~  382 (537)
T 3fp2_A          307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPT  382 (537)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHH
T ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence             5578899999999999999999999999998743  44 6788999999999999999999999998653 23456788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCccccccc
Q 007684          265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSE-----STFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGW  339 (593)
Q Consensus       265 ~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~-----~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~  339 (593)
                      .+...+...|++++|...++++.+.......     ..+......+.....  .+...+                     
T Consensus       383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~---------------------  439 (537)
T 3fp2_A          383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSS--QDPTQL---------------------  439 (537)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHT--C----C---------------------
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhh--ccchhh---------------------
Confidence            9999999999999999999998763211110     001111111111100  000000                     


Q ss_pred             ccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCe
Q 007684          340 LGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDA  410 (593)
Q Consensus       340 ~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~  410 (593)
                                       ..+..++|+..+.    +.|.+...+..+...|...|+.++|.+.|++.++..+..+.
T Consensus       440 -----------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  497 (537)
T 3fp2_A          440 -----------------DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE  497 (537)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred             -----------------hHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence                             0011122222222    34556678888899999999999999999999987655443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.89  E-value=9.1e-08  Score=92.87  Aligned_cols=222  Identities=8%  Similarity=-0.063  Sum_probs=158.7

Q ss_pred             cCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHH
Q 007684          116 KRGDVFEALRLYDDARSNGITL---SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT  192 (593)
Q Consensus       116 ~~g~~~~A~~l~~~m~~~g~~p---~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t  192 (593)
                      ..|++++|+..|+++.+.....   +..+|..+-..+...                |++++|.+.|++..+.. +.+..+
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~al~~~-~~~~~~   79 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL----------------GLRALARNDFSQALAIR-PDMPEV   79 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-CCCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc----------------ccHHHHHHHHHHHHHcC-CCcHHH
Confidence            3478999999999998864221   345555555566665                69999999999998876 557889


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684          193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD  272 (593)
Q Consensus       193 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~  272 (593)
                      +..+...+...|++++|.+.+++..+..- .+..++..+...|.+.|++++|.+.++++.+.  .|+......++..+..
T Consensus        80 ~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~  156 (275)
T 1xnf_A           80 FNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQ  156 (275)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence            99999999999999999999999987431 24678899999999999999999999999864  3555555666666678


Q ss_pred             cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecc
Q 007684          273 AKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQI  352 (593)
Q Consensus       273 ~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i  352 (593)
                      .|+.++|...+.+..... .++...+. +...+.....       .+.  ..                            
T Consensus       157 ~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-------~~~--a~----------------------------  197 (275)
T 1xnf_A          157 KLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNIS-------EQT--LM----------------------------  197 (275)
T ss_dssp             HHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSC-------HHH--HH----------------------------
T ss_pred             hcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcC-------HHH--HH----------------------------
Confidence            899999999998876642 22333332 2222211110       000  00                            


Q ss_pred             cCCCCcCcccccccccCCCH----HHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          353 DENGVCCSCNERLVCIDIDP----RETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       353 ~~~g~c~~~~~al~~~~l~~----~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                               ....+.+...|    .+...+..+...|...|+.++|.+.|++.++..
T Consensus       198 ---------~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  245 (275)
T 1xnf_A          198 ---------ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  245 (275)
T ss_dssp             ---------HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             ---------HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence                     00111111222    335778888889999999999999999998865

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.87  E-value=6.6e-07  Score=87.20  Aligned_cols=164  Identities=11%  Similarity=-0.004  Sum_probs=136.0

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      ....+..+-..|...|++++|+..|++..+.+   +...+..+-..|..+.            ...|+.++|++.|++..
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~------------~~~~~~~~A~~~~~~a~   69 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ------------GVEKNLKKAASFYAKAC   69 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------------SSCCCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------------CcCCCHHHHHHHHHHHH
Confidence            45567788888999999999999999998843   4455655555666510            01259999999999998


Q ss_pred             hCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 007684          183 TDKVDPNEATFTSVARLAVA----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----LGNTDKAYEVDAHMGES  254 (593)
Q Consensus       183 ~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~  254 (593)
                      +.+   +..++..+...|..    .+++++|.+.|++..+.+   +...+..+-..|..    .++.++|.+.|++..+.
T Consensus        70 ~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A           70 DLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence            876   78889999999999    999999999999998865   56788889999999    99999999999999887


Q ss_pred             CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcc
Q 007684          255 GVVPEEPELSALLKLSVD----AKKVDKVYEILHRLRTLV  290 (593)
Q Consensus       255 g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m~~~~  290 (593)
                      +   +...+..+...|..    .++.++|...+++..+.+
T Consensus       144 ~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  180 (273)
T 1ouv_A          144 N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK  180 (273)
T ss_dssp             T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            6   56678888888888    899999999999988753

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.86  E-value=3.6e-07  Score=83.25  Aligned_cols=165  Identities=10%  Similarity=0.021  Sum_probs=139.3

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      ...+|..+-..|.+.|++++|++.|++..+..- -+..+|..+-.+|...                |++++|.+.+....
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~----------------~~~~~a~~~~~~~~   66 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDI----------------GLPNDAIESLKKFV   66 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH
Confidence            456799999999999999999999999887732 2556666666677775                59999999999988


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 007684          183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP  261 (593)
Q Consensus       183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  261 (593)
                      ... +-+...+..+...+...++++.|.+.+++.....  |+ ...+..+...|.+.|++++|.+.|++..+.. +-+..
T Consensus        67 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~  142 (184)
T 3vtx_A           67 VLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIR  142 (184)
T ss_dssp             HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             hcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhh
Confidence            766 5567788888899999999999999999988743  44 5778889999999999999999999988653 23566


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          262 ELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       262 t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .|..+..+|.+.|+.++|.+.|++..+
T Consensus       143 ~~~~lg~~~~~~g~~~~A~~~~~~al~  169 (184)
T 3vtx_A          143 AYQSIGLAYEGKGLRDEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            799999999999999999999999877

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.86  E-value=2.2e-08  Score=99.06  Aligned_cols=205  Identities=12%  Similarity=0.053  Sum_probs=153.9

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP--EGVLRHKLDMCSKRGDVFEALRLYDDARSN------GITL-  137 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-  137 (593)
                      ..+...|...|++++|...+.+.+. ......+...+  ...+..+...|...|++++|..+|+++.+.      +-.| 
T Consensus        31 ~~l~~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  109 (311)
T 3nf1_A           31 HNLVIQYASQGRYEVAVPLCKQALE-DLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA  109 (311)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence            7777889999999999999987772 22211111222  234888999999999999999999998754      2222 


Q ss_pred             CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007684          138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD------KVDP-NEATFTSVARLAVAKEDPEMAF  210 (593)
Q Consensus       138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~------g~~p-~~~ty~~li~~~~~~g~~~~A~  210 (593)
                      ...++..+-..|...                |++++|.+.|++..+.      +-.| ...++..+...+...|++++|.
T Consensus       110 ~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  173 (311)
T 3nf1_A          110 VAATLNNLAVLYGKR----------------GKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE  173 (311)
T ss_dssp             HHHHHHHHHHHHHTT----------------TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHc----------------CcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            234555555677665                6999999999988763      2223 3457888999999999999999


Q ss_pred             HHHHHHHhC------CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC----------------------------
Q 007684          211 DLVKQMKSF------GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG----------------------------  255 (593)
Q Consensus       211 ~l~~~m~~~------g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----------------------------  255 (593)
                      +++++..+.      +-.|. ..++..+...|.+.|+.++|.+.++++.+..                            
T Consensus       174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
T 3nf1_A          174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK  253 (311)
T ss_dssp             HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence            999998763      22343 4578889999999999999999999987521                            


Q ss_pred             -------------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          256 -------------------VVP-EEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       256 -------------------~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                                         ..| +..++..+..+|.+.|++++|.+++++..+
T Consensus       254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          254 QKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ----CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                               112 234578888999999999999999988765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.85  E-value=1.6e-07  Score=84.84  Aligned_cols=164  Identities=13%  Similarity=0.027  Sum_probs=137.8

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      ..+..+...+...|++++|...|+++.+.. +.+...+..+...+...                |++++|.+.++++.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKT----------------GAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHhc
Confidence            347788888999999999999999887653 23566777777777765                5999999999999876


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS  264 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  264 (593)
                      . +.+..++..+...+...|++++|.+.++++.+..- .+...+..+...|.+.|+.++|.+.+++..+.. ..+...+.
T Consensus        72 ~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  148 (186)
T 3as5_A           72 A-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHR  148 (186)
T ss_dssp             C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHH
Confidence            5 55788899999999999999999999999987532 346778889999999999999999999988654 23567789


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          265 ALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       265 ~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .+...+...|+.++|...+++..+
T Consensus       149 ~la~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          149 AIAFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999876

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.81  E-value=6.1e-07  Score=87.45  Aligned_cols=205  Identities=7%  Similarity=-0.066  Sum_probs=163.5

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSK----RGDVFEALRLYDDARSNGITLSQHHY  142 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty  142 (593)
                      ..+-..|...|++++|...|.+..       .  ..+...+..+-..|..    .+++++|+..|++..+.+   +...+
T Consensus        10 ~~lg~~~~~~~~~~~A~~~~~~a~-------~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A           10 VGLGAKSYKEKDFTQAKKYFEKAC-------D--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHH-------H--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            556667888899999999986555       2  3456678888889999    999999999999999886   66777


Q ss_pred             HHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHh
Q 007684          143 NVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA----KEDPEMAFDLVKQMKS  218 (593)
Q Consensus       143 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~  218 (593)
                      ..+-..|..+.            ...|+.++|++.|++..+.+   +..++..+...|..    .+++++|.+.+++..+
T Consensus        78 ~~lg~~~~~g~------------~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~  142 (273)
T 1ouv_A           78 HLLGNLYYSGQ------------GVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD  142 (273)
T ss_dssp             HHHHHHHHHTS------------SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC------------CcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence            76666776610            01259999999999998876   77889999999999    9999999999999988


Q ss_pred             CCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcc
Q 007684          219 FGIPPKLRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD----AKKVDKVYEILHRLRTLV  290 (593)
Q Consensus       219 ~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m~~~~  290 (593)
                      .+   +...+..+...|..    .++.++|.+.|++..+.+   +...+..+...|..    .++.++|...+++..+.+
T Consensus       143 ~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  216 (273)
T 1ouv_A          143 LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  216 (273)
T ss_dssp             TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence            65   45667778888888    999999999999988765   46778888899999    999999999999988753


Q ss_pred             CCCCHHHHHHHHHHHhc
Q 007684          291 RQVSESTFKIIEDWFDS  307 (593)
Q Consensus       291 ~~~~~~t~~~l~~~~~~  307 (593)
                      .   ...+..+-..|..
T Consensus       217 ~---~~a~~~l~~~~~~  230 (273)
T 1ouv_A          217 N---GGGCFNLGAMQYN  230 (273)
T ss_dssp             C---HHHHHHHHHHHHT
T ss_pred             C---HHHHHHHHHHHHc
Confidence            2   4444455555543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.78  E-value=1e-06  Score=85.40  Aligned_cols=236  Identities=11%  Similarity=-0.002  Sum_probs=162.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      +-.....+.+.|++++|+.+|+++.+..- -+...+..+-..|...                |++++|.+.|++..+..-
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~----------------~~~~~A~~~~~~a~~~~~   68 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYEL----------------AKYDLAQKDIETYFSKVN   68 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHT----------------TCHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHhccC
Confidence            45566778899999999999999988732 1334666666677665                699999999999988432


Q ss_pred             CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHH
Q 007684          187 DP--NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPEL  263 (593)
Q Consensus       187 ~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~  263 (593)
                      .|  ...+|..+...+...|++++|.+.+++..+..- -+..+|..+...|...|++++|.+.+++..+.  .| +...+
T Consensus        69 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~  145 (272)
T 3u4t_A           69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVF  145 (272)
T ss_dssp             TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHH
T ss_pred             chhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHH
Confidence            22  234589999999999999999999999987432 23578999999999999999999999998765  34 44556


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHhcchhhhhccccchh--hhHHHhhhcCCCcccccccc
Q 007684          264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVS-ESTFKIIEDWFDSVDAAEIGVLNWDV--SKVREGIVRGGGGWHGQGWL  340 (593)
Q Consensus       264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~g~~~~g~~~~  340 (593)
                      ..+...+...+++++|.+.+++..+.  .|+ ...+..+...+...+.    ...++.  ..+.++              
T Consensus       146 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a--------------  205 (272)
T 3u4t_A          146 YELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDP----DTKQGLAKPYYEKL--------------  205 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHST----TCSSCTTHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCc----chhhHHHHHHHHHH--------------
Confidence            66662444556999999999999873  233 3333333333322111    000111  111111              


Q ss_pred             cCCceEEEEecccCCCCcCcccccccccCCCH-----HHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684          341 GSGKWRVERTQIDENGVCCSCNERLVCIDIDP-----RETENFASSLSNLACQREVRSDFNKFQEWLGRHG  406 (593)
Q Consensus       341 ~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~-----~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~  406 (593)
                                              ++...-.|     .....+..+...|...|+.++|.+.|++.++..+
T Consensus       206 ------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  252 (272)
T 3u4t_A          206 ------------------------IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP  252 (272)
T ss_dssp             ------------------------HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ------------------------HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence                                    11111001     1235677777889999999999999999998654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.76  E-value=3.7e-08  Score=95.74  Aligned_cols=199  Identities=13%  Similarity=0.047  Sum_probs=146.4

Q ss_pred             HhcCCCcccCCCCcccccchHHhhhhcCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCC-CHHHHH
Q 007684           73 FSKKSTVNESSAPNTGTMSNKSKKKARRESP--EGVLRHKLDMCSKRGDVFEALRLYDDARSN------GITL-SQHHYN  143 (593)
Q Consensus        73 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~ty~  143 (593)
                      ....|++++|...+++.+.. ..+..+...|  ...+..+...|...|++++|+.+|+++.+.      +-.| ...+|.
T Consensus        11 ~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~   89 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALED-LEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN   89 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHH-HHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            45678888898888777732 2222222223  234889999999999999999999998754      2222 234555


Q ss_pred             HHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007684          144 VLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD------K-VDPNEATFTSVARLAVAKEDPEMAFDLVKQM  216 (593)
Q Consensus       144 ~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~------g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m  216 (593)
                      .+-..|...                |++++|.+.|++....      . -+....++..+...+...|++++|.+.+++.
T Consensus        90 ~l~~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  153 (283)
T 3edt_B           90 NLAVLYGKR----------------GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA  153 (283)
T ss_dssp             HHHHHHHTT----------------TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHh----------------ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            555677765                6999999999988754      1 1234568899999999999999999999998


Q ss_pred             HhC------CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC----------------------------------
Q 007684          217 KSF------GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG----------------------------------  255 (593)
Q Consensus       217 ~~~------g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----------------------------------  255 (593)
                      .+.      +-.|+ ..++..+...|.+.|+.++|.+.+++..+..                                  
T Consensus       154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (283)
T 3edt_B          154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP  233 (283)
T ss_dssp             HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH
Confidence            763      11343 4678889999999999999999999887530                                  


Q ss_pred             -------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          256 -------------VVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       256 -------------~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                                   ..|+ ...+..+..+|...|++++|..++++..+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          234 YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             ---------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                         1122 34577888899999999999999988765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.75  E-value=1e-07  Score=92.56  Aligned_cols=195  Identities=11%  Similarity=-0.073  Sum_probs=153.3

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...|...|++++|...+.+.+       ...+.....+..+...|...|++++|+..|+++.+.. +.+...+..+-
T Consensus        47 ~~l~~~~~~~~~~~~A~~~~~~al-------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la  118 (275)
T 1xnf_A           47 YERGVLYDSLGLRALARNDFSQAL-------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHH-------HcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHH
Confidence            778889999999999999997666       3345567789999999999999999999999998863 22456777777


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR  226 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  226 (593)
                      .++...                |++++|.+.|+++.+..  |+.......+..+...|++++|...+++..... .++..
T Consensus       119 ~~~~~~----------------g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  179 (275)
T 1xnf_A          119 IALYYG----------------GRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQW  179 (275)
T ss_dssp             HHHHHT----------------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCST
T ss_pred             HHHHHh----------------ccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchH
Confidence            777775                59999999999998754  444455556666677899999999998887643 23444


Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVV--P-EEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      .+. ++..+...++.++|.+.+++.......  | +...+..+...|...|+.++|...+++..+.
T Consensus       180 ~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          180 GWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            444 777888888999999999988643311  1 1466888999999999999999999999874

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.72  E-value=3e-07  Score=82.99  Aligned_cols=161  Identities=11%  Similarity=-0.024  Sum_probs=134.1

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...+...|++++|...+.+.+       ...+.....+..+...+...|++++|..+++++.+.. +.+...+..+.
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a   83 (186)
T 3as5_A           12 RDKGISHAKAGRYSQAVMLLEQVY-------DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLG   83 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTC-------CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHH-------HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            556677888999999999998777       3344556779999999999999999999999988763 23566676666


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR  226 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  226 (593)
                      ..+...                |++++|.+.|+++.... +.+...+..+...+...|++++|.+.+++..+..- .+..
T Consensus        84 ~~~~~~----------------~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~  145 (186)
T 3as5_A           84 LTYVQV----------------QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGK  145 (186)
T ss_dssp             HHHHHH----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred             HHHHHh----------------cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchH
Confidence            677665                59999999999998765 56788999999999999999999999999987532 3467


Q ss_pred             cHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          227 SYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       227 ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      ++..+...|.+.|+.++|.+.+++..+
T Consensus       146 ~~~~la~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          146 VHRAIAFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            888899999999999999999998864

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.70  E-value=4.3e-07  Score=88.03  Aligned_cols=158  Identities=15%  Similarity=0.044  Sum_probs=117.6

Q ss_pred             HcCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC---
Q 007684          115 SKRGDVFEALRLYDDARSN-------GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD---  184 (593)
Q Consensus       115 ~~~g~~~~A~~l~~~m~~~-------g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~---  184 (593)
                      ...|++++|+.+|++..+.       .......++..+-..|...                |++++|.+.|++....   
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~~~   75 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ----------------NKYKEAAHLLNDALAIREK   75 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----------------ccHHHHHHHHHHHHHHHHH
Confidence            4456777777777766542       1122344555555566665                6999999999988754   


Q ss_pred             ---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          185 ---KV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF------GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       185 ---g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                         +- +....++..+...|...|++++|.+.+++....      .-.|+ ..+|..+...|...|++++|.+.+++...
T Consensus        76 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  155 (283)
T 3edt_B           76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE  155 (283)
T ss_dssp             HTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               22 233568999999999999999999999998753      11233 57888899999999999999999999876


Q ss_pred             C------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          254 S------GVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       254 ~------g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .      +-.|+ ...+..+..+|...|++++|..++++..+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4      22333 45688899999999999999999999876

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.69  E-value=4.6e-07  Score=90.42  Aligned_cols=187  Identities=12%  Similarity=0.093  Sum_probs=147.6

Q ss_pred             cCCCc-------ccCCCCcccccchHHhhhh-cCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HH-HHHH
Q 007684           75 KKSTV-------NESSAPNTGTMSNKSKKKA-RRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QH-HYNV  144 (593)
Q Consensus        75 ~~g~~-------~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~-ty~~  144 (593)
                      +.|++       ++|...|++.+       . -.+.....|..+...+.+.|++++|..+|+++.+.  .|+ .. .|..
T Consensus        69 ~~g~~~~~~~~~~~A~~~~~rAl-------~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~  139 (308)
T 2ond_A           69 EKGDMNNAKLFSDEAANIYERAI-------STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ  139 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHH-------TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHH
T ss_pred             hccchhhcccchHHHHHHHHHHH-------HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHH
Confidence            45776       78888886555       3 23345567999999999999999999999999985  554 32 6777


Q ss_pred             HHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCC
Q 007684          145 LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAV-AKEDPEMAFDLVKQMKSFGIPP  223 (593)
Q Consensus       145 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p  223 (593)
                      +...+.+.                |++++|.++|++..+.. +++...|...+.... ..|+.++|.++|++..+.  .|
T Consensus       140 ~~~~~~~~----------------~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p  200 (308)
T 2ond_A          140 YMKFARRA----------------EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YG  200 (308)
T ss_dssp             HHHHHHHH----------------HCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HT
T ss_pred             HHHHHHHh----------------cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence            77776664                69999999999999865 445555654444432 379999999999999773  24


Q ss_pred             C-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          224 K-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG-VVP--EEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       224 ~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      + ...|..++..+.+.|+.++|..+|++..... +.|  ....|..++..+.+.|+.++|..+++++.+.
T Consensus       201 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          201 DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4 5778888999999999999999999999863 555  4667999999999999999999999998773

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.69  E-value=1e-07  Score=101.44  Aligned_cols=200  Identities=9%  Similarity=-0.057  Sum_probs=159.5

Q ss_pred             HHHHHHHhcCCCc-ccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007684           67 GLCTLAFSKKSTV-NESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l  145 (593)
                      ..+-..|...|++ ++|+..|.+.+       ...+.....+..+-..|.+.|++++|+..|++..+.  .|+...+..+
T Consensus       106 ~~lg~~~~~~g~~~~~A~~~~~~al-------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l  176 (474)
T 4abn_A          106 MLKGKALNVTPDYSPEAEVLLSKAV-------KLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNL  176 (474)
T ss_dssp             HHHHHHHTSSSSCCHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHH
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHH
Confidence            7777889999999 99999997766       334556778999999999999999999999999987  5776666665


Q ss_pred             HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHHHH
Q 007684          146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK--------EDPEMAFDLVKQMK  217 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~--------g~~~~A~~l~~~m~  217 (593)
                      -.++.....       .....+.|++++|++.|++..+.. +-+...+..+..+|...        |++++|.+.|++..
T Consensus       177 g~~~~~~~~-------~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al  248 (474)
T 4abn_A          177 SMVLRQLQT-------DSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE  248 (474)
T ss_dssp             HHHHTTCCC-------SCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcc-------CChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence            556655300       000111269999999999998875 55788999999999999        99999999999998


Q ss_pred             hCCCCC----CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          218 SFGIPP----KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       218 ~~g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      +.  .|    +...|..+..+|.+.|++++|.+.|++..+..- -+...+..+..++...|+.++|.+.+.++
T Consensus       249 ~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          249 KV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             Hh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            74  36    467899999999999999999999999886431 24456888888999999999888766554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.67  E-value=4.7e-07  Score=93.30  Aligned_cols=217  Identities=10%  Similarity=0.090  Sum_probs=169.2

Q ss_pred             Cccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCC
Q 007684           60 FSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD-VFEALRLYDDARSNGIT  136 (593)
Q Consensus        60 ~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~  136 (593)
                      +.|+...  ..+-..+.+.|++++|...+.+.+       ...+.....|+.+-..+.+.|+ +++|+..|+++.+..-.
T Consensus        92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al-------~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~  164 (382)
T 2h6f_A           92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAI-------ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK  164 (382)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHH-------HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC
Confidence            3344444  667778889999999999997777       4556677789999999999996 99999999999987422


Q ss_pred             CCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007684          137 LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM  216 (593)
Q Consensus       137 p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m  216 (593)
                       +...|+.+-.++...                |++++|++.|+++.+.. +-+..+|..+..++...|++++|+..++++
T Consensus       165 -~~~a~~~~g~~~~~~----------------g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~a  226 (382)
T 2h6f_A          165 -NYQVWHHRRVLVEWL----------------RDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQL  226 (382)
T ss_dssp             -CHHHHHHHHHHHHHH----------------TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence             566777666667665                59999999999999876 568889999999999999999999999999


Q ss_pred             HhCCCCCC-cccHHHHHHHHHh-cCChhHH-----HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 007684          217 KSFGIPPK-LRSYGPALFGFCK-LGNTDKA-----YEVDAHMGESGVVP-EEPELSALLKLSVDAK--KVDKVYEILHRL  286 (593)
Q Consensus       217 ~~~g~~p~-~~ty~~li~~~~~-~g~~~~A-----~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g--~~~~a~~~l~~m  286 (593)
                      .+..  |+ ...|+.+..+|.+ .|..++|     ++.|++..+..  | +...|..+..++...|  +.++|.+.+.++
T Consensus       227 l~l~--P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          227 LKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             HHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred             HHhC--CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence            9844  54 6789999999999 6666888     47788877533  4 4566888888888888  689999999887


Q ss_pred             HHccCCCCHHHHHHHHHHHhc
Q 007684          287 RTLVRQVSESTFKIIEDWFDS  307 (593)
Q Consensus       287 ~~~~~~~~~~t~~~l~~~~~~  307 (593)
                       + ....+...+..+...|..
T Consensus       303 -~-~~p~~~~al~~La~~~~~  321 (382)
T 2h6f_A          303 -Q-PSHSSPYLIAFLVDIYED  321 (382)
T ss_dssp             -T-TTCCCHHHHHHHHHHHHH
T ss_pred             -c-cCCCCHHHHHHHHHHHHH
Confidence             2 223344555666666643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.65  E-value=8.7e-07  Score=98.79  Aligned_cols=162  Identities=14%  Similarity=0.078  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      ...|+.|-..|.+.|++++|++.|++..+.  .|+ ..+|+.|-.+|.+.                |++++|++.|++..
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~----------------g~~~eA~~~~~~Al   70 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQ----------------GKLQEALMHYKEAI   70 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHH
Confidence            345999999999999999999999999877  444 56676666677775                69999999999998


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H
Q 007684          183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-E  260 (593)
Q Consensus       183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~  260 (593)
                      +.. +-+..+|..+..++.+.|++++|.+.|++..+.  .|+ ...|+.+..+|.+.|++++|.+.|++..+..  |+ .
T Consensus        71 ~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~  145 (723)
T 4gyw_A           71 RIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFP  145 (723)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCH
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh
Confidence            765 456789999999999999999999999999873  466 5789999999999999999999999988643  54 5


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          261 PELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ..+..|..+|...|++++|.+.++++.+
T Consensus       146 ~a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          146 DAYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence            6689999999999999999998888765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.64  E-value=5.6e-07  Score=81.95  Aligned_cols=161  Identities=12%  Similarity=0.017  Sum_probs=133.1

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+-..|.+.|++++|...|++.+       ...+.....+..+...|.+.|++++|+..+......... +...+..+-
T Consensus         9 ~~lG~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~   80 (184)
T 3vtx_A            9 MDIGDKKRTKGDFDGAIRAYKKVL-------KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG   80 (184)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence            667778999999999999997776       444566778999999999999999999999998876322 344444444


Q ss_pred             HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-c
Q 007684          147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-L  225 (593)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~  225 (593)
                      ..+...                ++.+.|.+.+.+..... +-+..++..+...+.+.|++++|.+.|++..+..  |+ .
T Consensus        81 ~~~~~~----------------~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~  141 (184)
T 3vtx_A           81 SANFMI----------------DEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFI  141 (184)
T ss_dssp             HHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred             HHHHHc----------------CCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhh
Confidence            455554                58999999999988765 5678889999999999999999999999998743  54 5


Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          226 RSYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      .+|..+...|.+.|+.++|.+.|++..+.
T Consensus       142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          142 RAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            78999999999999999999999998763

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.63  E-value=3.8e-07  Score=88.47  Aligned_cols=195  Identities=7%  Similarity=-0.081  Sum_probs=149.9

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS--QHHYNV  144 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~  144 (593)
                      ......+...|++++|...+.+.+       ...+.....+..+...|...|++++|+..|+++.+.+-.++  ...|..
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l-------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   79 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLE-------AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY   79 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHH-------HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHH-------HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence            345567889999999999997666       23333444688888899999999999999999988542222  234666


Q ss_pred             HHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684          145 LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK  224 (593)
Q Consensus       145 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  224 (593)
                      +-..+...                |++++|.+.|++..+.. +.+..++..+...|...|++++|.+.+++..+.  .|+
T Consensus        80 lg~~~~~~----------------~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~  140 (272)
T 3u4t_A           80 YGKILMKK----------------GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTT  140 (272)
T ss_dssp             HHHHHHHT----------------TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCC
T ss_pred             HHHHHHHc----------------ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCC
Confidence            66667665                59999999999998865 456688999999999999999999999998775  354


Q ss_pred             -cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHc
Q 007684          225 -LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKK---VDKVYEILHRLRTL  289 (593)
Q Consensus       225 -~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~---~~~a~~~l~~m~~~  289 (593)
                       ...|..+...+...+++++|.+.|++..+..  |+ ...+..+..++...|+   .++|...+++..+.
T Consensus       141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  208 (272)
T 3u4t_A          141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV  208 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence             4566666624445569999999999998643  43 5667778888888887   88888888888764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.63  E-value=1.7e-06  Score=86.16  Aligned_cols=169  Identities=11%  Similarity=0.068  Sum_probs=127.3

Q ss_pred             CCCCHHHHHHHHHHHH-------cCCCH-------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCc
Q 007684          100 RESPEGVLRHKLDMCS-------KRGDV-------FEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRE  164 (593)
Q Consensus       100 ~~~~~~~~~~li~~~~-------~~g~~-------~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~  164 (593)
                      .+.....|..+...+.       +.|++       ++|..+|++..+. +.| +...|..+...+...            
T Consensus        46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~------------  112 (308)
T 2ond_A           46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESR------------  112 (308)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHT------------
T ss_pred             cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhc------------
Confidence            3556666777666665       45885       9999999998873 134 456787777777775            


Q ss_pred             ccccccHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHH-HhcCCh
Q 007684          165 NDSNLGLKRGFEIFQQMITDKVDPN-EA-TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF-CKLGNT  241 (593)
Q Consensus       165 ~~~~g~~~~a~~l~~~M~~~g~~p~-~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~-~~~g~~  241 (593)
                          |++++|.++|++..+.  .|+ .. .|..++..+.+.|++++|..+|++..+..- ++...|....... ...|+.
T Consensus       113 ----~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~  185 (308)
T 2ond_A          113 ----MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDK  185 (308)
T ss_dssp             ----TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCH
T ss_pred             ----CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCH
Confidence                5999999999999974  343 33 899999999999999999999999987432 2333443322221 236999


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       242 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      ++|.++|++..+.. .-+...|..++..+.+.|+.++|..+|++..+.
T Consensus       186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99999999987642 125677899999999999999999999998774

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.60  E-value=5.1e-06  Score=78.40  Aligned_cols=153  Identities=12%  Similarity=-0.012  Sum_probs=124.3

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      ++..+..+-..+.+.|++++|+..|++..+..-.++...+..+-.++...                |++++|++.|++..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~----------------~~~~~A~~~~~~al   69 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNI----------------KKYKEAADYFDIAI   69 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHh----------------hcHHHHHHHHHHHH
Confidence            45678888889999999999999999998875436776666655566665                69999999999998


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-c-------ccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-L-------RSYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      +.. +-+..++..+...+...|++++|.+.+++..+..  |+ .       ..|..+-..+.+.|+.++|.+.|++..+.
T Consensus        70 ~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  146 (228)
T 4i17_A           70 KKN-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV  146 (228)
T ss_dssp             HTT-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HhC-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence            765 4466789999999999999999999999998732  54 2       45777888899999999999999999854


Q ss_pred             CCCCC---HHHHHHHHHHHHhcCCH
Q 007684          255 GVVPE---EPELSALLKLSVDAKKV  276 (593)
Q Consensus       255 g~~p~---~~t~~~Ll~~~~~~g~~  276 (593)
                        .|+   ...+..+..+|...|..
T Consensus       147 --~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          147 --TSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCcccHHHHHHHHHHHHHHHHH
Confidence              466   35577888888887776

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.59  E-value=1.8e-06  Score=73.06  Aligned_cols=127  Identities=14%  Similarity=0.095  Sum_probs=58.3

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      +..+...+...|++++|..+|+++.+.+ +.+...+..+...+...                |++++|.++|+++...+ 
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~----------------~~~~~A~~~~~~~~~~~-   65 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ----------------GDYDEAIEYYQKALELD-   65 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHh----------------cCHHHHHHHHHHHHHHC-
Confidence            3444455555555555555555554432 11333344433333332                35555555555554433 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG  252 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~  252 (593)
                      +.+...+..+...+...|++++|.++++++.+... .+..++..+...|.+.|+.++|.+.++++.
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            23344444555555555555555555555444221 123334444444444444444444444443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.56  E-value=4e-07  Score=101.55  Aligned_cols=165  Identities=8%  Similarity=0.027  Sum_probs=139.1

Q ss_pred             ccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-
Q 007684           61 SADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-  137 (593)
Q Consensus        61 ~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-  137 (593)
                      .|+...  +.|-..|.+.|++++|+..|++.+       +..+.....|+.+-.+|.+.|++++|+..|++..+.  .| 
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl-------~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~   75 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKAL-------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT   75 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence            344444  888889999999999999997776       444566778999999999999999999999999876  44 


Q ss_pred             CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684          138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK  217 (593)
Q Consensus       138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~  217 (593)
                      +...|+.|-.++...                |++++|++.|++..+.. +-+..+|+.+..+|.+.|++++|.+.|++..
T Consensus        76 ~~~a~~nLg~~l~~~----------------g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al  138 (723)
T 4gyw_A           76 FADAYSNMGNTLKEM----------------QDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTAL  138 (723)
T ss_dssp             CHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456777776677776                69999999999998765 4567899999999999999999999999998


Q ss_pred             hCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          218 SFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       218 ~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      +  +.|+ ...|..+..+|...|++++|.+.+++..+
T Consensus       139 ~--l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          139 K--LKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             H--HCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             H--hCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence            7  3476 57899999999999999999998888753

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.54  E-value=2.8e-06  Score=71.80  Aligned_cols=117  Identities=11%  Similarity=0.066  Sum_probs=101.0

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|.++|+++.+.. +.+..++..+...+...|++++|..+++++...+- .+...+..+...+...|++++|.+.+
T Consensus        15 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~   92 (136)
T 2fo7_A           15 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYY   92 (136)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHhcCHHHHHHHH
Confidence            59999999999998765 45778899999999999999999999999987542 34567888999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +++.... ..+...+..+...+...|+.++|...++++.+
T Consensus        93 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           93 QKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            9998654 23567788899999999999999999999876

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.54  E-value=1.8e-06  Score=91.85  Aligned_cols=167  Identities=13%  Similarity=-0.026  Sum_probs=128.7

Q ss_pred             CCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684          101 ESPEGVLRHKLDMCSKRGDV-FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ  179 (593)
Q Consensus       101 ~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~  179 (593)
                      ......+..+-..+...|++ ++|++.|++..+.. +-+...|..+-.+|...                |++++|.+.|+
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~----------------g~~~~A~~~~~  161 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKK----------------GDVTSAHTCFS  161 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH----------------TCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc----------------CCHHHHHHHHH
Confidence            34556678888888888998 99999998887763 12456666666666665                58899999998


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhc--------CCh
Q 007684          180 QMITDKVDPNEATFTSVARLAVAK---------EDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKL--------GNT  241 (593)
Q Consensus       180 ~M~~~g~~p~~~ty~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~--------g~~  241 (593)
                      +..+..  |+..++..+...+...         |++++|.+.+++..+..  |+ ...|..+..+|...        |++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            888764  6678888888888888         88899999998887743  44 56788888888888        888


Q ss_pred             hHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          242 DKAYEVDAHMGESGVV--PEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       242 ~~A~~l~~~m~~~g~~--p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ++|.+.|++..+..-.  -+...|..+..+|...|++++|.+.|++..+
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  286 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA  286 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999988888764310  2667788888888889999999888888766

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.51  E-value=1e-06  Score=90.69  Aligned_cols=210  Identities=11%  Similarity=0.059  Sum_probs=163.8

Q ss_pred             CCChhhHHhhcCCccccch--HHHHHHHhcCCC-cccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHH
Q 007684           48 FTKPITDIKQNRFSADLTT--GLCTLAFSKKST-VNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEAL  124 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~~~--~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  124 (593)
                      +...+....+  +.|+..+  +.+-.+|...|+ +++|+..+.+.+       ...+.....|+.+-.++.+.|++++|+
T Consensus       116 Al~~~~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al-------~l~P~~~~a~~~~g~~~~~~g~~~eAl  186 (382)
T 2h6f_A          116 AFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII-------EEQPKNYQVWHHRRVLVEWLRDPSQEL  186 (382)
T ss_dssp             HHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred             HHHHHHHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH-------HHCCCCHHHHHHHHHHHHHccCHHHHH
Confidence            3344444433  3455555  778888999997 999999997777       455667778999999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-c
Q 007684          125 RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA-K  203 (593)
Q Consensus       125 ~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~-~  203 (593)
                      ..|+++.+..- -+...|..+-.++...                |++++|++.|+++.+.. +-+..+|+.+..++.. .
T Consensus       187 ~~~~kal~ldP-~~~~a~~~lg~~~~~~----------------g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~  248 (382)
T 2h6f_A          187 EFIADILNQDA-KNYHAWQHRQWVIQEF----------------KLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT  248 (382)
T ss_dssp             HHHHHHHHHCT-TCHHHHHHHHHHHHHH----------------TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCc-cCHHHHHHHHHHHHHc----------------CChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence            99999998742 2667777766677665                58999999999999877 5678899999999999 6


Q ss_pred             CChHHH-----HHHHHHHHhCCCCCC-cccHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 007684          204 EDPEMA-----FDLVKQMKSFGIPPK-LRSYGPALFGFCKLG--NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK-  274 (593)
Q Consensus       204 g~~~~A-----~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g-  274 (593)
                      |..++|     ++.+++...  +.|+ ...|+.+...+.+.|  +.++|.+.+.++ + .-..+...+..|..+|.+.| 
T Consensus       249 ~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~  324 (382)
T 2h6f_A          249 GYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLE  324 (382)
T ss_dssp             CSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhc
Confidence            665888     488888876  3465 567888888888888  689999999988 3 23345667889999998864 


Q ss_pred             --------CHHHHHHHHHHH-HH
Q 007684          275 --------KVDKVYEILHRL-RT  288 (593)
Q Consensus       275 --------~~~~a~~~l~~m-~~  288 (593)
                              ..++|.++++++ .+
T Consensus       325 ~~~~~~~~~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          325 NQCDNKEDILNKALELCEILAKE  347 (382)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchHHHHHHHHHHHHHHHHH
Confidence                    358999999998 44

