Citrus Sinensis ID: 007691

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590---
Protein Sequence
MGRPHILFMLILFLVLPGCQSWGWFSSGSSAEKTQQSDYPRDISNGFVAEFSMKGLHNEKGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSWDTNSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATRYDLRPRRQ
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHccHHHHccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHcHHcccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHccHHccHHcccccccccEEcHHHccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGRPHILFMLILFLVlpgcqswgwfssgssaektqqsdyprdisngFVAEFSMkglhnekgKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHlsdcfqkdsgrpafpncdqkSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADnigsmagdslDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSLSIFIIYMLTstkqtytvrprlYIGLCLTFLIEVVTfrfttydieqqtwivSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINgmerdkeelswdtnseidwsswvdtdlqeevddyedpnyivpeevgenwittsslatrydlrprrq
Flexible Loop (DISEMBL)
MGRPHILFMLILFLVLPGCQSWGWFSSGSSAEKTQQSDYPRDISNGFVAEFSMKGLHNEKGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKeiaasqtelqeGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELswdtnseidwsswVDTDLQEEVDDYEdpnyivpeevgenwittsslatrydlrprrq
Low Complexity Region (SEG)
MGRPHILFMLILFLVLPGCQSWGWFSSGSSAEKTQQSDYPRDISNGFVAEFSMKGLHNEKGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDeaieiekeiskaGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHkqqeellkrqeqlqeVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAffiyslsifiiyMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSWDTNSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATRYDLRPRRQ
Disordered region (IsUnstruct)
****HILFMLILFLVLPGCQSWGWFS********************FVAEF************LVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEII***************************VAQTAKGVRDLMDILSRHSEVVY**************************GMATLIDAYSNLGKEV**********************************************************************************************************F*****ILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSWDTNSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLAT*********
Disordered Region (DISOPRED)
****HIL*MLILFLVLPGCQSWGW****************************************************ACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFP**DQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQL*******************************************************************************************************************************************************************************************************************************************************SMFIALDKLFALHNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVL*****************NSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLAT**DL*****
Disordered Region (DISEMBL)
MGRPHILFMLILFLVLPGCQSWGWFS************YPRDISNGFVAEFSMKGLHNEKGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMER********TNSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATRYDLRPRRQ
Disordered Region (DISPRO)
**RPHILFMLILFLVLPGCQSWGWF******************SNGFVAEFSMKGLHNEKGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSWDTNSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLAT*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRPHILFMLILFLVLPGCQSWGWFSSGSSAEKTQQSDYPRDISNGFVAEFSMKGLHNEKGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLxxxxxxxxxxxxxxxxxxxxxSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSWDTNSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATRYDLRPRRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	593	2.2.26 [Sep-21-2011]
Q681K7	593	Protein GAMETE EXPRESSED	yes	no	0.954	0.954	0.563	1e-176

>sp|Q681K7|GEX1_ARATH Protein GAMETE EXPRESSED 1 OS=Arabidopsis thaliana GN=GEX1 PE=1 SV=1

 Score =  619 bits (1597), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 325/577 (56%), Positives = 428/577 (74%), Gaps = 11/577 (1%)

Query: 19  CQSWGWFSSGSS-AEKTQQSDYPRDISNGFVAEFSMKGLHNEKGKQLVEDAKRRLIGSNA 77
           C SWGWFSS SS AE    S + R   +    +FSM+   ++K  Q++E+   +L+G  +
Sbjct: 24  CHSWGWFSSSSSSAEDPYSSSFSRSRKSN--PDFSMEVFSDQKAVQVLEN---KLVGLTS 78

Query: 78  CWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQKSAMINCLKKID 137
           CWQNAY +L AGC E IA EEKR RFAW+LSDCF KDSGRPAFP C  +S M++CLKK+D
Sbjct: 79  CWQNAYSYLLAGCKETIATEEKRKRFAWYLSDCFIKDSGRPAFPTCKDESVMMSCLKKLD 138

Query: 138 DEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQ 197
           D EHKIYL FLLETN+IC QLQ++ F+ E ERLVNELK +A YTE KL+I+E KSD L+Q
Sbjct: 139 DHEHKIYLDFLLETNTICQQLQSNAFKNEIERLVNELKNTAQYTEDKLDILESKSDALIQ 198

Query: 198 SSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVR 257
           +S+ IHDSL S+D RVQNVA     +   +  LS+ +  +  + K IA SQ  L++GQV+
Sbjct: 199 TSSMIHDSLGSLDVRVQNVASVTNTLETSVSGLSQQTVEISQEQKNIAESQLALRDGQVK 258

Query: 258 IKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGS 317
           +KE L +GM   +DAY+N+ + V+ L+ +  +IE EIS  G+ + + M  LQ   D+IG+
Sbjct: 259 MKETLKDGMDMFLDAYTNIQEGVDKLKSDTEQIEVEISVLGNNLSTKMIDLQSTTDDIGT 318

Query: 318 MAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQE 377
               SLDKQQ+LL GQ+ AL+ +Q LT+FQSEAL ESRNTLQ L E+  +QQE+L KRQE
Sbjct: 319 KTRSSLDKQQKLLDGQTVALDGIQFLTRFQSEALQESRNTLQRLKEFSQEQQEDLAKRQE 378

Query: 378 QLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSLS 437
           +LQEVHDHLF+NS+S+L AQ AFE+KQA+MF+ALDKLFALHNAMLLESR+IKAF IY LS
Sbjct: 379 KLQEVHDHLFENSKSMLEAQVAFEAKQANMFVALDKLFALHNAMLLESRVIKAFVIYFLS 438