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.49  E-value=3.3e-07  Score=94.86  Aligned_cols=275  Identities=9%  Similarity=-0.025  Sum_probs=181.3

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE----GVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS  138 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~  138 (593)
                      ..+-..+...|++++|...+.+.+       .....+.    ..+..+...|...|++++|+..|++..+.    +-.|.
T Consensus        52 ~~~g~~~~~~g~~~~A~~~~~~al-------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           52 ALEGERLCNAGDCRAGVAFFQAAI-------QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-------HHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHH-------HhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            455667889999999999997766       1122232    35888899999999999999999987643    22222


Q ss_pred             -HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-------
Q 007684          139 -QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD----K-VDPNEATFTSVARLAVAKED-------  205 (593)
Q Consensus       139 -~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~----g-~~p~~~ty~~li~~~~~~g~-------  205 (593)
                       ...+..+-..|...                |++++|.+.|++....    + .+....++..+...|...|+       
T Consensus       125 ~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  188 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVM----------------GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP  188 (411)
T ss_dssp             HHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccc
Confidence             23444444466654                6999999999987653    1 12234578889999999999       


Q ss_pred             ----------hHHHHHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHH
Q 007684          206 ----------PEMAFDLVKQMKS----FGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGV-VPE----EPELSA  265 (593)
Q Consensus       206 ----------~~~A~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~  265 (593)
                                +++|.+.+++..+    .+-.|. ..++..+...|...|++++|.+.+++..+..- .++    ...+..
T Consensus       189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  268 (411)
T 4a1s_A          189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN  268 (411)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence                      9999999988753    122122 35788899999999999999999998864211 112    236888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHccCCC-C----HHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccc
Q 007684          266 LLKLSVDAKKVDKVYEILHRLRTLVRQV-S----ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWL  340 (593)
Q Consensus       266 Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~----~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~  340 (593)
                      +..+|...|++++|...+++..+..... +    ..++..+...+...+..+.+..     .+.+++...          
T Consensus       269 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-----~~~~al~~~----------  333 (411)
T 4a1s_A          269 LGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIE-----YHNRHLAIA----------  333 (411)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-----HHHHHHHHH----------
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHHHH----------
Confidence            9999999999999999999886632211 1    1223333333322222211111     111111100          


Q ss_pred             cCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHh
Q 007684          341 GSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGR  404 (593)
Q Consensus       341 ~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~  404 (593)
                                               ......+.....+..+...|...|+.++|.+.|++.++.
T Consensus       334 -------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          334 -------------------------QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             -------------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -------------------------HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence                                     000011234556777788899999999999999998874

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.47  E-value=2.4e-06  Score=87.75  Aligned_cols=233  Identities=8%  Similarity=-0.047  Sum_probs=157.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          110 KLDMCSKRGDVFEALRLYDDARSNG-ITLS----QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       110 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      .-..+...|++++|+..|++..+.- -.++    ..+|..+-..|...                |+.++|.+.+++..+.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~----------------~~~~~A~~~~~~al~~  172 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYM----------------KQTYFSMDYARQAYEI  172 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHH
Confidence            4556788899999999999987641 1122    23444444566665                6999999999987652


Q ss_pred             --CC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          185 --KV----DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       185 --g~----~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                        ..    .....+++.+...|...|++++|.+.+++..+.    +-.+. ..+|..+...|...|+.++|.+.+++..+
T Consensus       173 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~  252 (383)
T 3ulq_A          173 YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA  252 (383)
T ss_dssp             HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              11    112357889999999999999999999998642    11111 24788899999999999999999999875


Q ss_pred             C----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CHHH---HHHHHHHHhcchhhhhccccchhhhHH
Q 007684          254 S----GV-VPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV-SEST---FKIIEDWFDSVDAAEIGVLNWDVSKVR  324 (593)
Q Consensus       254 ~----g~-~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~~~t---~~~l~~~~~~~~~~~~~~~~~d~~~~~  324 (593)
                      .    +. .....++..+..+|.+.|+.++|...+++..+..... ++..   +..+-..+...+..             
T Consensus       253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------  319 (383)
T 3ulq_A          253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE-------------  319 (383)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH-------------
T ss_pred             HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH-------------
Confidence            2    33 2335568899999999999999999999886632211 2211   22222222211110             


Q ss_pred             HhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC---CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 007684          325 EGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID---IDPRETENFASSLSNLACQREVRSDFNKFQEW  401 (593)
Q Consensus       325 ~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~---l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~  401 (593)
                                                        ....+++..+.   ..+.....+..+...|...|+.++|.+.|++.
T Consensus       320 ----------------------------------~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a  365 (383)
T 3ulq_A          320 ----------------------------------EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKV  365 (383)
T ss_dssp             ----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----------------------------------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                                              01122222222   23344556677778899999999999999998


Q ss_pred             HHhc
Q 007684          402 LGRH  405 (593)
Q Consensus       402 l~~~  405 (593)
                      ++..
T Consensus       366 l~~~  369 (383)
T 3ulq_A          366 EQVR  369 (383)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8743

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.40  E-value=1.6e-06  Score=86.09  Aligned_cols=276  Identities=12%  Similarity=0.010  Sum_probs=178.6

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP----EGVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS  138 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~  138 (593)
                      ...-..+...|++++|...+.+.+.       ..+.+    ...+..+...+...|++++|.+++++..+.    +-.|.
T Consensus         9 ~~~g~~~~~~g~~~~A~~~~~~al~-------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   81 (338)
T 3ro2_A            9 ALEGERLCKSGDCRAGVSFFEAAVQ-------VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   81 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH-------HCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHh-------hCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence            3445578889999999999977661       12223    245888999999999999999999986543    22222


Q ss_pred             -HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC-------
Q 007684          139 -QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV-DPN----EATFTSVARLAVAKED-------  205 (593)
Q Consensus       139 -~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~-~p~----~~ty~~li~~~~~~g~-------  205 (593)
                       ..++..+-..+...                |++++|.+.|++..+... .++    ..++..+...+...|+       
T Consensus        82 ~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  145 (338)
T 3ro2_A           82 EAKASGNLGNTLKVL----------------GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGP  145 (338)
T ss_dssp             HHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSC
T ss_pred             HHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchh
Confidence             33444444566654                699999999998764210 122    3478889999999999       


Q ss_pred             -------------hHHHHHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHH
Q 007684          206 -------------PEMAFDLVKQMKS----FGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVP-EEPE  262 (593)
Q Consensus       206 -------------~~~A~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t  262 (593)
                                   +++|.+.+++...    .+-.|. ..++..+...|...|++++|.+.+++..+.    +..+ ....
T Consensus       146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  225 (338)
T 3ro2_A          146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA  225 (338)
T ss_dssp             C----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence                         9999999988753    121122 357888889999999999999999987642    1111 1236


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-C----HHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCccccc
Q 007684          263 LSALLKLSVDAKKVDKVYEILHRLRTLVRQV-S----ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQ  337 (593)
Q Consensus       263 ~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~----~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~  337 (593)
                      +..+...+...|+.++|...+++..+..... +    ..++..+...+...+..+.+.     ..+.+++...       
T Consensus       226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-----~~~~~a~~~~-------  293 (338)
T 3ro2_A          226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI-----DYHLKHLAIA-------  293 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHH-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH-----HHHHHHHHHH-------
Confidence            8888899999999999999999886532211 1    112233333332222211111     1111111100       


Q ss_pred             ccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          338 GWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       338 ~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                                                  ....-.+.....+..+...|...|+.++|.+.|++.++..
T Consensus       294 ----------------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          294 ----------------------------QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             ----------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             ----------------------------HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence                                        0000112334567777788999999999999999988743

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.38  E-value=8.9e-06  Score=85.71  Aligned_cols=291  Identities=10%  Similarity=-0.071  Sum_probs=178.1

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhh--hcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C-CCC-
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKK--ARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN-----G-ITL-  137 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p-  137 (593)
                      |.|-..+...|+.++|.+.+.+.+.......  ........+|+.+-..|...|++++|...+++..+.     + ..+ 
T Consensus        55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~  134 (472)
T 4g1t_A           55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE  134 (472)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence            8888899999999999999977652211111  112333456999999999999999999999987643     1 112 


Q ss_pred             CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHH
Q 007684          138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLA---VAKEDPEMAFDLVK  214 (593)
Q Consensus       138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~---~~~g~~~~A~~l~~  214 (593)
                      ...+|+.+-.++...+              .+++++|.+.|++..+.. +-+...+..+..++   ...++.++|++.++
T Consensus       135 ~~~~~~~~g~~~~~~~--------------~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~  199 (472)
T 4g1t_A          135 SPELDCEEGWTRLKCG--------------GNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLR  199 (472)
T ss_dssp             CHHHHHHHHHHHHHHC--------------TTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred             hHHHHHHHHHHHHHHc--------------cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            2344443322222211              148999999999988765 33555565555553   45678889999999


Q ss_pred             HHHhCCCCCC-cccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          215 QMKSFGIPPK-LRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       215 ~m~~~g~~p~-~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      +..+.  .|+ ..++..+...+..    .|+.++|.+.+++..... +.+...+..+...|...|+.++|...+++..+.
T Consensus       200 ~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  276 (472)
T 4g1t_A          200 QAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY  276 (472)
T ss_dssp             HHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            88774  354 4556655555554    467789999999887643 235566889999999999999999999998773


Q ss_pred             cCCCC-HHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccc-
Q 007684          290 VRQVS-ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVC-  367 (593)
Q Consensus       290 ~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~-  367 (593)
                        .|+ ...+..+-..|.....................                               ....+.++.. 
T Consensus       277 --~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~A~~~~  323 (472)
T 4g1t_A          277 --IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL-------------------------------LELIGHAVAHL  323 (472)
T ss_dssp             --STTCHHHHHHHHHHHHHHHHHHHHC------CHHHH-------------------------------HHHHHHHHHHH
T ss_pred             --CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------------------------------HhhHHHHHHHH
Confidence              343 33343333333221110000000000000000                               0001111111 


Q ss_pred             ---cCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCc
Q 007684          368 ---IDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPF  408 (593)
Q Consensus       368 ---~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~  408 (593)
                         +.+.|.....+..+...|...|+.++|++.|++.++...++
T Consensus       324 ~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~  367 (472)
T 4g1t_A          324 KKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP  367 (472)
T ss_dssp             HHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred             HHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence               11334444556677778889999999999999998865443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.36  E-value=1.1e-05  Score=92.95  Aligned_cols=216  Identities=12%  Similarity=0.161  Sum_probs=131.2

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|++.|.+-      -|...|..++.+|.+.|++++|.+.+...++..  ++....+.++.+|++.+++++..++.
T Consensus      1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A         1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred             CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence            6888888888553      467778888889999999999999888766643  44444556888888888887544443


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhh
Q 007684          249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIV  328 (593)
Q Consensus       249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~  328 (593)
                      .       .++...|..+...|...|++++|..+|...         ..|..+...+...+..+.+-.     ...++  
T Consensus      1191 ~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE-----aarKA-- 1247 (1630)
T 1xi4_A         1191 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD-----GARKA-- 1247 (1630)
T ss_pred             h-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH-----HHHHh--
Confidence            1       256677777888888888898888888884         366666666655543222111     11111  


Q ss_pred             cCCCcccccccccCCceEEEEeccc--CCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684          329 RGGGGWHGQGWLGSGKWRVERTQID--ENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG  406 (593)
Q Consensus       329 ~~g~~~~g~~~~~~~~~~v~~~~i~--~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~  406 (593)
                        +   +...|..     +....++  .+.....|+..   +..   +...+..++.-|...|.+++|+.+|+.-+.   
T Consensus      1248 --~---n~~aWke-----v~~acve~~Ef~LA~~cgl~---Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~--- 1308 (1630)
T 1xi4_A         1248 --N---STRTWKE-----VCFACVDGKEFRLAQMCGLH---IVV---HADELEELINYYQDRGYFEELITMLEAALG--- 1308 (1630)
T ss_pred             --C---CHHHHHH-----HHHHHhhhhHHHHHHHHHHh---hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---
Confidence              0   0011100     0000000  01111111211   112   234455888889999999999999987664   


Q ss_pred             CcCeeeeccceecccCC-----CCChhhHHHHHHHHHh
Q 007684          407 PFDAVIDGANVGLVNQH-----NFSFYQLNTVVNRLRQ  439 (593)
Q Consensus       407 ~~d~vidg~nv~~~~~~-----~~~~~~l~~vv~~l~~  439 (593)
                           ++.++++++..-     +.+++.+.+.++.+..
T Consensus      1309 -----LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A         1309 -----LERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred             -----cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                 234444444222     3466777777777776

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.36  E-value=1.7e-06  Score=88.82  Aligned_cols=203  Identities=9%  Similarity=-0.068  Sum_probs=145.6

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----H
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP--EGVLRHKLDMCSKRGDVFEALRLYDDARSNGI-TLS----Q  139 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~  139 (593)
                      ..+...|...|++++|...+.+.+..... .  ...+  ...+..+...|...|++++|...+++..+..- .++    .
T Consensus        51 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  127 (406)
T 3sf4_A           51 SQLGNAYFYLHDYAKALEYHHHDLTLART-I--GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA  127 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHh-c--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence            67778899999999999999776522111 1  1112  23488888999999999999999998765410 012    2


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCCCccccccc--------------------HHHHHHHHHHHHh----CCCCC-CHHHHH
Q 007684          140 HHYNVLLYVCSCKCGSESSENGDRENDSNLG--------------------LKRGFEIFQQMIT----DKVDP-NEATFT  194 (593)
Q Consensus       140 ~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~--------------------~~~a~~l~~~M~~----~g~~p-~~~ty~  194 (593)
                      .++..+-..|...                |+                    +++|.+.+++...    .+-.| ...++.
T Consensus       128 ~~~~~l~~~~~~~----------------g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  191 (406)
T 3sf4_A          128 RALYNLGNVYHAK----------------GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFG  191 (406)
T ss_dssp             HHHHHHHHHHHHH----------------HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc----------------CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            3455555566554                57                    8999998887653    22112 234788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHH
Q 007684          195 SVARLAVAKEDPEMAFDLVKQMKSFGI-PPK----LRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVPE-EPELS  264 (593)
Q Consensus       195 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~  264 (593)
                      .+...+...|++++|.+.+++..+..- .++    ..+|..+...|...|+.++|.+.+++....    +-.+. ..++.
T Consensus       192 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  271 (406)
T 3sf4_A          192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY  271 (406)
T ss_dssp             HHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHH
Confidence            899999999999999999999864210 111    237888999999999999999999987642    21111 45688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          265 ALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       265 ~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .+...|...|++++|...+++..+
T Consensus       272 ~la~~~~~~g~~~~A~~~~~~a~~  295 (406)
T 3sf4_A          272 SLGNTYTLLQDYEKAIDYHLKHLA  295 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHH
Confidence            889999999999999999988765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.32  E-value=1e-05  Score=82.92  Aligned_cols=165  Identities=9%  Similarity=-0.084  Sum_probs=122.5

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          110 KLDMCSKRGDVFEALRLYDDARSNGI-TLS----QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       110 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      .-..+...|++++|+..|+++.+.-- .++    ..++..+-..|...                |+.++|.+.+++..+.
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~----------------~~~~~A~~~~~~al~~  170 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHM----------------KQTHVSMYHILQALDI  170 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHc----------------CCcHHHHHHHHHHHHH
Confidence            34456788999999999999876521 122    23444444466665                5999999999987642


Q ss_pred             ----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          185 ----K-VDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       185 ----g-~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                          + ..+ ...+++.+...|...|++++|.+.+++..+.    +-.+. ..++..+...|...|+.++|.+.+++..+
T Consensus       171 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          171 YQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                1 111 2457889999999999999999999988642    22111 35788899999999999999999999875


Q ss_pred             C----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 007684          254 S----GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV  290 (593)
Q Consensus       254 ~----g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~  290 (593)
                      .    +......++..+..++.+.|+.++|...+++..+..
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  291 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI  291 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            1    222235668889999999999999999999987743

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.31  E-value=4e-06  Score=82.87  Aligned_cols=203  Identities=10%  Similarity=0.021  Sum_probs=138.4

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP-EGVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QH  140 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~  140 (593)
                      .-....|...|++++|...|.+.+....+  .+.... ...|+.+...|.+.|++++|+..|++..+.    |-... ..
T Consensus        41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           41 VQAATIYRLRKELNLAGDSFLKAADYQKK--AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34455688899999999999776622211  111111 335999999999999999999999987654    21111 23


Q ss_pred             HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684          141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD-PN----EATFTSVARLAVAKEDPEMAFDLVKQ  215 (593)
Q Consensus       141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~  215 (593)
                      +|+.+-.+|...               .|++++|++.|++..+.... .+    ..+++.+...+...|++++|...|++
T Consensus       119 ~~~~lg~~~~~~---------------lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  183 (292)
T 1qqe_A          119 FKFELGEILEND---------------LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (292)
T ss_dssp             HHHHHHHHHHHT---------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh---------------hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            555555666662               04999999999987653211 11    35788999999999999999999999


Q ss_pred             HHhCCCCCCcc------cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hcCCHHHHHH
Q 007684          216 MKSFGIPPKLR------SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE------PELSALLKLSV--DAKKVDKVYE  281 (593)
Q Consensus       216 m~~~g~~p~~~------ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~Ll~~~~--~~g~~~~a~~  281 (593)
                      ..+........      .|..+..++...|+.++|...|++..+  +.|+.      ..+..|+.++.  ..+++++|..
T Consensus       184 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~  261 (292)
T 1qqe_A          184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK  261 (292)
T ss_dssp             HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred             HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            98743222221      467788889999999999999999874  22332      13455666664  3456778887


Q ss_pred             HHHHHHH
Q 007684          282 ILHRLRT  288 (593)
Q Consensus       282 ~l~~m~~  288 (593)
                      .|+++..
T Consensus       262 ~~~~~~~  268 (292)
T 1qqe_A          262 EFDNFMR  268 (292)
T ss_dssp             HHTTSSC
T ss_pred             HhccCCc
Confidence            7766533

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.30  E-value=1.5e-05  Score=83.91  Aligned_cols=287  Identities=9%  Similarity=-0.024  Sum_probs=134.2

Q ss_pred             cCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007684           75 KKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLD---MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC  151 (593)
Q Consensus        75 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~  151 (593)
                      ..+++++|...|.+.+       ...+.....+..+..   .+...++.++|++.+++..+.. +.+...+..+-..+..
T Consensus       150 ~~~~y~~A~~~~~kal-------~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~  221 (472)
T 4g1t_A          150 GGNQNERAKVCFEKAL-------EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHK  221 (472)
T ss_dssp             CTTHHHHHHHHHHHHH-------HHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHH
Confidence            3456777877777766       222333333333322   2445677777777777766552 1234444433333332


Q ss_pred             cCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHH
Q 007684          152 KCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGP  230 (593)
Q Consensus       152 ~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~  230 (593)
                      ..            ...|+.++|.+++++..... +.+..++..+...|...|++++|.+.+++..+.  .|+ ..+|..
T Consensus       222 ~~------------~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~  286 (472)
T 4g1t_A          222 MR------------EEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQ  286 (472)
T ss_dssp             CC------------------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred             HH------------hhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHH
Confidence            21            11246677777777766554 455667777777777777777777777777653  244 344554


Q ss_pred             HHHHHHhc-------------------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684          231 ALFGFCKL-------------------GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR  291 (593)
Q Consensus       231 li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~  291 (593)
                      +...|...                   +..++|...+++..+... .+...+..+...|...|++++|.+.|++..+.. 
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~-  364 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKE-  364 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC-
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC-
Confidence            54444321                   234566777766654321 122336666777777777777777777766532 


Q ss_pred             CCCHHHHHHHHHHHhcchhhhhccccchh--hhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC
Q 007684          292 QVSESTFKIIEDWFDSVDAAEIGVLNWDV--SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID  369 (593)
Q Consensus       292 ~~~~~t~~~l~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~  369 (593)
                       |+......+...+.....  ...+.++.  ....+++.-......   +         .......     -.-..+.+.
T Consensus       365 -~~~~~~~~~~~~~~~~~~--~~~~~~~~Ai~~y~kal~i~~~~~~---~---------~~~~~~l-----~~~~~~~l~  424 (472)
T 4g1t_A          365 -LTPVAKQLLHLRYGNFQL--YQMKCEDKAIHHFIEGVKINQKSRE---K---------EKMKDKL-----QKIAKMRLS  424 (472)
T ss_dssp             -CCHHHHHHHHHHHHHHHH--HTSSCHHHHHHHHHHHHHSCCCCHH---H---------HHHHHHH-----HHHHHHHHH
T ss_pred             -CCChHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHhcCcccHH---H---------HHHHHHH-----HHHHHHHHH
Confidence             333222222111111100  00111111  112222211100000   0         0000000     000011223


Q ss_pred             CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684          370 IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG  406 (593)
Q Consensus       370 l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~  406 (593)
                      ..|.+...|..+...|...|+.++|++.|++.++.+.
T Consensus       425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~  461 (472)
T 4g1t_A          425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS  461 (472)
T ss_dssp             HCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            4566778888898999999999999999999998654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.29  E-value=0.00012  Score=68.85  Aligned_cols=116  Identities=10%  Similarity=-0.028  Sum_probs=100.2

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      |++++|++.|++..+...+++...+..+..++...|++++|.+.+++..+.  .|+ ...|..+...|...|+.++|.+.
T Consensus        21 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~   98 (228)
T 4i17_A           21 KNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQEYIAT   98 (228)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHHHHHHH
Confidence            699999999999988774478888888999999999999999999999874  355 57888899999999999999999


Q ss_pred             HHHHHhCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          248 DAHMGESGVVPE-E-------PELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       248 ~~~m~~~g~~p~-~-------~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +++..+..  |+ .       ..|..+-..+...|++++|.+.+++..+
T Consensus        99 ~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A           99 LTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             HHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence            99988643  33 3       4577788888999999999999999976

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.26  E-value=4.1e-05  Score=82.37  Aligned_cols=185  Identities=14%  Similarity=0.094  Sum_probs=142.5

Q ss_pred             CCCcc-------cCCCCcccccchHHhhhh-cCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-H-HHHHHH
Q 007684           76 KSTVN-------ESSAPNTGTMSNKSKKKA-RRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-Q-HHYNVL  145 (593)
Q Consensus        76 ~g~~~-------~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~-~ty~~l  145 (593)
                      .|+++       +|..++...+       . ..+.....+..++..+.+.|++++|..+|+++.+.  .|+ . ..|..+
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al-------~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~  362 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAI-------STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQY  362 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHT-------TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHH-------HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHH
Confidence            68877       7777775554       2 23345667999999999999999999999999986  554 2 467777


Q ss_pred             HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCC
Q 007684          146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARL-AVAKEDPEMAFDLVKQMKSFGIPPK  224 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~  224 (593)
                      ...+.+.                |++++|.++|++..+.. +.+...|...+.. +...|+.++|..+|++..+..  |+
T Consensus       363 ~~~~~~~----------------~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~  423 (530)
T 2ooe_A          363 MKFARRA----------------EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GD  423 (530)
T ss_dssp             HHHHHHH----------------HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHh----------------cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CC
Confidence            7766654                68999999999998764 2233333333222 346899999999999987632  54


Q ss_pred             -cccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          225 -LRSYGPALFGFCKLGNTDKAYEVDAHMGESG-VVPE--EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       225 -~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                       ...|..++..+.+.|+.++|..+|++....+ ..|+  ...|...+......|+.+.+..++.++.+
T Consensus       424 ~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          424 IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             6788889999999999999999999998763 3343  45788889988899999999999999876

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.26  E-value=0.00012  Score=72.22  Aligned_cols=180  Identities=9%  Similarity=0.026  Sum_probs=129.0

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEG-VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l  145 (593)
                      -++.++|...|+.....                ..+|.. .+..+.. |...+    |+..|++..+.+ .++..++..+
T Consensus        49 ~~~~Rs~iAlg~~~~~~----------------~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~-~~~~~~~~~l  106 (310)
T 3mv2_B           49 FYKAKTLLALGQYQSQD----------------PTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK-QNSPYELYLL  106 (310)
T ss_dssp             HHHHHHHHHTTCCCCCC----------------SSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS-CCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCccCC----------------CCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC-CCCcHHHHHH
Confidence            67778999999877532                122332 3444333 33333    788888877665 4565555545


Q ss_pred             HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-
Q 007684          146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-  223 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-  223 (593)
                      -.++...                |+.++|++++.+-...|- .-+...+..++..+.+.|+.+.|.+++++|.+.  .| 
T Consensus       107 a~i~~~~----------------g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d  168 (310)
T 3mv2_B          107 ATAQAIL----------------GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IED  168 (310)
T ss_dssp             HHHHHHH----------------TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCH
T ss_pred             HHHHHHc----------------CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence            5566665                699999999999876663 236678889999999999999999999999873  46 


Q ss_pred             ----CcccHHHHHHH--HHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          224 ----KLRSYGPALFG--FCKLG--NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       224 ----~~~ty~~li~~--~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                          +..+...+..+  ....|  +..+|+.+|+++.+..  |+..+-..|+.++...|++++|.+.++.+.+
T Consensus       169 ~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          169 TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                34555556666  33334  8999999999987543  6655556666689999999999999997654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.25  E-value=0.00015  Score=77.11  Aligned_cols=191  Identities=9%  Similarity=-0.018  Sum_probs=144.0

Q ss_pred             HHHHHHHhc----CCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCC
Q 007684           67 GLCTLAFSK----KSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSK----RGDVFEALRLYDDARSNGITLS  138 (593)
Q Consensus        67 ~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~  138 (593)
                      ..|-..|..    .+++++|...|.+..       .  ..+...+..|-..|..    .++.++|..+|++..+.|   +
T Consensus        43 ~~lg~~y~~g~~~~~~~~~A~~~~~~a~-------~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           43 LELGYRYFQGNETTKDLTQAMDWFRRAA-------E--QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHH-------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             HHHHHHHHcCCCCCcCHHHHHHHHHHHH-------H--CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            444445555    677778887774443       1  1355667778888888    899999999999988876   4


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 007684          139 QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA----KEDPEMAFDLVK  214 (593)
Q Consensus       139 ~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~  214 (593)
                      ...+..|=..|..+.            ...++.++|++.|++..+.|   +..++..|...|..    .++.++|.+.|+
T Consensus       111 ~~a~~~Lg~~y~~g~------------g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  175 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGN------------GVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS  175 (490)
T ss_dssp             HHHHHHHHHHHHHTS------------SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC------------CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            455555555666521            01248999999999988876   56778888888887    789999999999


Q ss_pred             HHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 007684          215 QMKSFGIPPKLRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD----AKKVDKVYEILHRL  286 (593)
Q Consensus       215 ~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m  286 (593)
                      +..+.|   +...+..+...|..    .++.++|.+.|++..+.|   +...+..|...|..    .++.++|..+|++.
T Consensus       176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a  249 (490)
T 2xm6_A          176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS  249 (490)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            988764   45677778888887    889999999999988765   55677778888876    78899999999988


Q ss_pred             HHcc
Q 007684          287 RTLV  290 (593)
Q Consensus       287 ~~~~  290 (593)
                      .+.+
T Consensus       250 ~~~~  253 (490)
T 2xm6_A          250 AEQG  253 (490)
T ss_dssp             HTTT
T ss_pred             HHCC
Confidence            7753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.25  E-value=3.9e-05  Score=71.43  Aligned_cols=170  Identities=10%  Similarity=0.107  Sum_probs=122.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHHHccCCCCCCCCCCCcccccc
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNV----------------LLYVCSCKCGSESSENGDRENDSNL  169 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~----------------ll~~~~~~~~~~~~~~~~~~~~~~g  169 (593)
                      +-.....+.+.|++++|+..|++..+.  .|+. ..|..                +-.+|...                |
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~----------------g   68 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKN----------------R   68 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT----------------T
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC----------------C
Confidence            344455677899999999999998876  3433 33333                33355554                6


Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCC--hhHHHH
Q 007684          170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGN--TDKAYE  246 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~--~~~A~~  246 (593)
                      ++++|++.|++..+.. +-+..++..+...+...|++++|...|++..+.  .|+ ..+|..+...|...|+  .+.+..
T Consensus        69 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~  145 (208)
T 3urz_A           69 NYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLET  145 (208)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            9999999999998876 557889999999999999999999999999884  365 5678888888876654  344555


Q ss_pred             HHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684          247 VDAHMGESGVVPEEP--ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED  303 (593)
Q Consensus       247 l~~~m~~~g~~p~~~--t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~  303 (593)
                      .++...    .|+..  .+..+..++...|++++|...|++..+  ..|+......+..
T Consensus       146 ~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~  198 (208)
T 3urz_A          146 DYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK  198 (208)
T ss_dssp             HHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred             HHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence            665543    34443  334445566678999999999999976  5677655544443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.24  E-value=1.3e-05  Score=82.68  Aligned_cols=241  Identities=10%  Similarity=-0.040  Sum_probs=159.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      +..+-..+...|++++|+.+|+++.+.+.. +.    ..|..+-..|...                |++++|.+.|++..
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al  113 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYL----------------GDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH
Confidence            556777889999999999999999887322 33    3455555566664                69999999999876


Q ss_pred             hC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCC------------
Q 007684          183 TD----KV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGN------------  240 (593)
Q Consensus       183 ~~----g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~------------  240 (593)
                      +.    +- +....++..+...|...|++++|.+.+++..+.    +-.|. ..++..+...|...|+            
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~  193 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD  193 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence            53    21 223457888999999999999999999988642    11122 4578889999999999            


Q ss_pred             -----hhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC-CCHH----HHHHHHHHH
Q 007684          241 -----TDKAYEVDAHMGES----GVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ-VSES----TFKIIEDWF  305 (593)
Q Consensus       241 -----~~~A~~l~~~m~~~----g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~-~~~~----t~~~l~~~~  305 (593)
                           +++|.+.+++..+.    +-.+. ...+..+...|...|++++|...+++..+.... .+..    .+..+...+
T Consensus       194 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  273 (411)
T 4a1s_A          194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH  273 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence                 99999998886531    22122 246788889999999999999999988663221 1111    233333333


Q ss_pred             hcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHH
Q 007684          306 DSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNL  385 (593)
Q Consensus       306 ~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l  385 (593)
                      ...+..+.+..     .+.+++....                                   ...........+..+...|
T Consensus       274 ~~~g~~~~A~~-----~~~~al~~~~-----------------------------------~~~~~~~~~~~~~~la~~~  313 (411)
T 4a1s_A          274 IFLGQFEDAAE-----HYKRTLALAV-----------------------------------ELGEREVEAQSCYSLGNTY  313 (411)
T ss_dssp             HTTTCHHHHHH-----HHHHHHHHHH-----------------------------------HTTCHHHHHHHHHHHHHHH
T ss_pred             HHCcCHHHHHH-----HHHHHHHHHH-----------------------------------HcCCHHHHHHHHHHHHHHH
Confidence            32222211111     1111111000                                   0001113356677788889


Q ss_pred             hhhhhhHHhHHHHHHHHHh
Q 007684          386 ACQREVRSDFNKFQEWLGR  404 (593)
Q Consensus       386 ~~~~~~~~a~~~f~~~l~~  404 (593)
                      ...|+.++|.+.|++.++.
T Consensus       314 ~~~g~~~~A~~~~~~al~~  332 (411)
T 4a1s_A          314 TLLHEFNTAIEYHNRHLAI  332 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            9999999999999998875

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.17  E-value=6.6e-05  Score=73.97  Aligned_cols=166  Identities=11%  Similarity=0.041  Sum_probs=123.0

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684          101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ  179 (593)
Q Consensus       101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~  179 (593)
                      ..+...+..+..++...|++++|++++.+....|-.+ +...+-.++.++.+.                |+.+.|.++++
T Consensus        97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~----------------~r~d~A~k~l~  160 (310)
T 3mv2_B           97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN----------------NNVSTASTIFD  160 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT----------------TCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC----------------CCHHHHHHHHH
Confidence            3445555688888999999999999999987665322 445555666677776                59999999999


Q ss_pred             HHHhCCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 007684          180 QMITDKVDP-----NEATFTSVARLAV--AKE--DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAH  250 (593)
Q Consensus       180 ~M~~~g~~p-----~~~ty~~li~~~~--~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~  250 (593)
                      +|.+.  .|     +..+...|+.++.  ..|  +..+|+.+|+++.+.  .|+..+-..++.++.+.|++++|++.++.
T Consensus       161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~  236 (310)
T 3mv2_B          161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL  236 (310)
T ss_dssp             HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99875  46     4677777777743  334  899999999999763  26534445566689999999999999997


Q ss_pred             HHhC-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          251 MGES-----GV---VP-EEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       251 m~~~-----g~---~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +.+.     +-   .| |..++..+|..+...|+  +|.+++.++.+
T Consensus       237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~  281 (310)
T 3mv2_B          237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK  281 (310)
T ss_dssp             HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred             HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence            7642     11   24 45556677777777786  88899999987

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.16  E-value=6.8e-06  Score=74.36  Aligned_cols=77  Identities=8%  Similarity=0.078  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          209 AFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       209 A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      |...+++..+.  .|+ ...+..+...+...|+.++|.+.|+++.+..-.+ +...+..|..++...|+.++|...|++.
T Consensus        93 a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A           93 ELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            44555554442  233 3444455555555555555555555555433211 1334555555555555555555555544


Q ss_pred             H
Q 007684          287 R  287 (593)
Q Consensus       287 ~  287 (593)
                      .
T Consensus       171 l  171 (176)
T 2r5s_A          171 L  171 (176)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.15  E-value=0.00068  Score=71.91  Aligned_cols=297  Identities=10%  Similarity=-0.057  Sum_probs=187.9

Q ss_pred             CCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHH
Q 007684          102 SPEGVLRHKLDMCSK----RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI  177 (593)
Q Consensus       102 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l  177 (593)
                      .+...+..+-..|..    .+++++|+.+|++..+.|   +...+..|=..|..+.            .-.++.++|++.
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~------------g~~~~~~~A~~~  101 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGE------------GVPQDYAQAVIW  101 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------------SSCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------------CCCCCHHHHHHH
Confidence            355667777777877    899999999999998875   4556666655666521            012589999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHH
Q 007684          178 FQQMITDKVDPNEATFTSVARLAVA----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----LGNTDKAYEVDA  249 (593)
Q Consensus       178 ~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~  249 (593)
                      |++..+.|   +...+..|...|..    .+++++|.+.|++..+.|   +...+..+...|..    .++.++|.+.|+
T Consensus       102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  175 (490)
T 2xm6_A          102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS  175 (490)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            99998876   66778888888988    889999999999998865   34567777788877    789999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchh-hhHH
Q 007684          250 HMGESGVVPEEPELSALLKLSVD----AKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDV-SKVR  324 (593)
Q Consensus       250 ~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~-~~~~  324 (593)
                      +..+.|   +...+..|...|..    .++.++|.+.|++..+.+   ++.....+-..|....   .....++. ....
T Consensus       176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~---g~~~~~~~A~~~~  246 (490)
T 2xm6_A          176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGI---GVTQDYTQSRVLF  246 (490)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS---SSCCCHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC---CCCCCHHHHHHHH
Confidence            998875   67778888888887    899999999999988754   3444444444443210   01111221 2222


Q ss_pred             HhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC--CCHHHHHHHHHHHHHHhhh-----hhhHHhHHH
Q 007684          325 EGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID--IDPRETENFASSLSNLACQ-----REVRSDFNK  397 (593)
Q Consensus       325 ~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~--l~~~~~~~~~~~i~~l~~~-----~~~~~a~~~  397 (593)
                      +...+.|. ...+.+++       .......+.-+...+|++.+.  ....+...+..+-..|...     ++.++|++.
T Consensus       247 ~~a~~~~~-~~a~~~lg-------~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~  318 (490)
T 2xm6_A          247 SQSAEQGN-SIAQFRLG-------YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISW  318 (490)
T ss_dssp             HHHHTTTC-HHHHHHHH-------HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHH
T ss_pred             HHHHHCCC-HHHHHHHH-------HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHH
Confidence            22222221 11110110       001111233344555555554  2223334455555556665     788899999


Q ss_pred             HHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhh
Q 007684          398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQM  440 (593)
Q Consensus       398 f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~  440 (593)
                      |++..+.+.+ +.   -.++|.+...+-.....+.+++.+++.
T Consensus       319 ~~~a~~~~~~-~a---~~~lg~~y~~~g~~~~~~~A~~~~~~a  357 (490)
T 2xm6_A          319 YTKSAEQGDA-TA---QANLGAIYFRLGSEEEHKKAVEWFRKA  357 (490)
T ss_dssp             HHHHHHTTCH-HH---HHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCH-HH---HHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence            9988876532 21   122332211111234567777777663

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.14  E-value=3.8e-05  Score=83.44  Aligned_cols=153  Identities=10%  Similarity=-0.112  Sum_probs=94.8

Q ss_pred             CCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCC
Q 007684           76 KSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS  155 (593)
Q Consensus        76 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~  155 (593)
                      .|++++|...+.+.+       ...+.....+..+...+.+.|++++|.+.|++..+.. +-+...|..+-.+|...   
T Consensus         2 ~g~~~~A~~~~~~al-------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~---   70 (568)
T 2vsy_A            2 TADGPRELLQLRAAV-------RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQ---   70 (568)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHT---
T ss_pred             CccHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC---
Confidence            366777777776665       3334455667777778888888888888888877652 12345555555566554   


Q ss_pred             CCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHH
Q 007684          156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFG  234 (593)
Q Consensus       156 ~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~  234 (593)
                                   |++++|.+.|++..+.. +-+...+..+..++...|++++|.+.+++..+..  |+ ...+..+...
T Consensus        71 -------------g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~  134 (568)
T 2vsy_A           71 -------------QRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNW  134 (568)
T ss_dssp             -------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             -------------CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence                         57888888888777654 4456777788888888888888888888877632  43 4567777777


Q ss_pred             HHhc---CChhHHHHHHHHHHhCC
Q 007684          235 FCKL---GNTDKAYEVDAHMGESG  255 (593)
Q Consensus       235 ~~~~---g~~~~A~~l~~~m~~~g  255 (593)
                      +...   |+.++|.+.+++..+.+
T Consensus       135 ~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          135 RRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHhhccccHHHHHHHHHHHHhcC
Confidence            7777   88888888888776543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.13  E-value=2.3e-05  Score=77.27  Aligned_cols=166  Identities=8%  Similarity=-0.090  Sum_probs=125.8

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      |+.....|...|++++|...|++..+.    |-.++ ..+|+.+-.+|...                |++++|++.|++.
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~----------------g~~~~A~~~~~~A  103 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG----------------GNSVNAVDSLENA  103 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHH
Confidence            777788899999999999999987643    32222 35666666677775                6999999999987


Q ss_pred             HhC----CCCC-CHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCC----CCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684          182 ITD----KVDP-NEATFTSVARLAVAK-EDPEMAFDLVKQMKSFG----IPPK-LRSYGPALFGFCKLGNTDKAYEVDAH  250 (593)
Q Consensus       182 ~~~----g~~p-~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g----~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~  250 (593)
                      .+.    |-.. -..+++.+...|... |++++|...+++..+..    -.+. ..+|+.+...|.+.|++++|.+.|++
T Consensus       104 l~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  183 (292)
T 1qqe_A          104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            642    2111 135788999999996 99999999999987521    1011 34688899999999999999999999


Q ss_pred             HHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          251 MGESGVVPEE------PELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       251 m~~~g~~p~~------~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ..+.......      ..|..+..++...|+.++|...+++..+
T Consensus       184 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9875433222      1577788889999999999999998865

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.13  E-value=0.00015  Score=83.85  Aligned_cols=144  Identities=10%  Similarity=-0.013  Sum_probs=73.2

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      ++.+|..+-.++.+.|++++|.+.|.+.      -|...|.-+...|.+.                |++++|.+.|...+
T Consensus      1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~l----------------GkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A         1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS----------------GNWEELVKYLQMAR 1161 (1630)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHc----------------CCHHHHHHHHHHHH
Confidence            3455556666666666666666666442      2445555555555554                36666666665544


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 007684          183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE  262 (593)
Q Consensus       183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  262 (593)
                      +..  ++....+.++-+|++.+++++.....    +   .|+...|..+...|-..|++++|..+|...         ..
T Consensus      1162 k~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~n 1223 (1630)
T 1xi4_A         1162 KKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 1223 (1630)
T ss_pred             hhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hH
Confidence            432  22222333555555555555322221    1   133334444555555555555555555553         24


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          263 LSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       263 ~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      |..+...|++.|++++|.+.+++.
T Consensus      1224 y~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1224 FGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHh
Confidence            555555555555555555555544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.12  E-value=0.00012  Score=70.53  Aligned_cols=169  Identities=11%  Similarity=0.010  Sum_probs=127.1

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHH
Q 007684          101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS----QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE  176 (593)
Q Consensus       101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~  176 (593)
                      ..+...+-.+...+.+.|++++|...|+++.+..  |+    ...+..+-.+|...                |++++|.+
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~----------------~~~~~A~~   73 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQN----------------KEYLLAAS   73 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHT----------------TCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHh----------------CcHHHHHH
Confidence            3445567777888899999999999999998763  33    34444444466665                69999999


Q ss_pred             HHHHHHhCCC-CC-CHHHHHHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCc-ccH-----------------
Q 007684          177 IFQQMITDKV-DP-NEATFTSVARLAVA--------KEDPEMAFDLVKQMKSFGIPPKL-RSY-----------------  228 (593)
Q Consensus       177 l~~~M~~~g~-~p-~~~ty~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~ty-----------------  228 (593)
                      .|++...... .| ...++..+..++..        .|++++|...|++..+..  |+. ...                 
T Consensus        74 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~  151 (261)
T 3qky_A           74 EYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQ  151 (261)
T ss_dssp             HHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHH
Confidence            9999987532 22 24567788888888        999999999999998742  543 333                 


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 007684          229 GPALFGFCKLGNTDKAYEVDAHMGESGVV-P-EEPELSALLKLSVDA----------KKVDKVYEILHRLRTL  289 (593)
Q Consensus       229 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~Ll~~~~~~----------g~~~~a~~~l~~m~~~  289 (593)
                      -.+...|.+.|++++|...|++..+..-. + ....+..+..+|...          |++++|...++++.+.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            34578889999999999999998864311 1 234577788888766          8899999999999773

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.12  E-value=3.1e-06  Score=83.94  Aligned_cols=205  Identities=10%  Similarity=-0.049  Sum_probs=145.7

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC----HHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGI-TLS----QHH  141 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t  141 (593)
                      ..+...|...|++++|...+.+.+..... ..........+..+...+...|++++|...+++..+..- .++    ..+
T Consensus        47 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  125 (338)
T 3ro2_A           47 SQLGNAYFYLHDYAKALEYHHHDLTLART-IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA  125 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence            67788899999999999999776622211 110111133488889999999999999999998764310 112    235


Q ss_pred             HHHHHHHHHccCCCCCCCCCCCccccccc--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHH
Q 007684          142 YNVLLYVCSCKCGSESSENGDRENDSNLG--------------------LKRGFEIFQQMITD----KVDP-NEATFTSV  196 (593)
Q Consensus       142 y~~ll~~~~~~~~~~~~~~~~~~~~~~g~--------------------~~~a~~l~~~M~~~----g~~p-~~~ty~~l  196 (593)
                      +..+-..+...                |+                    +++|.+.+++....    +-.+ ...++..+
T Consensus       126 ~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  189 (338)
T 3ro2_A          126 LYNLGNVYHAK----------------GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNL  189 (338)
T ss_dssp             HHHHHHHHHHH----------------HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc----------------CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            55555566554                46                    88999888876532    2111 23478888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC----CCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHH
Q 007684          197 ARLAVAKEDPEMAFDLVKQMKSF----GIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVPE-EPELSAL  266 (593)
Q Consensus       197 i~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~L  266 (593)
                      ...+...|++++|.+.+++..+.    +-.+ ...++..+...|...|+.++|.+.+++....    +-.+. ...+..+
T Consensus       190 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  269 (338)
T 3ro2_A          190 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL  269 (338)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence            99999999999999999998642    1111 1247888999999999999999999987642    11111 4567888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 007684          267 LKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       267 l~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ...+...|++++|...+++..+
T Consensus       270 a~~~~~~g~~~~A~~~~~~a~~  291 (338)
T 3ro2_A          270 GNTYTLLQDYEKAIDYHLKHLA  291 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHH
Confidence            8999999999999999998865

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.10  E-value=2.6e-06  Score=87.39  Aligned_cols=205  Identities=9%  Similarity=-0.011  Sum_probs=147.2

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCC--------------------HHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD--------------------VFEALRL  126 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------------------~~~A~~l  126 (593)
                      ..+...|...|++++|...+.+.+..... ..........+..+...|...|+                    +++|+.+
T Consensus        91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~  169 (406)
T 3sf4_A           91 GNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF  169 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            77778899999999999999776622211 11000112358888889999999                    9999999


Q ss_pred             HHHHHHC----CCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC-CCC----HHHHHHH
Q 007684          127 YDDARSN----GITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV-DPN----EATFTSV  196 (593)
Q Consensus       127 ~~~m~~~----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~-~p~----~~ty~~l  196 (593)
                      +++..+.    +-.|. ..++..+-..|...                |++++|.+.|++..+... .++    ..++..+
T Consensus       170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  233 (406)
T 3sf4_A          170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLL----------------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL  233 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            9886543    21222 23444444566654                699999999998764210 122    2378899


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHH
Q 007684          197 ARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVPE-EPELSAL  266 (593)
Q Consensus       197 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~L  266 (593)
                      ...+...|++++|...+++..+.    +-.+. ..++..+...|...|++++|.+.+++..+.    +-.+. ...+..+
T Consensus       234 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  313 (406)
T 3sf4_A          234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL  313 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            99999999999999999998642    11111 457888999999999999999999987642    21111 4467888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 007684          267 LKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       267 l~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ..+|...|++++|.+.+++..+
T Consensus       314 a~~~~~~g~~~~A~~~~~~al~  335 (406)
T 3sf4_A          314 GNAYTALGNHDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            8999999999999999998765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.08  E-value=1.2e-05  Score=79.12  Aligned_cols=165  Identities=8%  Similarity=-0.003  Sum_probs=127.0

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684          102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ  180 (593)
Q Consensus       102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~  180 (593)
                      .+...+..+-..+.+.|++++|..+|+++.+.  .| +...+..+-.++...                |++++|.+.|++
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~----------------g~~~~A~~~l~~  176 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIAL----------------NRSEDAEAVLXT  176 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHT----------------TCHHHHHHHHTT
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHC----------------CCHHHHHHHHHh
Confidence            34455777888899999999999999998876  44 455566666677775                699999999998


Q ss_pred             HHhCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-
Q 007684          181 MITDKVDPNEATFTS-VARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV-  257 (593)
Q Consensus       181 M~~~g~~p~~~ty~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-  257 (593)
                      .....  |+...... ....+...++.++|...+++.....  |+ ...+..+...|...|+.++|.+.|.++.+..-. 
T Consensus       177 ~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          177 IPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             SCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             Cchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            87654  45443333 3334667888889999999887743  55 677888999999999999999999999865422 


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          258 PEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       258 p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .+...+..|...+...|+.++|...+++...
T Consensus       253 ~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          253 ADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            1256789999999999999999988887654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.08  E-value=0.00021  Score=70.23  Aligned_cols=166  Identities=5%  Similarity=-0.054  Sum_probs=123.2

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHH---HHHH-HHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNG-ITLSQH---HYNV-LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~---ty~~-ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      +...+..+...|++++|..++++..+.. ..|+..   .|.. +...+...                |+.++|++.|++.
T Consensus        78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~Ai~~~~~a  141 (293)
T 3u3w_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK----------------VDYEYCILELKKL  141 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTS----------------SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcc----------------cCHHHHHHHHHHH
Confidence            4455788999999999999999988752 222221   1222 33344333                6899999999999


Q ss_pred             HhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh----C-CCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684          182 ITDKVD-PN----EATFTSVARLAVAKEDPEMAFDLVKQMKS----F-GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAH  250 (593)
Q Consensus       182 ~~~g~~-p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~-g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~  250 (593)
                      ...... ++    ..+|+.+...|...|++++|...+++..+    . +..+. ..+|..+...|.+.|+.++|.+.+++
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~  221 (293)
T 3u3w_A          142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK  221 (293)
T ss_dssp             HHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            874322 23    33799999999999999999999999873    2 22222 24788899999999999999999998


Q ss_pred             HHh----CCCCCC-HHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 007684          251 MGE----SGVVPE-EPELSALLKLSVDAKK-VDKVYEILHRLRT  288 (593)
Q Consensus       251 m~~----~g~~p~-~~t~~~Ll~~~~~~g~-~~~a~~~l~~m~~  288 (593)
                      ..+    .+..+. ...|..+..+|.+.|+ .++|.+.+++..+
T Consensus       222 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            763    333333 5668889999999994 6999999988765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.07  E-value=7.3e-05  Score=81.17  Aligned_cols=152  Identities=11%  Similarity=-0.047  Sum_probs=111.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007684          117 RGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS  195 (593)
Q Consensus       117 ~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~  195 (593)
                      .|++++|++.|+++.+.  .| +...|..+-..+...                |++++|.+.|++..+.. +-+..++..
T Consensus         2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~~~-p~~~~~~~~   62 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGM----------------GDTTAGEMAVQRGLALH-PGHPEAVAR   62 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHTTS-TTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            47889999999998766  34 456666666666665                59999999999998876 557889999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 007684          196 VARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA-  273 (593)
Q Consensus       196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~-  273 (593)
                      +..+|...|++++|.+.+++..+..  |+ ...|..+...|.+.|+.++|.+.+++..+..- -+...+..+..++... 
T Consensus        63 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~  139 (568)
T 2vsy_A           63 LGRVRWTQQRHAEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLC  139 (568)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhh
Confidence            9999999999999999999998743  54 57888899999999999999999999886532 3466788899999999 


Q ss_pred             --CCHHHHHHHHHHHHHcc
Q 007684          274 --KKVDKVYEILHRLRTLV  290 (593)
Q Consensus       274 --g~~~~a~~~l~~m~~~~  290 (593)
                        |+.++|.+.+++..+..
T Consensus       140 ~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          140 DWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             CCTTHHHHHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHHHhcC
Confidence              99999999999987744

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.07  E-value=0.0004  Score=74.56  Aligned_cols=168  Identities=11%  Similarity=0.096  Sum_probs=126.6

Q ss_pred             CCCHHHHHHHHHHHHc-------CCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCccc
Q 007684          101 ESPEGVLRHKLDMCSK-------RGDVF-------EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND  166 (593)
Q Consensus       101 ~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~  166 (593)
                      +.....|......+.+       .|+++       +|..+|++..+.-.+-+...|..+...+...              
T Consensus       269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~--------------  334 (530)
T 2ooe_A          269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR--------------  334 (530)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT--------------
T ss_pred             CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc--------------
Confidence            3445566666666664       79987       8999999887632233577777777777775              


Q ss_pred             ccccHHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHH-HHHHHhcCChh
Q 007684          167 SNLGLKRGFEIFQQMITDKVDPN-E-ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPA-LFGFCKLGNTD  242 (593)
Q Consensus       167 ~~g~~~~a~~l~~~M~~~g~~p~-~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~l-i~~~~~~g~~~  242 (593)
                        |++++|.++|+++.+.  .|+ . ..|...+..+.+.|++++|.++|++..+.  .|+ ...|-.. ...+...|+.+
T Consensus       335 --g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~  408 (530)
T 2ooe_A          335 --MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS  408 (530)
T ss_dssp             --TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHH
T ss_pred             --CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChh
Confidence              5999999999999985  443 3 58999999999999999999999999874  233 2222221 12234689999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       243 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      +|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++..+.
T Consensus       409 ~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          409 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            9999999887643 124677999999999999999999999998774

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.07  E-value=6.1e-06  Score=84.70  Aligned_cols=202  Identities=6%  Similarity=-0.058  Sum_probs=144.7

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhc-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKAR-RESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QH  140 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~  140 (593)
                      ..+-..|...|++++|...+.+.+.. .+.... .......++.+-..|...|++++|+..|++..+.    +-.+. ..
T Consensus       147 ~~lg~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  225 (383)
T 3ulq_A          147 FKMSESYYYMKQTYFSMDYARQAYEI-YKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR  225 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-HHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH-HHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            77778899999999999998766622 221100 0011234888999999999999999999987644    21111 12


Q ss_pred             HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684          141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD----KV-DPNEATFTSVARLAVAKEDPEMAFDLVKQ  215 (593)
Q Consensus       141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~----g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~  215 (593)
                      +++.+-.+|...                |++++|.+.|++..+.    +- +....++..+...+.+.|++++|...+++
T Consensus       226 ~~~~lg~~y~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  289 (383)
T 3ulq_A          226 TLYNIGLCKNSQ----------------SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK  289 (383)
T ss_dssp             HHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            455544566665                6999999999988762    32 33456899999999999999999999998


Q ss_pred             HHhC----CCCCCcccHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684          216 MKSF----GIPPKLRSYGPALFGFCKLGN---TDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       216 m~~~----g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~  287 (593)
                      ..+.    +-......++.+-..|...|+   .++|..++++.   +..|+. ..+..|...|...|+.++|.+.+++..
T Consensus       290 al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          290 GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8642    111112336677788888898   77777777765   333443 347778899999999999999999886


Q ss_pred             H
Q 007684          288 T  288 (593)
Q Consensus       288 ~  288 (593)
                      +
T Consensus       367 ~  367 (383)
T 3ulq_A          367 Q  367 (383)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.06  E-value=0.00017  Score=66.66  Aligned_cols=127  Identities=13%  Similarity=-0.009  Sum_probs=83.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      +..+...+...|++++|+..|++.    +.|+...|..+-..+...                |++++|.+.|++..+.. 
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~~~-   67 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTIL----------------KNMTEAEKAFTRSINRD-   67 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-
Confidence            455566677777888887777765    355666666666666654                47777777777776654 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--------------CCC-cccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI--------------PPK-LRSYGPALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m  251 (593)
                      +.+..++..+..++...|++++|.+.+++..+..-              .|+ ...+..+..+|.+.|+.++|.+.|++.
T Consensus        68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A           68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            44666777777777777777777777777765321              011 145566666677777777777777766


Q ss_pred             HhC
Q 007684          252 GES  254 (593)
Q Consensus       252 ~~~  254 (593)
                      .+.
T Consensus       148 l~~  150 (213)
T 1hh8_A          148 TSM  150 (213)
T ss_dssp             HTT
T ss_pred             HHc
Confidence            643

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.06  E-value=0.00034  Score=65.80  Aligned_cols=166  Identities=10%  Similarity=-0.005  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGIT-LS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      ...+-.+...+.+.|++++|+..|+++.+..-. |. ...+..+-.++...                |++++|++.|++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~----------------~~~~~A~~~~~~~   67 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKN----------------ADLPLAQAAIDRF   67 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhc----------------CCHHHHHHHHHHH
Confidence            445556667788899999999999999876211 11 23444455566665                5999999999999


Q ss_pred             HhCCCC-CCH-HHHHHHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCcc-cH------------
Q 007684          182 ITDKVD-PNE-ATFTSVARLAVA------------------KEDPEMAFDLVKQMKSFGIPPKLR-SY------------  228 (593)
Q Consensus       182 ~~~g~~-p~~-~ty~~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-ty------------  228 (593)
                      .+.... +.. .++-.+..++..                  .|+.++|...|+++.+.  .|+.. .+            
T Consensus        68 l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~  145 (225)
T 2yhc_A           68 IRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDR  145 (225)
T ss_dssp             HHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHH
Confidence            875422 221 234444444443                  57899999999999873  36543 22            


Q ss_pred             -----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          229 -----GPALFGFCKLGNTDKAYEVDAHMGESGVVPEE----PELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       229 -----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                           -.+...|.+.|++++|...|+++.+..  |+.    ..+..+..+|.+.|+.++|.+.++.+...
T Consensus       146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~  213 (225)
T 2yhc_A          146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN  213 (225)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence                 234567889999999999999998643  332    45788899999999999999999988774

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.06  E-value=0.00012  Score=74.44  Aligned_cols=202  Identities=9%  Similarity=-0.004  Sum_probs=139.1

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC--C
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE---GVLRHKLDMCSKRGDVFEALRLYDDARSN----GIT--L  137 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p  137 (593)
                      +.+...|...|++++|...+.+.+.....    ...+.   ..++.+...+...|++++|...+++..+.    +..  |
T Consensus        57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  132 (373)
T 1hz4_A           57 SVLGEVLHCKGELTRSLALMQQTEQMARQ----HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP  132 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence            55566788899999999998666521111    11111   22677788899999999999999987643    322  3


Q ss_pred             CH-HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCChHHHHHH
Q 007684          138 SQ-HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD----PNEATFTSVARLAVAKEDPEMAFDL  212 (593)
Q Consensus       138 ~~-~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~----p~~~ty~~li~~~~~~g~~~~A~~l  212 (593)
                      .. ..+..+-..+...                |++++|.+.+++.......    ....++..+...+...|++++|...
T Consensus       133 ~~~~~~~~la~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  196 (373)
T 1hz4_A          133 MHEFLVRIRAQLLWAW----------------ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQ  196 (373)
T ss_dssp             HHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh----------------cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            22 3333344455554                6999999999987653211    1245788899999999999999999


Q ss_pred             HHHHHhCCCCCCc-ccHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007684          213 VKQMKSFGIPPKL-RSYG-----PALFGFCKLGNTDKAYEVDAHMGESGVVP---EEPELSALLKLSVDAKKVDKVYEIL  283 (593)
Q Consensus       213 ~~~m~~~g~~p~~-~ty~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~Ll~~~~~~g~~~~a~~~l  283 (593)
                      +++.....-.++. ..+.     ..+..+...|+.++|...+++.......+   ....+..+..++...|+.++|...+
T Consensus       197 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l  276 (373)
T 1hz4_A          197 LNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL  276 (373)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9998753211221 1122     22344779999999999999887533211   1335677888999999999999999


Q ss_pred             HHHHH
Q 007684          284 HRLRT  288 (593)
Q Consensus       284 ~~m~~  288 (593)
                      ++..+
T Consensus       277 ~~a~~  281 (373)
T 1hz4_A          277 EELNE  281 (373)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.01  E-value=0.00062  Score=63.40  Aligned_cols=170  Identities=11%  Similarity=-0.035  Sum_probs=132.2

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684          102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      .+...+..|-..|...+++++|+.+|++..+.|   +...+..|=..|...+             ...+.++|++.|++.
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g-------------~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNP-------------QQADYPQARQLAEKA   79 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSST-------------TSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC-------------CCCCHHHHHHHHHHH
Confidence            456677888888989999999999999999886   4455555545555421             012799999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHh----cCChhHHHHHHHHHH
Q 007684          182 ITDKVDPNEATFTSVARLAVA----KEDPEMAFDLVKQMKSFGIP-PKLRSYGPALFGFCK----LGNTDKAYEVDAHMG  252 (593)
Q Consensus       182 ~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~  252 (593)
                      .+.|   +..++..|...|..    .++.++|++.|++..+.|.. -....+..|-..|..    .++.++|.+.|++..
T Consensus        80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            8766   67788888888887    89999999999999886531 015778888888988    889999999999998


Q ss_pred             hCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHccCC
Q 007684          253 ESGVVPEEPELSALLKLSVDA-K-----KVDKVYEILHRLRTLVRQ  292 (593)
Q Consensus       253 ~~g~~p~~~t~~~Ll~~~~~~-g-----~~~~a~~~l~~m~~~~~~  292 (593)
                      +.+  .+...+..|-..|... |     +.++|...|++..+.|..
T Consensus       157 ~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          157 SLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            762  2444677777777653 3     899999999999886643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.00  E-value=6.2e-05  Score=72.56  Aligned_cols=170  Identities=11%  Similarity=-0.047  Sum_probs=120.8

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCC-HHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP---EGVLRHKLDMCSKRGDVFEALRLYDDARSNGI-TLS-QHH  141 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t  141 (593)
                      -.+...+.+.|++++|...|.+.+       ...+.+   ...+..+...|.+.|++++|+..|++..+..- .|. ...
T Consensus        19 ~~~a~~~~~~g~~~~A~~~~~~~l-------~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           19 FERAMEFYNQGKYDRAIEYFKAVF-------TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHG-------GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHH-------HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            555667889999999999997777       333333   56688889999999999999999999987621 122 233


Q ss_pred             HHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcC
Q 007684          142 YNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF-----------------TSVARLAVAKE  204 (593)
Q Consensus       142 y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty-----------------~~li~~~~~~g  204 (593)
                      +..+-.++...+        .+.....|++++|.+.|++..... +-+....                 ..+...|.+.|
T Consensus        92 ~~~lg~~~~~~~--------~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g  162 (261)
T 3qky_A           92 EYERAMCYYKLS--------PPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRE  162 (261)
T ss_dssp             HHHHHHHHHHHC--------CCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc--------ccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            333333444310        001111379999999999998764 2222233                 45678899999


Q ss_pred             ChHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhc----------CChhHHHHHHHHHHhC
Q 007684          205 DPEMAFDLVKQMKSFGIPPK----LRSYGPALFGFCKL----------GNTDKAYEVDAHMGES  254 (593)
Q Consensus       205 ~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~----------g~~~~A~~l~~~m~~~  254 (593)
                      ++++|...|++..+..  |+    ...+..+..+|.+.          |++++|.+.|++..+.
T Consensus       163 ~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          163 LYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             CHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            9999999999998742  44    24566777888766          8899999999998864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.97  E-value=4.5e-05  Score=68.81  Aligned_cols=113  Identities=9%  Similarity=0.051  Sum_probs=47.8

Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH--HHhcCChhHHHHH
Q 007684          170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG--FCKLGNTDKAYEV  247 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~--~~~~g~~~~A~~l  247 (593)
                      ++++|...|++..+.. +-+...+..+...+...|++++|...+++....  .|+.. +..+...  +...+...+|.+.
T Consensus        21 ~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~~~~~~~~~a~~~   96 (176)
T 2r5s_A           21 EHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLELHQQAAESPELKR   96 (176)
T ss_dssp             CHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHHHHHHTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHHHhhcccchHHHH
Confidence            4455555554443322 223444445555555555555555555444331  12111 1111110  1111222234455


Q ss_pred             HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          248 DAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       248 ~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +++..+..  | +...+..+..++...|+.++|...|+++.+
T Consensus        97 ~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  136 (176)
T 2r5s_A           97 LEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILK  136 (176)
T ss_dssp             HHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            55444321  3 234455555555555555555555555544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.94  E-value=0.00013  Score=71.66  Aligned_cols=140  Identities=8%  Similarity=-0.021  Sum_probs=107.3

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc-HHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS-YGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-y~~li~~~~~~g~~~~A~~l  247 (593)
                      |++++|.+.|++..+.. +-+...+..+...+...|++++|..++++....  .|+... .......+.+.++.++|.+.
T Consensus       131 g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~  207 (287)
T 3qou_A          131 SNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQ  207 (287)
T ss_dssp             TCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHH
Confidence            69999999999998776 557788999999999999999999999988663  355332 22233346678889999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHhcchhhh
Q 007684          248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV-SESTFKIIEDWFDSVDAAE  312 (593)
Q Consensus       248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~~~t~~~l~~~~~~~~~~~  312 (593)
                      +++..... +.+...+..+..++...|+.++|...|.++.+..... +...+..+...|...+..+
T Consensus       208 l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          208 LQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            99887644 2356678899999999999999999999998743322 2456677777776655433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.93  E-value=0.00025  Score=72.03  Aligned_cols=204  Identities=9%  Similarity=-0.026  Sum_probs=140.0

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCC-CCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--C--CH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRE-SPE--GVLRHKLDMCSKRGDVFEALRLYDDARSNGIT--L--SQ  139 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~  139 (593)
                      ..+...+...|++++|...+.+.+. ..+. .+.. .+.  ..+..+...+...|++++|..++++..+..-.  +  ..
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~-~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQ-LINE-QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH-HHHH-TTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH-HHHH-hccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            5667788999999999999977762 2221 1221 133  23777888899999999999999998754221  1  12


Q ss_pred             HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhcCChHHHHHHH
Q 007684          140 HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN--EATFT----SVARLAVAKEDPEMAFDLV  213 (593)
Q Consensus       140 ~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~--~~ty~----~li~~~~~~g~~~~A~~l~  213 (593)
                      .+|..+-..+...                |++++|.+.+++.....-.++  .....    ..+..+...|+.++|...+
T Consensus       175 ~~~~~la~~~~~~----------------g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  238 (373)
T 1hz4_A          175 QCLAMLIQCSLAR----------------GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL  238 (373)
T ss_dssp             HHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4455555556554                699999999998865321111  22121    2334577999999999999


Q ss_pred             HHHHhCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 007684          214 KQMKSFGIPPK---LRSYGPALFGFCKLGNTDKAYEVDAHMGE----SGVVPEEP-ELSALLKLSVDAKKVDKVYEILHR  285 (593)
Q Consensus       214 ~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~-t~~~Ll~~~~~~g~~~~a~~~l~~  285 (593)
                      ++.......+.   ...+..+...+...|+.++|.+.+++...    .|..++.. .+..+..++...|+.++|...+++
T Consensus       239 ~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  318 (373)
T 1hz4_A          239 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  318 (373)
T ss_dssp             HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            98865332111   12456778889999999999999998763    23322332 566677788899999999999988


Q ss_pred             HHH
Q 007684          286 LRT  288 (593)
Q Consensus       286 m~~  288 (593)
                      ..+
T Consensus       319 al~  321 (373)
T 1hz4_A          319 ALK  321 (373)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=97.93  E-value=3.4e-05  Score=79.00  Aligned_cols=201  Identities=6%  Similarity=-0.124  Sum_probs=141.5

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRE-SPEGVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QH  140 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~  140 (593)
                      ..+-..|...|++++|...+.+.+. ..++..... .....++.+-..|...|++++|++.|++..+.    |-.+. ..
T Consensus       145 ~~lg~~y~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  223 (378)
T 3q15_A          145 FKVAEAYYHMKQTHVSMYHILQALD-IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI  223 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH-HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHH-HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            6777789999999999998866652 111111100 11334888999999999999999999987653    21111 13


Q ss_pred             HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684          141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT-----DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ  215 (593)
Q Consensus       141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~-----~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~  215 (593)
                      +++.+-.+|...                |++++|.+.|++...     .. +....++..+...+.+.|++++|...+++
T Consensus       224 ~~~~lg~~y~~~----------------~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~  286 (378)
T 3q15_A          224 SLLNIANSYDRS----------------GDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEE  286 (378)
T ss_dssp             HHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC----------------CCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            344444466654                699999999998876     33 33467899999999999999999999999


Q ss_pred             HHhCCCC---CC-cccHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684          216 MKSFGIP---PK-LRSYGPALFGFCKLGN---TDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       216 m~~~g~~---p~-~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~  287 (593)
                      ..+..-.   |. ...++.+-..|...++   .++|...+++.   +..|+. ..+..+...|...|+.++|...+++..
T Consensus       287 al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          287 GLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8763211   21 2345555566667777   77777777763   333333 346778889999999999999999886


Q ss_pred             H
Q 007684          288 T  288 (593)
Q Consensus       288 ~  288 (593)
                      +
T Consensus       364 ~  364 (378)
T 3q15_A          364 K  364 (378)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.92  E-value=0.0006  Score=66.90  Aligned_cols=166  Identities=6%  Similarity=-0.078  Sum_probs=121.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      +...+..+...|++++|.+.+.+..+..-..+.     ..+..+-..+...                |++++|++.|++.
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~A~~~~~~a  141 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK----------------VDYEYCILELKKL  141 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS----------------SCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC----------------CCHHHHHHHHHHH
Confidence            566788899999999999999988776322111     1111222233443                6999999999998


Q ss_pred             HhCCC---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC-----cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684          182 ITDKV---DPN--EATFTSVARLAVAKEDPEMAFDLVKQMKSF-GIPPK-----LRSYGPALFGFCKLGNTDKAYEVDAH  250 (593)
Q Consensus       182 ~~~g~---~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~ty~~li~~~~~~g~~~~A~~l~~~  250 (593)
                      .....   .+.  ..+|+.+...|...|++++|...+++..+. ...|+     ..+|..+...|.+.|++++|.+.+++
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k  221 (293)
T 2qfc_A          142 LNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK  221 (293)
T ss_dssp             HTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence            75321   222  458999999999999999999999998631 11122     25888999999999999999999998


Q ss_pred             HHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 007684          251 MGES----GVVPE-EPELSALLKLSVDAKKVDKV-YEILHRLRT  288 (593)
Q Consensus       251 m~~~----g~~p~-~~t~~~Ll~~~~~~g~~~~a-~~~l~~m~~  288 (593)
                      ..+.    +.... ...|..+..+|.+.|+.++| ...+++...
T Consensus       222 al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          222 AIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            7642    22222 46688899999999999999 777777654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.89  E-value=0.00018  Score=79.93  Aligned_cols=151  Identities=9%  Similarity=-0.095  Sum_probs=124.8

Q ss_pred             HcCCCHHHHHHHHHHHH--------HCCCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684          115 SKRGDVFEALRLYDDAR--------SNGITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK  185 (593)
Q Consensus       115 ~~~g~~~~A~~l~~~m~--------~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g  185 (593)
                      ...|++++|++.|++..        +.  .|+ ...+..+-.++...                |++++|.+.|++..+..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~----------------g~~~~A~~~~~~al~~~  463 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDL----------------GDVAKATRKLDDLAERV  463 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhc----------------CCHHHHHHHHHHHhccC
Confidence            77899999999999988        33  343 44555555566665                59999999999998765


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684          186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS  264 (593)
Q Consensus       186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  264 (593)
                       +-+...|..+..++...|++++|.+.|++..+..  |+ ...|..+..+|.+.|++++ .+.|++..+.+- -+...|.
T Consensus       464 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~  538 (681)
T 2pzi_A          464 -GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAF  538 (681)
T ss_dssp             -CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHH
T ss_pred             -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHH
Confidence             5577899999999999999999999999998743  54 6788889999999999999 999999886442 2456789


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          265 ALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       265 ~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .+..++.+.|+.++|.+.|++..+
T Consensus       539 ~lg~~~~~~g~~~~A~~~~~~al~  562 (681)
T 2pzi_A          539 GLARARSAEGDRVGAVRTLDEVPP  562 (681)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhhcc
Confidence            999999999999999999988765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.87  E-value=7.8e-05  Score=65.46  Aligned_cols=133  Identities=15%  Similarity=0.077  Sum_probs=102.1

Q ss_pred             cccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 007684          166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKA  244 (593)
Q Consensus       166 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A  244 (593)
                      ...|++++|++.++...... +-+...+-.+...|.+.|++++|.+.|++..+.  .|+ ..+|..+...|.+.|++++|
T Consensus         8 ~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            8 RSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence            34589999999999876542 223345677899999999999999999999874  365 67899999999999999999


Q ss_pred             HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHccCCC-CHHHHHHHHHHH
Q 007684          245 YEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEI-LHRLRTLVRQV-SESTFKIIEDWF  305 (593)
Q Consensus       245 ~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~-l~~m~~~~~~~-~~~t~~~l~~~~  305 (593)
                      ...|++..+..  | +...|..+...|.+.|+.+++.+. +++..+  +.| ++..+......+
T Consensus        85 ~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A           85 VECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLL  144 (150)
T ss_dssp             HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHH
Confidence            99999988643  5 456788999999999998776654 577765  334 344555444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.87  E-value=0.00037  Score=64.38  Aligned_cols=117  Identities=10%  Similarity=-0.043  Sum_probs=99.2

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|.+.|++..    .|+..++..+...+...|++++|.+.+++..+.. +.+...|..+..+|.+.|+.++|.+.|
T Consensus        20 ~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~   94 (213)
T 1hh8_A           20 KDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDL   94 (213)
T ss_dssp             TCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHH
Confidence            69999999998773    6788999999999999999999999999998753 134578888999999999999999999


Q ss_pred             HHHHhCC--------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 007684          249 AHMGESG--------------VVPE-EPELSALLKLSVDAKKVDKVYEILHRLRTLV  290 (593)
Q Consensus       249 ~~m~~~g--------------~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~  290 (593)
                      ++..+..              ..|+ ...+..+..+|...|+.++|.+.+++..+..
T Consensus        95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            9998643              1122 2568889999999999999999999998743

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.87  E-value=8.9e-05  Score=67.85  Aligned_cols=157  Identities=11%  Similarity=-0.030  Sum_probs=110.3

Q ss_pred             HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh----CCCCC-C
Q 007684          115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT----DKVDP-N  189 (593)
Q Consensus       115 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~----~g~~p-~  189 (593)
                      ...|++++|.++++.+... .......++.+-..+...                |++++|.+.|++...    .+..+ .
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~   65 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFM----------------DRFDEARASFQALQQQAQKSGDHTAE   65 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHh----------------CcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            4678999999966555432 112345555555566665                699999999998765    22222 3


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPP--KLRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVPE  259 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~  259 (593)
                      ..++..+...+...|++++|.+.+++..+.    +-.|  ....+..+...+...|++++|.+.+++....    +....
T Consensus        66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  145 (203)
T 3gw4_A           66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA  145 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence            457888899999999999999999987642    2112  1346788889999999999999999987632    21111


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          260 -EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       260 -~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                       ...+..+..++...|++++|.+.+++..+
T Consensus       146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          146 IACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence             23367788889999999999999988866

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.83  E-value=0.00052  Score=56.62  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=37.3

Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684          170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA  249 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~  249 (593)
                      ++++|.++|+++.... +.+..++..+...+...|++++|..+++++.+..- .+..++..+...|...|++++|.+.++
T Consensus        24 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~  101 (125)
T 1na0_A           24 DYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQ  101 (125)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            4555555555544432 23344444455555555555555555555443211 123344444444445555555555554


Q ss_pred             HHH
Q 007684          250 HMG  252 (593)
Q Consensus       250 ~m~  252 (593)
                      ++.
T Consensus       102 ~~~  104 (125)
T 1na0_A          102 KAL  104 (125)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.81  E-value=7.2e-05  Score=69.61  Aligned_cols=166  Identities=10%  Similarity=-0.029  Sum_probs=115.8

Q ss_pred             HHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHH----------------HHHHHHcCCCHHHHHHHHHHHHHCC
Q 007684           71 LAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRH----------------KLDMCSKRGDVFEALRLYDDARSNG  134 (593)
Q Consensus        71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g  134 (593)
                      ..+...|++++|...|.+.+       ...+.....+..                +-..|.+.|++++|+..|++..+. 
T Consensus        12 ~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-   83 (208)
T 3urz_A           12 SAAIEAGQNGQAVSYFRQTI-------ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-   83 (208)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH-------HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHCCCHHHHHHHHHHHH-------HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence            35678899999999996666       212222333555                888999999999999999999887 


Q ss_pred             CCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh--HHHHH
Q 007684          135 ITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP--EMAFD  211 (593)
Q Consensus       135 ~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~--~~A~~  211 (593)
                       .| +...+..+-.++...                |++++|.+.|++..+.. +-+..++..+...|...|+.  +.+..
T Consensus        84 -~p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~  145 (208)
T 3urz_A           84 -APNNVDCLEACAEMQVCR----------------GQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLET  145 (208)
T ss_dssp             -CTTCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHH
Confidence             34 456666666677765                69999999999998876 55778899998888766543  44555


Q ss_pred             HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684          212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL  266 (593)
Q Consensus       212 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L  266 (593)
                      .++....  ..|....+.....++...|+.++|.+.|++..+  +.|+......|
T Consensus       146 ~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l  196 (208)
T 3urz_A          146 DYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL  196 (208)
T ss_dssp             HHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred             HHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence            5554432  222222333455667778999999999999884  45776544444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.81  E-value=4.9e-05  Score=84.52  Aligned_cols=178  Identities=8%  Similarity=-0.088  Sum_probs=132.5

Q ss_pred             hcCCCcccCCCCcccccchHHhh-hhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHc
Q 007684           74 SKKSTVNESSAPNTGTMSNKSKK-KARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSC  151 (593)
Q Consensus        74 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~  151 (593)
                      ...|++++|.+.+++.+...... ..........+..+...+.+.|++++|+..|+++.+.  .| +...|..+-.++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence            67888888888885544111110 1122334556888889999999999999999999876  33 45566655556666