Query: 438 IFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWIVSCDRSLFVLLA 497
           IF+IYM TSTKQTY +RPRLYIGLC+T  +EV + R+   D E+Q W+++  RSLF LLA
Sbjct: 439 IFVIYMFTSTKQTYIIRPRLYIGLCVTLALEVASLRYVN-DTERQAWMINLIRSLFALLA 497

Query: 498 AIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSW--DTNSEIDWSSWVDTDLQ 555
           + QLLH+  +YRDYE+LN+Q+L  +++K+N M+  K+ELS+  DT SE+DW+SWVDTDL 
Sbjct: 498 SAQLLHAALSYRDYEVLNHQILLRLVDKVNDMQ-SKKELSYDEDTESEVDWTSWVDTDLT 556

Query: 556 EEVDDYEDPNYIVPEEVGENWITTSSLATR-YDLRPR 591
           ++ D+  DP+Y +P  + +N +TTSSL  R Y+ RPR
Sbjct: 557 DDDDNLADPDYKIPLLIKDNPVTTSSLTRRLYNFRPR 593

Has a dual function during gametophyte development and early embryogenesis. Required for correct pollen maturation.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	593
255585703	603	conserved hypothetical protein [Ricinus	0.979	0.963	0.624	0.0
359485795	605	PREDICTED: uncharacterized protein LOC10	0.988	0.968	0.608	0.0
449484471	588	PREDICTED: protein GAMETE EXPRESSED 1-li	0.978	0.986	0.604	0.0
296084973	547	unnamed protein product [Vitis vinifera]	0.908	0.985	0.632	0.0
449469316	585	PREDICTED: protein GAMETE EXPRESSED 1-li	0.973	0.986	0.592	0.0
356513862	591	PREDICTED: uncharacterized protein LOC10	0.967	0.971	0.576	0.0
356537888	593	PREDICTED: uncharacterized protein LOC10	0.949	0.949	0.578	0.0
356569389	593	PREDICTED: uncharacterized protein LOC10	0.974	0.974	0.569	0.0
357501213	581	hypothetical protein MTR_6g091980 [Medic	0.971	0.991	0.552	0.0
297796425	596	hypothetical protein ARALYDRAFT_495632 [	0.993	0.988	0.557	0.0

>gi|255585703|ref|XP_002533535.1| conserved hypothetical protein [Ricinus communis] gi|223526602|gb|EEF28852.1| conserved hypothetical protein [Ricinus communis]

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/596 (62%), Positives = 470/596 (78%), Gaps = 15/596 (2%)

Query: 5   HILFMLILFL-VLPGCQSWGWF------SSGSSAEKTQQSDYPRDISNGFVAEFSMKGLH 57
           H+LF+LIL   V P CQSWGWF       S S+A    Q +YP   S   VAEFS+ GL 
Sbjct: 6   HVLFLLILMSNVTPRCQSWGWFFSSTENPSSSAAHNPSQRNYPFASS---VAEFSIDGLK 62

Query: 58  NEKGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGR 117
           ++KG +L+E+AK++L  SN+CWQNAY  LFAGCS+I+A+EEKR + AWHLSDCFQKDSGR
Sbjct: 63  DDKGMKLLENAKKKLDISNSCWQNAYHQLFAGCSQILAVEEKRKQLAWHLSDCFQKDSGR 122

Query: 118 PAFPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKS 177
             FP CD KS M+NCLKK+ D EHK+YL FLLETN+ICYQLQAH F+++ ERLVN+LK S
Sbjct: 123 LPFPYCDTKSPMLNCLKKLSDNEHKVYLEFLLETNAICYQLQAHSFKHKMERLVNDLKDS 182

Query: 178 ADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVV 237
           A++T  +L+II E++++L +SS+QIH++L SID +VQNVAQT K V+  M +LS+HSE V
Sbjct: 183 AEFTTDQLQIIHERTESLSKSSDQIHETLSSIDFQVQNVAQTTKDVKGNMVVLSQHSEAV 242

Query: 238 YNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKA 297
           Y QSKEIA SQ+EL+E QVR+ +KL EG+AT+ DAY+NLG++V+NLR+E +EIEK+I   
Sbjct: 243 YKQSKEIANSQSELREEQVRMNDKLKEGIATVHDAYTNLGQQVDNLRNETVEIEKQIGAV 302

Query: 298 GDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNT 357
           G+ M   M+ LQ  AD I   AG SLDKQQ L+ GQSTAL+ LQLLT+FQSEAL ESR+T
Sbjct: 303 GETMSLRMQNLQNSADEIEDKAGKSLDKQQLLIDGQSTALKGLQLLTEFQSEALEESRST 362

Query: 358 LQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFAL 417
           LQ   EYG +QQEELL++QEQ+Q+VHDHL +NS+SILAAQEAFESKQASMFIALDKLFAL
Sbjct: 363 LQSFTEYGRRQQEELLQQQEQIQQVHDHLIENSKSILAAQEAFESKQASMFIALDKLFAL 422

Query: 418 HNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTY 477
           HNAMLLESR+IKAF IY L +FIIYMLTSTKQTY +R RLY+GLC TFLIEV   R T  
Sbjct: 423 HNAMLLESRIIKAFVIYFLLMFIIYMLTSTKQTYAIRARLYVGLCTTFLIEVAILRLTAD 482

Query: 478 DIEQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELS 537
           +IEQQTW+ +  R L+ L   IQLLH+IFTY+D+E+LN+Q+L T ++K+N M+R KEEL 
Sbjct: 483 NIEQQTWLANLVRLLYALAVFIQLLHAIFTYKDFEVLNHQLLLTAVDKLNAMQRTKEELL 542