Q ss_pred             cCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHH
Q 007684          152 KCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGP  230 (593)
Q Consensus       152 ~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~  230 (593)
                      .                |++++|.+.|++..+.. +-+...+..+..++.+.|++++ .+.|++..+..  |+ ...|..
T Consensus       480 ~----------------g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~  539 (681)
T 2pzi_A          480 T----------------GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFG  539 (681)
T ss_dssp             H----------------TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHH
T ss_pred             c----------------CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHH
Confidence            5                69999999999998766 4567889999999999999999 99999998743  54 568888


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC
Q 007684          231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKK  275 (593)
Q Consensus       231 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~  275 (593)
                      +..+|.+.|+.++|.+.|++..+  +.|+. ..+..+..++...|.
T Consensus       540 lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          540 LARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred             HHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence            99999999999999999998864  34664 446777777766554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.81  E-value=0.00059  Score=59.86  Aligned_cols=94  Identities=12%  Similarity=-0.018  Sum_probs=41.9

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      +..+...+...|++++|...|++..+.. +.+...+..+-..+...                |++++|.+.|++..... 
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~----------------~~~~~A~~~~~~a~~~~-   77 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRT----------------ECYGYALGDATRAIELD-   77 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-
Confidence            4444455555555555555555544431 11233333333333332                34555555555444432 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      +.+..++..+..++...|++++|.+.+++..+
T Consensus        78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~  109 (166)
T 1a17_A           78 KKYIKGYYRRAASNMALGKFRAALRDYETVVK  109 (166)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            22334444444444444444444444444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=97.79  E-value=5.6e-05  Score=66.38  Aligned_cols=140  Identities=10%  Similarity=-0.003  Sum_probs=102.1

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCH
Q 007684          112 DMCSKRGDVFEALRLYDDARSNGITLSQH-HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE  190 (593)
Q Consensus       112 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~  190 (593)
                      .++...|++++|++.+......  .|+.. .+-.+-.+|...                |++++|.+.|++..+.. +-+.
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~----------------~~~~~A~~~~~~al~~~-p~~~   65 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEA----------------KEYDLAKKYICTYINVQ-ERDP   65 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-CCCH
Confidence            3445568899999999876654  33332 222333466665                69999999999998876 5578


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCC-HHHHHHHH
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV-DAHMGESGVVPE-EPELSALL  267 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l-~~~m~~~g~~p~-~~t~~~Ll  267 (593)
                      .+|..+..+|...|++++|...|++..+.  .|+ ...|..+...|.+.|+.++|.+. +++..+.  .|+ ...|....
T Consensus        66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~  141 (150)
T 4ga2_A           66 KAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKE  141 (150)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHH
Confidence            89999999999999999999999999874  465 57888899999999999876654 5766643  354 44466555


Q ss_pred             HHHHhcC
Q 007684          268 KLSVDAK  274 (593)
Q Consensus       268 ~~~~~~g  274 (593)
                      ..+...|
T Consensus       142 ~ll~~~G  148 (150)
T 4ga2_A          142 QLLDCEG  148 (150)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHhC
Confidence            5555555

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.79  E-value=0.00068  Score=55.85  Aligned_cols=113  Identities=12%  Similarity=0.069  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT  183 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~  183 (593)
                      ...+..+...+...|++++|.++|+++.+.. +.+..++..+...+...                |++++|..+|+++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~~~~   71 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ----------------GDYDEAIEYYQKALE   71 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHh----------------CCHHHHHHHHHHHHH
Confidence            4458888899999999999999999998763 23566777777777765                599999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHH
Q 007684          184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFC  236 (593)
Q Consensus       184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~  236 (593)
                      .. +.+..++..+...+...|++++|...++++.+..  |+ ...+..+...+.
T Consensus        72 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           72 LD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             hC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence            65 5578899999999999999999999999998743  44 334444444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.78  E-value=0.00014  Score=73.36  Aligned_cols=163  Identities=7%  Similarity=-0.041  Sum_probs=88.6

Q ss_pred             CCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCC
Q 007684           77 STVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE  156 (593)
Q Consensus        77 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~  156 (593)
                      +.+++|...+....       .........+..+-..|.+.|++++|+..|++..+..  |+...          .    
T Consensus       127 ~~~~~A~~~~~~a~-------~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~----------~----  183 (336)
T 1p5q_A          127 KSFEKAKESWEMNS-------EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS----------F----  183 (336)
T ss_dssp             EEEECCCCGGGCCH-------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC----------C----
T ss_pred             eecccccchhcCCH-------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hcccc----------C----
Confidence            34556666664443       1111123458889999999999999999999988763  22100          0    


Q ss_pred             CCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHH
Q 007684          157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGF  235 (593)
Q Consensus       157 ~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~  235 (593)
                                   ..+.+.++- .       ....+|..+..+|.+.|++++|...+++..+..  | +...|..+..+|
T Consensus       184 -------------~~~~~~~~~-~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~  240 (336)
T 1p5q_A          184 -------------SNEEAQKAQ-A-------LRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAH  240 (336)
T ss_dssp             -------------CSHHHHHHH-H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             -------------ChHHHHHHH-H-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence                         001111110 0       012455556666666666666666666665532  3 244555566666


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 007684          236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV-YEILHRL  286 (593)
Q Consensus       236 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a-~~~l~~m  286 (593)
                      ...|++++|.+.|++..+..- -+...+..+..++...|+.+++ ..++.+|
T Consensus       241 ~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          241 LAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666554321 1334455556666666666555 3344444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.77  E-value=0.00061  Score=59.73  Aligned_cols=117  Identities=10%  Similarity=0.017  Sum_probs=93.1

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|.+.|++..... +.+..++..+...+...|++++|.+.+++..+..- .+...|..+...|...|+.++|.+.+
T Consensus        27 ~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~  104 (166)
T 1a17_A           27 KDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAALRDY  104 (166)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            69999999999988765 45788899999999999999999999999987431 34567888899999999999999999


Q ss_pred             HHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          249 AHMGESGVVPEEPEL--SALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       249 ~~m~~~g~~p~~~t~--~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ++..+..- .+...+  -.+...+...|++++|.+.+.+...
T Consensus       105 ~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          105 ETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            99886432 233344  3344447778999999988887654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.77  E-value=0.00024  Score=63.72  Aligned_cols=123  Identities=10%  Similarity=0.047  Sum_probs=97.6

Q ss_pred             cccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCCh-
Q 007684          164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG-FCKLGNT-  241 (593)
Q Consensus       164 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~~~~g~~-  241 (593)
                      .+...|++++|.+.|++..+.. +.+...+..+...|...|++++|...+++..+..- .+...+..+... |...|+. 
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcc
Confidence            3556789999999999988765 56778999999999999999999999999987431 235567777777 7789998 


Q ss_pred             -hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          242 -DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       242 -~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                       ++|...+++..+..- -+...+..+..+|...|++++|...+++..+.
T Consensus        97 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           97 TAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence             999999999886542 24567888999999999999999999998773

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.74  E-value=0.00019  Score=65.90  Aligned_cols=60  Identities=12%  Similarity=-0.025  Sum_probs=34.0

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN  133 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  133 (593)
                      +..+......|.++++.+.+.......       ......+..+-..+.+.|++++|+..|++..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~   67 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEEK-------VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF   67 (198)
T ss_dssp             --------------CCCSGGGCCHHHH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cchhhhhhhhhhccccCchhhCCHHHH-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455666777888999999985444111       112334778888899999999999999998875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.73  E-value=0.0016  Score=68.35  Aligned_cols=161  Identities=12%  Similarity=0.005  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          106 VLRHKLDMCSKRG---DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       106 ~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      .+..|-..|.+.|   +.++|++.|++..+.|.. +...+..|-..|....            ...++.++|++.|++..
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~------------~~~~d~~~A~~~~~~aa  244 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDAT------------LGTPDEKTAQALLEKIA  244 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGG------------GSSCCHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCC------------CCCCCHHHHHHHHHHHc
Confidence            6677777788888   888899999888888743 4444344444554431            11247888999998877


Q ss_pred             hCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-----ChhHHHHHHHHHHhC
Q 007684          183 TDKVDPNEATFTSVARL-A--VAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG-----NTDKAYEVDAHMGES  254 (593)
Q Consensus       183 ~~g~~p~~~ty~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-----~~~~A~~l~~~m~~~  254 (593)
                       .|   +...+..|... +  ...++.++|.+.|++..+.|   +...+..+-..|. .|     +.++|.+.|++..  
T Consensus       245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--  314 (452)
T 3e4b_A          245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--  314 (452)
T ss_dssp             -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--
T ss_pred             -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--
Confidence             33   44566666665 3  45788999999999888766   4455666666666 55     8888998888876  


Q ss_pred             CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccC
Q 007684          255 GVVPEEPELSALLKLSVD----AKKVDKVYEILHRLRTLVR  291 (593)
Q Consensus       255 g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m~~~~~  291 (593)
                        .-+...+..|-..|..    ..+.++|...|++..+.|.
T Consensus       315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  353 (452)
T 3e4b_A          315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ  353 (452)
T ss_dssp             --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred             --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence              2355666777766665    3388889888888877553

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.72  E-value=0.00025  Score=70.25  Aligned_cols=163  Identities=9%  Similarity=0.002  Sum_probs=120.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      |+.....|...|++++|...|.+..+.    |-... ..+|+.+-..|...                |++++|++.|++.
T Consensus        39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~----------------g~~~~A~~~~~~A  102 (307)
T 2ifu_A           39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL----------------QRMPEAVQYIEKA  102 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----------------CCHHHHHHHHHHH
Confidence            888888899999999999999987644    21111 24566666677765                5888888888876


Q ss_pred             Hh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684          182 IT----DKVDPN--EATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAH  250 (593)
Q Consensus       182 ~~----~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~  250 (593)
                      .+    .| .+.  ..+++.+...|.. |++++|...+++..+.    +-.+. ..+++.+...|.+.|++++|.+.|++
T Consensus       103 l~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  180 (307)
T 2ifu_A          103 SVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK  180 (307)
T ss_dssp             HHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            53    22 222  3578888889988 9999999999988642    11111 35788899999999999999999999


Q ss_pred             HHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684          251 MGES----GVVPEE-PELSALLKLSVDAKKVDKVYEILHRLR  287 (593)
Q Consensus       251 m~~~----g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~  287 (593)
                      ....    +..+.. ..+..+..++...|+.++|...|++..
T Consensus       181 al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            8752    222222 256677778888899999999999886

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.72  E-value=0.00029  Score=63.19  Aligned_cols=98  Identities=11%  Similarity=0.003  Sum_probs=45.0

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCCCCCCCCCCcccccccH--HHHHHHHH
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV-CSCKCGSESSENGDRENDSNLGL--KRGFEIFQ  179 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~-~~~~~~~~~~~~~~~~~~~~g~~--~~a~~l~~  179 (593)
                      ....+..+...|...|++++|...|+++.+..- .+...+..+-.+ +...                |+.  ++|.+.|+
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~----------------~~~~~~~A~~~~~  105 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQA----------------SQHMTAQTRAMID  105 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHT----------------TTCCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhc----------------CCcchHHHHHHHH
Confidence            334455555555555555555555555444311 122333333223 3222                244  55555555


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       180 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      +..+.. +-+...+..+...+...|++++|...+++..+
T Consensus       106 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          106 KALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            554433 22344445555555555555555555555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.66  E-value=0.00031  Score=66.03  Aligned_cols=179  Identities=11%  Similarity=-0.033  Sum_probs=117.5

Q ss_pred             HHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCH-HHHH
Q 007684           68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP--EGVLRHKLDMCSKRGDVFEALRLYDDARSNGIT-LSQ-HHYN  143 (593)
Q Consensus        68 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~ty~  143 (593)
                      .+...+.+.|++++|...|.+++      +.....+  ...+..+..+|.+.|++++|+..|+++.+..-. +.. ..+-
T Consensus         9 ~~a~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            9 ATAQQKLQDGNWRQAITQLEALD------NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH------HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH------HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            34556888999999999997666      1111222  346778889999999999999999999876311 111 1222


Q ss_pred             HHHHHHHccCC--CCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcC
Q 007684          144 VLLYVCSCKCG--SESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF-----------------TSVARLAVAKE  204 (593)
Q Consensus       144 ~ll~~~~~~~~--~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty-----------------~~li~~~~~~g  204 (593)
                      .+-.++...+.  .+....+-......|+.++|...|+++.+.. +-+..+.                 -.+...+.+.|
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~  161 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG  161 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            22222222100  0000011112233579999999999998764 2222222                 24556788999


Q ss_pred             ChHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684          205 DPEMAFDLVKQMKSFGIPPKL----RSYGPALFGFCKLGNTDKAYEVDAHMGESG  255 (593)
Q Consensus       205 ~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g  255 (593)
                      ++++|...|+++.+..  |+.    ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus       162 ~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          162 AWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             CHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence            9999999999998732  543    467779999999999999999999988654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.64  E-value=0.00078  Score=59.19  Aligned_cols=82  Identities=15%  Similarity=-0.064  Sum_probs=45.2

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      |++++|.+.|++..... +-+...|..+..+|...|++++|...|++..+.  .|+ ...|..+..+|.+.|+.++|.+.
T Consensus        50 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~  126 (151)
T 3gyz_A           50 GRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKEC  126 (151)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            35555555555555443 334555555555566666666666666655542  233 34555555666666666666666


Q ss_pred             HHHHHh
Q 007684          248 DAHMGE  253 (593)
Q Consensus       248 ~~~m~~  253 (593)
                      |++..+
T Consensus       127 ~~~al~  132 (151)
T 3gyz_A          127 FELVIQ  132 (151)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=97.62  E-value=0.00067  Score=61.85  Aligned_cols=120  Identities=8%  Similarity=-0.057  Sum_probs=91.0

Q ss_pred             cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCChh
Q 007684          168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS----FGIPPK-LRSYGPALFGFCKLGNTD  242 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~  242 (593)
                      .|++++|.++++.+... ......++..+...+...|++++|...+++...    .+..|. ..++..+...|...|+++
T Consensus         5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            57999999966655442 123567889999999999999999999998865    223232 467888889999999999


Q ss_pred             HHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          243 KAYEVDAHMGES----GVVP--EEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       243 ~A~~l~~~m~~~----g~~p--~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +|.+.+++..+.    +-.|  ....+..+...+...|++++|...+++..+
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  135 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV  135 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            999999987642    2122  134478888899999999999999988765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.62  E-value=0.0015  Score=54.16  Aligned_cols=114  Identities=11%  Similarity=-0.014  Sum_probs=61.7

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      +..+...+...|++++|...|++..+.. +.+...+..+-..+...                |++++|.+.+++..... 
T Consensus        15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~----------------~~~~~A~~~~~~~~~~~-   76 (131)
T 2vyi_A           15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKL----------------GNYAGAVQDCERAICID-   76 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh----------------hchHHHHHHHHHHHhcC-
Confidence            5556666666666777766666665542 11344444444444443                36666666666655543 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCC
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGN  240 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~  240 (593)
                      +.+...+..+...+...|++++|.+.+++..+..  | +...+..+..++.+.|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           77 PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhc
Confidence            3345556666666666666666666666655432  3 23344444444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.62  E-value=0.0012  Score=55.21  Aligned_cols=116  Identities=14%  Similarity=0.098  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT  183 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~  183 (593)
                      ...+..+...+.+.|++++|...|++..+.. +.+...+..+-.++...                |++++|.+.|++..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~a~~   78 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKL----------------LEFQLALKDCEECIQ   78 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTT----------------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHh----------------ccHHHHHHHHHHHHH
Confidence            3447777888888888888888888877652 12445555555555554                578888888887776


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcC
Q 007684          184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLG  239 (593)
Q Consensus       184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g  239 (593)
                      .. +.+..++..+..++...|++++|.+.+++..+..  |+ ...+..+...+.+.|
T Consensus        79 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           79 LE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred             hC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence            54 4456777777777888888888888887776532  33 334444545544443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.61  E-value=0.0014  Score=64.20  Aligned_cols=162  Identities=12%  Similarity=0.013  Sum_probs=118.3

Q ss_pred             HHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH-H----HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CC----
Q 007684           69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE-G----VLRHKLDMCSKRGDVFEALRLYDDARSNGIT-LS----  138 (593)
Q Consensus        69 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----  138 (593)
                      .+..+...|++++|...+.+...      .....+. .    .+..+...+...|++++|+..|+++.+.... ++    
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~  154 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELK------KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHT------TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhc------cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence            46788899999999999966551      1111222 1    2445677777888999999999999874322 22    


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 007684          139 QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT----D-KVDPNE-ATFTSVARLAVAKEDPEMAFDL  212 (593)
Q Consensus       139 ~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~----~-g~~p~~-~ty~~li~~~~~~g~~~~A~~l  212 (593)
                      ..+|+.+-..|...                |++++|++.|++..+    . +..+.. .+|..+...|.+.|++++|...
T Consensus       155 ~~~~~~lg~~y~~~----------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~  218 (293)
T 3u3w_A          155 LYIENAIANIYAEN----------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ  218 (293)
T ss_dssp             HHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            23567766677775                699999999999874    1 222333 3889999999999999999999


Q ss_pred             HHHHHh----CCCCCC-cccHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 007684          213 VKQMKS----FGIPPK-LRSYGPALFGFCKLGN-TDKAYEVDAHMG  252 (593)
Q Consensus       213 ~~~m~~----~g~~p~-~~ty~~li~~~~~~g~-~~~A~~l~~~m~  252 (593)
                      +++..+    .+..+. ..+|..+..+|.+.|+ .++|.+.+++..
T Consensus       219 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            998764    232233 4678889999999995 699999888865

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=97.60  E-value=0.00013  Score=72.29  Aligned_cols=193  Identities=13%  Similarity=0.113  Sum_probs=129.4

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRES-PEGVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QH  140 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~  140 (593)
                      ......|...|++++|...|.+.+....+  .+... -...|+.+...|.+.|++++|+..|++..+.    |-... ..
T Consensus        40 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  117 (307)
T 2ifu_A           40 AKAAVAFKNAKQLEQAKDAYLQEAEAHAN--NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM  117 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            44456788899999999998766622221  11111 1234888999999999999999999987643    21111 23


Q ss_pred             HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684          141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD----KVDP-NEATFTSVARLAVAKEDPEMAFDLVKQ  215 (593)
Q Consensus       141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~  215 (593)
                      +++.+-.+|..                 |++++|++.|++....    |-.. ...+++.+...|...|++++|...|++
T Consensus       118 ~~~~lg~~~~~-----------------g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  180 (307)
T 2ifu_A          118 ALDRAGKLMEP-----------------LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK  180 (307)
T ss_dssp             HHHHHHHHHTT-----------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-----------------CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44444445544                 4899999999987642    2111 145788999999999999999999999


Q ss_pred             HHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---H---HHHHHHHHHHHhcCCHHHHHHH
Q 007684          216 MKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE---E---PELSALLKLSVDAKKVDKVYEI  282 (593)
Q Consensus       216 m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~---~t~~~Ll~~~~~~g~~~~a~~~  282 (593)
                      ..+.    +..+. ...+..+...+...|+.++|...|++.. .  .|+   .   .....++.++ ..|+.+.+.++
T Consensus       181 al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          181 EKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            8752    22121 2356667778888899999999999987 3  232   1   2345556655 56777666553

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.57  E-value=0.0014  Score=54.50  Aligned_cols=102  Identities=14%  Similarity=0.088  Sum_probs=56.6

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      |++++|.+.|++..... +.+...+..+...+...|++++|.+.+++.....  |+ ...+..+...|.+.|+.++|.+.
T Consensus        26 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~  102 (131)
T 2vyi_A           26 ENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLALSSLNKHVEAVAY  102 (131)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            36666666666665543 3345566666666666666666666666665532  32 34555556666666666666666


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684          248 DAHMGESGVVPEEPELSALLKLSVDAK  274 (593)
Q Consensus       248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g  274 (593)
                      +++..+..- .+...+..+..++...|
T Consensus       103 ~~~~~~~~p-~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A          103 YKKALELDP-DNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence            666554321 13334444444544444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.51  E-value=0.00057  Score=57.86  Aligned_cols=94  Identities=11%  Similarity=-0.077  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684          192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS  270 (593)
Q Consensus       192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~  270 (593)
                      .+......|.+.|++++|.+.|++..+..  |+ ...|..+..+|.+.|++++|.+.|++..+..- .+...|..+..++
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~   91 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence            34445555555666666666665555422  32 44555555555566666666666555554321 1334455555556


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 007684          271 VDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       271 ~~~g~~~~a~~~l~~m~~  288 (593)
                      ...|++++|.+.|++..+
T Consensus        92 ~~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            666666666666655544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.51  E-value=0.00031  Score=61.40  Aligned_cols=97  Identities=10%  Similarity=-0.077  Sum_probs=81.6

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684          189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL  267 (593)
Q Consensus       189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll  267 (593)
                      +...+..+...+...|++++|...|++.....  | +...|..+..+|...|++++|.+.|++.....- -+...+..+.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg   96 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAA   96 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence            44577788889999999999999999998743  4 466788888999999999999999999886431 2456688899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 007684          268 KLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       268 ~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .+|...|+.++|...|++..+
T Consensus        97 ~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999876

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.51  E-value=0.0046  Score=57.36  Aligned_cols=143  Identities=11%  Similarity=0.008  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684          121 FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLA  200 (593)
Q Consensus       121 ~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~  200 (593)
                      .+|++.|++..+.|   +...+..|=..|...                ++.++|++.|++..+.|   +..++..|...|
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~----------------~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y   60 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSS----------------GDYQKAEYWAQKAAAQG---DGDALALLAQLK   60 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHTT---CHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcC----------------CCHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence            35778888888875   556666665566664                59999999999998876   667888888888


Q ss_pred             HhcC----ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 007684          201 VAKE----DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVV-PEEPELSALLKLSV  271 (593)
Q Consensus       201 ~~~g----~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~Ll~~~~  271 (593)
                      .. +    +.++|.+.|++..+.|   +...+..|-..|..    .++.++|.++|++..+.|.. -+...+..|-..|.
T Consensus        61 ~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~  136 (212)
T 3rjv_A           61 IR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA  136 (212)
T ss_dssp             TS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred             Hc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence            88 7    8999999999998865   34567777777876    88999999999999876632 02567888888888


Q ss_pred             h----cCCHHHHHHHHHHHHHc
Q 007684          272 D----AKKVDKVYEILHRLRTL  289 (593)
Q Consensus       272 ~----~g~~~~a~~~l~~m~~~  289 (593)
                      .    .++.++|...|++..+.
T Consensus       137 ~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          137 SGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             HTSSSSCCHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCHHHHHHHHHHHHHc
Confidence            8    77999999999999875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.50  E-value=0.0014  Score=54.86  Aligned_cols=96  Identities=9%  Similarity=-0.054  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS  270 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~  270 (593)
                      ..+..+...+...|++++|...+++..+..- .+...+..+...|...|+.++|.+.+++..+..- .+...+..+..++
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~   94 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHHH
Confidence            3444444445555555555555554443210 1233444444444455555555555554443211 1233444444455


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 007684          271 VDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       271 ~~~g~~~~a~~~l~~m~~  288 (593)
                      ...|++++|.+.+++..+
T Consensus        95 ~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            555555555555554443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.49  E-value=0.0012  Score=55.75  Aligned_cols=107  Identities=11%  Similarity=0.059  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCC----HHHH
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG--VVPE----EPEL  263 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~  263 (593)
                      .++..+-..+.+.|++++|.+.|++..+.  .|+ ...|+.+..+|.+.|++++|.+.+++..+..  ..++    ..+|
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            46777888899999999999999998874  355 5678889999999999999999998876422  1122    2357


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684          264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII  301 (593)
Q Consensus       264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l  301 (593)
                      ..+..++...|++++|.+.|++..+  ..|++.+...|
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l  122 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV  122 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence            7788888899999999999998766  34666655444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.48  E-value=0.0019  Score=56.63  Aligned_cols=103  Identities=12%  Similarity=-0.130  Sum_probs=86.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684          189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL  267 (593)
Q Consensus       189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll  267 (593)
                      +...+..+...+.+.|++++|...|++....  .|+ ...|..+..+|.+.|++++|.+.|++..+..- -+...|..+.
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg  111 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTG  111 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHH
Confidence            3447888888999999999999999999884  355 67888899999999999999999999986442 2356688999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHccCCCCHH
Q 007684          268 KLSVDAKKVDKVYEILHRLRTLVRQVSES  296 (593)
Q Consensus       268 ~~~~~~g~~~~a~~~l~~m~~~~~~~~~~  296 (593)
                      .+|...|+.++|...|++..+.  .|+..
T Consensus       112 ~~~~~lg~~~eA~~~~~~al~l--~~~~~  138 (151)
T 3gyz_A          112 QCQLRLKAPLKAKECFELVIQH--SNDEK  138 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence            9999999999999999999873  35543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.46  E-value=0.0029  Score=53.38  Aligned_cols=93  Identities=11%  Similarity=0.068  Sum_probs=79.9

Q ss_pred             ccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhH
Q 007684          165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDK  243 (593)
Q Consensus       165 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~  243 (593)
                      +.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|.+.+++..+..  |+ ...|..+..+|...|++++
T Consensus        23 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~   99 (126)
T 4gco_A           23 YFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACLVAMREWSK   99 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCCCHHH
Confidence            456799999999999988776 6678899999999999999999999999998743  54 6789999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHH
Q 007684          244 AYEVDAHMGESGVVPEEPE  262 (593)
Q Consensus       244 A~~l~~~m~~~g~~p~~~t  262 (593)
                      |.+.|++..+.  .|+...
T Consensus       100 A~~~~~~al~l--~P~~~~  116 (126)
T 4gco_A          100 AQRAYEDALQV--DPSNEE  116 (126)
T ss_dssp             HHHHHHHHHHH--CTTCHH
T ss_pred             HHHHHHHHHHH--CcCCHH
Confidence            99999998864  355433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.45  E-value=0.0058  Score=64.05  Aligned_cols=219  Identities=11%  Similarity=0.022  Sum_probs=103.9

Q ss_pred             CCChhhHHhhcCCccccchHHHHHHHhcCCCc---ccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCC-----C
Q 007684           48 FTKPITDIKQNRFSADLTTGLCTLAFSKKSTV---NESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRG-----D  119 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~  119 (593)
                      +...+....+.|.+ +.. ..|-..|...|+.   ++|...|....       ..   +...+..|-..+...+     +
T Consensus        22 A~~~~~~aa~~g~~-~A~-~~Lg~~y~~~g~~~d~~~A~~~~~~A~-------~~---~~~A~~~Lg~~~~~~~~~~~~~   89 (452)
T 3e4b_A           22 AQQNYQQLAELGYS-EAQ-VGLADIQVGTRDPAQIKQAEATYRAAA-------DT---SPRAQARLGRLLAAKPGATEAE   89 (452)
T ss_dssp             HHHHHHHHHHHTCC-TGG-GTCC--------------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred             HHHHHHHHHHCCCH-HHH-HHHHHHHHccCCCCCHHHHHHHHHHHH-------hC---CHHHHHHHHHHHHhCCCCCCcC
Confidence            55555555566633 222 2233334557777   89999996665       22   3334555555455544     8


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCC-------------------cccc----cccHHHHHH
Q 007684          120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR-------------------ENDS----NLGLKRGFE  176 (593)
Q Consensus       120 ~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~-------------------~~~~----~g~~~~a~~  176 (593)
                      .++|+.+|++..+.|...   .+..|-..|...+..+.......                   .+..    ....+.+..
T Consensus        90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~  166 (452)
T 3e4b_A           90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER  166 (452)
T ss_dssp             HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence            899999999999887543   34444445554432111100000                   0000    012333333


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc----CChhHHHHHHH
Q 007684          177 IFQQMITDKVDPNEATFTSVARLAVAKE---DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL----GNTDKAYEVDA  249 (593)
Q Consensus       177 l~~~M~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~----g~~~~A~~l~~  249 (593)
                      +++.... + .|+  ++..|...|...|   +.++|++.|++..+.|- ++...+..+...|...    ++.++|.+.|+
T Consensus       167 ~~~~a~~-~-~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~  241 (452)
T 3e4b_A          167 ICKAALN-T-TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLE  241 (452)
T ss_dssp             HHHHHTT-T-CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred             HHHHHHc-C-CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            3333322 2 233  6667777777777   77777777777777654 3333334455555443    57777777777


Q ss_pred             HHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcc
Q 007684          250 HMGESGVVPEEPELSALLKL-S--VDAKKVDKVYEILHRLRTLV  290 (593)
Q Consensus       250 ~m~~~g~~p~~~t~~~Ll~~-~--~~~g~~~~a~~~l~~m~~~~  290 (593)
                      +.. .|   +...+..|-.. +  ...++.++|.+.|++..+.+
T Consensus       242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g  281 (452)
T 3e4b_A          242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD  281 (452)
T ss_dssp             HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred             HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence            765 32   33444455544 3  34677777777777776654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.42  E-value=0.0009  Score=54.01  Aligned_cols=99  Identities=8%  Similarity=-0.107  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV-PEEPELSALLK  268 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~Ll~  268 (593)
                      ...+..+...+...|++++|...+++..+..- .+...|..+...|...|++++|.+.+++..+..-. .+...+..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            34566777888888999999999988876432 23567777888888899999999999888764311 14667888888


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHc
Q 007684          269 LSVDA-KKVDKVYEILHRLRTL  289 (593)
Q Consensus       269 ~~~~~-g~~~~a~~~l~~m~~~  289 (593)
                      ++... |+.++|.+.+++..+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHhCCHHHHHHHHHHHhhc
Confidence            88889 9999999998888764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.40  E-value=0.0027  Score=53.64  Aligned_cols=99  Identities=11%  Similarity=0.028  Sum_probs=85.0

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA  265 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  265 (593)
                      +.+...+..+...+...|++++|...|++.....  |+ ...|..+...|...|++++|...+++..+..- -+...+..
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~   82 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFF   82 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence            4567889999999999999999999999988743  44 57888899999999999999999999886542 25667888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 007684          266 LLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       266 Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +..++...|++++|...+++..+
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999876

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.40  E-value=0.0014  Score=64.31  Aligned_cols=164  Identities=11%  Similarity=0.002  Sum_probs=115.8

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---CCC
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE-----GVLRHKLDMCSKRGDVFEALRLYDDARSNGI---TLS  138 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~  138 (593)
                      ...+..+...|++++|...+.+.+.      .....+.     ..+..+...+...|++++|+..|++..+...   .+.
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  152 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELK------KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH------TCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhc------cccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence            4566778899999999888854441      1111111     1244466667888999999999999875421   111


Q ss_pred             --HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCChHHHH
Q 007684          139 --QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT---D-KVDP--NEATFTSVARLAVAKEDPEMAF  210 (593)
Q Consensus       139 --~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~---~-g~~p--~~~ty~~li~~~~~~g~~~~A~  210 (593)
                        ..+|+.+-..|...                |++++|.+.|++..+   . +-.+  ...+|..+...|...|++++|.
T Consensus       153 ~~~~~~~~lg~~y~~~----------------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al  216 (293)
T 2qfc_A          153 QNLYIENAIANIYAEN----------------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL  216 (293)
T ss_dssp             HHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence              34666666677775                599999999998763   2 1111  1258999999999999999999


Q ss_pred             HHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHH-HHHHHHHH
Q 007684          211 DLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKA-YEVDAHMG  252 (593)
Q Consensus       211 ~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A-~~l~~~m~  252 (593)
                      ..+++..+.    +.... ..+|..+...|.+.|+.++| ...+++..
T Consensus       217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            999987642    21111 46788899999999999999 77777654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.39  E-value=0.0015  Score=56.90  Aligned_cols=94  Identities=6%  Similarity=-0.146  Sum_probs=50.7

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      +..+...+.+.|++++|+..|++..+.. +.+...|..+-.+|...                |++++|++.|++..... 
T Consensus        24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~l~-   85 (148)
T 2vgx_A           24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAM----------------GQYDLAIHSYSYGAVMD-   85 (148)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHhcC-
Confidence            4455555666666666666666655442 11333443333344443                46666666666655543 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      +-+..++..+..++...|++++|.+.|++..+
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33445555566666666666666666665544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.31  E-value=0.0041  Score=51.55  Aligned_cols=111  Identities=12%  Similarity=0.102  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCC----HHHH
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG--VVPE----EPEL  263 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~  263 (593)
                      ..++..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++.....  ..++    ...+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            3567788888999999999999999988743 1345678888889999999999999999887532  1223    5678


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684          264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED  303 (593)
Q Consensus       264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~  303 (593)
                      ..+..++...|++++|.+.+++..+.  .|++.....+..
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~  120 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ  120 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence            88888999999999999999998774  345555544443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.30  E-value=0.0023  Score=62.45  Aligned_cols=96  Identities=9%  Similarity=-0.032  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      ...+..+...+.+.|++++|+..|++..+.  .| +...|..+-.++...                |++++|.+.+++..
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~al   65 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKM----------------QQPEQALADCRRAL   65 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHh----------------cCHHHHHHHHHHHH
Confidence            456788888999999999999999998876  44 556666555566665                69999999999998


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      +.. +-+...+..+..++...|++++|...|++..+
T Consensus        66 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           66 ELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             TSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            765 55778899999999999999999999999865

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.29  E-value=0.0018  Score=53.87  Aligned_cols=98  Identities=11%  Similarity=0.049  Sum_probs=78.8

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----cccHHHHHHHHHhcCChh
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI--PPK----LRSYGPALFGFCKLGNTD  242 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~ty~~li~~~~~~g~~~  242 (593)
                      |++++|...|++..... +.+...+..+...+...|++++|...+++.....-  .++    ..+|..+...|.+.|+++
T Consensus        18 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~   96 (131)
T 1elr_A           18 KDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK   96 (131)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHH
Confidence            69999999999988765 55788899999999999999999999999876321  122    567888899999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684          243 KAYEVDAHMGESGVVPEEPELSALLKL  269 (593)
Q Consensus       243 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~  269 (593)
                      +|.+.|++..+..  |+......+...
T Consensus        97 ~A~~~~~~~~~~~--~~~~~~~~l~~~  121 (131)
T 1elr_A           97 DAIHFYNKSLAEH--RTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence            9999999988743  565555544443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.29  E-value=0.0013  Score=55.67  Aligned_cols=94  Identities=9%  Similarity=0.049  Sum_probs=74.3

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC----cccHHHHHHHHHhcCChh
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG--IPPK----LRSYGPALFGFCKLGNTD  242 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~ty~~li~~~~~~g~~~  242 (593)
                      |++++|++.|++..+.. +-+..+|+.+..+|...|++++|++.+++..+..  ..++    ..+|..+..+|...|+++
T Consensus        22 ~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~  100 (127)
T 4gcn_A           22 KDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLS  100 (127)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHH
Confidence            69999999999988765 5578899999999999999999999999987521  1111    136777888889999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHH
Q 007684          243 KAYEVDAHMGESGVVPEEPELSA  265 (593)
Q Consensus       243 ~A~~l~~~m~~~g~~p~~~t~~~  265 (593)
                      +|.+.|++....  .||..+...
T Consensus       101 ~A~~~~~kal~~--~~~~~~~~~  121 (127)
T 4gcn_A          101 LAVQWFHRSLSE--FRDPELVKK  121 (127)
T ss_dssp             HHHHHHHHHHHH--SCCHHHHHH
T ss_pred             HHHHHHHHHHhh--CcCHHHHHH
Confidence            999999987753  366554433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.28  E-value=0.0065  Score=49.16  Aligned_cols=97  Identities=10%  Similarity=0.002  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL  269 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~  269 (593)
                      ...+..+...+...|++++|.+.+++.....- .+...+..+...|...|++++|.+.+++..+..- .+...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence            45677788888899999999999999877431 2456778888888899999999999998876432 246678888888


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 007684          270 SVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       270 ~~~~g~~~~a~~~l~~m~~  288 (593)
                      +...|+.++|.+.+++..+
T Consensus        82 ~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            9999999999999988876

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.27  E-value=0.004  Score=62.47  Aligned_cols=123  Identities=11%  Similarity=-0.017  Sum_probs=85.1

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|++.|++..........             -..+.+.++- .+       ....|..+..+|.+.|++++|.+.+
T Consensus       161 g~~~~A~~~y~~Al~~~p~~~~-------------~~~~~~~~~~-~~-------~~~~~~nla~~~~~~g~~~~A~~~~  219 (336)
T 1p5q_A          161 GKYKQALLQYKKIVSWLEYESS-------------FSNEEAQKAQ-AL-------RLASHLNLAMCHLKLQAFSAAIESC  219 (336)
T ss_dssp             TCHHHHHHHHHHHHHHTTTCCC-------------CCSHHHHHHH-HH-------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhcccc-------------CChHHHHHHH-HH-------HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5999999999988764311100             0112222111 11       1367888999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhc
Q 007684          249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG  314 (593)
Q Consensus       249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~  314 (593)
                      ++..+.. ..+...|..+..+|...|++++|...|++..+..- -+...+..+...+...+.....
T Consensus       220 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          220 NKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            9998754 23667799999999999999999999999987422 2345566666666655554443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.27  E-value=0.0053  Score=60.60  Aligned_cols=204  Identities=10%  Similarity=0.022  Sum_probs=147.4

Q ss_pred             Cccccch--HHHHHHHhcCC--CcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHH----HcC---CCHHHHHHHHH
Q 007684           60 FSADLTT--GLCTLAFSKKS--TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMC----SKR---GDVFEALRLYD  128 (593)
Q Consensus        60 ~~~~~~~--~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~l~~  128 (593)
                      +.|+..|  +.=-..+...|  .+++++..+..++       ...+....+|+.--..+    .+.   +++++++.+++
T Consensus        62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L-------~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~  134 (306)
T 3dra_A           62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIA-------LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILE  134 (306)
T ss_dssp             HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH-------HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred             HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHH-------HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            4466666  55444555666  7888888887666       33344444544433333    444   78999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 007684          129 DARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK--RGFEIFQQMITDKVDPNEATFTSVARLAVAKED-  205 (593)
Q Consensus       129 ~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~--~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-  205 (593)
                      .+.+..- -|..+|+----+....                |.++  ++++.+++|.+.. +-|-.+|+.-.-.....+. 
T Consensus       135 ~~l~~~p-kny~aW~~R~~vl~~l----------------~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~  196 (306)
T 3dra_A          135 AMLSSDP-KNHHVWSYRKWLVDTF----------------DLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHL  196 (306)
T ss_dssp             HHHHHCT-TCHHHHHHHHHHHHHT----------------TCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGG
T ss_pred             HHHHhCC-CCHHHHHHHHHHHHHh----------------cccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence            9997742 3667777655555554                3556  9999999999877 5688889888777777776 


Q ss_pred             -----hHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 007684          206 -----PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK-AYEVDAHMGESG--VVPEEPELSALLKLSVDAKKVD  277 (593)
Q Consensus       206 -----~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~-A~~l~~~m~~~g--~~p~~~t~~~Ll~~~~~~g~~~  277 (593)
                           ++++++.++++..... -|...|+..-..+.+.|+... +.++..+..+.+  -..+...+..+.++|.+.|+.+
T Consensus       197 ~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~  275 (306)
T 3dra_A          197 ATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN  275 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred             chhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence                 8999999999987543 346778888888888887544 556777665433  1346778999999999999999


Q ss_pred             HHHHHHHHHHHc
Q 007684          278 KVYEILHRLRTL  289 (593)
Q Consensus       278 ~a~~~l~~m~~~  289 (593)
                      +|.++++.+.+.
T Consensus       276 ~A~~~~~~l~~~  287 (306)
T 3dra_A          276 ESRTVYDLLKSK  287 (306)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999999763

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.25  E-value=0.0067  Score=49.09  Aligned_cols=85  Identities=9%  Similarity=0.026  Sum_probs=73.2

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|.+.|++..... +.+...+..+...+...|++++|...+++..+..- .+...+..+..+|...|+.++|.+.+
T Consensus        18 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~   95 (118)
T 1elw_A           18 GNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEEAKRTY   95 (118)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            69999999999998765 45788899999999999999999999999987432 24677888999999999999999999


Q ss_pred             HHHHhCC
Q 007684          249 AHMGESG  255 (593)
Q Consensus       249 ~~m~~~g  255 (593)
                      ++..+..
T Consensus        96 ~~~~~~~  102 (118)
T 1elw_A           96 EEGLKHE  102 (118)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHcC
Confidence            9988643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.25  E-value=0.0033  Score=52.50  Aligned_cols=96  Identities=17%  Similarity=0.051  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK  268 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~  268 (593)
                      ...+..+...+.+.|++++|...|++..+..  |+ ...|..+..+|.+.|++++|.+.+++..+..- -+...|..+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~   80 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKAT   80 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence            3467777888889999999999999987743  43 57788888999999999999999998886432 24566888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 007684          269 LSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       269 ~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ++...|++++|...|++..+
T Consensus        81 ~~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           81 AQIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHH
Confidence            99999999999999998876

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.24  E-value=0.0013  Score=69.23  Aligned_cols=135  Identities=12%  Similarity=-0.013  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      ..+..+-..|.+.|++++|+..|++..+.  .|+...          .                 .-+...+ ...    
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~----------~-----------------~~~~~~~-~~~----  314 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYG----------L-----------------SEKESKA-SES----  314 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCS----------C-----------------CHHHHHH-HHH----
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hccccc----------C-----------------ChHHHHH-HHH----
Confidence            35888899999999999999999998764  222100          0                 0000000 000    


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHH
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPE  262 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t  262 (593)
                         ....+|..+..+|.+.|++++|...+++..+..  |+ ...|..+..+|...|++++|...|++..+.  .|+ ...
T Consensus       315 ---~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a  387 (457)
T 1kt0_A          315 ---FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAA  387 (457)
T ss_dssp             ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CH
T ss_pred             ---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHH
Confidence               012345555555555555555555555555422  22 344555555555556666665555555532  222 223


Q ss_pred             HHHHHHHHHhcCCHHHHH
Q 007684          263 LSALLKLSVDAKKVDKVY  280 (593)
Q Consensus       263 ~~~Ll~~~~~~g~~~~a~  280 (593)
                      +..+..++.+.|+.+++.
T Consensus       388 ~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          388 RLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444555555555554443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.23  E-value=0.0043  Score=68.31  Aligned_cols=208  Identities=8%  Similarity=-0.072  Sum_probs=143.9

Q ss_pred             HHHHhcCCCcccCC-CCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC---------CCC-
Q 007684           70 TLAFSKKSTVNESS-APNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGI---------TLS-  138 (593)
Q Consensus        70 i~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~-  138 (593)
                      +..+-..|+.++|. .++....       ...+.+...+-..+...-+.|+++.|.++|+.+.+...         .|+ 
T Consensus       350 a~~~~~~~~~~~a~r~il~rAi-------~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~  422 (679)
T 4e6h_A          350 ANYQGEKNTDSTVITKYLKLGQ-------QCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN  422 (679)
T ss_dssp             HHHHHHHSCCTTHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence            33445567777775 6664333       23334455577788888899999999999999886410         132 


Q ss_pred             -----------HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc-CC
Q 007684          139 -----------QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD-KVDPNEATFTSVARLAVAK-ED  205 (593)
Q Consensus       139 -----------~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~li~~~~~~-g~  205 (593)
                                 ...|...+....+.                |.++.|..+|....+. + ......|...+..-.+. ++
T Consensus       423 ~~~~~~~~~~~~~vWi~y~~~erR~----------------~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          423 ESAINQLKSKLTYVYCVYMNTMKRI----------------QGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----------------HCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSC
T ss_pred             hhhhhhhccchHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCC
Confidence                       23455556655554                5899999999999876 3 22233343333333344 45


Q ss_pred             hHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 007684          206 PEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP--EEPELSALLKLSVDAKKVDKVYEI  282 (593)
Q Consensus       206 ~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~Ll~~~~~~g~~~~a~~~  282 (593)
                      .+.|.++|+...+. . |+ ...+...+......|+.+.|..+|+........+  ....|...++.-.+.|+.+.+..+
T Consensus       486 ~e~Ar~ife~~Lk~-~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v  563 (679)
T 4e6h_A          486 TKTACKVLELGLKY-F-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL  563 (679)
T ss_dssp             CHHHHHHHHHHHHH-H-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHH-C-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999998874 3 44 3445677777778999999999999988654322  235688999998999999999999


Q ss_pred             HHHHHHccCCCCHHHHHHHHHHH
Q 007684          283 LHRLRTLVRQVSESTFKIIEDWF  305 (593)
Q Consensus       283 l~~m~~~~~~~~~~t~~~l~~~~  305 (593)
                      .+++.+.  .|+......+.+-|
T Consensus       564 ~~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          564 EKRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHH--STTCCHHHHHHHHT
T ss_pred             HHHHHHh--CCCCcHHHHHHHHh
Confidence            9999874  35555666666655

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.21  E-value=0.0034  Score=53.91  Aligned_cols=93  Identities=8%  Similarity=-0.155  Sum_probs=57.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK  185 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g  185 (593)
                      +..+...+.+.|++++|...|++..+.  .| +...|..+-.+|...                |++++|+..|++.....
T Consensus        21 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A           21 LYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSL----------------GLYEQALQSYSYGALMD   82 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHHhcC
Confidence            455556666777777777777776655  23 334444433344443                46777777777766554


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                       +-+...+..+..++...|++++|.+.|++..+
T Consensus        83 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           83 -INEPRFPFHAAECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             34555666666677777777777777776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.21  E-value=0.0055  Score=52.21  Aligned_cols=100  Identities=14%  Similarity=-0.029  Sum_probs=84.4

Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK----LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE  262 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  262 (593)
                      +.+...+..+...+...|++++|.+.|++..+.  .|+    ...|..+...|...|++++|.+.+++..... ..+...
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  101 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA  101 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence            346778888999999999999999999999874  365    5778888899999999999999999987643 125667


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          263 LSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       263 ~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      +..+..++...|+.++|...|++..+.
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            888899999999999999999998763

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.20  E-value=0.0037  Score=55.12  Aligned_cols=98  Identities=17%  Similarity=0.082  Sum_probs=82.5

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684          189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL  267 (593)
Q Consensus       189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll  267 (593)
                      +...+..+...+...|++++|.+.|++..+..  | +...|..+..+|.+.|++++|.+.|++..+..- -+...|..+.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg   86 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence            45578888889999999999999999998743  4 467888899999999999999999999886542 2467788899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 007684          268 KLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       268 ~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      .+|...|++++|...|++..+.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999999998763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.20  E-value=0.0035  Score=53.82  Aligned_cols=96  Identities=8%  Similarity=-0.088  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK  268 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~  268 (593)
                      ...+..+...+...|++++|...|++.....  | +...|..+..+|.+.|++++|...|++.....- -+...+..+..
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~   94 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence            3456677788899999999999999998743  5 456788888999999999999999999886542 24456788888


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 007684          269 LSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       269 ~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +|...|++++|...|++..+
T Consensus        95 ~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999998876

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.19  E-value=0.0027  Score=51.09  Aligned_cols=85  Identities=11%  Similarity=0.024  Sum_probs=73.4

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CcccHHHHHHHHHhc-CChhHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP--KLRSYGPALFGFCKL-GNTDKAY  245 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~ty~~li~~~~~~-g~~~~A~  245 (593)
                      |++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+..- .  +...+..+...|.+. |+.++|.
T Consensus        20 ~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~A~   97 (112)
T 2kck_A           20 GNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADALRYIEGKEVEAE   97 (112)
T ss_dssp             CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHTTCSSCSHHHH
T ss_pred             hhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHhCCHHHHH
Confidence            69999999999988765 55778899999999999999999999999987532 2  357788899999999 9999999


Q ss_pred             HHHHHHHhCC
Q 007684          246 EVDAHMGESG  255 (593)
Q Consensus       246 ~l~~~m~~~g  255 (593)
                      +.+++.....
T Consensus        98 ~~~~~~~~~~  107 (112)
T 2kck_A           98 IAEARAKLEH  107 (112)
T ss_dssp             HHHHHHGGGC
T ss_pred             HHHHHHhhcc
Confidence            9999988644

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.17  E-value=0.011  Score=49.70  Aligned_cols=97  Identities=10%  Similarity=-0.048  Sum_probs=81.1

Q ss_pred             CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684          138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK  217 (593)
Q Consensus       138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~  217 (593)
                      +...|..+-..+...                |++++|.+.|++..... +.+...+..+...+...|++++|...+++..
T Consensus         8 ~~~~~~~~g~~~~~~----------------~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al   70 (137)
T 3q49_B            8 SAQELKEQGNRLFVG----------------RKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL   70 (137)
T ss_dssp             CHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHh----------------CcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            455565555566654                59999999999988765 5578899999999999999999999999998


Q ss_pred             hCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          218 SFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       218 ~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      +..  |+ ...|..+..+|...|++++|.+.|++..+
T Consensus        71 ~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           71 ELD--GQSVKAHFFLGQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhC--chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            743  44 67888899999999999999999998874

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.17  E-value=0.013  Score=49.86  Aligned_cols=98  Identities=13%  Similarity=-0.057  Sum_probs=71.8

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHH
Q 007684          102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS----QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI  177 (593)
Q Consensus       102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l  177 (593)
                      .....+..+...+.+.|++++|..+|++..+.  .|+    ...|..+-.+|...                |++++|.+.
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~----------------~~~~~A~~~   87 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKL----------------EDYDKAETE   87 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHH----------------ccHHHHHHH
Confidence            34556888888888999999999999988876  455    34444444455554                588888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       178 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      |++..+.. +.+...+..+..++...|++++|.+.+++..+
T Consensus        88 ~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A           88 ASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            88877654 34566777778888888888888888887766

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.15  E-value=0.0075  Score=54.93  Aligned_cols=98  Identities=12%  Similarity=-0.021  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC--------------cccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGI-PPK--------------LRSYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~--------------~~ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      ...+..+...+...|++++|.+.|++..+..- .|+              ...|..+..+|.+.|++++|...+++....
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            34677788889999999999999999986321 121              167888889999999999999999998864


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          255 GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       255 g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      . ..+...+..+..+|...|++++|...|++..+
T Consensus       118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A          118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  150 (198)
T ss_dssp             S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            3 23567788899999999999999999998876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.12  E-value=0.0056  Score=51.04  Aligned_cols=83  Identities=11%  Similarity=0.050  Sum_probs=73.4

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      |++++|++.|++..+.. +.+...|..+..++.+.|++++|...+++..+..  |+ ...|..+..+|...|+.++|.+.
T Consensus        18 ~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~   94 (126)
T 3upv_A           18 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALET   94 (126)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence            69999999999988765 5678899999999999999999999999998743  54 56888899999999999999999


Q ss_pred             HHHHHhC
Q 007684          248 DAHMGES  254 (593)
Q Consensus       248 ~~~m~~~  254 (593)
                      |++..+.
T Consensus        95 ~~~al~~  101 (126)
T 3upv_A           95 LDAARTK  101 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998753

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.11  E-value=0.0014  Score=69.28  Aligned_cols=121  Identities=7%  Similarity=0.016  Sum_probs=93.1

Q ss_pred             cccHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCCC-cccHHHHHH
Q 007684          168 NLGLKRGFEIFQQMITD---KVDP----NEATFTSVARLAVAKEDPEMAFDLVKQMKS-----FG-IPPK-LRSYGPALF  233 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~---g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~ty~~li~  233 (593)
                      +|++++|..++++..+.   -+.|    ...++++|..+|...|++++|..++++..+     .| -.|+ ..+|+.|..
T Consensus       322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  401 (490)
T 3n71_A          322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL  401 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            47999999999887642   1222    345899999999999999999999998753     22 2344 468999999


Q ss_pred             HHHhcCChhHHHHHHHHHHh-----CCCC-CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          234 GFCKLGNTDKAYEVDAHMGE-----SGVV-PEEPE-LSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       234 ~~~~~g~~~~A~~l~~~m~~-----~g~~-p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .|...|++++|+.++++..+     .|-. |+... .+.|-.++...+.+++|+.++.++++
T Consensus       402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998763     2322 33333 55666777788999999999999976

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.11  E-value=0.0032  Score=66.60  Aligned_cols=117  Identities=11%  Similarity=0.048  Sum_probs=91.1

Q ss_pred             CcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCh
Q 007684          163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNT  241 (593)
Q Consensus       163 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~  241 (593)
                      ..+.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|.+.+++..+.  .|+ ...|..+..+|.+.|+.
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence            34556789999999999988765 456889999999999999999999999999885  354 57888899999999999


Q ss_pred             hHHHHHHHHHHhCCCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 007684          242 DKAYEVDAHMGESGVVPE-EPELSALLKL--SVDAKKVDKVYEILH  284 (593)
Q Consensus       242 ~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~--~~~~g~~~~a~~~l~  284 (593)
                      ++|.+.|++..+..  |+ ...+..+..+  +.+.|++++|.++++
T Consensus        91 ~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999988643  22 2234444444  788899999998887

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.0026  Score=65.67  Aligned_cols=203  Identities=10%  Similarity=-0.006  Sum_probs=134.6

Q ss_pred             HHHhcCCCcccCCCCcccccchHHhhhhc----C------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCH
Q 007684           71 LAFSKKSTVNESSAPNTGTMSNKSKKKAR----R------ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQ  139 (593)
Q Consensus        71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~  139 (593)
                      ..+.+.|++++|.+.|.+.+.........    .      ...+..+..+...|.+.|++++|.+++..+.+. +-.++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            34566677777777765544111000000    0      001234788999999999999999999987643 111222


Q ss_pred             H---HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 007684          140 H---HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT----DKVDPN-EATFTSVARLAVAKEDPEMAFD  211 (593)
Q Consensus       140 ~---ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~  211 (593)
                      .   ....++..+...               .|..+.|.+++++...    .+..+. ..++..+...+...|++++|..
T Consensus        92 ~~~~~~~~~l~~~~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQV---------------PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA  156 (434)
T ss_dssp             HHHHHHHHHHHHHCSC---------------CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence            1   223334433333               3689999999988653    343444 3578889999999999999999


Q ss_pred             HHHHHHh--CCC--CCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 007684          212 LVKQMKS--FGI--PPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVVPE--EPELSALLKLSVDAKKVDKVY  280 (593)
Q Consensus       212 l~~~m~~--~g~--~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~Ll~~~~~~g~~~~a~  280 (593)
                      ++++...  .+.  .|. ..+|..++..|...|++++|..++++....    +..+.  ...+..+...+...|++++|.
T Consensus       157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~  236 (434)
T 4b4t_Q          157 LINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF  236 (434)
T ss_dssp             HHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            9998854  222  122 357899999999999999999999987631    22112  234666777778899999999


Q ss_pred             HHHHHHHH
Q 007684          281 EILHRLRT  288 (593)
Q Consensus       281 ~~l~~m~~  288 (593)
                      ..+.+..+
T Consensus       237 ~~~~~a~~  244 (434)
T 4b4t_Q          237 SYFFESFE  244 (434)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88877654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.09  E-value=0.0031  Score=54.37  Aligned_cols=130  Identities=13%  Similarity=0.002  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSNGI-TLSQ----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ  180 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~  180 (593)
                      .+..+-..+...|++++|+..+++..+..- ..+.    .++..+-..+...                |++++|.+.+++
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~   74 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL----------------GEFETASEYYKK   74 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHH
Confidence            477888888999999999999988765411 0111    2333333344443                477777777776


Q ss_pred             HHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684          181 MITD----KVDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAH  250 (593)
Q Consensus       181 M~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~  250 (593)
                      ....    +-.+ ...++..+...+...|++++|.+.+++..+.    +-.+. ..++..+...|...|+.++|.+.+++
T Consensus        75 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  154 (164)
T 3ro3_A           75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  154 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            5432    1111 1335566666666677777777666665431    11011 22344444445555555555555544


Q ss_pred             H
Q 007684          251 M  251 (593)
Q Consensus       251 m  251 (593)
                      .
T Consensus       155 a  155 (164)
T 3ro3_A          155 H  155 (164)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.08  E-value=0.013  Score=57.06  Aligned_cols=97  Identities=10%  Similarity=-0.003  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684          189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL  267 (593)
Q Consensus       189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll  267 (593)
                      +...+..+...+...|++++|...|++..+.  .| +...|..+..+|.+.|++++|.+.+++..+.. .-+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            3445555666666666666666666666552  23 34555556666666666666666666655432 12334455666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 007684          268 KLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       268 ~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .+|...|++++|...|++..+
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            666666666666666665544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.06  E-value=0.0028  Score=54.70  Aligned_cols=120  Identities=8%  Similarity=-0.069  Sum_probs=90.2

Q ss_pred             ccHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-cccHHHHHHHHHhc
Q 007684          169 LGLKRGFEIFQQMITDKV-DPN----EATFTSVARLAVAKEDPEMAFDLVKQMKSF----GIPPK-LRSYGPALFGFCKL  238 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~-~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~  238 (593)
                      |++++|.+.+++..+... .++    ..++..+...+...|++++|.+.+++..+.    +-.+. ..++..+...+...
T Consensus        23 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  102 (164)
T 3ro3_A           23 GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL  102 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            599999999998765311 112    147888999999999999999999997642    11111 45678888999999


Q ss_pred             CChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          239 GNTDKAYEVDAHMGES----GVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       239 g~~~~A~~l~~~m~~~----g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      |++++|.+.+++..+.    +..+. ...+..+...+...|+.++|.+.+++..+
T Consensus       103 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          103 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            9999999999987642    22111 34577888889999999999999988765

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.03  E-value=0.014  Score=51.30  Aligned_cols=94  Identities=12%  Similarity=0.001  Sum_probs=49.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      +..+...+.+.|++++|+..|++..+.. +-+...|..+-.+|...                |++++|++.|++..+.. 
T Consensus        14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~----------------g~~~~A~~~~~~al~~~-   75 (164)
T 3sz7_A           14 LKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSAS----------------GQHEKAAEDAELATVVD-   75 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHc----------------cCHHHHHHHHHHHHHhC-
Confidence            5555566666666666666666655442 11333333333344443                35556666655555443 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      +-+...|..+..+|...|++++|.+.|++..+
T Consensus        76 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           76 PKYSKAWSRLGLARFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            33445555555555555555555555555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.03  E-value=0.0063  Score=64.29  Aligned_cols=117  Identities=12%  Similarity=-0.039  Sum_probs=90.8

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCH
Q 007684          112 DMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE  190 (593)
Q Consensus       112 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~  190 (593)
                      ..+.+.|++++|++.|++..+.  .| +...|..+-.+|.+.                |++++|.+.|++..+.. +-+.
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~~al~l~-p~~~   74 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRT----------------ECYGYALGDATRAIELD-KKYI   74 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHSC-TTCH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHh----------------cCHHHHHHHHHHHHHhC-CCCH
Confidence            3456789999999999998876  34 466777666677775                59999999999999876 5577


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHH--HHhcCChhHHHHHHH
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFG--FCKLGNTDKAYEVDA  249 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~--~~~~g~~~~A~~l~~  249 (593)
                      .++..+..+|...|++++|.+.+++..+.  .|+ ...+..+..+  +.+.|++++|.+.++
T Consensus        75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           75 KGYYRRAASNMALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            89999999999999999999999999874  344 3455556555  888899999999998

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.99  E-value=0.001  Score=70.44  Aligned_cols=137  Identities=9%  Similarity=-0.067  Sum_probs=88.9

Q ss_pred             HHhcCCCcccCCCCcccccchHHhhhhcCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007684           72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEG--VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC  149 (593)
Q Consensus        72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~  149 (593)
                      .+...|++++|+.++.+.+ ....+.-+...|..  +++.|...|...|++++|+.++++..+                 
T Consensus       318 ~~~~qg~~~eA~~l~~~aL-~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~-----------------  379 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECL-EKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD-----------------  379 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHH-HHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred             HHHhCCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------------
Confidence            3668899999999987777 33333333333333  288888888888888888888765432                 


Q ss_pred             HccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCC-CC
Q 007684          150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-----FGI-PP  223 (593)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~-~p  223 (593)
                                                 +++.......+-...+++.|...|...|++++|..++++..+     .|- .|
T Consensus       380 ---------------------------i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp  432 (490)
T 3n71_A          380 ---------------------------GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP  432 (490)
T ss_dssp             ---------------------------HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             ---------------------------HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence                                       222222222222334678888888888888888888777642     221 12


Q ss_pred             C-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          224 K-LRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       224 ~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      + ..+.+.+-.++...+..++|+.+|..+.+
T Consensus       433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 23456666777777888888888888764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.99  E-value=0.011  Score=49.19  Aligned_cols=92  Identities=15%  Similarity=-0.040  Sum_probs=70.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHH
Q 007684          194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL----RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE----EPELSA  265 (593)
Q Consensus       194 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~  265 (593)
                      ..+...+...|++++|.+.|++..+..  |+.    ..+..+..+|.+.|++++|.+.|++.....  |+    ...+..
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~   81 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK   81 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence            345667778899999999999887633  443    366677888888999999999998887643  33    455777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          266 LLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       266 Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      +..++...|+.++|...|+++.+.
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            888888899999999999888763

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.96  E-value=0.00097  Score=55.29  Aligned_cols=84  Identities=7%  Similarity=-0.054  Sum_probs=59.6

Q ss_pred             cccHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 007684          168 NLGLKRGFEIFQQMITDKV--DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKA  244 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A  244 (593)
                      .|++++|++.|++..+.+.  +-+..++..+...|...|++++|...+++..+..  |+ ...+..+..+|.+.|+.++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence            3677888888888877541  2344577778888888888888888888887643  44 56677778888888888888


Q ss_pred             HHHHHHHHh
Q 007684          245 YEVDAHMGE  253 (593)
Q Consensus       245 ~~l~~~m~~  253 (593)
                      .+.+++...
T Consensus        81 ~~~~~~al~   89 (117)
T 3k9i_A           81 VELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.89  E-value=0.0046  Score=59.95  Aligned_cols=134  Identities=10%  Similarity=-0.095  Sum_probs=90.6

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      +....-.....+...|++++|.++|+.+...+  |+......+-..|.+.                +++++|+..|+...
T Consensus       101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~----------------~r~~dA~~~l~~a~  162 (282)
T 4f3v_A          101 PLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAA----------------ERWTDVIDQVKSAG  162 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHT----------------TCHHHHHHHHTTGG
T ss_pred             HhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHc----------------CCHHHHHHHHHHhh
Confidence            45556677888889999999999999877653  4443222222344444                48999999997544


Q ss_pred             hCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684          183 TDKVDPN--EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYEVDAHMGESG  255 (593)
Q Consensus       183 ~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g  255 (593)
                      ... .|.  ...+..+-.++...|++++|++.|++.......|.  .........++.+.|+.++|..+|+++....
T Consensus       163 ~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          163 KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            321 111  23677778888888999999998888875433254  2234446677778888888888888887543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.88  E-value=0.0055  Score=59.43  Aligned_cols=130  Identities=11%  Similarity=-0.077  Sum_probs=97.4

Q ss_pred             ccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHH
Q 007684          167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKA  244 (593)
Q Consensus       167 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A  244 (593)
                      ..|++++|.++|+.+...+  |+....-.+...+.+.+++++|+..|+...... .|.  ...+-.+-.++.+.|++++|
T Consensus       114 ~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eA  190 (282)
T 4f3v_A          114 AQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEA  190 (282)
T ss_dssp             HHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHH
Confidence            4689999999999988755  555466666678999999999999998554421 121  23566688999999999999


Q ss_pred             HHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684          245 YEVDAHMGESGVVPE--EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII  301 (593)
Q Consensus       245 ~~l~~~m~~~g~~p~--~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l  301 (593)
                      ++.|++.......|.  .........++.+.|+.++|..+|+++...  .|+......|
T Consensus       191 l~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL  247 (282)
T 4f3v_A          191 ERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL  247 (282)
T ss_dssp             HHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred             HHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence            999999985444364  234666777888999999999999999884  3443333333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.86  E-value=0.0031  Score=52.76  Aligned_cols=90  Identities=8%  Similarity=-0.080  Sum_probs=47.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684          196 VARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK  274 (593)
Q Consensus       196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g  274 (593)
                      +...+.+.|++++|...+++..+.  .|+ ...|..+-.++.+.|+.++|...|++..+..- -+...+..+..++...|
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence            344455555666666655555542  232 34455555555555666666665555554321 12334555555555566


Q ss_pred             CHHHHHHHHHHHHH
Q 007684          275 KVDKVYEILHRLRT  288 (593)
Q Consensus       275 ~~~~a~~~l~~m~~  288 (593)
                      +.++|...+++..+
T Consensus       100 ~~~~A~~~~~~al~  113 (121)
T 1hxi_A          100 NANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHH
Confidence            66666666555543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.80  E-value=0.0093  Score=49.73  Aligned_cols=86  Identities=12%  Similarity=0.064  Sum_probs=75.0

Q ss_pred             ccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhH
Q 007684          165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDK  243 (593)
Q Consensus       165 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~  243 (593)
                      +.+.|++++|...|++..+.. +-+...+..+..++...|++++|...+++..+.  .|+ ...+..+..+|.+.|+.++
T Consensus        27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~  103 (121)
T 1hxi_A           27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANA  103 (121)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence            345799999999999998876 557888999999999999999999999999874  354 5678889999999999999


Q ss_pred             HHHHHHHHHh
Q 007684          244 AYEVDAHMGE  253 (593)
Q Consensus       244 A~~l~~~m~~  253 (593)
                      |.+.+++..+
T Consensus       104 A~~~~~~al~  113 (121)
T 1hxi_A          104 ALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=96.77  E-value=0.44  Score=46.69  Aligned_cols=233  Identities=9%  Similarity=0.032  Sum_probs=148.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccc--cHHHHHHHHHHHHhC
Q 007684          108 RHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNL--GLKRGFEIFQQMITD  184 (593)
Q Consensus       108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~l~~~M~~~  184 (593)
                      ..+.....+...-++|+.+++.+...  .|+ ...||.-=.+....                |  +++++++.++.+...
T Consensus        37 ~~~~a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l----------------~~~~~~eeL~~~~~~L~~   98 (306)
T 3dra_A           37 GLLLALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNL----------------PNRNLYDELDWCEEIALD   98 (306)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC----------------TTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHc----------------ccccHHHHHHHHHHHHHH
Confidence            33333344445557999999999877  343 34444433333332                3  899999999999987


Q ss_pred             CCCCCHHHHHHHHHHH----Hhc---CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChh--HHHHHHHHHHhCC
Q 007684          185 KVDPNEATFTSVARLA----VAK---EDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD--KAYEVDAHMGESG  255 (593)
Q Consensus       185 g~~p~~~ty~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--~A~~l~~~m~~~g  255 (593)
                      . +-+..+++.--..+    ...   +++++++++++++.+..- -+-.+|+.-.-.+.+.|..+  ++++.++++.+..
T Consensus        99 n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d  176 (306)
T 3dra_A           99 N-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD  176 (306)
T ss_dssp             C-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             C-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence            6 44556666655555    555   789999999999987431 23566777777777888888  9999999999866


Q ss_pred             CCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccch-hhhHHHhhh
Q 007684          256 VVPEEPELSALLKLSVDAKK------VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWD-VSKVREGIV  328 (593)
Q Consensus       256 ~~p~~~t~~~Ll~~~~~~g~------~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d-~~~~~~~~~  328 (593)
                      . -|...|+.-.-++...|.      ++++++.++++..... -+.+.+.-+-..+...+.      ..+ ...+...  
T Consensus       177 ~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~------~~~~~~~~~~~--  246 (306)
T 3dra_A          177 L-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDR------SITQLEEFSLQ--  246 (306)
T ss_dssp             T-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTC------CGGGGHHHHHT--
T ss_pred             C-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCC------ChHHHHHHHHH--
Confidence            5 367778777666666666      8888888888876322 244444444333322221      001 0001000  


Q ss_pred             cCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684          329 RGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH  405 (593)
Q Consensus       329 ~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~  405 (593)
                                                         ....-...+.....+.-+...|...|+.++|.+.|+...++-
T Consensus       247 -----------------------------------~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~  288 (306)
T 3dra_A          247 -----------------------------------FVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY  288 (306)
T ss_dssp             -----------------------------------TEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -----------------------------------HHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc
Confidence                                               000000112344566667777888999999999999987643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=96.69  E-value=0.028  Score=46.57  Aligned_cols=49  Identities=6%  Similarity=0.088  Sum_probs=24.1

Q ss_pred             ccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684          169 LGLKRGFEIFQQMITDKVDPN---EATFTSVARLAVAKEDPEMAFDLVKQMKS  218 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~  218 (593)
                      |++++|.+.|++..... +.+   ..++..+..++...|++++|...|+++.+
T Consensus        53 ~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           53 RNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35555555555554432 111   33444455555555555555555555544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.69  E-value=0.0022  Score=53.07  Aligned_cols=87  Identities=13%  Similarity=0.049  Sum_probs=65.0

Q ss_pred             cCCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH
Q 007684          116 KRGDVFEALRLYDDARSNGIT-LS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF  193 (593)
Q Consensus       116 ~~g~~~~A~~l~~~m~~~g~~-p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty  193 (593)
                      ..|++++|+..|++..+.+.. |+ ...+..+-.+|...                |++++|.+.|++..+.. +-+..++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~----------------~~~~~A~~~~~~al~~~-p~~~~~~   64 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL----------------GEYRKAEAVLANGVKQF-PNHQALR   64 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-CCchHHH
Confidence            458889999999999886421 22 34444444566665                69999999999998876 5567889


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhC
Q 007684          194 TSVARLAVAKEDPEMAFDLVKQMKSF  219 (593)
Q Consensus       194 ~~li~~~~~~g~~~~A~~l~~~m~~~  219 (593)
                      ..+..++...|++++|...+++....
T Consensus        65 ~~l~~~~~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           65 VFYAMVLYNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999998763

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.031  Score=57.47  Aligned_cols=161  Identities=8%  Similarity=-0.121  Sum_probs=114.5

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHH
Q 007684          112 DMCSKRGDVFEALRLYDDARSNGITLS----------------QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF  175 (593)
Q Consensus       112 ~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~  175 (593)
                      ..+.+.|++++|++.|..+.+..-..+                ...+..|..+|...                |++++|.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~----------------~~~~~a~   75 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTM----------------GAKDKLR   75 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHH----------------TCHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHC----------------CCHHHHH
Confidence            456788999999999999987632111                12355566677776                6999999


Q ss_pred             HHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCChhHHH
Q 007684          176 EIFQQMITD-KVDPNE----ATFTSVARLAVAKEDPEMAFDLVKQMKS----FGIPPK-LRSYGPALFGFCKLGNTDKAY  245 (593)
Q Consensus       176 ~l~~~M~~~-g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~  245 (593)
                      +.+.++... +..++.    .+.+.+-..+...|+.++|.+++++...    .+..+. ..++..+...|...|++++|.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  155 (434)
T 4b4t_Q           76 EFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL  155 (434)
T ss_dssp             HHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence            999987652 111222    1233333344457899999999988753    232232 467888999999999999999


Q ss_pred             HHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          246 EVDAHMGES----GVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       246 ~l~~~m~~~----g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .++++....    +-.+. ...+..++..|...|++++|..++++...
T Consensus       156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            999987632    22233 34588899999999999999999998765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.60  E-value=0.052  Score=46.33  Aligned_cols=113  Identities=7%  Similarity=-0.019  Sum_probs=94.2

Q ss_pred             cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhH
Q 007684          168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----LGNTDK  243 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~  243 (593)
                      ..+.++|++.|++..+.| .|+..    |-..|...+.+++|++.|++..+.|   +...+..+-..|..    .++.++
T Consensus         8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence            358999999999999988 44444    7777777888999999999998875   45677778888888    889999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccC
Q 007684          244 AYEVDAHMGESGVVPEEPELSALLKLSVD----AKKVDKVYEILHRLRTLVR  291 (593)
Q Consensus       244 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m~~~~~  291 (593)
                      |.++|++..+.|   +...+..|-..|..    .++.++|.+.|++..+.|.
T Consensus        80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999999998876   56778888888888    7899999999999988653

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.57  E-value=0.11  Score=57.06  Aligned_cols=167  Identities=7%  Similarity=-0.020  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHcCCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684          104 EGVLRHKLDMCSKRGDVFEAL-RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI  182 (593)
Q Consensus       104 ~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~  182 (593)
                      ...|-.....+-+.|+.++|. ++|++.... ++.+...|-..+......                |++++|.++|+.+.
T Consensus       343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~----------------~~~e~aR~iyek~l  405 (679)
T 4e6h_A          343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELN----------------TKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh----------------CCHHHHHHHHHHHH
Confidence            334444444555678888896 999988764 233444454555555554                58999999999987


Q ss_pred             hCCC---------CCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhc-C
Q 007684          183 TDKV---------DPN------------EATFTSVARLAVAKEDPEMAFDLVKQMKSF-GIPPKLRSYGPALFGFCKL-G  239 (593)
Q Consensus       183 ~~g~---------~p~------------~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~-g  239 (593)
                      ....         .|+            ...|...++...+.|..+.|..+|++..+. +. +....|-..+..--+. +
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~  484 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISK  484 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCC
Confidence            6420         142            236777888888899999999999999875 21 1223333222222233 4


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       240 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      +.+.|.++|+...+. +.-+..-+...++.....|+.++|..+|++....
T Consensus       485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~  533 (679)
T 4e6h_A          485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK  533 (679)
T ss_dssp             CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            699999999998864 3334555678888888899999999999998764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.42  E-value=0.012  Score=48.18  Aligned_cols=78  Identities=12%  Similarity=0.008  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684          173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m  251 (593)
                      +|++.|++..+.. +.+...+..+...+...|++++|...+++..+..  |+ ...|..+..+|.+.|+.++|...|++.
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5677777777655 4567788888889999999999999999887743  44 567777888888899999999888887


Q ss_pred             Hh
Q 007684          252 GE  253 (593)
Q Consensus       252 ~~  253 (593)
                      .+
T Consensus        80 l~   81 (115)
T 2kat_A           80 LA   81 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.40  E-value=0.032  Score=48.71  Aligned_cols=97  Identities=18%  Similarity=0.135  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CC---------CCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSF-------GI---------PPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~-------g~---------~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      ..+......+.+.|++++|...|.+....       .-         .|. ...|..+..+|.+.|++++|...+++..+
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            45667778888899999999999887653       00         122 35788888999999999999999998886


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          254 SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       254 ~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      .. +.+...|..+..+|...|++++|...|++..+
T Consensus        92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            53 23466788899999999999999999998876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.35  E-value=0.1  Score=44.45  Aligned_cols=112  Identities=12%  Similarity=0.049  Sum_probs=90.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684          118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVA  197 (593)
Q Consensus       118 g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li  197 (593)
                      +++++|+++|++..+.| .|+..    |=..|...                +..++|++.|++..+.|   +..++..|.
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g----------------~~~~~A~~~~~~Aa~~g---~~~a~~~Lg   64 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQ----------------INKQKLFQYLSKACELN---SGNGCRFLG   64 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTT----------------SCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcC----------------CCHHHHHHHHHHHHcCC---CHHHHHHHH
Confidence            46899999999999988 33333    33355554                36788999999998876   678888999


Q ss_pred             HHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 007684          198 RLAVA----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----LGNTDKAYEVDAHMGESGV  256 (593)
Q Consensus       198 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~  256 (593)
                      ..|..    .++.++|++.|++..+.|.   ...+..|-..|..    .++.++|.+.|++..+.|.
T Consensus        65 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           65 DFYENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCccHHHHHHHHHHHHcCCC---HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99988    8999999999999988753   4567778888888    8999999999999888764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.30  E-value=0.036  Score=48.60  Aligned_cols=96  Identities=7%  Similarity=-0.096  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------c-----ccHHHHHHHHHhcCChhHHHHHHHHHHhC---
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--------L-----RSYGPALFGFCKLGNTDKAYEVDAHMGES---  254 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~-----~ty~~li~~~~~~g~~~~A~~l~~~m~~~---  254 (593)
                      ..+......+.+.|++++|...|++..+.  .|+        .     ..|+.+-.++.+.|++++|...+++..+.   
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            34556677788899999999999998763  243        1     28889999999999999999999998863   