Query: 538 WDTNSEIDWSSWVDTDLQEEVDDYEDPNYIVP--EEVGENWITTSSLATRYDLRPR 591
           W+++SE++WSS+V+ +L +EVD  +DP+YI+P  EEV EN IT   L  +YDLR R
Sbjct: 543 WESDSELNWSSFVENELPDEVDKLQDPDYIMPEEEEVAENSIT---LPRKYDLRHR 595

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485795|ref|XP_002271238.2| PREDICTED: uncharacterized protein LOC100247755 [Vitis vinifera]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/592 (60%), Positives = 462/592 (78%), Gaps = 6/592 (1%)

Query: 6   ILFMLILFLVLPGCQSWGWFSSGSSAEK-TQQSDYPRDISNGFVAEFSMKGLHNEKGKQL 64
           ++FML+L  +   C  W +F SG +    T+     + IS   +AEFSM+ L+++KG + 
Sbjct: 11  VVFMLVLLSLPHDCMPWNFFGSGKTESPFTESYSKAKAISGDVIAEFSMEALNDQKGIER 70

Query: 65  VEDAKRRLIG--SNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPN 122
           V+ A+R+L G  SN CWQNAY  LFAGCSEII  ++KR RFAW LSDCFQK+SG  AFP+
Sbjct: 71  VDKARRKLAGGGSNTCWQNAYESLFAGCSEIIPDDKKRRRFAWLLSDCFQKESGGHAFPS 130

Query: 123 CDQKSA--MINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADY 180
           CD +S   +  CL+K+D+E    YLAF LETNSIC+ LQA  F+  TERLVN+L+KSA +
Sbjct: 131 CDTRSDSDVKKCLQKLDEEARSTYLAFFLETNSICHHLQADAFKRGTERLVNDLRKSAQF 190

Query: 181 TEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQ 240
            E KLE IEE+S+ LLQSS +IHDSL  ID + Q VA+ +K V D +D + +HSE V+ Q
Sbjct: 191 AEEKLENIEERSENLLQSSKEIHDSLTWIDLQTQQVARASKNVEDNIDTVLKHSEAVFEQ 250

Query: 241 SKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDA 300
           SK IAASQ ELQEGQV++KEK +EGMA +  +Y+NLG+E++ LR++A+EIE EIS+ G+ 
Sbjct: 251 SKGIAASQLELQEGQVKMKEKFEEGMAMIQGSYNNLGQEIDKLRNDAVEIENEISRVGNT 310

Query: 301 MFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQE 360
           M   ME LQ +AD+IG +AG SLDKQ+QLL GQSTALE LQ LTKFQS+AL ESR TLQ 
Sbjct: 311 MTLKMENLQSRADDIGEVAGQSLDKQKQLLDGQSTALEGLQFLTKFQSQALEESRATLQR 370

Query: 361 LAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNA 420
           LAE+GHKQQEELL+RQE LQ+ HDHL +NS+S+LAAQEAFESKQASMFIALDKLF LHNA
Sbjct: 371 LAEFGHKQQEELLQRQEILQQAHDHLVENSKSMLAAQEAFESKQASMFIALDKLFTLHNA 430

Query: 421 MLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIE 480
           MLLESR IKAFFIYSLSIFI+YM TSTKQTYTVRPRLYIGLC TFLIE    RF+TYDI 
Sbjct: 431 MLLESRSIKAFFIYSLSIFILYMFTSTKQTYTVRPRLYIGLCATFLIEFAILRFSTYDIA 490

Query: 481 QQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSWDT 540
           QQT I++  RS+F ++++IQLLH+I T+RDYE+LN+QML T++EK+NGM+R+ +  +   
Sbjct: 491 QQTQIINMIRSIFAIVSSIQLLHAICTFRDYEVLNHQMLLTLMEKVNGMQRNIDYSACVM 550

Query: 541 -NSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATRYDLRPR 591
            +S++DWS+W+DTD+ E+VD  +DP++I+ EE+GEN ITT+S+  +Y+LR R
Sbjct: 551 EDSDVDWSTWIDTDMPEDVDIVKDPDFILQEEIGENSITTTSITRKYNLRNR 602

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484471|ref|XP_004156892.1| PREDICTED: protein GAMETE EXPRESSED 1-like [Cucumis sativus]

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/587 (60%), Positives = 470/587 (80%), Gaps = 7/587 (1%)

Query: 6   ILFMLILFLVLPGCQSWGWFSSGSSAEKTQQSDYPRDISNGFVAEFSMKGLHNEKGKQLV 65
           ILF++IL   LP C+SW WFSS SS+  +  S + R +  G  AEF+++G  ++KG + +
Sbjct: 4   ILFLVILLFALPNCESWNWFSSSSSSSSSASS-FNR-VEGGSGAEFAIEGFDDQKGVRRI 61

Query: 66  EDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQ 125
           E+AK +L  SN+CW++AYRHLFAGCSEI A +EKRSRFAWHLSDCFQKDSGRP+FPNCD 
Sbjct: 62  ENAKNKLTVSNSCWESAYRHLFAGCSEIFAADEKRSRFAWHLSDCFQKDSGRPSFPNCDA 121

Query: 126 KSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKL 185
           KS M  CLK +++ EH+IYL F LETNSIC+QLQA+ F+ +TERLVNELK+S++  E KL
Sbjct: 122 KSPMAKCLKYLNEHEHRIYLEFYLETNSICHQLQANAFKLDTERLVNELKRSSEAAEGKL 181