Q ss_pred             --CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          255 --GVVPEEP-EL----SALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       255 --g~~p~~~-t~----~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                        .+.|+.. .|    ...-.++...|++++|+..|++..+
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence              2257654 47    8888999999999999999999876

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.28  E-value=0.011  Score=59.21  Aligned_cols=145  Identities=11%  Similarity=-0.000  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      ..+..+-..+.+.|++++|+..|++..+.  .|+...       +...                |+.+++...+.     
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~----------------~~~~~~~~~l~-----  229 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLY----------------GKYQDMALAVK-----  229 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCC----------------HHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhc----------------ccHHHHHHHHH-----
Confidence            34778888899999999999999998765  333321       1121                35555543331     


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE-  262 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-  262 (593)
                           ...|..+..+|.+.|++++|...+++..+..  | +...|..+..+|...|++++|.+.|++..+  +.|+... 
T Consensus       230 -----~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a  300 (338)
T 2if4_A          230 -----NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAI  300 (338)
T ss_dssp             -----THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHH
Confidence                 1378888889999999999999999887743  5 356788888999999999999999998764  3354433 


Q ss_pred             HHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 007684          263 LSALLKL-SVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       263 ~~~Ll~~-~~~~g~~~~a~~~l~~m~~  288 (593)
                      +..|... ....+..+++..+|.+|..
T Consensus       301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          301 RRELRALAEQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             ---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4444444 2345567778888888865

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.20  E-value=0.08  Score=52.92  Aligned_cols=218  Identities=10%  Similarity=0.060  Sum_probs=137.2

Q ss_pred             cccch--HHHHHHHhcCC-CcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcC-C-CHHHHHHHHHHHHHCCCC
Q 007684           62 ADLTT--GLCTLAFSKKS-TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKR-G-DVFEALRLYDDARSNGIT  136 (593)
Q Consensus        62 ~~~~~--~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~  136 (593)
                      |+..+  +.=-..+...| .++++...+..++       ...+....+|+.---.+.+. + ++++++++++.+.+... 
T Consensus        85 P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L-------~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-  156 (349)
T 3q7a_A           85 PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA-------VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-  156 (349)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-------HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-
T ss_pred             chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-
Confidence            44444  33333344445 4777777776666       44555666666655555554 5 78899999988887643 


Q ss_pred             CCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hHHH
Q 007684          137 LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKED-------PEMA  209 (593)
Q Consensus       137 p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~-------~~~A  209 (593)
                      -|...|+----+..+.+..+.        .....+.++++.++++.+.. +-|..+|+.....+.+.++       ++++
T Consensus       157 kNy~AW~~R~wvl~~l~~~~~--------~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE  227 (349)
T 3q7a_A          157 KNYHTWAYLHWLYSHFSTLGR--------ISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDE  227 (349)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTC--------CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccccc--------cchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence            266666654433333210000        00113458999999999877 6688899999888888876       6889


Q ss_pred             HHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCh--------------------hHHHHHHHHHHhCC-----CCCCHHHH
Q 007684          210 FDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNT--------------------DKAYEVDAHMGESG-----VVPEEPEL  263 (593)
Q Consensus       210 ~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~--------------------~~A~~l~~~m~~~g-----~~p~~~t~  263 (593)
                      ++.+++.....  |+ ...|+-+-..+.+.|..                    .+..++..++...+     -.+....+
T Consensus       228 Le~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al  305 (349)
T 3q7a_A          228 LIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL  305 (349)
T ss_dssp             HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence            99999888743  54 56677666666666653                    23344444443322     13677788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH
Q 007684          264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF  298 (593)
Q Consensus       264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~  298 (593)
                      .-|.+.|...|+.++|.++++.+.+..-......+
T Consensus       306 ~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw  340 (349)
T 3q7a_A          306 EYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYW  340 (349)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHH
Confidence            99999999999999999999999764433333333

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.16  E-value=0.038  Score=56.09  Aligned_cols=136  Identities=14%  Similarity=0.070  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK  185 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g  185 (593)
                      .+..+-..+.+.|++++|+..|++..+.  .+..      .   ...                 ..+++.++    .   
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~------~---~~~-----------------~~~~~~~~----~---  269 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS------R---AAA-----------------EDADGAKL----Q---  269 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH------H---HHS-----------------CHHHHGGG----H---
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC------c---ccc-----------------ChHHHHHH----H---
Confidence            3777888899999999999999987753  0000      0   000                 11111110    0   


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHH
Q 007684          186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPEL  263 (593)
Q Consensus       186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~  263 (593)
                       +-+..+|..+..+|.+.|++++|.+.+++..+.  .|+ ...|..+..+|.+.|+.++|.+.|++..+..  | +...+
T Consensus       270 -~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~  344 (370)
T 1ihg_A          270 -PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQ  344 (370)
T ss_dssp             -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             -HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHH
Confidence             123456667777777777777777777777663  243 4566667777777777777777777766432  3 34445


Q ss_pred             HHHHHHHHhcCCHHHHHH
Q 007684          264 SALLKLSVDAKKVDKVYE  281 (593)
Q Consensus       264 ~~Ll~~~~~~g~~~~a~~  281 (593)
                      ..+..++...++.+++.+
T Consensus       345 ~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          345 AELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            556666666666655543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.16  E-value=0.054  Score=47.24  Aligned_cols=112  Identities=14%  Similarity=-0.014  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIFQQMIT  183 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~-~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~  183 (593)
                      ..+...-..+.+.|++++|+..|.+..+.            +.... ...              ..+.+     ...+. 
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~------------~~~~~~~~~--------------~~~~~-----~~~~~-   59 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTR------------LDTLILREK--------------PGEPE-----WVELD-   59 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHTSC--------------TTSHH-----HHHHH-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhcccCC--------------CCHHH-----HHHHH-
Confidence            34888889999999999999999987753            00000 000              00000     01111 


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                         +.+...|..+..+|.+.|++++|...+++..+..  |+ ...|..+..+|...|++++|...|++..+
T Consensus        60 ---~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           60 ---RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             ---HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence               2233456666666666666666666666665532  33 45566666666666666666666666654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.07  E-value=0.045  Score=55.53  Aligned_cols=85  Identities=11%  Similarity=-0.055  Sum_probs=65.9

Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CHHHHHHHHH
Q 007684          225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV-SESTFKIIED  303 (593)
Q Consensus       225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~~~t~~~l~~  303 (593)
                      ...|..+..+|.+.|++++|.+.+++..+..- -+...|..+..+|...|++++|.+.|++..+.  .| +......+..
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~  349 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLK  349 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            46888899999999999999999999986431 25667888999999999999999999998773  34 4445555555


Q ss_pred             HHhcchhhh
Q 007684          304 WFDSVDAAE  312 (593)
Q Consensus       304 ~~~~~~~~~  312 (593)
                      .+...+...
T Consensus       350 ~~~~~~~~~  358 (370)
T 1ihg_A          350 VKQKIKAQK  358 (370)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.00  E-value=0.065  Score=56.08  Aligned_cols=83  Identities=11%  Similarity=0.005  Sum_probs=63.4

Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHH
Q 007684          225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS-ESTFKIIED  303 (593)
Q Consensus       225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~-~~t~~~l~~  303 (593)
                      ...|..+..+|.+.|++++|...+++..+..- -+...|..+..+|...|++++|...|++..+.  .|+ ...+..+..
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~  393 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISM  393 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            36788899999999999999999999987542 35677999999999999999999999999773  343 334455555


Q ss_pred             HHhcchh
Q 007684          304 WFDSVDA  310 (593)
Q Consensus       304 ~~~~~~~  310 (593)
                      .+...+.
T Consensus       394 ~~~~~~~  400 (457)
T 1kt0_A          394 CQKKAKE  400 (457)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.026  Score=45.26  Aligned_cols=64  Identities=13%  Similarity=0.032  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      +...+..+...+...|++++|.+.+++..+..  | +...|..+..+|.+.|++++|.+.+++..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            45567778888888888888888888887642  4 3567777888888888888888888888753

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=95.80  E-value=0.089  Score=46.06  Aligned_cols=100  Identities=10%  Similarity=0.085  Sum_probs=77.9

Q ss_pred             ccHHHHHHHHHHHHhCCCC-C-----CHH-----HHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-cccH---
Q 007684          169 LGLKRGFEIFQQMITDKVD-P-----NEA-----TFTSVARLAVAKEDPEMAFDLVKQMKSF-----GIPPK-LRSY---  228 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~-p-----~~~-----ty~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~ty---  228 (593)
                      |++++|++.|++..+.... |     +..     .|+.+..++.+.|++++|+..+++..+.     .+.|+ ...|   
T Consensus        25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~  104 (159)
T 2hr2_A           25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA  104 (159)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHH
Confidence            6999999999998764321 0     333     8999999999999999999999999873     22576 4577   


Q ss_pred             -HHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHHHHHH
Q 007684          229 -GPALFGFCKLGNTDKAYEVDAHMGE-----SGVVPEEPELSALLK  268 (593)
Q Consensus       229 -~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~Ll~  268 (593)
                       ...-.++...|++++|.+.|++..+     .|+.+........+.
T Consensus       105 ~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~  150 (159)
T 2hr2_A          105 VYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI  150 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred             HHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence             8889999999999999999999863     466666555444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=95.70  E-value=0.02  Score=57.29  Aligned_cols=100  Identities=11%  Similarity=-0.050  Sum_probs=75.2

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|...|++.....  |+...       +...++.+++...+   .       ...|..+..+|.+.|++++|...+
T Consensus       193 g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~~~g~~~~A~~~~  253 (338)
T 2if4_A          193 EKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLIKLKRYDEAIGHC  253 (338)
T ss_dssp             SCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            69999999999877543  44332       22334444443322   1       247888999999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ++..+.. .-+...|..+..+|...|++++|...|++..+
T Consensus       254 ~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~  292 (338)
T 2if4_A          254 NIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK  292 (338)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9988643 23567799999999999999999999999865

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.68  E-value=0.022  Score=49.87  Aligned_cols=98  Identities=12%  Similarity=0.018  Sum_probs=69.1

Q ss_pred             cccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCC-cccHHHHH
Q 007684          164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP----------EMAFDLVKQMKSFGIPPK-LRSYGPAL  232 (593)
Q Consensus       164 ~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~----------~~A~~l~~~m~~~g~~p~-~~ty~~li  232 (593)
                      ...+.+.+++|.+.++...+.. +-+...|+.+-.++...+++          ++|...|++..+  +.|+ ...|..+-
T Consensus        11 ~~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG   87 (158)
T 1zu2_A           11 EFDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIG   87 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence            3345578999999999988877 66888899888888887765          488888888777  3465 46777788


Q ss_pred             HHHHhcC-----------ChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684          233 FGFCKLG-----------NTDKAYEVDAHMGESGVVPEEPELSAL  266 (593)
Q Consensus       233 ~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~L  266 (593)
                      .+|...|           ++++|.+.|++..+.  .|+...|...
T Consensus        88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~a  130 (158)
T 1zu2_A           88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKS  130 (158)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence            8887764           566666666666542  3554444333

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=95.67  E-value=2  Score=42.81  Aligned_cols=177  Identities=7%  Similarity=0.009  Sum_probs=120.8

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccc-cHHHHHHHHHHHHhCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL-GLKRGFEIFQQMITDK  185 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~l~~~M~~~g  185 (593)
                      ++.+-....+.+..++|+++++++....-. +...|+.-=.+....                | .+++++++++.+....
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l----------------~~~l~eEL~~~~~~L~~n  119 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSL----------------NKSLEDELRLMNEFAVQN  119 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT----------------TCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHh----------------hhhHHHHHHHHHHHHHhC
Confidence            444444455566678899999999987322 344555443333332                3 5999999999999877


Q ss_pred             CCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChh--------HHHHHHHHHHhCC
Q 007684          186 VDPNEATFTSVARLAVAK-E-DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD--------KAYEVDAHMGESG  255 (593)
Q Consensus       186 ~~p~~~ty~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--------~A~~l~~~m~~~g  255 (593)
                       +-+..+|+.--..+.+. + ++++++++++++.+..- -+-..|+.-.-.+.+.|..+        ++++.++++.+..
T Consensus       120 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d  197 (349)
T 3q7a_A          120 -LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD  197 (349)
T ss_dssp             -CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred             -CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence             56778888887777776 7 89999999999987432 23455555555555555555        8999999998766


Q ss_pred             CCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHccCCC-CHHHHHHHHHHH
Q 007684          256 VVPEEPELSALLKLSVDAKK-------VDKVYEILHRLRTLVRQV-SESTFKIIEDWF  305 (593)
Q Consensus       256 ~~p~~~t~~~Ll~~~~~~g~-------~~~a~~~l~~m~~~~~~~-~~~t~~~l~~~~  305 (593)
                      . -|...|+....++.+.+.       ++++++.++++..  ..| +.+.+.-+...+
T Consensus       198 p-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll  252 (349)
T 3q7a_A          198 G-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFL  252 (349)
T ss_dssp             T-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred             C-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence            4 377778888877777765       6788888888766  234 344444444333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=95.49  E-value=0.11  Score=39.69  Aligned_cols=81  Identities=11%  Similarity=0.048  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684          190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL  269 (593)
Q Consensus       190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~  269 (593)
                      ...+..+...+...|++++|...+++..+..- .+...+..+...|.+.|++++|.+.+++..+..- -+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence            45677777788888888888888888876431 2345677777888888888888888888765431 234445555554


Q ss_pred             HHh
Q 007684          270 SVD  272 (593)
Q Consensus       270 ~~~  272 (593)
                      +..
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.45  E-value=0.033  Score=57.75  Aligned_cols=84  Identities=8%  Similarity=-0.041  Sum_probs=57.2

Q ss_pred             ChHHHHHHHHHHHh---CCCCC---C-cccHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCCCHH-HHHHHHHHH
Q 007684          205 DPEMAFDLVKQMKS---FGIPP---K-LRSYGPALFGFCKLGNTDKAYEVDAHMGE-----SG-VVPEEP-ELSALLKLS  270 (593)
Q Consensus       205 ~~~~A~~l~~~m~~---~g~~p---~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~~~-t~~~Ll~~~  270 (593)
                      ++++|..++++..+   .-+.|   + ..+++.|..+|...|++++|+.++++..+     .| -.|+.. +|+.|...|
T Consensus       313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~  392 (433)
T 3qww_A          313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLY  392 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            46667777666542   22223   3 36788888888888888888888887763     22 224443 388888888


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 007684          271 VDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       271 ~~~g~~~~a~~~l~~m~~  288 (593)
                      ...|++++|..++++..+
T Consensus       393 ~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          393 MGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHH
Confidence            888888888888887654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.43  E-value=0.081  Score=54.80  Aligned_cols=85  Identities=8%  Similarity=-0.062  Sum_probs=66.7

Q ss_pred             cccHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCCC-cccHHHHHH
Q 007684          168 NLGLKRGFEIFQQMIT---DKVDPN----EATFTSVARLAVAKEDPEMAFDLVKQMKS-----FG-IPPK-LRSYGPALF  233 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~---~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~ty~~li~  233 (593)
                      .|++++|.+++++..+   .-+.|+    ..++++|..+|...|++++|..++++..+     .| -.|+ ..+|+.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            3678899999988654   222232    35899999999999999999999999853     22 2344 367999999


Q ss_pred             HHHhcCChhHHHHHHHHHH
Q 007684          234 GFCKLGNTDKAYEVDAHMG  252 (593)
Q Consensus       234 ~~~~~g~~~~A~~l~~~m~  252 (593)
                      .|...|++++|+.++++..
T Consensus       391 ~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHH
Confidence            9999999999999999875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.051  Score=43.42  Aligned_cols=76  Identities=11%  Similarity=0.082  Sum_probs=57.2

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHhcCCh
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-------RSYGPALFGFCKLGNT  241 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~ty~~li~~~~~~g~~  241 (593)
                      |++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+++..+.  .|+.       ..+..+..++...|+.
T Consensus        18 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~   94 (111)
T 2l6j_A           18 GLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQYRLELAQGAVGSV   94 (111)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHHHHHHHHHHHHHhH
Confidence            69999999999988765 557889999999999999999999999999873  4653       3344444455555555


Q ss_pred             hHHHHH
Q 007684          242 DKAYEV  247 (593)
Q Consensus       242 ~~A~~l  247 (593)
                      +.|.+.
T Consensus        95 ~~a~~~  100 (111)
T 2l6j_A           95 QIPVVE  100 (111)
T ss_dssp             CCCSSS
T ss_pred             hhhHhH
Confidence            444433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.29  E-value=0.074  Score=42.25  Aligned_cols=64  Identities=19%  Similarity=0.174  Sum_probs=49.2

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       188 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      -+...+..+...|...|++++|...|++..+..  |+ ...|..+..+|.+.|+.++|.+.|++..+
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            356677788888888888888888888887643  44 55777788888888888888888887653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.27  E-value=0.18  Score=52.18  Aligned_cols=104  Identities=14%  Similarity=0.049  Sum_probs=78.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhC---CCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHh-----CC-CCCCH-
Q 007684          195 SVARLAVAKEDPEMAFDLVKQMKSF---GIPPK----LRSYGPALFGFCKLGNTDKAYEVDAHMGE-----SG-VVPEE-  260 (593)
Q Consensus       195 ~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~~-  260 (593)
                      ..+..+.+.|++++|..++++..+.   -+.|+    ..+++.+...|...|++++|+.++++..+     .| -.|+. 
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            3355567789999999999998742   22233    36899999999999999999999998773     22 23444 


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH---ccCCCCHHHH
Q 007684          261 PELSALLKLSVDAKKVDKVYEILHRLRT---LVRQVSESTF  298 (593)
Q Consensus       261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~---~~~~~~~~t~  298 (593)
                      .+++.|...|...|++++|..++++..+   ....|+....
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~  412 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI  412 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence            4499999999999999999999998754   3345554433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=95.10  E-value=0.11  Score=42.20  Aligned_cols=79  Identities=8%  Similarity=-0.151  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007684          207 EMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR  285 (593)
Q Consensus       207 ~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~  285 (593)
                      +.|.+.+++..+..  |+ ...+..+...|...|++++|.+.|++.....- .+...|..+..+|...|+.++|...|++
T Consensus         2 ~~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            2 QAITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CCHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            35677788777633  44 67788899999999999999999999886542 3466788899999999999999999999


Q ss_pred             HHH
Q 007684          286 LRT  288 (593)
Q Consensus       286 m~~  288 (593)
                      ..+
T Consensus        79 al~   81 (115)
T 2kat_A           79 GLA   81 (115)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=94.85  E-value=0.66  Score=45.93  Aligned_cols=151  Identities=11%  Similarity=0.012  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684          120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARL  199 (593)
Q Consensus       120 ~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~  199 (593)
                      +++++.+++.+....- -+..+|+.---+....+              ...+++++++++.+.+.. +-|..+|+.-.-.
T Consensus        90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~--------------~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~v  153 (331)
T 3dss_A           90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLP--------------EPNWARELELCARFLEAD-ERNFHCWDYRRFV  153 (331)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCS--------------SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccC--------------cccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            6889999999887642 26677766554444431              014899999999999877 6788899888888


Q ss_pred             HHhcCC-hHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684          200 AVAKED-PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL--------------GNTDKAYEVDAHMGESGVVPEEPELS  264 (593)
Q Consensus       200 ~~~~g~-~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~p~~~t~~  264 (593)
                      +...|. ++++++.++++.+... -|...|+.....+.+.              +.++++++.+.+...... -|...|+
T Consensus       154 l~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~  231 (331)
T 3dss_A          154 AAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWF  231 (331)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred             HHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHH
Confidence            888888 5999999999998553 3456676666665554              457788888888876442 3556677


Q ss_pred             HHHHHHHhc-----------CCHHHHHHHHHHHHH
Q 007684          265 ALLKLSVDA-----------KKVDKVYEILHRLRT  288 (593)
Q Consensus       265 ~Ll~~~~~~-----------g~~~~a~~~l~~m~~  288 (593)
                      -+-..+.+.           +..+++.+.++++.+
T Consensus       232 Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle  266 (331)
T 3dss_A          232 YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE  266 (331)
T ss_dssp             HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence            665555554           356788888888876

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=94.56  E-value=0.067  Score=55.41  Aligned_cols=85  Identities=9%  Similarity=-0.094  Sum_probs=68.0

Q ss_pred             cccHHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CC-CCCC-cccHHHHHH
Q 007684          168 NLGLKRGFEIFQQMITDK---VDP----NEATFTSVARLAVAKEDPEMAFDLVKQMKS-----FG-IPPK-LRSYGPALF  233 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~g---~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g-~~p~-~~ty~~li~  233 (593)
                      .|++++|.+++++..+..   +.|    ...++++|..+|...|++++|..++++...     .| -.|+ ..+|+.|..
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~  379 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK  379 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence            368899999999887531   222    235899999999999999999999998853     22 2344 368999999


Q ss_pred             HHHhcCChhHHHHHHHHHH
Q 007684          234 GFCKLGNTDKAYEVDAHMG  252 (593)
Q Consensus       234 ~~~~~g~~~~A~~l~~~m~  252 (593)
                      .|...|++++|+.++++..
T Consensus       380 ~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          380 LQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHH
Confidence            9999999999999999876

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.40  E-value=0.43  Score=47.78  Aligned_cols=153  Identities=10%  Similarity=0.001  Sum_probs=100.7

Q ss_pred             CCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC--ChHHHH
Q 007684          136 TLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA---KE--DPEMAF  210 (593)
Q Consensus       136 ~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~---~g--~~~~A~  210 (593)
                      +.+...|...+.+.....          . .....+.+|.++|++..+.. +-....|..+.-+|..   .+  ..+...
T Consensus       191 p~~~~Aydl~Lra~~~l~----------~-~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~  258 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLL----------H-GDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLA  258 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHH----------H-CSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH----------c-CCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHH
Confidence            557788888876433210          0 00246789999999998764 3334455554444431   11  111111


Q ss_pred             ---HHHHHHHhC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          211 ---DLVKQMKSF-GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       211 ---~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                         +.++..... .-..+..+|..+...+...|++++|...+++....+  |+...|..+-..+.-.|+.++|.+.+.+.
T Consensus       259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~A  336 (372)
T 3ly7_A          259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTA  336 (372)
T ss_dssp             HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence               122211111 123456788887777778899999999999999876  88888888888999999999999999988


Q ss_pred             HHccCCCCHHHHHHHHHH
Q 007684          287 RTLVRQVSESTFKIIEDW  304 (593)
Q Consensus       287 ~~~~~~~~~~t~~~l~~~  304 (593)
                      ..  +.|...||....+.
T Consensus       337 lr--L~P~~~t~~~~~~l  352 (372)
T 3ly7_A          337 FN--LRPGANTLYWIENG  352 (372)
T ss_dssp             HH--HSCSHHHHHHHHHS
T ss_pred             Hh--cCCCcChHHHHhCc
Confidence            66  56888887655543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=94.38  E-value=0.29  Score=37.12  Aligned_cols=67  Identities=10%  Similarity=0.076  Sum_probs=52.8

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhc
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKL  238 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~  238 (593)
                      |++++|.+.|++..+.. +.+..++..+...+...|++++|...+++..+..  |+ ...+..+...+.+.
T Consensus        23 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           23 GDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhc
Confidence            59999999999988765 4577889999999999999999999999998743  44 44555555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=94.17  E-value=0.22  Score=39.41  Aligned_cols=81  Identities=11%  Similarity=-0.029  Sum_probs=62.4

Q ss_pred             cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-CCCCHHHHHHHHH
Q 007684          225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV-RQVSESTFKIIED  303 (593)
Q Consensus       225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~-~~~~~~t~~~l~~  303 (593)
                      ...+..+...|.+.|++++|.+.|++..+..- -+...|..+..+|...|++++|.+.+++..+.. ..++.....-+..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~   85 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD   85 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Confidence            46778889999999999999999999986542 245578899999999999999999999887632 2345555555555


Q ss_pred             HHh
Q 007684          304 WFD  306 (593)
Q Consensus       304 ~~~  306 (593)
                      .+.
T Consensus        86 ~l~   88 (100)
T 3ma5_A           86 AKL   88 (100)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.98  E-value=0.43  Score=41.21  Aligned_cols=91  Identities=16%  Similarity=0.022  Sum_probs=67.8

Q ss_pred             CCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCC-C--cccHHHHHH
Q 007684          160 NGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE---DPEMAFDLVKQMKSFGIPP-K--LRSYGPALF  233 (593)
Q Consensus       160 ~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p-~--~~ty~~li~  233 (593)
                      .+++.....+.+..+.+-|.+....| .++..+--.+.-+++++.   +.+++..++++..+.. .| +  ...|+ +--
T Consensus         3 ~~l~~~l~~~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~-LAv   79 (152)
T 1pc2_A            3 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFY-LAV   79 (152)
T ss_dssp             CCCSCSCCHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHH-HHH
T ss_pred             hHHhCcCCHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHH-HHH
Confidence            45666667788888899998888777 477777777888888888   6668999999887754 24 1  23454 566


Q ss_pred             HHHhcCChhHHHHHHHHHHh
Q 007684          234 GFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       234 ~~~~~g~~~~A~~l~~~m~~  253 (593)
                      +|.+.|++++|.+.++.+.+
T Consensus        80 ~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           80 GNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             HHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHh
Confidence            66888888888888888775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=93.90  E-value=2.8  Score=44.84  Aligned_cols=180  Identities=8%  Similarity=-0.040  Sum_probs=121.0

Q ss_pred             cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007684          116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS  195 (593)
Q Consensus       116 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~  195 (593)
                      +...-++|++.++++.+..-. +...|+.-=.+....+..      .........++++++.++++.+.. +-+..+|+.
T Consensus        41 ~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~------~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~h  112 (567)
T 1dce_A           41 AGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETE------KSPEESAALVKAELGFLESCLRVN-PKSYGTWHH  112 (567)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTT------SCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccc------cchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            334556889999999887322 344454432222222100      000000012899999999999877 568888998


Q ss_pred             HHHHHHhcC--ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684          196 VARLAVAKE--DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG-NTDKAYEVDAHMGESGVVPEEPELSALLKLSVD  272 (593)
Q Consensus       196 li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~  272 (593)
                      -.-++.+.+  +++++++.++++.+... -+-..|+.-...+.+.| ..+++.+.++++.+... -|...|+....++.+
T Consensus       113 R~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~  190 (567)
T 1dce_A          113 RCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHh
Confidence            888888999  77999999999998543 34567877777788888 88999999999987654 367778887777665


Q ss_pred             c--------------CCHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHhc
Q 007684          273 A--------------KKVDKVYEILHRLRTLVRQV-SESTFKIIEDWFDS  307 (593)
Q Consensus       273 ~--------------g~~~~a~~~l~~m~~~~~~~-~~~t~~~l~~~~~~  307 (593)
                      .              +.++++++.+++....  .| +++.+.-+-..+..
T Consensus       191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~  238 (567)
T 1dce_A          191 LHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGR  238 (567)
T ss_dssp             HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSC
T ss_pred             hcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhc
Confidence            3              5578899888888763  34 34444444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=93.80  E-value=0.55  Score=46.52  Aligned_cols=180  Identities=12%  Similarity=0.035  Sum_probs=122.3

Q ss_pred             cccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCC
Q 007684           79 VNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRG--DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE  156 (593)
Q Consensus        79 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~  156 (593)
                      ++++...+..++       ...+....+|+.-.-.+.+.+  ++++++.+++.+.+...+ |.+.|+----+....    
T Consensus        90 l~~EL~~~~~~L-------~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l----  157 (331)
T 3dss_A           90 VKAELGFLESCL-------RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQA----  157 (331)
T ss_dssp             HHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT----
T ss_pred             HHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh----
Confidence            345555665554       444556667766666666666  589999999999987533 777777665555554    


Q ss_pred             CCCCCCCccccccc-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhCCC
Q 007684          157 SSENGDRENDSNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAK--------------EDPEMAFDLVKQMKSFGI  221 (593)
Q Consensus       157 ~~~~~~~~~~~~g~-~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~  221 (593)
                                  |. .+++++.++++.+.. +-|..+|+.....+.+.              +.++++++.+++....  
T Consensus       158 ------------~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--  222 (331)
T 3dss_A          158 ------------AVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--  222 (331)
T ss_dssp             ------------TCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--
T ss_pred             ------------CcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--
Confidence                        34 689999999999877 66888888877776665              4578899999988873  


Q ss_pred             CCC-cccHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHH
Q 007684          222 PPK-LRSYGPALFGFCKL-----------GNTDKAYEVDAHMGESGVVPEEPELSALL-----KLSVDAKKVDKVYEILH  284 (593)
Q Consensus       222 ~p~-~~ty~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll-----~~~~~~g~~~~a~~~l~  284 (593)
                      .|+ ...|+-+-..+.+.           +.++++.+.++++.+..  ||. .|+.+-     .+....|..+++...+.
T Consensus       223 ~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~  299 (331)
T 3dss_A          223 DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYFS  299 (331)
T ss_dssp             STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            355 45566444444444           45788999999988543  553 333221     22224567778888888


Q ss_pred             HHHH
Q 007684          285 RLRT  288 (593)
Q Consensus       285 ~m~~  288 (593)
                      ++.+
T Consensus       300 ~l~~  303 (331)
T 3dss_A          300 TLKA  303 (331)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.75  E-value=0.64  Score=51.86  Aligned_cols=97  Identities=7%  Similarity=0.116  Sum_probs=67.5

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|+++.+.+      .+...|..+...+.+.++++.|.+.|.++..         |..+...|...|+.++..++-
T Consensus       666 ~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~  730 (814)
T 3mkq_A          666 GQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA  730 (814)
T ss_dssp             TCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence            5888888886543      4778999999999999999999999998864         344666666677776666655


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      +.....|.      ++.-..+|.+.|++++|.+++.++
T Consensus       731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence            55544432      344444555566677776666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=93.47  E-value=0.63  Score=49.97  Aligned_cols=174  Identities=9%  Similarity=0.018  Sum_probs=120.4

Q ss_pred             cCCCcc-cCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHCCCCCCHHHHH
Q 007684           75 KKSTVN-ESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD----------VFEALRLYDDARSNGITLSQHHYN  143 (593)
Q Consensus        75 ~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~ty~  143 (593)
                      +.|..+ +|...+..++       ...+....+|+.--..+.+.|+          +++|++.++.+.+..-+ +..+|+
T Consensus        40 ~~~~~~eeal~~~~~~l-------~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~  111 (567)
T 1dce_A           40 QAGELDESVLELTSQIL-------GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWH  111 (567)
T ss_dssp             HTTCCSHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             HcCCCCHHHHHHHHHHH-------HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHH
Confidence            344443 4566665555       4445555666665555555555          99999999999877432 566666


Q ss_pred             HHHHHHHccCCCCCCCCCCCcccccc--cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCC
Q 007684          144 VLLYVCSCKCGSESSENGDRENDSNL--GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE-DPEMAFDLVKQMKSFG  220 (593)
Q Consensus       144 ~ll~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~m~~~g  220 (593)
                      .---+..+.                |  +++++++.++++.+.. +-|..+|+.-.-++.+.| .++++++.++++.+..
T Consensus       112 hR~w~l~~l----------------~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~  174 (567)
T 1dce_A          112 HRCWLLSRL----------------PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN  174 (567)
T ss_dssp             HHHHHHHTC----------------SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHc----------------ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence            554455543                4  6799999999999887 668899999888888889 8999999999998754


Q ss_pred             CCCCcccHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007684          221 IPPKLRSYGPALFGFCKL--------------GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK  275 (593)
Q Consensus       221 ~~p~~~ty~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~  275 (593)
                      . -+...|+.....+.+.              +.+++|.+.+.+.....- -|...|..+-..+.+.++
T Consensus       175 p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          175 F-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             C-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCC
T ss_pred             C-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCC
Confidence            3 3456777777776663              456888888888775431 245567776666666555

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.25  E-value=4.1  Score=42.66  Aligned_cols=33  Identities=12%  Similarity=-0.044  Sum_probs=26.6

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 007684          101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN  133 (593)
Q Consensus       101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  133 (593)
                      +..+..|-..+.-+.+.|+++.|..+|++....
T Consensus       210 p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          210 YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            444566666677778899999999999999887

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.12  E-value=1.6  Score=38.68  Aligned_cols=98  Identities=11%  Similarity=0.134  Sum_probs=77.3

Q ss_pred             cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 007684          168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      .|+++.|.++-+++      -+...|..|...+...|+++.|.+.|.+.+.         |..+.--|.-.|+.++-..+
T Consensus        18 lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           18 YGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             TTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence            57999999998876      3789999999999999999999999987654         55677778888888887766


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      -+.....|-      ++.-+..+.-.|+++++.++|.+.
T Consensus        83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            665554442      566666677788888888887554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=92.45  E-value=1.9  Score=43.04  Aligned_cols=151  Identities=9%  Similarity=-0.025  Sum_probs=94.4

Q ss_pred             CCCCHHHHHHHHHHHH--cC---CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCCCCCCCCCCcccccccHHH
Q 007684          100 RESPEGVLRHKLDMCS--KR---GDVFEALRLYDDARSNGITLSQ-HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR  173 (593)
Q Consensus       100 ~~~~~~~~~~li~~~~--~~---g~~~~A~~l~~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~  173 (593)
                      .+.+...|...+.+..  ..   .+..+|..+|++..+.  .|+- ..|..+--+|......    .   . ........
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~----~---~-~~~~~~~~  259 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQ----H---P-LDEKQLAA  259 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH----S---C-CCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhcc----C---C-CchhhHHH
Confidence            3444555666665533  22   3468899999999987  5652 3333222222110000    0   0 00011111


Q ss_pred             HHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684          174 GFEIFQQMIT-DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG  252 (593)
Q Consensus       174 a~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~  252 (593)
                      ...-++.... ..-+.+..+|.++...+...|++++|...+++....+  |+...|..+-..+.-.|+.++|.+.|++..
T Consensus       260 l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            1112222111 2226688889888888888899999999999999865  787777777888899999999999999887


Q ss_pred             hCCCCCCHHHHH
Q 007684          253 ESGVVPEEPELS  264 (593)
Q Consensus       253 ~~g~~p~~~t~~  264 (593)
                      ..  .|...||.
T Consensus       338 rL--~P~~~t~~  347 (372)
T 3ly7_A          338 NL--RPGANTLY  347 (372)
T ss_dssp             HH--SCSHHHHH
T ss_pred             hc--CCCcChHH
Confidence            54  47777754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=92.45  E-value=0.3  Score=38.00  Aligned_cols=56  Identities=20%  Similarity=0.136  Sum_probs=34.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCC-cc-cHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          197 ARLAVAKEDPEMAFDLVKQMKSFGIPPK-LR-SYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       197 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      ...+...|++++|.+.+++..+..  |+ .. .|..+..+|.+.|+.++|.+.|++..+.
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            344556666777777776665532  33 34 5555666666666777776666666543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=92.37  E-value=0.36  Score=42.09  Aligned_cols=109  Identities=8%  Similarity=-0.013  Sum_probs=73.4

Q ss_pred             cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007684          116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS  195 (593)
Q Consensus       116 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~  195 (593)
                      +.+.+++|...++...+.. +-+...|+.+=.++...+..+      .+....+.+++|+..|++..+.. +-+..+|..
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~------~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~   85 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFH------SISDAKQMIQEAITKFEEALLID-PKKDEAVWC   85 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccc------hhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence            3356889999999888763 225566655544444431000      00000123679999999998876 457779999


Q ss_pred             HHHHHHhcC-----------ChHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 007684          196 VARLAVAKE-----------DPEMAFDLVKQMKSFGIPPKLRSYGPALFG  234 (593)
Q Consensus       196 li~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~ty~~li~~  234 (593)
                      +-.+|...|           ++++|.+.|++..+  +.|+...|...+..
T Consensus        86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~  133 (158)
T 1zu2_A           86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            999998874           89999999999988  55887766655543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=91.22  E-value=6  Score=33.23  Aligned_cols=120  Identities=13%  Similarity=0.085  Sum_probs=88.4

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCC----------------CCCcccHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGI----------------PPKLRSYGPA  231 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~----------------~p~~~ty~~l  231 (593)
                      |..+++.++..+.....   +..-||-+|--....-+-+-.+++++.+-+ ..+                .-+..-.+..
T Consensus        21 G~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~A   97 (172)
T 1wy6_A           21 GYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKA   97 (172)
T ss_dssp             TCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHH
T ss_pred             hhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHH
Confidence            68889999999887643   555677777666677777777777777643 111                1233455667


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC
Q 007684          232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ  292 (593)
Q Consensus       232 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~  292 (593)
                      ++.+..+|.-|.-.+++.++.. +-+|+....-.+..+|.+-|+..++.+++.+.-+.|..
T Consensus        98 Ld~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           98 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            7788888888888888888643 55677888889999999999999999999999887763

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=90.20  E-value=2.3  Score=40.88  Aligned_cols=106  Identities=10%  Similarity=0.010  Sum_probs=81.4

Q ss_pred             ccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhc
Q 007684          169 LGLKRGFEIFQQMITDKVDPN---EATFTSVARLAVAK-----EDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKL  238 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~---~~ty~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~  238 (593)
                      +....|..++++..+..  |+   -..|+.+...|...     |+.++|.+.|++..+  +.|+  ..++......+|+.
T Consensus       177 ~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~  252 (301)
T 3u64_A          177 DTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIP  252 (301)
T ss_dssp             HHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTT
T ss_pred             HhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHh
Confidence            56778888888877654  55   56899999999995     999999999999988  4463  67777788888885


Q ss_pred             -CChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          239 -GNTDKAYEVDAHMGESGVV--PEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       239 -g~~~~A~~l~~~m~~~g~~--p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                       |+.++|.+.+++.......  |+....+.+-        -++|..++.++
T Consensus       253 ~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~--------q~eA~~LL~~~  295 (301)
T 3u64_A          253 LNNRAGFDEALDRALAIDPESVPHNKLLVILS--------QKRARWLKAHV  295 (301)
T ss_dssp             TTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH--------HHHHHHHHHTH
T ss_pred             cCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH--------HHHHHHHHHHh
Confidence             9999999999999987766  7755444332        34555555544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.02  E-value=1.8  Score=33.69  Aligned_cols=67  Identities=9%  Similarity=-0.066  Sum_probs=46.4

Q ss_pred             CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684          187 DPNEATFTSVARLAVAKED---PEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG  255 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g  255 (593)
                      +.|...+..+..++...++   .++|..++++..+.  .|+ .+....+-..+.+.|++++|.+.|+++.+..
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            4566666777776654444   57888888887763  355 4566666777778888888888888887543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=89.00  E-value=1.4  Score=33.92  Aligned_cols=51  Identities=4%  Similarity=0.087  Sum_probs=44.7

Q ss_pred             cccHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007684          168 NLGLKRGFEIFQQMITDKVDPNEA-TFTSVARLAVAKEDPEMAFDLVKQMKSF  219 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~  219 (593)
                      .|++++|.+.|++..+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus        13 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A           13 QGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            369999999999998765 44667 8999999999999999999999999874

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=88.48  E-value=3.1  Score=43.62  Aligned_cols=111  Identities=8%  Similarity=0.099  Sum_probs=80.1

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChhHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK-EDPEMAFDLVKQMKSFGIPPKL-RSYGPALFGFCKLGNTDKAYE  246 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~  246 (593)
                      |..+.|..+|+.. ... ..+...|...+..-... ++.+.|..+|+...+.-  |+. ..+...+....+.|+.+.|..
T Consensus       300 ~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~  375 (493)
T 2uy1_A          300 RGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARA  375 (493)
T ss_dssp             HCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            4799999999988 321 23444554333222223 36999999999987632  442 334556676778999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       247 l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +|+...     .....|...+..-...|+.+.+..++++..+
T Consensus       376 l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          376 LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999973     2567788888888889999999999988875

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=87.87  E-value=2.8  Score=36.06  Aligned_cols=89  Identities=11%  Similarity=0.240  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 007684          119 DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP--NEATFTSV  196 (593)
Q Consensus       119 ~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~~l  196 (593)
                      .+..+.+-|.+..+.|.......|+.-+.++....              .++.++++.+|++..+.. .|  ....+-.|
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~--------------~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~L   77 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY--------------NDDIRKGIVLLEELLPKG-SKEEQRDYVFYL   77 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS--------------HHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC--------------HHHHHHHHHHHHHHHhcC-CccchHHHHHHH
Confidence            35667777777777665434455555455444321              247889999999988765 34  34456667


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684          197 ARLAVAKEDPEMAFDLVKQMKSFGIPPK  224 (593)
Q Consensus       197 i~~~~~~g~~~~A~~l~~~m~~~g~~p~  224 (593)
                      .-+|.+.|++++|.+.++.+.+  +.|+
T Consensus        78 Av~~~kl~~Y~~A~~y~~~lL~--ieP~  103 (152)
T 1pc2_A           78 AVGNYRLKEYEKALKYVRGLLQ--TEPQ  103 (152)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred             HHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence            7788999999999999999988  4575

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=86.93  E-value=2.8  Score=33.15  Aligned_cols=66  Identities=14%  Similarity=0.043  Sum_probs=40.6

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684          188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG------IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       188 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      .+..-+-.|...+.+.++++.|...+++..+.-      -.+....|..+..+|.+.|+.++|...+++...
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            344455566777777777777777777665420      113345566666666677777777776666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.75  E-value=7.9  Score=42.81  Aligned_cols=102  Identities=18%  Similarity=0.198  Sum_probs=73.3

Q ss_pred             HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHH
Q 007684          113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT  192 (593)
Q Consensus       113 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t  192 (593)
                      .+.+.|++++|+++.+.+      .+...|..|-..|.+.                |+++.|.+.|.++..         
T Consensus       661 ~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~----------------~~~~~A~~~y~~~~d---------  709 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR----------------FNFKLAIEAFTNAHD---------  709 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHTC---------
T ss_pred             hhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc----------------CCHHHHHHHHHHccC---------
Confidence            345567788877775543      3668888888888886                599999999998863         


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684          193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       193 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m  251 (593)
                      |..+...+...|+.+...++-+.....|      -++....+|.+.|++++|.+++.++
T Consensus       710 ~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          710 LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4466666777888887776666555543      3566666777788888887777665

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=85.10  E-value=16  Score=30.70  Aligned_cols=141  Identities=10%  Similarity=0.033  Sum_probs=96.4

Q ss_pred             HHHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-------CCCCCCCCCcccccccHHHHHHH
Q 007684          107 LRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG-------SESSENGDRENDSNLGLKRGFEI  177 (593)
Q Consensus       107 ~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~-------~~~~~~~~~~~~~~g~~~~a~~l  177 (593)
                      ...||.+  ..-.|.+++..+++.+..+..   +..-||-.|.--...-.       .+..+.+. ...++|++.+..+.
T Consensus         8 ~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF-Dis~C~NlKrVi~C   83 (172)
T 1wy6_A            8 IRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYF-DLDKCQNLKSVVEC   83 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS-CGGGCSCTHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhc-CcHhhhcHHHHHHH
Confidence            4556666  556799999999999877542   44555555442222100       00000111 12456788888887


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684          178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV  257 (593)
Q Consensus       178 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~  257 (593)
                      |-.+-     -+..-+...+......|+-|+-.+++.++.. +..|+....-.+..||.+.|+..+|.+++.+.-+.|++
T Consensus        84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            76654     2334577788899999999999999999644 34577777777899999999999999999999988874

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=84.44  E-value=21  Score=31.44  Aligned_cols=130  Identities=13%  Similarity=0.110  Sum_probs=93.7

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCH
Q 007684          111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE  190 (593)
Q Consensus       111 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~  190 (593)
                      .....+.|+++.|.++-+++      -+...|..|-..+...                |+++-|.+.|.....       
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~----------------gn~~lAe~cy~~~~D-------   62 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQ----------------GNASLAEMIYQTQHS-------   62 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHTTC-------
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHc----------------CChHHHHHHHHHhCC-------
Confidence            34566889999999998876      2678999998877765                599999999988773       


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS  270 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~  270 (593)
                        |..+.-.|.-.|+.+...++-+.....|      -++.....+...|+++++.++|.+.   |--|...      -..
T Consensus        63 --~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A  125 (177)
T 3mkq_B           63 --FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVA  125 (177)
T ss_dssp             --HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHH
T ss_pred             --HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHH
Confidence              4456666777888887776665555443      5777888888999999999999765   3222111      112


Q ss_pred             HhcCCHHHHHHHHHHH
Q 007684          271 VDAKKVDKVYEILHRL  286 (593)
Q Consensus       271 ~~~g~~~~a~~~l~~m  286 (593)
                      ...|..+.|.++++.+
T Consensus       126 ~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B          126 KANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHTTCHHHHHHHHHHT
T ss_pred             HHcCcHHHHHHHHHHh
Confidence            2357777777776665

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=83.46  E-value=5.8  Score=38.13  Aligned_cols=94  Identities=11%  Similarity=0.033  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 007684          206 PEMAFDLVKQMKSFGIPPK---LRSYGPALFGFCKL-----GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA-KKV  276 (593)
Q Consensus       206 ~~~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~-g~~  276 (593)
                      ...|..++++..+  +-|+   -..|..+...|.+.     |+.++|.+.|++..+.+-.-+..++....+.++.. |+.
T Consensus       179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            3566677777666  4466   45899999999995     99999999999998754222467777888888884 999


Q ss_pred             HHHHHHHHHHHHccCC--CCHHHHHHH
Q 007684          277 DKVYEILHRLRTLVRQ--VSESTFKII  301 (593)
Q Consensus       277 ~~a~~~l~~m~~~~~~--~~~~t~~~l  301 (593)
                      +.+.+.+++..+....  |+....+.+
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            9999999999987666  665444433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=82.29  E-value=8  Score=30.38  Aligned_cols=70  Identities=7%  Similarity=-0.152  Sum_probs=54.3

Q ss_pred             ccHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHH
Q 007684          226 RSYGPALFGFCKLGNTDKAYEVDAHMGESG------VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST  297 (593)
Q Consensus       226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t  297 (593)
                      .-+-.|...+.+.|+++.|...|+.....-      -.+....+..|..++.+.|+.++|..++++..+  ..|+...
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~~   81 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQR   81 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHH
Confidence            334457888899999999999999876421      124566789999999999999999999999976  4455433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	593
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.14
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.06
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.82
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.69
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.2
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.12
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.1
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.03
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.87
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.84
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.71
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.69
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.65
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.65
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.39
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.37
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.31
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.31
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.26
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.22
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.16
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.15
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.13
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.07
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.84
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.72
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.59
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.47
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.39
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.28
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	96.24
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.23
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	96.21
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	95.71
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.68
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	95.44
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.32
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.19
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	94.8
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	94.79
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	94.62
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	94.45
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	93.54
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	93.27
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	93.26
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	92.65
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	91.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	89.4
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	88.81
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	87.96
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	86.39
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	86.34
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	81.08

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.8e-09  Score=105.17  Aligned_cols=278  Identities=11%  Similarity=0.017  Sum_probs=181.0

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL  146 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll  146 (593)
                      ..+...|.+.|++++|...+.+.+       ...+.....+..+...|.+.|++++|+..+..+.+.... +........
T Consensus        37 ~~la~~~~~~~~~~~A~~~~~~al-------~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~  108 (388)
T d1w3ba_          37 LLLSSIHFQCRRLDRSAHFSTLAI-------KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLA  108 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHhhhhccccccccccccccccccc-ccccccccc
Confidence            777788999999999999997666       334455677899999999999999999999998876432 222222222


Q ss_pred             HHHHccCCCCCCC-----------C-----------------------------------------CCCcccccccHHHH
Q 007684          147 YVCSCKCGSESSE-----------N-----------------------------------------GDRENDSNLGLKRG  174 (593)
Q Consensus       147 ~~~~~~~~~~~~~-----------~-----------------------------------------~~~~~~~~g~~~~a  174 (593)
                      .............           .                                         ....+...|..++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  188 (388)
T d1w3ba_         109 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA  188 (388)
T ss_dssp             HHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHH
Confidence            2111111100000           0                                         00112234677777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       175 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      ...+++..+.. +-+..++..+...+...|++++|...+++...... .+...+..+...+.+.|++++|.+.|++..+.
T Consensus       189 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  266 (388)
T d1w3ba_         189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL  266 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            77777776654 34556777777788888888888888887766432 33456666777777888888888888877653


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcc
Q 007684          255 GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGW  334 (593)
Q Consensus       255 g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~  334 (593)
                      .- -+...+..+..++...|+.++|.+.++..... ...+...+..+...+...+.                        
T Consensus       267 ~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~------------------------  320 (388)
T d1w3ba_         267 QP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGN------------------------  320 (388)
T ss_dssp             CS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTC------------------------
T ss_pred             CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCC------------------------
Confidence            31 23455777777788888888888887776553 22233344444444432221                        


Q ss_pred             cccccccCCceEEEEecccCCCCcCccccccc----ccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684          335 HGQGWLGSGKWRVERTQIDENGVCCSCNERLV----CIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG  406 (593)
Q Consensus       335 ~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~----~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~  406 (593)
                                                .++|++    ++.+.|.+...+..+...|...|+.++|.+.|++.++..+
T Consensus       321 --------------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P  370 (388)
T d1w3ba_         321 --------------------------IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             --------------------------HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             --------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                                      122222    2335677778888888999999999999999999987543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.2e-09  Score=105.69  Aligned_cols=263  Identities=10%  Similarity=0.036  Sum_probs=179.4

Q ss_pred             HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007684           70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC  149 (593)
Q Consensus        70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~  149 (593)
                      ...+.+.|++++|...+.+.+       ...+.....+..+...|.+.|++++|+.+|+++.+.. +-+..+|..+-.+|
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l-------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~   77 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLW-------RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVY   77 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHh
Confidence            445778899999999997776       3345567778899999999999999999999988763 22456777777777


Q ss_pred             HccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC-------------------------------------------
Q 007684          150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV-------------------------------------------  186 (593)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~-------------------------------------------  186 (593)
                      ...                |++++|.+.+........                                           
T Consensus        78 ~~~----------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (388)
T d1w3ba_          78 KER----------------GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL  141 (388)
T ss_dssp             HHH----------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             hhh----------------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            775                477777777766554321                                           


Q ss_pred             ------------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCh
Q 007684          187 ------------------------DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNT  241 (593)
Q Consensus       187 ------------------------~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~  241 (593)
                                              +-+..++..+...+...|+.++|...+++..+.  .|+ ...|..+...+...|++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~  219 (388)
T d1w3ba_         142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIF  219 (388)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCT
T ss_pred             cccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccH
Confidence                                    113345556666677788888888888887763  354 45677788888888888


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHhcchhhhhccccchh
Q 007684          242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS-ESTFKIIEDWFDSVDAAEIGVLNWDV  320 (593)
Q Consensus       242 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~-~~t~~~l~~~~~~~~~~~~~~~~~d~  320 (593)
                      ++|.+.+++....+. .+...+..+..++.+.|+.++|...|++..+.  .|+ ...+..+...+...+....+      
T Consensus       220 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A------  290 (388)
T d1w3ba_         220 DRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEA------  290 (388)
T ss_dssp             THHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHH------
T ss_pred             HHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH------
Confidence            888888888776443 34556777788888888888888888887663  232 33444444444332211111      


Q ss_pred             hhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 007684          321 SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQE  400 (593)
Q Consensus       321 ~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~  400 (593)
                      ....+.                                        .+...|.+...+..+...+...|+.++|++.|++
T Consensus       291 ~~~~~~----------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  330 (388)
T d1w3ba_         291 EDCYNT----------------------------------------ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK  330 (388)
T ss_dssp             HHHHHH----------------------------------------HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHh----------------------------------------hhccCCccchhhhHHHHHHHHCCCHHHHHHHHHH
Confidence            011000                                        0112344556677777888999999999999999


Q ss_pred             HHHhcCC
Q 007684          401 WLGRHGP  407 (593)
Q Consensus       401 ~l~~~~~  407 (593)
                      .++..+.
T Consensus       331 al~~~p~  337 (388)
T d1w3ba_         331 ALEVFPE  337 (388)
T ss_dssp             HTTSCTT
T ss_pred             HHHhCCC
Confidence            8876543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=7.2e-08  Score=94.12  Aligned_cols=194  Identities=7%  Similarity=-0.088  Sum_probs=142.4

Q ss_pred             HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007684           70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC  149 (593)
Q Consensus        70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~  149 (593)
                      -..+.+.|++++|...|...+       ...+.....|..+...|...|++++|...|++..+..- -+...|..+...|
T Consensus        26 g~~~~~~g~~~~A~~~~~~al-------~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~   97 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAV-------QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSF   97 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-------HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccc
Confidence            345789999999999997776       44555677799999999999999999999999887631 2455666666677


Q ss_pred             HccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC--------------CCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684          150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD--------------PNEATFTSVARLAVAKEDPEMAFDLVKQ  215 (593)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~--------------p~~~ty~~li~~~~~~g~~~~A~~l~~~  215 (593)
                      ...                |++++|.+.+++.......              .+.......+..+...+..++|.+.+.+
T Consensus        98 ~~~----------------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_          98 TNE----------------SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             HHT----------------TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             ccc----------------ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            765                5999999999998764311              0111112223344455677888888888


Q ss_pred             HHhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          216 MKSFG-IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       216 m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ..+.. -.++...+..+...+...|++++|...|++.....- -+...|..+..+|...|+.++|.+.+++..+
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  234 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALE  234 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHH
Confidence            76532 123345677788889999999999999999875431 2456688899999999999999999988765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.3e-07  Score=92.12  Aligned_cols=226  Identities=9%  Similarity=-0.077  Sum_probs=161.5

Q ss_pred             CCChhhHHhhcCCccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 007684           48 FTKPITDIKQNRFSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALR  125 (593)
Q Consensus        48 ~~~~~~~m~~~g~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  125 (593)
                      +...++...+.  .|+...  ..+..+|...|++++|...+.+.+       ...+.....+..+...|...|++++|.+
T Consensus        38 A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~~~~~~A~~  108 (323)
T d1fcha_          38 AVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCL-------ELKPDNQTALMALAVSFTNESLQRQACE  108 (323)
T ss_dssp             HHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh-------cccccccccccccccccccccccccccc
Confidence            55556555544  354443  778889999999999999996665       3334556778889999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC
Q 007684          126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK-VDPNEATFTSVARLAVAKE  204 (593)
Q Consensus       126 l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g  204 (593)
                      .++++...  .|+............................+.+...+|.+.|.+..+.. -..+..++..+...+...|
T Consensus       109 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  186 (323)
T d1fcha_         109 ILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG  186 (323)
T ss_dssp             HHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred             chhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence            99998865  33221111110000000000011111122233467888999998876543 2456778889999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 007684          205 DPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEI  282 (593)
Q Consensus       205 ~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~  282 (593)
                      ++++|...+++.....  |+ ...|..+...|.+.|++++|.+.|++..+..  | +...|..+..+|.+.|++++|.+.
T Consensus       187 ~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~  262 (323)
T d1fcha_         187 EYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEH  262 (323)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHh--hccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            9999999999987743  55 5678889999999999999999999988643  4 455688999999999999999999


Q ss_pred             HHHHHH
Q 007684          283 LHRLRT  288 (593)
Q Consensus       283 l~~m~~  288 (593)
                      |++..+
T Consensus       263 ~~~al~  268 (323)
T d1fcha_         263 FLEALN  268 (323)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998866

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=7.7e-05  Score=71.74  Aligned_cols=169  Identities=13%  Similarity=0.077  Sum_probs=132.0

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684          102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM  181 (593)
Q Consensus       102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M  181 (593)
                      .....+...+....+.|+++.|..+|+.+.+.........|...+..+.+.                |..++|.++|+.+
T Consensus        97 ~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~----------------~~~~~ar~i~~~a  160 (308)
T d2onda1          97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA----------------EGIKSGRMIFKKA  160 (308)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH----------------HCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc----------------CChHHHHHHHHHH
Confidence            344567888888999999999999999998764333355788888887775                5899999999999


Q ss_pred             HhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCC
Q 007684          182 ITDKVDPNEATFTSVARL-AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG-VVPE  259 (593)
Q Consensus       182 ~~~g~~p~~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~  259 (593)
                      .+.+ +.+...|-..+.. +...|+.+.|..+|+.+.+. .+-+...|...+..+.+.|+.+.|..+|++..... ..|+
T Consensus       161 l~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         161 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            8876 3344444444433 34568999999999999874 22335678888999999999999999999987643 4544


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          260 --EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       260 --~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                        ...|...+..-...|+.+.+..+++++.+
T Consensus       239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         239 KSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              45689999988899999999999999876

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=0.0002  Score=68.68  Aligned_cols=154  Identities=10%  Similarity=0.032  Sum_probs=115.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684          118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVA  197 (593)
Q Consensus       118 g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li  197 (593)
                      +..++|..+|++..+...+-+...|..........                |+.++|..+|+.+.+.........|...+
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~----------------~~~~~a~~i~~~~l~~~~~~~~~~w~~~~  141 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESR----------------MKYEKVHSIYNRLLAIEDIDPTLVYIQYM  141 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHTSSSSCTHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc----------------ccHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            34678889999888765455566666666666664                58999999999998765333455788999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007684          198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG-FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV  276 (593)
Q Consensus       198 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~  276 (593)
                      ..+.+.|+.+.|.++|+++.+.+- .+...|-..... +...|+.+.|..+|+.+... ..-+...|...++.+.+.|+.
T Consensus       142 ~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~  219 (308)
T d2onda1         142 KFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNED  219 (308)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCCh
Confidence            999999999999999999887442 223344333332 34468999999999998864 233567799999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 007684          277 DKVYEILHRLRTL  289 (593)
Q Consensus       277 ~~a~~~l~~m~~~  289 (593)
                      ++|..+|++..+.
T Consensus       220 ~~aR~~fe~ai~~  232 (308)
T d2onda1         220 NNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998663

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.8e-05  Score=74.37  Aligned_cols=210  Identities=9%  Similarity=0.051  Sum_probs=150.3

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRG-DVFEALRLYDDARSNGITLSQHHYNVL  145 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~ty~~l  145 (593)
                      +.+-..+.+.+..++|...+...+       .-.+.....|+.....+.+.| ++++|+..++...+..- -+..+|+.+
T Consensus        47 ~~~~~~~~~~e~~~~Al~~~~~ai-------~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~  118 (315)
T d2h6fa1          47 DYFRAVLQRDERSERAFKLTRDAI-------ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHR  118 (315)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHH-------HHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHH
Confidence            555667788889999999887776       455666677888888888865 59999999999877632 256677766


Q ss_pred             HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-
Q 007684          146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-  224 (593)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-  224 (593)
                      -.++...                |+.++|++.|+++.+.. +-+..+|+.+...+.+.|++++|.+.++++.+..  |+ 
T Consensus       119 ~~~~~~l----------------~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~n  179 (315)
T d2h6fa1         119 RVLVEWL----------------RDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRN  179 (315)
T ss_dssp             HHHHHHH----------------TCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTC
T ss_pred             hHHHHhh----------------ccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--Ccc
Confidence            6666665                58899999999998866 5678899999999999999999999999998844  44 


Q ss_pred             cccHHHHHHHHHhcCC------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC-CHHH
Q 007684          225 LRSYGPALFGFCKLGN------TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV-SEST  297 (593)
Q Consensus       225 ~~ty~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~-~~~t  297 (593)
                      ...|+.+...+.+.+.      .++|.+.+....+..- -+...|..+...+... ..+++.+.++...+....+ +...
T Consensus       180 ~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~  257 (315)
T d2h6fa1         180 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYL  257 (315)
T ss_dssp             HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHH
T ss_pred             HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHH
Confidence            5667777666666655      5678888887765431 2556677776655444 4567777777776533332 3334


Q ss_pred             HHHHHHHH
Q 007684          298 FKIIEDWF  305 (593)
Q Consensus       298 ~~~l~~~~  305 (593)
                      +..+...|
T Consensus       258 ~~~l~~~y  265 (315)
T d2h6fa1         258 IAFLVDIY  265 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44555544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=0.00013  Score=67.52  Aligned_cols=116  Identities=7%  Similarity=-0.066  Sum_probs=83.0

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      |++++|++.|++..+.. +-+..+|+.+..++.+.|++++|.+.|++..+.  .|+ ..++..+..+|...|+.++|.+.
T Consensus        51 g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~  127 (259)
T d1xnfa_          51 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDD  127 (259)
T ss_dssp             TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHH
Confidence            68999999999888765 556778889999999999999999999998873  355 45777788888899999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      |+...+... .+......+..++.+.+..+.+..+......
T Consensus       128 ~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_         128 LLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            988876432 2333333333444455555555555454444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=0.00031  Score=67.63  Aligned_cols=162  Identities=9%  Similarity=0.064  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      .|+.+-..+.+.+..++|+.+++++.+.  .|+ ...|+..-.++...+               +++++|++.++...+.
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~---------------~~~~eal~~~~~al~~  107 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQ---------------KDLHEEMNYITAIIEE  107 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT---------------CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhC---------------cCHHHHHHHHHHHHHH
Confidence            4788888899999999999999999987  444 445565555555532               3689999999998877


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPEL  263 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  263 (593)
                      . +-+..+|+.+...+.+.|++++|++.++++.+.  .|+ ...|..+...+.+.|+.++|.+.++++.+.+. -+...|
T Consensus       108 ~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~  183 (315)
T d2h6fa1         108 Q-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVW  183 (315)
T ss_dssp             C-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHH
T ss_pred             H-HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHH
Confidence            6 567889999999999999999999999999884  355 67899999999999999999999999987553 255668


Q ss_pred             HHHHHHHHhcCC------HHHHHHHHHHHHH
Q 007684          264 SALLKLSVDAKK------VDKVYEILHRLRT  288 (593)
Q Consensus       264 ~~Ll~~~~~~g~------~~~a~~~l~~m~~  288 (593)
                      +.+..++.+.+.      .++|.+.+.+..+
T Consensus       184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~  214 (315)
T d2h6fa1         184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIK  214 (315)
T ss_dssp             HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccccchhhhhHHhHHHHHHHHH
Confidence            777766666554      5788888887766

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=0.0018  Score=59.34  Aligned_cols=162  Identities=11%  Similarity=-0.005  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      +|..+-..|.+.|++++|+..|++..+.  .| +..+|+.+-.++...                |++++|++.|++..+.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~----------------g~~~~A~~~~~~al~~  100 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQA----------------GNFDAAYEAFDSVLEL  100 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHH----------------HHHHHhhhhhhHHHHH
Confidence            4777788899999999999999998876  33 456666666677665                6999999999999886


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC--------
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG--------  255 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--------  255 (593)
                      . +-+..++..+..++...|++++|.+.+++..+..  |+ ......+..++.+.+..+.+..+........        
T Consensus       101 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (259)
T d1xnfa_         101 D-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI  177 (259)
T ss_dssp             C-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH
T ss_pred             H-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH
Confidence            5 4456788889999999999999999999887643  43 2222223333334443333333333222111        


Q ss_pred             --------------------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          256 --------------------------VVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       256 --------------------------~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                                                ..|+ ..+|..|...|...|+.++|...|++...
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         178 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                                      0011 12355577788889999999999998876

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=0.00062  Score=65.10  Aligned_cols=274  Identities=8%  Similarity=-0.078  Sum_probs=168.7

Q ss_pred             HHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-
Q 007684           68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE----GVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-  138 (593)
Q Consensus        68 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-  138 (593)
                      .....+...|++++|...+++.+.      .....+.    ..++.+...|...|++++|+..|++..+.    +-.+. 
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~------~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALE------ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH------TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHh------hCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            344567889999999999966651      1111221    24777888899999999999999987653    11111 


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh----CCCC--CCH-HHHHHHHHHHHhcCChHHHHH
Q 007684          139 QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT----DKVD--PNE-ATFTSVARLAVAKEDPEMAFD  211 (593)
Q Consensus       139 ~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~----~g~~--p~~-~ty~~li~~~~~~g~~~~A~~  211 (593)
                      ..++..+...+...                |++..+.+.+.+...    .+..  +.. ..+..+...+...|+++.+..
T Consensus        91 ~~~~~~~~~~~~~~----------------~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~  154 (366)
T d1hz4a_          91 LWSLIQQSEILFAQ----------------GFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA  154 (366)
T ss_dssp             HHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHH
Confidence            12222233344443                588899888887653    2222  222 356677788999999999999


Q ss_pred             HHHHHHhCC----CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 007684          212 LVKQMKSFG----IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE--SGVVPE----EPELSALLKLSVDAKKVDKVYE  281 (593)
Q Consensus       212 l~~~m~~~g----~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~----~~t~~~Ll~~~~~~g~~~~a~~  281 (593)
                      .+.......    ......++..+...+...++..++...+.+...  ......    ...+..+...+...|+.++|..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  234 (366)
T d1hz4a_         155 SARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAAN  234 (366)
T ss_dssp             HHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHH
Confidence            999887532    112234556667778889999999888877653  111111    2235566677888999999999


Q ss_pred             HHHHHHHccCCCCHH---HHHHHHHHHhcchhhhhccccchh-hhHHHhhhcCCCcccccccccCCceEEEEecccCCCC
Q 007684          282 ILHRLRTLVRQVSES---TFKIIEDWFDSVDAAEIGVLNWDV-SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGV  357 (593)
Q Consensus       282 ~l~~m~~~~~~~~~~---t~~~l~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~  357 (593)
                      .+.+..+.....+..   .+..+...+...+       .++. ....+....                            
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~----------------------------  279 (366)
T d1hz4a_         235 WLRHTAKPEFANNHFLQGQWRNIARAQILLG-------EFEPAEIVLEELNE----------------------------  279 (366)
T ss_dssp             HHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHH----------------------------
T ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHH----------------------------
Confidence            988876543332222   2222333332222       2221 111111100                            


Q ss_pred             cCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHh
Q 007684          358 CCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGR  404 (593)
Q Consensus       358 c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~  404 (593)
                            ..+.....|.....+..+-..|...|+.++|++.|++.++-
T Consensus       280 ------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         280 ------NARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             ------HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ------HHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                  00011233455667777778899999999999999998764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=0.00018  Score=68.43  Aligned_cols=215  Identities=9%  Similarity=0.042  Sum_probs=136.5

Q ss_pred             HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCC-CHH
Q 007684           67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP-EGVLRHKLDMCSKRGDVFEALRLYDDARSN----GITL-SQH  140 (593)
Q Consensus        67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~  140 (593)
                      .-....|...|++++|...|.+......+  .+..++ ..+|+.+..+|.+.|++++|.+.+++..+.    |-.. ...
T Consensus        41 ~~aa~~y~~~~~~~~A~~~y~kA~~~~~~--~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          41 VQAATIYRLRKELNLAGDSFLKAADYQKK--AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            44456788899999999998766622211  111111 234899999999999999999999976543    2111 123


Q ss_pred             HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684          141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT----DKVDPN-EATFTSVARLAVAKEDPEMAFDLVKQ  215 (593)
Q Consensus       141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~  215 (593)
                      ++..+...|...               .|++++|++.|++..+    .+-.+. ..++..+...+...|++++|.+.+++
T Consensus       119 ~~~~l~~~~~~~---------------~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~  183 (290)
T d1qqea_         119 FKFELGEILEND---------------LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (290)
T ss_dssp             HHHHHHHHHHHT---------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhHhhH---------------HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence            344444455332               2589999999998653    232222 34688899999999999999999999


Q ss_pred             HHhCCCCCCc------ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHH
Q 007684          216 MKSFGIPPKL------RSYGPALFGFCKLGNTDKAYEVDAHMGESGVV-PE---EPELSALLKLSVD--AKKVDKVYEIL  283 (593)
Q Consensus       216 m~~~g~~p~~------~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---~~t~~~Ll~~~~~--~g~~~~a~~~l  283 (593)
                      ..........      ..|..++..+...|+.+.|...+++..+.... ++   ......|+.++..  .+.+++|...|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y  263 (290)
T d1qqea_         184 LIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF  263 (290)
T ss_dssp             HHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred             HHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            8763321111      12344566677899999999999998754321 12   2345667777655  23577777776


Q ss_pred             HHHHHccCCCCHHHHHHHH
Q 007684          284 HRLRTLVRQVSESTFKIIE  302 (593)
Q Consensus       284 ~~m~~~~~~~~~~t~~~l~  302 (593)
                      +++.    +.++.-..++.
T Consensus       264 ~~~~----~lD~~~~~~L~  278 (290)
T d1qqea_         264 DNFM----RLDKWKITILN  278 (290)
T ss_dssp             TTSS----CCCHHHHHHHH
T ss_pred             HHHh----hcCHHHHHHHH
Confidence            5543    35554333333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00089  Score=59.19  Aligned_cols=124  Identities=10%  Similarity=-0.018  Sum_probs=99.7

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      |+++.|++.|+++.    +|+..++..+..+|...|++++|.+.|++..+..  |+ ...|..+..+|.+.|+.++|.+.
T Consensus        19 ~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~~A~~~   92 (192)
T d1hh8a_          19 KDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYDLAIKD   92 (192)
T ss_dssp             TCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHHHHHHH
Confidence            59999999998753    6788899999999999999999999999998843  55 67889999999999999999999


Q ss_pred             HHHHHhCC------------C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH
Q 007684          248 DAHMGESG------------V--VPE-EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF  298 (593)
Q Consensus       248 ~~~m~~~g------------~--~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~  298 (593)
                      |++.....            .  .++ ..++..+..++.+.|++++|.+.+.+..+....+.....
T Consensus        93 ~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~  158 (192)
T d1hh8a_          93 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI  158 (192)
T ss_dssp             HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred             HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHH
Confidence            99876421            1  111 245667778899999999999999988775555444333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00084  Score=59.34  Aligned_cols=129  Identities=12%  Similarity=-0.004  Sum_probs=100.4

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      |+- -..+...|++++|++.|.++    ..|+..+|..+=.+|...                |++++|++.|++..+.. 
T Consensus         9 ~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~----------------g~~~~A~~~~~kAl~ld-   66 (192)
T d1hh8a_           9 WNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTIL----------------KNMTEAEKAFTRSINRD-   66 (192)
T ss_dssp             HHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-
T ss_pred             HHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHc----------------CCchhHHHHHHHHHHHh-
Confidence            443 56678889999999999864    356777777665567665                69999999999998876 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC------------CCCC---cccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG------------IPPK---LRSYGPALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g------------~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m  251 (593)
                      +-+...|..+..++.+.|++++|.+.|++.....            +...   ..++..+-.+|.+.|++++|.+.++..
T Consensus        67 p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          67 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5678899999999999999999999999976421            1111   133456788899999999999999988


Q ss_pred             HhCCCC
Q 007684          252 GESGVV  257 (593)
Q Consensus       252 ~~~g~~  257 (593)
                      ......
T Consensus       147 ~~~~~~  152 (192)
T d1hh8a_         147 TSMKSE  152 (192)
T ss_dssp             HTTCCS
T ss_pred             HhcCCC
Confidence            754433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00053  Score=55.25  Aligned_cols=83  Identities=10%  Similarity=0.031  Sum_probs=50.4

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD  248 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~  248 (593)
                      |++++|+.+|++..+.. +-+...|..+..++...|++++|...+++..+.+- .+...|..+..+|...|++++|...|
T Consensus        17 g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A~~~~   94 (117)
T d1elwa_          17 GNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEEAKRTY   94 (117)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCHHHHHHHH
Confidence            46666666666665544 44555666666666666666666666666665321 23455666666666666666666666


Q ss_pred             HHHHh
Q 007684          249 AHMGE  253 (593)
Q Consensus       249 ~~m~~  253 (593)
                      ++..+
T Consensus        95 ~~a~~   99 (117)
T d1elwa_          95 EEGLK   99 (117)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            66653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00074  Score=57.57  Aligned_cols=84  Identities=12%  Similarity=0.065  Sum_probs=72.8

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      |++++|++.|++..+.. +-+...|..+...|...|++++|.+.|++..+..  |+ ..+|..+..+|...|++++|.+.
T Consensus        24 ~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~~~eA~~~  100 (159)
T d1a17a_          24 KDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAALRD  100 (159)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            69999999999988876 6678889999999999999999999999998743  55 47888899999999999999999


Q ss_pred             HHHHHhCC
Q 007684          248 DAHMGESG  255 (593)
Q Consensus       248 ~~~m~~~g  255 (593)
                      +++.....
T Consensus       101 ~~~a~~~~  108 (159)
T d1a17a_         101 YETVVKVK  108 (159)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHcC
Confidence            99988643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.0011  Score=58.26  Aligned_cols=97  Identities=11%  Similarity=0.041  Sum_probs=66.0

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHH
Q 007684          188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSA  265 (593)
Q Consensus       188 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~  265 (593)
                      |+...+......+.+.|++++|...|++..+..  |+ ...|..+..+|.+.|++++|...|+...+  +.|+ ...|..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~   77 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF   77 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHH
Confidence            566666666777777777777777777766532  44 45677777777777777777777777664  3343 455777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 007684          266 LLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       266 Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      +..+|...|++++|...|++..+
T Consensus        78 lg~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            77777777777777777776654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.032  Score=52.34  Aligned_cols=165  Identities=17%  Similarity=0.023  Sum_probs=114.4

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684          108 RHKLDMCSKRGDVFEALRLYDDARSNGITLS----QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT  183 (593)
Q Consensus       108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~  183 (593)
                      ...-..+...|++++|+.++++..+..-.-+    ...++.+-.+|...                |++++|.+.|++..+
T Consensus        16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~----------------g~~~~A~~~~~~a~~   79 (366)
T d1hz4a_          16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK----------------GELTRSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHH
Confidence            3344557789999999999999887621111    12344444455554                699999999998765


Q ss_pred             C----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684          184 D----KVDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKS----FGIPPK---LRSYGPALFGFCKLGNTDKAYEVDAHM  251 (593)
Q Consensus       184 ~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m  251 (593)
                      .    +-.+ ...++..+...+...|+++.|...+.+...    .+....   ...+..+...+...|+.+.|...+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~  159 (366)
T d1hz4a_          80 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG  159 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHH
Confidence            2    1111 134667778888999999999999988653    222111   135556677888999999999999988


Q ss_pred             HhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          252 GES----GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       252 ~~~----g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      ...    +.......+..+...+...+...++...+.+...
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~  200 (366)
T d1hz4a_         160 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLEN  200 (366)
T ss_dssp             HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            743    2233445567777788889999999888877655

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=0.00022  Score=69.06  Aligned_cols=260  Identities=8%  Similarity=-0.056  Sum_probs=144.9

Q ss_pred             HHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHH---HHHHHHc-------CCCHHHHHHHHHHHHHCCCCC
Q 007684           68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRH---KLDMCSK-------RGDVFEALRLYDDARSNGITL  137 (593)
Q Consensus        68 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---li~~~~~-------~g~~~~A~~l~~~m~~~g~~p  137 (593)
                      .++.........++|..++.+.+       ...+.....|+.   ++.....       .|++++|+.+++...+.. +-
T Consensus        34 ~~~~~~~~~~~~~~al~~~~~~l-------~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk  105 (334)
T d1dcea1          34 AVFQKRQAGELDESVLELTSQIL-------GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK  105 (334)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHhcccccHHHHHHHHHHH-------HHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CC
Confidence            33333333344467777775555       333334444433   2222222       345778888888877653 22


Q ss_pred             CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHH
Q 007684          138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFT-SVARLAVAKEDPEMAFDLVKQM  216 (593)
Q Consensus       138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~-~li~~~~~~g~~~~A~~l~~~m  216 (593)
                      +...|..+-.++...+              .+++++|+..++.+.+.. +++...+. .+...+...+..++|...+++.
T Consensus       106 ~~~~~~~~~~~~~~~~--------------~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~  170 (334)
T d1dcea1         106 SYGTWHHRCWLLSRLP--------------EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  170 (334)
T ss_dssp             CHHHHHHHHHHHHTCS--------------SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred             cHHHHHHhhHHHHHhc--------------cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHH
Confidence            4555555544444432              246788888888887765 44555544 3445666778888888888877