Query: 186 EIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIA 245
           E IEEKS++LLQSS +I DSL+S   ++Q +AQT++ + D M I+ +HSE VY QSK+I 
Sbjct: 182 ESIEEKSESLLQSSYEISDSLNSTGTQIQKMAQTSRKLEDHMGIVLKHSEAVYEQSKKIE 241

Query: 246 ASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSM 305
            SQ ELQEGQ+++++ L+EGM  L D+Y+NL +E++NLR E IEIEKEI+K GD+M   M
Sbjct: 242 TSQLELQEGQLKLRKTLEEGMEMLQDSYTNLDQEMDNLRVETIEIEKEITKVGDSMSLKM 301

Query: 306 EQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYG 365
           + LQ  AD+IG+MAG SLDKQQ+LL  QSTAL  L  L+K QSEAL ESRN LQ+LAEYG
Sbjct: 302 KYLQSTADDIGNMAGLSLDKQQELLDAQSTALNGLHSLSKVQSEALEESRNKLQQLAEYG 361

Query: 366 HKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLES 425
           HKQQEELL+RQ QLQ++HD L  NS+SIL AQ+ FESKQASMF+AL+KLF LHNAMLLES
Sbjct: 362 HKQQEELLQRQGQLQQLHDRLMDNSKSILEAQQIFESKQASMFVALEKLFTLHNAMLLES 421

Query: 426 RMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWI 485
           R+IK FF+Y  +IFIIYM +STKQTYTVRP LYI LC+TF IEV   RF  +++E++TWI
Sbjct: 422 RLIKVFFVYFTTIFIIYMFSSTKQTYTVRPWLYIELCVTFFIEVAILRFEMFNMEEKTWI 481

Query: 486 VSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSW-DTNSEI 544
           V+  R++F+L+A++QLL+++ TYRDY++LN+ ML  ++E+INGM+  + +LSW D++SE+
Sbjct: 482 VNLLRTVFLLVASLQLLYAVCTYRDYDVLNHHMLLMLMERINGMQ-TQNKLSWDDSDSEV 540

Query: 545 DWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATRYDLRPR 591
           DW+SW+DT+L E+V   EDP++++PE+VGEN ITT+S + RY+LR R
Sbjct: 541 DWTSWIDTELSEDV---EDPDFVLPEQVGENSITTASTSRRYNLRHR 584

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084973|emb|CBI28388.3| unnamed protein product [Vitis vinifera]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/544 (63%), Positives = 436/544 (80%), Gaps = 5/544 (0%)

Query: 53  MKGLHNEKGKQLVEDAKRRLIG--SNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDC 110
           M+ L+++KG + V+ A+R+L G  SN CWQNAY  LFAGCSEII  ++KR RFAW LSDC
Sbjct: 1   MEALNDQKGIERVDKARRKLAGGGSNTCWQNAYESLFAGCSEIIPDDKKRRRFAWLLSDC 60

Query: 111 FQKDSGRPAFPNCDQKSA--MINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETE 168
           FQK+SG  AFP+CD +S   +  CL+K+D+E    YLAF LETNSIC+ LQA  F+  TE
Sbjct: 61  FQKESGGHAFPSCDTRSDSDVKKCLQKLDEEARSTYLAFFLETNSICHHLQADAFKRGTE 120

Query: 169 RLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMD 228
           RLVN+L+KSA + E KLE IEE+S+ LLQSS +IHDSL  ID + Q VA+ +K V D +D
Sbjct: 121 RLVNDLRKSAQFAEEKLENIEERSENLLQSSKEIHDSLTWIDLQTQQVARASKNVEDNID 180

Query: 229 ILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAI 288
            + +HSE V+ QSK IAASQ ELQEGQV++KEK +EGMA +  +Y+NLG+E++ LR++A+
Sbjct: 181 TVLKHSEAVFEQSKGIAASQLELQEGQVKMKEKFEEGMAMIQGSYNNLGQEIDKLRNDAV 240

Query: 289 EIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQS 348
           EIE EIS+ G+ M   ME LQ +AD+IG +AG SLDKQ+QLL GQSTALE LQ LTKFQS
Sbjct: 241 EIENEISRVGNTMTLKMENLQSRADDIGEVAGQSLDKQKQLLDGQSTALEGLQFLTKFQS 300

Query: 349 EALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMF 408
           +AL ESR TLQ LAE+GHKQQEELL+RQE LQ+ HDHL +NS+S+LAAQEAFESKQASMF
Sbjct: 301 QALEESRATLQRLAEFGHKQQEELLQRQEILQQAHDHLVENSKSMLAAQEAFESKQASMF 360

Query: 409 IALDKLFALHNAMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIE 468
           IALDKLF LHNAMLLESR IKAFFIYSLSIFI+YM TSTKQTYTVRPRLYIGLC TFLIE
Sbjct: 361 IALDKLFTLHNAMLLESRSIKAFFIYSLSIFILYMFTSTKQTYTVRPRLYIGLCATFLIE 420

Query: 469 VVTFRFTTYDIEQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKING 528
               RF+TYDI QQT I++  RS+F ++++IQLLH+I T+RDYE+LN+QML T++EK+NG
Sbjct: 421 FAILRFSTYDIAQQTQIINMIRSIFAIVSSIQLLHAICTFRDYEVLNHQMLLTLMEKVNG 480

Query: 529 MERDKE-ELSWDTNSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATRYD 587
           M+R+ +       +S++DWS+W+DTD+ E+VD  +DP++I+ EE+GEN ITT+S+  +Y+
Sbjct: 481 MQRNIDYSACVMEDSDVDWSTWIDTDMPEDVDIVKDPDFILQEEIGENSITTTSITRKYN 540