Q ss_pred             HhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH
Q 007684          217 KSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE  295 (593)
Q Consensus       217 ~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~  295 (593)
                      .+..  |+ ...|+.+...+.+.|+.++|...+......  .|+   ...+...+...+..+++...+.+...... +..
T Consensus       171 i~~~--p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~  242 (334)
T d1dcea1         171 ITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPL  242 (334)
T ss_dssp             TTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCS
T ss_pred             HHcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chh
Confidence            7643  43 566777788888888887765544433221  011   11222233444555555555555443211 111


Q ss_pred             HHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHH
Q 007684          296 STFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRET  375 (593)
Q Consensus       296 ~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~  375 (593)
                      ..+..+...+...+.            .                                  ...+....+.+...|...
T Consensus       243 ~~~~~l~~~~~~~~~------------~----------------------------------~~a~~~~~~~~~~~p~~~  276 (334)
T d1dcea1         243 FRCELSVEKSTVLQS------------E----------------------------------LESCKELQELEPENKWCL  276 (334)
T ss_dssp             SSCCCCHHHHHHHHH------------H----------------------------------HHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHHhh------------H----------------------------------HHHHHHHHHHHhhCchHH
Confidence            111111111100000            0                                  011223334555778888


Q ss_pred             HHHHHHHHHHhhhhhhHHhHHHHHHHHHh
Q 007684          376 ENFASSLSNLACQREVRSDFNKFQEWLGR  404 (593)
Q Consensus       376 ~~~~~~i~~l~~~~~~~~a~~~f~~~l~~  404 (593)
                      ..+..+...|...|+.++|++.|++.++.
T Consensus       277 ~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         277 LTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998875

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=0.0016  Score=61.51  Aligned_cols=168  Identities=8%  Similarity=-0.099  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ  180 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~  180 (593)
                      .|......|...|++++|.+.|.++.+.    +-.++ ..+|+.+-.+|.+.                |++++|.+.+++
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~----------------~~~~~A~~~~~~  102 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG----------------GNSVNAVDSLEN  102 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh----------------CCcHHHHHHHHH
Confidence            3888889999999999999999987653    22222 24556656677665                699999999997


Q ss_pred             HHh----CCC-CCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCChhHHHHHHH
Q 007684          181 MIT----DKV-DPNEATFTSVARLAV-AKEDPEMAFDLVKQMKS----FGIPPK-LRSYGPALFGFCKLGNTDKAYEVDA  249 (593)
Q Consensus       181 M~~----~g~-~p~~~ty~~li~~~~-~~g~~~~A~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~  249 (593)
                      ...    .|- .....++..+...|- ..|++++|.+.+++..+    .+-.+. ..+|..+...|.+.|++++|.+.|+
T Consensus       103 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~  182 (290)
T d1qqea_         103 AIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS  182 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHH
Confidence            654    221 112345666776774 46999999999998753    222222 3568889999999999999999999


Q ss_pred             HHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          250 HMGESGVV-----PEEP-ELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       250 ~m~~~g~~-----p~~~-t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      +.......     .... .+..++..+...|+.+.|...+++..+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~  228 (290)
T d1qqea_         183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (290)
T ss_dssp             HHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            98754322     1221 2344555667889999999999988663

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.0016  Score=57.27  Aligned_cols=83  Identities=11%  Similarity=-0.005  Sum_probs=74.2

Q ss_pred             cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHH
Q 007684          168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYE  246 (593)
Q Consensus       168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~  246 (593)
                      .|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|...|++..+  +.|+ ..+|..+..+|.+.|++++|..
T Consensus        17 ~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~~~~A~~   93 (201)
T d2c2la1          17 GRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMESYDEAIA   93 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            379999999999988776 66888999999999999999999999999986  4576 5688999999999999999999


Q ss_pred             HHHHHHh
Q 007684          247 VDAHMGE  253 (593)
Q Consensus       247 l~~~m~~  253 (593)
                      .|++..+
T Consensus        94 ~~~~al~  100 (201)
T d2c2la1          94 NLQRAYS  100 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0042  Score=49.60  Aligned_cols=100  Identities=14%  Similarity=0.014  Sum_probs=82.1

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      +...-..+.+.|++++|+..|++..+.. +-+...|..+-.++...                |++++|++.++...+.+ 
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~----------------~~~~~A~~~~~~al~~~-   67 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKK----------------GDYQKAYEDGCKTVDLK-   67 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC-Ccchhhhhccccccccc----------------ccccccchhhhhHHHhc-
Confidence            4456677899999999999999998763 22555666665566665                69999999999999877 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR  226 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  226 (593)
                      +.+...|..+..++...|++++|...|++..+  +.|+..
T Consensus        68 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~p~~~  105 (117)
T d1elwa_          68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK--HEANNP  105 (117)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred             cchhhHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCH
Confidence            67888999999999999999999999999987  446643

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0039  Score=52.76  Aligned_cols=98  Identities=12%  Similarity=0.009  Sum_probs=80.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV  186 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~  186 (593)
                      +...-..|.+.|++++|+..|.+..+.. +-+...|..+-.+|...                |++++|.+.|++..+.. 
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~----------------~~~~~A~~~~~kal~~~-   74 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRT----------------ECYGYALGDATRAIELD-   74 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT----------------TCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhc----------------cccchHHHHHHHHHHHc-
Confidence            5666778999999999999999999873 22455555555566665                69999999999998876 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684          187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK  224 (593)
Q Consensus       187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  224 (593)
                      +-+..+|..+..++...|++++|...+++....  .|+
T Consensus        75 p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~--~p~  110 (159)
T d1a17a_          75 KKYIKGYYRRAASNMALGKFRAALRDYETVVKV--KPH  110 (159)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Confidence            567789999999999999999999999999874  355

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0013  Score=53.36  Aligned_cols=95  Identities=15%  Similarity=0.041  Sum_probs=65.2

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP---EMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKA  244 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~---~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A  244 (593)
                      +++++|.+.|++....+ +.+..++..+..++.+.++.   ++|..+++++....-.|+ ..++..+..+|.+.|++++|
T Consensus        13 ~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A   91 (122)
T d1nzna_          13 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   91 (122)
T ss_dssp             HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHH
Confidence            57888888888887766 66777888888887765544   457888887766443233 23566677888888888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHH
Q 007684          245 YEVDAHMGESGVVPEEPELSAL  266 (593)
Q Consensus       245 ~~l~~~m~~~g~~p~~~t~~~L  266 (593)
                      .+.|++..+.  .|+......+
T Consensus        92 ~~~~~~aL~~--~P~~~~A~~l  111 (122)
T d1nzna_          92 LKYVRGLLQT--EPQNNQAKEL  111 (122)
T ss_dssp             HHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHHHHHh--CcCCHHHHHH
Confidence            8888887753  3655443333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.13  E-value=0.00058  Score=54.55  Aligned_cols=84  Identities=8%  Similarity=-0.057  Sum_probs=42.5

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007684          199 LAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD  277 (593)
Q Consensus       199 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~  277 (593)
                      .+.+.|++++|...|++.....  |+ ...|..+..+|.+.|++++|...|++..+.. +-+...+..|..+|...|+.+
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHH
Confidence            4445555555555555554422  33 3445555555555555555555555544322 112344555555555555555


Q ss_pred             HHHHHHHH
Q 007684          278 KVYEILHR  285 (593)
Q Consensus       278 ~a~~~l~~  285 (593)
                      +|.+.+++
T Consensus       102 ~A~~~l~~  109 (112)
T d1hxia_         102 AALASLRA  109 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.001  Score=53.93  Aligned_cols=106  Identities=14%  Similarity=0.018  Sum_probs=82.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 007684          194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN---TDKAYEVDAHMGESGVVPEE-PELSALLKL  269 (593)
Q Consensus       194 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~  269 (593)
                      ..+++.+...+++++|.+.|++....+- .+..++..+..++.+.++   .++|.+++++....+..|+. ..+..|..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            5688899999999999999999988442 345777778888887554   45799999998865544442 367788999


Q ss_pred             HHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 007684          270 SVDAKKVDKVYEILHRLRTLVRQVSESTFKIIE  302 (593)
Q Consensus       270 ~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~  302 (593)
                      |.+.|++++|.+.|+++.+  +.|+......+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~  112 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELE  112 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence            9999999999999999988  456655444444

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.84  E-value=0.0033  Score=49.82  Aligned_cols=84  Identities=12%  Similarity=0.086  Sum_probs=73.6

Q ss_pred             cccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 007684          166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKA  244 (593)
Q Consensus       166 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A  244 (593)
                      .+.|++++|+..|++..... +-+..+|..+..++.+.|++++|...+++..+.  .|+ ...+..+...|...|+.++|
T Consensus        27 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~g~~~~A  103 (112)
T d1hxia_          27 LKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANAA  103 (112)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHCCCHHHH
Confidence            45799999999999998876 457889999999999999999999999999874  365 67888899999999999999


Q ss_pred             HHHHHHHH
Q 007684          245 YEVDAHMG  252 (593)
Q Consensus       245 ~~l~~~m~  252 (593)
                      .+.+++.+
T Consensus       104 ~~~l~~~l  111 (112)
T d1hxia_         104 LASLRAWL  111 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998763

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.72  E-value=0.022  Score=49.11  Aligned_cols=107  Identities=12%  Similarity=-0.029  Sum_probs=79.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHhC--CC-CCC------------------cccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 007684          198 RLAVAKEDPEMAFDLVKQMKSF--GI-PPK------------------LRSYGPALFGFCKLGNTDKAYEVDAHMGESGV  256 (593)
Q Consensus       198 ~~~~~~g~~~~A~~l~~~m~~~--g~-~p~------------------~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~  256 (593)
                      ......|++++|.+.|.+....  |- .++                  ...+..+..++.+.|++++|...++.+.+.. 
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-   97 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-   97 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-
Confidence            3455667777777666666541  11 011                  1356778889999999999999999998643 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----ccCCCCHHHHHHHHHHH
Q 007684          257 VPEEPELSALLKLSVDAKKVDKVYEILHRLRT-----LVRQVSESTFKIIEDWF  305 (593)
Q Consensus       257 ~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~-----~~~~~~~~t~~~l~~~~  305 (593)
                      .-++..|..++.+|...|+.++|.+.|+++++     .|+.|++.+-.......
T Consensus        98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il  151 (179)
T d2ff4a2          98 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERIL  151 (179)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence            24778899999999999999999999999744     68999988765555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.59  E-value=0.0014  Score=61.03  Aligned_cols=120  Identities=16%  Similarity=0.084  Sum_probs=80.5

Q ss_pred             ccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChhHHH
Q 007684          167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-RSYGPALFGFCKLGNTDKAY  245 (593)
Q Consensus       167 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~  245 (593)
                      +.|++++|++.|++..+.. +-|...+..+...++..|++++|.+.++...+.  .|+. ..+..+...+...+..+++.
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHHH
Confidence            4589999999999999887 778899999999999999999999999999873  4663 33333333332222222221


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       246 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      .-...-...+-.++...+......+...|+.++|.++++++.+.
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            11111001111122233444556677899999999999998773

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0061  Score=49.50  Aligned_cols=81  Identities=12%  Similarity=0.091  Sum_probs=50.6

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------cccHHHHHHHHHhcCC
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--------LRSYGPALFGFCKLGN  240 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------~~ty~~li~~~~~~g~  240 (593)
                      |++++|++.|++..+.+ +.+..++..+..+|.+.|++++|.+.++++.+..  |+        ..+|..+...+...++
T Consensus        18 ~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~--~~~~~~~~~~a~~~~~lg~~~~~~~~   94 (128)
T d1elra_          18 KDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQIAKAYARIGNSYFKEEK   94 (128)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            57777777777776655 4466677777777777777777777777765411  11        1244455555566666


Q ss_pred             hhHHHHHHHHHH
Q 007684          241 TDKAYEVDAHMG  252 (593)
Q Consensus       241 ~~~A~~l~~~m~  252 (593)
                      +++|.+.|+.-.
T Consensus        95 ~~~A~~~~~kal  106 (128)
T d1elra_          95 YKDAIHFYNKSL  106 (128)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666666544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.0026  Score=61.17  Aligned_cols=198  Identities=8%  Similarity=-0.019  Sum_probs=132.5

Q ss_pred             CcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCC
Q 007684           78 TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKR--GDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCG  154 (593)
Q Consensus        78 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~  154 (593)
                      ++++|...++..+       ...+.....+..+..++...  ++.++|+..+.++.+.. .++...+..++. .+...  
T Consensus        88 ~~~~al~~~~~~l-------~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~--  157 (334)
T d1dcea1          88 LVKAELGFLESCL-------RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAA--  157 (334)
T ss_dssp             HHHHHHHHHHHHH-------HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHH-------HhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhc--
Confidence            3556666665554       34455566666666666665  46899999999988763 235566555554 44443  


Q ss_pred             CCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH-------------------------
Q 007684          155 SESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMA-------------------------  209 (593)
Q Consensus       155 ~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A-------------------------  209 (593)
                                    |..++|++.++...+.. +-+..+|+.+..++...|+.++|                         
T Consensus       158 --------------~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  222 (334)
T d1dcea1         158 --------------VAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD  222 (334)
T ss_dssp             --------------CCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred             --------------cccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhc
Confidence                          58999999999988876 56788888888888887776543                         


Q ss_pred             -----HHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 007684          210 -----FDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEIL  283 (593)
Q Consensus       210 -----~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l  283 (593)
                           ...+....... .++...+..+...+...|+.++|.+.+.+.....  | +...+..+..++...|+.++|.+.+
T Consensus       223 ~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~  299 (334)
T d1dcea1         223 PNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYF  299 (334)
T ss_dssp             SSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                 22222222211 2334556667778888899999999988876433  3 3455777888999999999999999


Q ss_pred             HHHHHccCCCCH-HHHHHHHHHH
Q 007684          284 HRLRTLVRQVSE-STFKIIEDWF  305 (593)
Q Consensus       284 ~~m~~~~~~~~~-~t~~~l~~~~  305 (593)
                      ++..+  +.|+. ..|..+...+
T Consensus       300 ~~ai~--ldP~~~~y~~~L~~~~  320 (334)
T d1dcea1         300 STLKA--VDPMRAAYLDDLRSKF  320 (334)
T ss_dssp             HHHHH--HCGGGHHHHHHHHHHH
T ss_pred             HHHHH--HCcccHHHHHHHHHHH
Confidence            99977  33432 3444444433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.018  Score=46.52  Aligned_cols=104  Identities=13%  Similarity=0.111  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCC----HHHHH
Q 007684          192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG--VVPE----EPELS  264 (593)
Q Consensus       192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~  264 (593)
                      .+-.+-..+...|++++|.+.|.+..+.+  |+ ...|..+..+|.+.|++++|.+.++++.+..  ....    ..+|.
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34567778999999999999999998853  44 6789999999999999999999999987421  1111    24677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 007684          265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK  299 (593)
Q Consensus       265 ~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~  299 (593)
                      .+...+...+++++|.+.+++....  .+++....
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~  116 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLK  116 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHH
Confidence            7888888999999999999987653  34444443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.28  E-value=0.022  Score=49.09  Aligned_cols=124  Identities=9%  Similarity=-0.019  Sum_probs=84.3

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC
Q 007684          108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD  187 (593)
Q Consensus       108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~  187 (593)
                      ...-......|++++|.+.|.+..+.  -++..     +..+..                 +.+  +...-..+..    
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~-----l~~~~~-----------------~~w--~~~~r~~l~~----   64 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALRE--WRGPV-----LDDLRD-----------------FQF--VEPFATALVE----   64 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT--CCSST-----TGGGTT-----------------STT--HHHHHHHHHH----
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc-----cccCcc-----------------hHH--HHHHHHHHHH----
Confidence            33445688899999999999998764  11110     000000                 011  1111111111    


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCHHH
Q 007684          188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG-----ESGVVPEEPE  262 (593)
Q Consensus       188 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t  262 (593)
                      -....+..+..++...|++++|...++++.+..- -+...|..++.+|.+.|+.++|.+.|+++.     +.|+.|...+
T Consensus        65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            1235678889999999999999999999987431 346789999999999999999999999874     4699998765

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.044  Score=46.52  Aligned_cols=94  Identities=14%  Similarity=0.016  Sum_probs=65.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC-------------CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684          193 FTSVARLAVAKEDPEMAFDLVKQMKSFG-IPP-------------KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP  258 (593)
Q Consensus       193 y~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p-------------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  258 (593)
                      +......+.+.|++++|...|.+..... ..+             ...+|+.+..+|.+.|++++|+..+++.....  |
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~--p   93 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--S   93 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc--c
Confidence            3444556777777777777777765421 001             11356667777888888888888888877643  4


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          259 -EEPELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       259 -~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                       +...|..+..+|...|++++|...|++..+
T Consensus        94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence             566678888888888888888888888866

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.23  E-value=0.055  Score=44.98  Aligned_cols=90  Identities=13%  Similarity=-0.015  Sum_probs=64.2

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCC-C---C-----------CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 007684          198 RLAVAKEDPEMAFDLVKQMKSFGI-P---P-----------KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE  262 (593)
Q Consensus       198 ~~~~~~g~~~~A~~l~~~m~~~g~-~---p-----------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  262 (593)
                      ..+.+.|++++|...|.+....-. .   +           ...+|+.+..+|.+.|++++|.+.++...+.. +-+...
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka  103 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKA  103 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhh
Confidence            455666777777777776653110 0   0           12366778888888888888888888877643 235677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          263 LSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       263 ~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                      |..+..++...|++++|...|++..+
T Consensus       104 ~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1         104 LYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            88888888888888888888888876

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.21  E-value=0.021  Score=47.70  Aligned_cols=91  Identities=9%  Similarity=0.011  Sum_probs=72.5

Q ss_pred             ccHHHHHHHHHHHHhCC----CCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHH
Q 007684          169 LGLKRGFEIFQQMITDK----VDPN-----------EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPAL  232 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g----~~p~-----------~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li  232 (593)
                      |++.+|+..|.+....-    ..++           ..+|+.+..+|.+.|++++|++.+++..+..  | +..+|-.+.
T Consensus        31 ~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~--p~~~ka~~~~g  108 (153)
T d2fbna1          31 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLG  108 (153)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc--chhhhhhHHhH
Confidence            58899999998876521    1111           3478889999999999999999999998743  5 468999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 007684          233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPEL  263 (593)
Q Consensus       233 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  263 (593)
                      .+|...|++++|...|+...+..  |+..+.
T Consensus       109 ~~~~~lg~~~~A~~~~~~al~l~--P~n~~~  137 (153)
T d2fbna1         109 VANMYFGFLEEAKENLYKAASLN--PNNLDI  137 (153)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHS--TTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Confidence            99999999999999999988644  654443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.086  Score=44.60  Aligned_cols=111  Identities=10%  Similarity=-0.042  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684          106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK  185 (593)
Q Consensus       106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g  185 (593)
                      .++..-..+.+.|++++|+..|.+..+.-  |             ...               +....-......+.   
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~-------------~~~---------------~~~~~~~~~~~~~~---   61 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--E-------------YES---------------SFSNEEAQKAQALR---   61 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--T-------------TCC---------------CCCSHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--h-------------hcc---------------ccchHHHhhhchhH---
Confidence            36667778999999999999999877531  0             000               00001111111111   


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684          186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESG  255 (593)
Q Consensus       186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g  255 (593)
                          ..+|+.+..+|.+.|++++|...+++..+..  | +...|..+..+|...|++++|...|++..+..
T Consensus        62 ----~~~~~nla~~y~k~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          62 ----LASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHHHhhhhcccccchhhhhhhcc--ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence                2367888889999999999999999988743  5 46788888999999999999999999988643

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.68  E-value=0.015  Score=48.19  Aligned_cols=114  Identities=11%  Similarity=-0.004  Sum_probs=77.8

Q ss_pred             ccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCC-cccHHHHHH
Q 007684          165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK----------EDPEMAFDLVKQMKSFGIPPK-LRSYGPALF  233 (593)
Q Consensus       165 ~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~  233 (593)
                      +-+.+.+++|.+.|+...+.. +-+..++..+..++...          +.+++|...|++..+  +.|+ ..+|..+..
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~   83 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence            445578999999999998876 66778888888887743          445788888888877  3465 567877888


Q ss_pred             HHHhcCC-----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684          234 GFCKLGN-----------TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL  289 (593)
Q Consensus       234 ~~~~~g~-----------~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~  289 (593)
                      +|...|+           +++|.+.|++..+  +.|+...|..-+..+      .++.+++.+..+.
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~  142 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQ  142 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence            8876553           4667777776663  346666655544444      3445555554443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.44  E-value=0.1  Score=43.34  Aligned_cols=97  Identities=7%  Similarity=0.012  Sum_probs=73.2

Q ss_pred             HHHHHH--HHHHHhcCChHHHHHHHHHHHh--CCCCCC----------cccHHHHHHHHHhcCChhHHHHHHHHHHhC--
Q 007684          191 ATFTSV--ARLAVAKEDPEMAFDLVKQMKS--FGIPPK----------LRSYGPALFGFCKLGNTDKAYEVDAHMGES--  254 (593)
Q Consensus       191 ~ty~~l--i~~~~~~g~~~~A~~l~~~m~~--~g~~p~----------~~ty~~li~~~~~~g~~~~A~~l~~~m~~~--  254 (593)
                      .+|..+  ...+...|++++|.+.|++..+  ... |+          ...|+.+..+|.+.|++++|.+-+++....  
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~-~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM-PPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhh-hhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            456666  4456678999999999999875  222 32          256888999999999999999998887631  


Q ss_pred             ---CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684          255 ---GVVPEE-----PELSALLKLSVDAKKVDKVYEILHRLRT  288 (593)
Q Consensus       255 ---g~~p~~-----~t~~~Ll~~~~~~g~~~~a~~~l~~m~~  288 (593)
                         ...++.     ..+..+..+|...|+.++|.+.|++..+
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               222332     2467788999999999999999998765

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.32  E-value=0.037  Score=46.85  Aligned_cols=83  Identities=12%  Similarity=0.086  Sum_probs=51.7

Q ss_pred             ccHHHHHHHHHHHHhC--------------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHH
Q 007684          169 LGLKRGFEIFQQMITD--------------KV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPAL  232 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~--------------g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li  232 (593)
                      |++++|++.|.+..+.              .+ +.+...|..+..++.+.|++++|+..+++..+.  .|+ ...|..+.
T Consensus        41 ~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~--~p~~~~a~~~~g  118 (169)
T d1ihga1          41 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRA  118 (169)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh--hhhhhhHHHhHH
Confidence            4788888877765421              01 123335566666666777777777777776653  243 45666667


Q ss_pred             HHHHhcCChhHHHHHHHHHHh
Q 007684          233 FGFCKLGNTDKAYEVDAHMGE  253 (593)
Q Consensus       233 ~~~~~~g~~~~A~~l~~~m~~  253 (593)
                      .+|.+.|++++|.+.|+...+
T Consensus       119 ~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1         119 QGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHH
Confidence            777777777777777776665

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.19  E-value=0.12  Score=43.58  Aligned_cols=99  Identities=9%  Similarity=-0.013  Sum_probs=74.3

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccH
Q 007684          107 LRHKLDMCSKRGDVFEALRLYDDARSN--------------GITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL  171 (593)
Q Consensus       107 ~~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~  171 (593)
                      +......+.+.|++++|+..|.++.+.              -+.| +...|+.+-.++.+.                |++
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----------------~~~   93 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM----------------SDW   93 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT----------------TCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhh----------------ccc
Confidence            566677788999999999999887532              0111 112222222344443                699


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684          172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK  224 (593)
Q Consensus       172 ~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  224 (593)
                      ++|+..+++..+.. +-+..+|..+..++...|++++|.+.|++..+.  .|+
T Consensus        94 ~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~  143 (169)
T d1ihga1          94 QGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APE  143 (169)
T ss_dssp             HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred             chhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCC
Confidence            99999999999876 667889999999999999999999999999883  455

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=94.80  E-value=0.2  Score=42.05  Aligned_cols=118  Identities=13%  Similarity=0.036  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD  184 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~  184 (593)
                      ..+.-....+.+.|++.+|+..|.+....            +..+...                 ..+. ....+.+.  
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~------------~~~~~~~-----------------~~~~-~~~~~~~~--   63 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW------------LEMEYGL-----------------SEKE-SKASESFL--   63 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HTTCCSC-----------------CHHH-HHHHHHHH--
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhhcc-----------------chhh-hhhcchhH--
Confidence            34777888899999999999999876532            1000000                 1111 11111111  


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 007684          185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE  262 (593)
Q Consensus       185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  262 (593)
                           ...|+.+..+|.+.|++++|+..+++..+.. +.+..+|-.+..+|...|++++|.+.|++....  .|+...
T Consensus        64 -----~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~  133 (168)
T d1kt1a1          64 -----LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKA  133 (168)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHH
T ss_pred             -----HHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHH
Confidence                 3467788888888999999999888887743 133567778888888999999999999988754  355444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=94.79  E-value=0.018  Score=53.22  Aligned_cols=123  Identities=13%  Similarity=0.015  Sum_probs=79.7

Q ss_pred             HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH
Q 007684          114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF  193 (593)
Q Consensus       114 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty  193 (593)
                      ..+.|++++|+..+++..+.. +-|...+..|..++...                |++++|.+.|+...+.. +-+..++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~----------------G~~e~A~~~l~~a~~l~-P~~~~~~   67 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCID----------------GDFERADEQLMQSIKLF-PEYLPGA   67 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHC-GGGHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHhC-CCcHHHH
Confidence            446799999999999998883 23667777788877775                69999999999998764 2234455


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       194 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      ..+...+...+..+++..-...-...+-.+....+......+.+.|+.++|.+++++..+.
T Consensus        68 ~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          68 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            5554444433333322221111011111122344455567788899999999999998753

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=94.62  E-value=0.51  Score=39.29  Aligned_cols=103  Identities=10%  Similarity=-0.020  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC-------------CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684          192 TFTSVARLAVAKEDPEMAFDLVKQMKSF-GIPP-------------KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV  257 (593)
Q Consensus       192 ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p-------------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~  257 (593)
                      .+.-....+.+.|++++|...|++.... ...+             ....|+.+-.+|.+.|++++|...++...... +
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p   95 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S   95 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-c
Confidence            3445566778888888888888776531 1111             12356778888999999999999999988643 3


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHH
Q 007684          258 PEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST  297 (593)
Q Consensus       258 p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t  297 (593)
                      .+...|..+..++...|++++|...|.+..+  +.|+...
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~  133 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKA  133 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH
Confidence            4677799999999999999999999999976  4454443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.45  E-value=0.084  Score=43.41  Aligned_cols=124  Identities=10%  Similarity=-0.018  Sum_probs=82.1

Q ss_pred             cCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHH
Q 007684          116 KRGDVFEALRLYDDARSNGITLSQ-HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFT  194 (593)
Q Consensus       116 ~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~  194 (593)
                      +.+.+++|+..|+...+.  .|+. ..+..+=.+|...+..      ....-..+.+++|++.|++..+.. +-+..+|.
T Consensus         9 r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~------~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~   79 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQF------HSISDAKQMIQEAITKFEEALLID-PKKDEAVW   79 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhh------hhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHh
Confidence            445689999999999877  4544 4444333344321000      000001246789999999998876 66778999


Q ss_pred             HHHHHHHhcCC-----------hHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 007684          195 SVARLAVAKED-----------PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV  256 (593)
Q Consensus       195 ~li~~~~~~g~-----------~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~  256 (593)
                      .+..+|...|+           +++|.+.|++..+  +.|+...|...+..+      .+|.+++.+..+.|+
T Consensus        80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            99988877553           5778888888877  558877776555544      467778877776664

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.41  Score=47.94  Aligned_cols=131  Identities=8%  Similarity=-0.078  Sum_probs=72.2

Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684          170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA  249 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~  249 (593)
                      .++.|+..+....... +++...+..+...+.+.|+.++|...++......  | ..++..+...+...|++++|...|+
T Consensus       101 ~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~  176 (497)
T d1ya0a1         101 FYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYR  176 (497)
T ss_dssp             HHHHHHHHHTC--------------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence            4455554444333222 3455677778888888899998888777665421  1 2567778889999999999999999


Q ss_pred             HHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhc
Q 007684          250 HMGESGVVPEE-PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDS  307 (593)
Q Consensus       250 ~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~  307 (593)
                      +..+.  .|+. ..|+.|...+...|+..+|...|.+.... ..|-+..+.-|...|..
T Consensus       177 ~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         177 HAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred             HHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHH
Confidence            98754  3554 56999999999999999999998888763 34566667777776643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.27  E-value=0.24  Score=40.85  Aligned_cols=84  Identities=7%  Similarity=0.014  Sum_probs=65.0

Q ss_pred             ccHHHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-----ccc
Q 007684          169 LGLKRGFEIFQQMITDKV-DP----------NEATFTSVARLAVAKEDPEMAFDLVKQMKSF-----GIPPK-----LRS  227 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~-~p----------~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-----~~t  227 (593)
                      |++++|++.|++..+..- .|          ...+|+.+..+|.+.|++++|.+-+++....     ...++     ...
T Consensus        23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a  102 (156)
T d2hr2a1          23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA  102 (156)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHH
Confidence            689999999999875211 12          1467999999999999999999999987641     12222     125


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH
Q 007684          228 YGPALFGFCKLGNTDKAYEVDAHMG  252 (593)
Q Consensus       228 y~~li~~~~~~g~~~~A~~l~~~m~  252 (593)
                      |+.+..+|.+.|+.++|.+.|++..
T Consensus       103 ~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1         103 VYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            6778899999999999999999876

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.26  E-value=1  Score=42.30  Aligned_cols=175  Identities=8%  Similarity=0.029  Sum_probs=101.2

Q ss_pred             cccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 007684           62 ADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQH  140 (593)
Q Consensus        62 ~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  140 (593)
                      |+... ..+.+-|-+.|.++.|..+|..+-               .|..++..+.+.+++..|.+++...  .    +..
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------------d~~rl~~~~v~l~~~~~avd~~~k~--~----~~~   70 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------NFGRLASTLVHLGEYQAAVDGARKA--N----STR   70 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------------CHHHHHHHHHTTTCHHHHHHHHHHH--T----CHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------------CHHHHHHHHHhhccHHHHHHHHHHc--C----CHH
Confidence            44444 667777778888888888882221               2677888889999999998887643  2    567


Q ss_pred             HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007684          141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG  220 (593)
Q Consensus       141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g  220 (593)
                      +|.-++..|.+..                ...-     .++.......+......++..|-..|.+++...+++..... 
T Consensus        71 ~~k~~~~~l~~~~----------------e~~l-----a~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-  128 (336)
T d1b89a_          71 TWKEVCFACVDGK----------------EFRL-----AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-  128 (336)
T ss_dssp             HHHHHHHHHHHTT----------------CHHH-----HHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHhCc----------------HHHH-----HHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-
Confidence            8888888888752                2221     23333444556666778889999999999999999877542 


Q ss_pred             CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684          221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL  286 (593)
Q Consensus       221 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m  286 (593)
                      -.++...++-++..|++.+ .++-++.+...   .-..|   ...++..|.+.+.++++.-++.++
T Consensus       129 ~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~---s~~y~---~~k~~~~c~~~~l~~elv~Ly~~~  187 (336)
T d1b89a_         129 ERAHMGMFTELAILYSKFK-PQKMREHLELF---WSRVN---IPKVLRAAEQAHLWAELVFLYDKY  187 (336)
T ss_dssp             TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH---STTSC---HHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             CccchHHHHHHHHHHHHhC-hHHHHHHHHhc---cccCC---HHHHHHHHHHcCChHHHHHHHHhc
Confidence            2345567888889998864 33333333322   11122   233445555555555555555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=92.65  E-value=0.99  Score=35.73  Aligned_cols=48  Identities=8%  Similarity=0.043  Sum_probs=26.9

Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 007684          170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVA----KEDPEMAFDLVKQMKSFG  220 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g  220 (593)
                      +.++|++.|++..+.|   +..++..|...|..    ..+.++|.++|++..+.|
T Consensus        38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g   89 (133)
T d1klxa_          38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN   89 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC
Confidence            5667777777666655   33444444444443    344566666666665544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=91.39  E-value=2.5  Score=32.96  Aligned_cols=120  Identities=13%  Similarity=0.084  Sum_probs=90.3

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCC----------------CcccHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPP----------------KLRSYGPA  231 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p----------------~~~ty~~l  231 (593)
                      |..+++.++..+....   .+..-||-+|--....-+-+..+++++.+.+ ..+.|                +..-.+..
T Consensus        16 G~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vdlA   92 (161)
T d1wy6a1          16 GYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKA   92 (161)
T ss_dssp             TCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHH
T ss_pred             hhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHHHH
Confidence            6889999999988763   3556677777777777888888888887743 22211                23345667


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC
Q 007684          232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ  292 (593)
Q Consensus       232 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~  292 (593)
                      ++.+.++|+-|.-.++++++.+ +-+|+....-.+..+|.+-|...++-+++.+.-+.|..
T Consensus        93 Ld~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          93 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            7888888888888888888766 55678888888999999999999999999988877653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.40  E-value=1.1  Score=33.19  Aligned_cols=64  Identities=14%  Similarity=0.074  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhC---C--CCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684          191 ATFTSVARLAVAKEDPEMAFDLVKQMKSF---G--IPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGES  254 (593)
Q Consensus       191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~---g--~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~  254 (593)
                      ..+-.+...+.+.|++++|...|++..+.   .  ..++ ..+|+.+..+|.+.|++++|.+.+++..+.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            33445667777888888888887776531   1  1122 345777777777888888888888777653

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.81  E-value=3.4  Score=38.45  Aligned_cols=16  Identities=13%  Similarity=0.075  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHhcCCH
Q 007684          261 PELSALLKLSVDAKKV  276 (593)
Q Consensus       261 ~t~~~Ll~~~~~~g~~  276 (593)
                      ...++|.+.|...+++
T Consensus       281 ~vn~al~~lyie~~d~  296 (336)
T d1b89a_         281 SVNESLNNLFITEEDY  296 (336)
T ss_dssp             HHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCcchh
Confidence            4455555555555553

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.96  E-value=0.79  Score=45.71  Aligned_cols=99  Identities=9%  Similarity=-0.033  Sum_probs=65.4

Q ss_pred             ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684          169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV  247 (593)
Q Consensus       169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l  247 (593)
                      |+.++|...+.......  | ..++..+...+...|++++|...|++..+  +.|+ ...|+.+...|...|+..+|...
T Consensus       134 ~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~  208 (497)
T d1ya0a1         134 THTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFY  208 (497)
T ss_dssp             ---------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence            46666666555543211  1 24677778888888899999998888877  3466 46888888888889999888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684          248 DAHMGESGVVPEEPELSALLKLSVDA  273 (593)
Q Consensus       248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~  273 (593)
                      |.+...... |...++..|...+.+.
T Consensus       209 y~ral~~~~-~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         209 YCRSIAVKF-PFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHSSSB-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCC-CCHHHHHHHHHHHHHh
Confidence            888776443 5667777777777553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=86.39  E-value=6  Score=30.72  Aligned_cols=111  Identities=8%  Similarity=-0.044  Sum_probs=77.7

Q ss_pred             cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCChhHHH
Q 007684          170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----LGNTDKAY  245 (593)
Q Consensus       170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~  245 (593)
                      +.++|++.|++.-+.|- +  ..+..|.  .....+.++|++++++..+.|. |  ..+..|-..|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~-~--~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACELNS-G--NGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHTTC-H--HHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhcccc-h--hhhhhHHHhhhhccccchhhHHHH
Confidence            78999999999988873 2  2233333  2345688999999999988764 2  344445555544    45788999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHccC
Q 007684          246 EVDAHMGESGVVPEEPELSALLKLSVD----AKKVDKVYEILHRLRTLVR  291 (593)
Q Consensus       246 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~a~~~l~~m~~~~~  291 (593)
                      ++|+...+.|.   ......|-..|..    ..+.++|.++|++..+.|.
T Consensus        80 ~~~~~aa~~g~---~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          80 QYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhhccCc---chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            99999988773   4445556666654    3478899999998877554

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.34  E-value=2.6  Score=30.82  Aligned_cols=75  Identities=8%  Similarity=0.034  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHH
Q 007684          105 GVLRHKLDMCSKRGDVFEALRLYDDARSN-----GITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF  178 (593)
Q Consensus       105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~  178 (593)
                      ..+-.+-..+.+.|++++|...|++..+.     ...++ ..+++.|-.++.+.                |++++|++.|
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~----------------g~~~~A~~~y   69 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ----------------GDLDKALLLT   69 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT----------------TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhc----------------CChHHHHHHH
Confidence            34446778899999999999999987654     12233 34566666666665                6999999999


Q ss_pred             HHHHhCCCCCCHHHHHHH
Q 007684          179 QQMITDKVDPNEATFTSV  196 (593)
Q Consensus       179 ~~M~~~g~~p~~~ty~~l  196 (593)
                      ++..+.. +-+..+++++
T Consensus        70 ~~aL~l~-P~~~~a~~Nl   86 (95)
T d1tjca_          70 KKLLELD-PEHQRANGNL   86 (95)
T ss_dssp             HHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHhC-cCCHHHHHHH
Confidence            9998865 4445566665

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=81.08  E-value=10  Score=29.36  Aligned_cols=139  Identities=9%  Similarity=0.007  Sum_probs=91.9

Q ss_pred             HHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-------CCCCCCCCCcccccccHHHHHHHHH
Q 007684          109 HKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG-------SESSENGDRENDSNLGLKRGFEIFQ  179 (593)
Q Consensus       109 ~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~-------~~~~~~~~~~~~~~g~~~~a~~l~~  179 (593)
                      .||++  +.-.|.+++..+++.+.....   +..-||-.|.-....-+       .+..+.+.| ..+++++......+-
T Consensus         5 kLmeAKk~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FD-ls~C~Nlk~vv~C~~   80 (161)
T d1wy6a1           5 KLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD-LDKCQNLKSVVECGV   80 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC-GGGCSCTHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcC-chhhhcHHHHHHHHH
Confidence            44544  556789999999998876541   44555555542222100       000001111 234566666666665


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684          180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV  257 (593)
Q Consensus       180 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~  257 (593)
                      .+-    . +..-+...++.....|+-|.-.++++.+.+.+ .|+....-.+..||.+.|...+|-+++.+.-+.|++
T Consensus        81 ~~n----~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          81 INN----T-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HTT----C-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             Hhc----c-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            544    2 33446777889999999999999999977644 477777777899999999999999999999888864