Query: 588 LRPR 591
           LR R
Sbjct: 541 LRNR 544

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469316|ref|XP_004152367.1| PREDICTED: protein GAMETE EXPRESSED 1-like [Cucumis sativus]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/587 (59%), Positives = 462/587 (78%), Gaps = 10/587 (1%)

Query: 6   ILFMLILFLVLPGCQSWGWFSSGSSAEKTQQSDYPRDISNGFVAEFSMKGLHNEKGKQLV 65
           ILF++IL   LP C+S         +  +  +     +  G  AEF+++G  ++KG + +
Sbjct: 4   ILFLVILLFALPNCES-----WNWFSSSSSSASSFNRVEGGSGAEFAIEGFDDQKGVRRI 58

Query: 66  EDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQ 125
           E+AK +L  SN+CW++AYRHLFAGCSEI A +EKRSRFAWHLSDCFQKDSGRP+FPNCD 
Sbjct: 59  ENAKNKLTVSNSCWESAYRHLFAGCSEIFAADEKRSRFAWHLSDCFQKDSGRPSFPNCDA 118

Query: 126 KSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKL 185
           KS M  CLK +++ EH+IYL F LETNSIC+QLQA+ F+ +TERLVNELK+S++  E KL
Sbjct: 119 KSPMAKCLKYLNEHEHRIYLEFYLETNSICHQLQANAFKLDTERLVNELKRSSEAAEGKL 178

Query: 186 EIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIA 245
           E IEEKS+TLLQSS +I DSL+S   ++Q +AQT++ + D M I+ +HSE VY QSK+I 
Sbjct: 179 ESIEEKSETLLQSSYEISDSLNSTGTQIQKMAQTSRKLEDHMGIVLKHSEAVYEQSKKIE 238

Query: 246 ASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSM 305
            SQ ELQEGQ+++++ L+EGM  L D+Y++LG+E++NLR E IEIEKEI+K GD+M   M
Sbjct: 239 TSQLELQEGQLKLRKTLEEGMEMLQDSYTDLGQEMDNLRVETIEIEKEITKVGDSMSLKM 298

Query: 306 EQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYG 365
           + LQ  AD+IG+MAG SLDKQQ+LL  QSTAL  L  L+K QSEAL ESRN LQ+LAEYG
Sbjct: 299 KYLQSTADDIGNMAGLSLDKQQELLDAQSTALNGLHSLSKVQSEALEESRNKLQQLAEYG 358

Query: 366 HKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLES 425
           HKQQEELL+RQ QLQ++HD L  NS+SIL AQ+ FESKQASMF+AL+KLF LHNAMLLES
Sbjct: 359 HKQQEELLQRQGQLQQLHDRLMDNSKSILEAQQIFESKQASMFVALEKLFTLHNAMLLES 418

Query: 426 RMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWI 485
           R+IK FF+Y  +IFIIYM +STKQTYTVRP LYI LC+TF IEV   RF  +++E++TWI
Sbjct: 419 RLIKVFFVYFTTIFIIYMFSSTKQTYTVRPWLYIELCVTFFIEVAILRFEMFNMEEKTWI 478

Query: 486 VSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSW-DTNSEI 544
           V+  R++F+L+A++QLL+++ TYRDY++LN+ ML  ++E+INGM+  + +LSW D++SE+
Sbjct: 479 VNLLRTVFLLVASLQLLYAVCTYRDYDVLNHHMLLMLMERINGMQ-TQNKLSWDDSDSEV 537

Query: 545 DWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATRYDLRPR 591
           DW+SW+DT+L E+V   EDP++++PEEVGEN ITT+S + RY+LR R
Sbjct: 538 DWTSWIDTELSEDV---EDPDFVLPEEVGENSITTASTSRRYNLRHR 581

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513862|ref|XP_003525627.1| PREDICTED: uncharacterized protein LOC100792191 [Glycine max]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/588 (57%), Positives = 442/588 (75%), Gaps = 14/588 (2%)

Query: 7   LFMLILFLVLPGCQSWGWFSSG---SSAEKTQQSDYPRDISNGFVAEFSMKGLHNEKGKQ 63
           L +LILF  L   +SWGWFSS     S +KTQ  ++      G  AEFS+   ++ KG +
Sbjct: 7   LLVLILFSFLLRGESWGWFSSSKETPSGDKTQAGNFK-----GSSAEFSVDSFNDHKGVK 61

Query: 64  LVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNC 123
           L+++AK+++I SN+CWQNAY+HLFAGCSEI+AI+EKRSR AWHLSDCFQ+DSGR  FP+C
Sbjct: 62  LIQNAKKKMISSNSCWQNAYQHLFAGCSEILAIDEKRSRLAWHLSDCFQRDSGRSPFPHC 121

Query: 124 DQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEH 183
           + KS++  C + +DD  HK+YL F LETN+ICYQLQAH F+YETERLV ELK SA Y E 
Sbjct: 122 EPKSSIAVCSRSLDDLAHKVYLEFYLETNTICYQLQAHAFKYETERLVTELKTSAQYVED 181

Query: 184 KLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKE 243
           KL+ IEEKS+ LLQ S QIHDSL+S+D   + VAQTAK +   +D +  HS  VY Q+ +
Sbjct: 182 KLDSIEEKSEHLLQGSRQIHDSLNSLDSHTKQVAQTAKNLEGHIDSVLTHSRSVYEQTTK 241

Query: 244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFS 303
           IA SQ +L+EGQ  +K  L++G+A L D+Y+ LGKE+  LR+EAIEIE E+ K GDAM S
Sbjct: 242 IALSQIQLKEGQENMKRSLEDGVAMLKDSYNYLGKEIEKLRNEAIEIENEVIKVGDAMSS 301

Query: 304 SMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAE 363
            M+ LQ KA++IG+MAG SLDKQQQLL GQSTALE L  LT+FQS+AL ESR TLQ  AE
Sbjct: 302 RMDNLQSKAEDIGNMAGISLDKQQQLLDGQSTALEGLNSLTEFQSKALEESRKTLQYFAE 361

Query: 364 YGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLL 423
           YGH+Q EEL++RQ+Q+Q  HD L +NSR IL++QE+FESKQASMF+ LD++FAL N +LL
Sbjct: 362 YGHRQHEELIQRQQQIQGFHDRLMENSREILSSQESFESKQASMFVVLDRIFALQNTLLL 421

Query: 424 ESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQT 483
           ESRMIKAFF+YS+ IF+I+MLTSTKQTY +RP LYI LC T   EV+  R T+ +IE QT
Sbjct: 422 ESRMIKAFFVYSILIFVIFMLTSTKQTYNIRPFLYIELCATLFAEVLIIRLTSDNIEHQT 481

Query: 484 WIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSW--DTN 541
            I++  R  F++ A +QLLH+IFTY++YE LN+QML T++ K+N M+++K ELSW  DT 
Sbjct: 482 SIINIARLFFMVTALVQLLHAIFTYKNYETLNHQMLLTLINKVNSMQKEK-ELSWDLDTT 540

Query: 542 SEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATRYDLR 589
              DWS W+D DL ++V+  +DP+Y++P+ V EN IT +     Y+LR
Sbjct: 541 DYEDWSEWIDADLPDDVNYLDDPDYMLPQVVAENSITVTK---NYNLR 585

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537888|ref|XP_003537438.1| PREDICTED: uncharacterized protein LOC100814482 [Glycine max]

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/574 (57%), Positives = 438/574 (76%), Gaps = 11/574 (1%)

Query: 20  QSWGWFSSGSSAEKTQQSDYPRDISNGF---VAEFSMKGLHNEKGKQLVEDAKRRLIGSN 76
           +SWGWFSS   +++T  SD        F    AEFS++  ++ KG +L+E+AK+++I SN
Sbjct: 21  ESWGWFSS---SQETPSSDKAHANEGNFRVPSAEFSIESFNDHKGVKLIENAKKKMISSN 77

Query: 77  ACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPNCDQKSAMINCLKKI 136
           +CWQNAY+HLFAGCSEI+A++EKRSR AWHLSDCFQ+DSGR  FP+CD KS++  C + +
Sbjct: 78  SCWQNAYQHLFAGCSEILAVDEKRSRLAWHLSDCFQRDSGRSPFPHCDPKSSIAVCSRSL 137

Query: 137 DDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLL 196
           DD  HK+YL F LETN+ICYQLQAH F+YETERLV ELK SA Y E KL+ IEEKS+ LL
Sbjct: 138 DDLAHKVYLEFYLETNTICYQLQAHAFKYETERLVTELKNSAQYVEDKLDSIEEKSEHLL 197

Query: 197 QSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQV 256
             S QIHDSLDSI    + VAQTAK +   +D +  HS  VY+Q+ +IA SQT+++EGQ 
Sbjct: 198 HGSRQIHDSLDSIGSHTKQVAQTAKNLEGHIDSVLTHSRSVYDQTTKIALSQTQIKEGQE 257

Query: 257 RIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIG 316
            +K  L +G+A L D+Y+ LGKE+  +R+EAIEIE E+ K G+AM S M+ LQ KA +IG
Sbjct: 258 NMKRSLKDGVAMLKDSYNYLGKEIEKIRNEAIEIENEVIKVGNAMSSRMDNLQSKAGDIG 317

Query: 317 SMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQ 376
           +M G SLDKQQQLL GQSTALE L  LT+FQ++AL ESR TLQ  AEYGH+Q EEL++RQ
Sbjct: 318 NMTGISLDKQQQLLDGQSTALEGLNSLTEFQAKALEESRKTLQYFAEYGHRQHEELIQRQ 377

Query: 377 EQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAMLLESRMIKAFFIYSL 436
           +Q++  HD L +NSR IL++QE+FESKQASMF+ LD++FAL N +LLESRMIKAFF+YS+
Sbjct: 378 QQIKGFHDRLMENSREILSSQESFESKQASMFVVLDRIFALQNTLLLESRMIKAFFVYSI 437

Query: 437 SIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQTWIVSCDRSLFVLL 496
            IF+I+MLTSTKQTY +RP LYI LC T ++EV+  R T+ +IE QTWI+S  R  F++ 
Sbjct: 438 LIFVIFMLTSTKQTYNIRPFLYIELCATLVVEVLIIRLTSDNIEHQTWIISMVRLFFMVA 497

Query: 497 AAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSWDTNSEI-DWSSWVDTDLQ 555
           A +QLLH+IFTY++YE LN+QML T++ K+N M+++K ELSWD +S+  DWS WVD DL 
Sbjct: 498 ALVQLLHAIFTYKNYETLNHQMLLTLINKVNSMQKEK-ELSWDLDSDYGDWSEWVDADLP 556

Query: 556 EEVDDYEDPNYIVPEEVGENWITTSSLATRYDLR 589
           ++V+  +DP+YI+P+EV EN +T   +   Y+LR
Sbjct: 557 DDVNCLDDPDYILPQEVAENSMT---VKKNYNLR 587

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569389|ref|XP_003552884.1| PREDICTED: uncharacterized protein LOC100814301 [Glycine max]

 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/590 (56%), Positives = 445/590 (75%), Gaps = 12/590 (2%)

Query: 6   ILFMLILFLVLPGCQSWGWFSSG---SSAEKTQQSDYPRDISNGFVAEFSMKGLHNEKGK 62
           ++F+L+ FL L G +SWGWFSS     S++KT  ++       G  AEFS++  ++ KG 
Sbjct: 8   LVFILLSFL-LRG-ESWGWFSSSKETPSSDKTHTTNEGN--FRGSSAEFSIESFNDHKGV 63

Query: 63  QLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPAFPN 122
           +L+E+AK+++I SN+CWQNAY+HLFAGCSEI+A++EKRSR AWHLSDCFQ+DSGR  FP+
Sbjct: 64  KLIENAKKKMISSNSCWQNAYQHLFAGCSEILAVDEKRSRLAWHLSDCFQRDSGRSPFPH 123

Query: 123 CDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTE 182
           CD KS++  C + +DD  HK+YL F LETN+ICYQLQ H F+YETERLV ELK SA Y E
Sbjct: 124 CDPKSSIAVCSRSLDDLAHKVYLEFYLETNTICYQLQTHAFKYETERLVTELKSSAQYVE 183

Query: 183 HKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSK 242
            KL+ IEEKS+ LLQ S QIHDSLDSI    + VAQTAK +   +D +  HS+ VY Q+ 
Sbjct: 184 DKLDSIEEKSEHLLQGSRQIHDSLDSIGSHTKQVAQTAKNLEGHIDSVLTHSKSVYEQTT 243

Query: 243 EIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMF 302
           +IA SQT+L+EGQ  +K  L++G+  L D+Y+ LG+E+  LR+EAIEIE E+ K GDAM 
Sbjct: 244 KIALSQTQLKEGQENMKRNLEDGVGMLKDSYNYLGREIEKLRNEAIEIENEVIKVGDAMS 303

Query: 303 SSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELA 362
           S M+ LQ KA++IG+MA  SLDKQQ LL GQS ALE L  LT+ Q++AL ESR TLQ  A
Sbjct: 304 SKMDNLQSKAEDIGNMAEISLDKQQILLDGQSAALEGLNSLTESQAKALEESRKTLQYFA 363

Query: 363 EYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHNAML 422
           EYGH+Q EELL+RQ+Q+Q  HD L +NS+ IL++QE+FESKQASMF+ LD++FAL N +L
Sbjct: 364 EYGHRQHEELLQRQQQIQGFHDRLMENSKEILSSQESFESKQASMFVVLDRIFALQNTLL 423

Query: 423 LESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDIEQQ 482
           LESRMIKAFF+YS+ IF+I+MLTSTKQTY +RP LYI LC T  +EV+  R T  +IE Q
Sbjct: 424 LESRMIKAFFVYSVLIFVIFMLTSTKQTYNIRPFLYIELCATLFVEVLIIRLTGDNIEHQ 483

Query: 483 TWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSWDTNS 542
           TWI++  R  F++ A +QLLH+IFTY++YE LN+QML T++ K+N M+++K ELSWD  +
Sbjct: 484 TWIINMARLFFLVAALVQLLHAIFTYKNYETLNHQMLLTLINKVNSMQKEK-ELSWDLYT 542

Query: 543 EI-DWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATRYDLRPR 591
           +  DWS W+D DL ++V+  +DP+YI+P+EV EN IT +     Y+LR R
Sbjct: 543 DYEDWSEWIDADLPDDVNCLDDPDYILPQEVAENSITVTK---NYNLRNR 589

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357501213|ref|XP_003620895.1| hypothetical protein MTR_6g091980 [Medicago truncatula] gi|355495910|gb|AES77113.1| hypothetical protein MTR_6g091980 [Medicago truncatula]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/596 (55%), Positives = 440/596 (73%), Gaps = 20/596 (3%)

Query: 1   MG-RPHILFMLILFLVLPGCQSWGWFSSGSSAEKTQQSDYPRDISNGFVAEFSMKGLHNE 59
           MG R H+L ++++   L  C+SWGW+SS   +    +S   +    G  AEFS++  ++ 
Sbjct: 1   MGLRVHLLVLILVSFSLR-CESWGWYSSNKESHSNDRSYGNQGTFRGSSAEFSIEAFNDP 59

Query: 60  KGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPA 119
           KG +L+E+AK +++GSN CWQNAY+HLFAGCSEI++ +EKRSR AWHLSDCFQ+DSGR +
Sbjct: 60  KGMKLIENAKNKMVGSNTCWQNAYQHLFAGCSEILSADEKRSRLAWHLSDCFQRDSGRVS 119

Query: 120 FPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSAD 179
           FP+CD K++++ CL+ +DD  HK+YL F LETNSICYQLQ H F++ETERLV ELK SA 
Sbjct: 120 FPHCDTKTSIVTCLRNLDDLAHKVYLEFYLETNSICYQLQTHAFKHETERLVTELKSSAQ 179

Query: 180 YTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYN 239
           Y E KL+ IEEKSD LLQ +              Q VAQT K V   +D++ RHS+ VY 
Sbjct: 180 YVEDKLDSIEEKSDNLLQVT--------------QLVAQTVKNVETHIDVVLRHSKSVYE 225

Query: 240 QSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGD 299
           Q+ +IAASQ++L+EGQ  +K KL++G+A L ++YS LGKE+  LRDEAIEIE E+ K G+
Sbjct: 226 QTTKIAASQSQLEEGQEDMKRKLEDGVALLKESYSYLGKEIEKLRDEAIEIENEVIKVGN 285

Query: 300 AMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQ 359
            M S M  LQ KA++IG+MAG SL+KQQ+LL GQSTAL+ L  L + Q +AL ESR ++Q
Sbjct: 286 TMSSKMNTLQTKAEDIGNMAGVSLEKQQELLDGQSTALKGLNSLNEVQFKALEESRKSVQ 345

Query: 360 ELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHN 419
             +EYGHKQQEELL+RQEQ+Q +HD L +NS+++L+AQE FE+KQA+MF+ALDK+FAL N
Sbjct: 346 YFSEYGHKQQEELLQRQEQMQGLHDRLMENSKTVLSAQETFEAKQATMFVALDKIFALQN 405

Query: 420 AMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDI 479
           AMLLESR+IKAFFIY++SIF+I+MLTSTKQTY VRP LYI LC+   +EV   R T  DI
Sbjct: 406 AMLLESRVIKAFFIYAISIFVIFMLTSTKQTYNVRPLLYIELCVALFVEVFIIRLTNDDI 465

Query: 480 EQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSW- 538
           EQQTWI++  R   ++ A+ QL ++I TYRDYE LN+QML T+L KIN ME+ K+  +W 
Sbjct: 466 EQQTWIINKVRLFLMVAASAQLTYAIVTYRDYERLNHQMLLTLLNKINNMEKLKDS-NWD 524

Query: 539 -DTNSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATRYDLRPRRQ 593
            DT   +DWS  + TDL ++V+  +DP++++PEEV EN IT S+    Y+LR R +
Sbjct: 525 FDTTDYVDWSQLIGTDLPDDVNCLDDPDFVIPEEVAENSITIST-TKNYNLRSRNR 579

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796425|ref|XP_002866097.1| hypothetical protein ARALYDRAFT_495632 [Arabidopsis lyrata subsp. lyrata] gi|297311932|gb|EFH42356.1| hypothetical protein ARALYDRAFT_495632 [Arabidopsis lyrata subsp. lyrata]

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/595 (55%), Positives = 440/595 (73%), Gaps = 6/595 (1%)

Query: 1   MGRPHILFMLILFLVLP-GCQSWGWFSSGSSAEKTQQSDYPRDISNGFVAEFSMKGLHNE 59
           + R  ++F+LI+ L  P  C SWGWFSS SS+            S     +FSM+   ++
Sbjct: 4   LSRKFLMFLLIVLLDSPLTCHSWGWFSSSSSSSAKDTYSSSFSRSYKSNPDFSMEVFSDQ 63

Query: 60  KGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPA 119
           K  ++++DAK +L G N+CWQNAY +LF GC E IA EEKR RFAW+LSDCF KDSGR A
Sbjct: 64  KAVRVLKDAKNKLDGPNSCWQNAYSYLFTGCKETIATEEKRKRFAWYLSDCFIKDSGRTA 123

Query: 120 FPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSAD 179
           FP C  +S M++CLKK+DD EHKIYL FLLETN+IC QLQ++ F++E ERLVNELK +A 
Sbjct: 124 FPTCKDESTMMSCLKKLDDHEHKIYLDFLLETNTICQQLQSYAFKHEIERLVNELKSTAQ 183

Query: 180 YTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYN 239
            TE KL+I+E KSD+L+Q+S+ IHDSL S+D RVQNVA  A  +   +  LS+ +  +  
Sbjct: 184 NTEDKLDILESKSDSLIQTSSMIHDSLGSLDVRVQNVAHVANTLETSVSGLSQQTIEISQ 243

Query: 240 QSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGD 299
           + K IA SQ  L +GQV++KE L +GM    DAY+N+ + V+ L+ +  +IE EIS  G+
Sbjct: 244 EQKNIAESQLALMDGQVKMKETLKDGMEMFSDAYTNIQEGVDKLKSDTKQIEVEISVLGN 303

Query: 300 AMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQ 359
            + + M  LQ   ++IG  AG SL+KQQ+LL GQS AL+ +Q LT+FQSEAL ESRNTLQ
Sbjct: 304 NLSTKMVDLQSTTEDIGIKAGSSLEKQQKLLDGQSVALDGIQFLTRFQSEALQESRNTLQ 363

Query: 360 ELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHN 419
            L E+  +QQE+L KRQE+LQEVHDHLF+NS+S+L AQEAFE+KQA+MF+ALDKLFALHN
Sbjct: 364 RLKEFSQEQQEDLAKRQEKLQEVHDHLFENSKSMLEAQEAFEAKQANMFVALDKLFALHN 423

Query: 420 AMLLESRMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDI 479
           AMLLESR+IKAF IY LSIF+IYM TSTKQTY +RPRLYIGLC+T  +EV + R+   D 
Sbjct: 424 AMLLESRVIKAFVIYFLSIFVIYMFTSTKQTYIIRPRLYIGLCVTLALEVASLRYVN-DT 482

Query: 480 EQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSW- 538
           E+Q WI++  RSLF LLA+ QLLH+ F+YRDYE+LN+Q+L  +++K+NGM+ +K +LS+ 
Sbjct: 483 ERQAWIINLIRSLFALLASAQLLHAAFSYRDYEVLNHQILLRLVDKVNGMQSNK-DLSYD 541

Query: 539 -DTNSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATR-YDLRPR 591
            DT SE+DW+SWVDTDL ++ D+  DP+Y +P  + +N +TTSS+  R Y+ RPR
Sbjct: 542 EDTESEVDWTSWVDTDLTDDDDNLGDPDYKIPLVIKDNPVTTSSMTRRLYNFRPR 596

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	593
TAIR|locus:2173877	593	GEX1 "gamete expressed protein	0.981	0.981	0.514	2.1e-155

TAIR|locus:2173877 GEX1 "gamete expressed protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
 Identities = 306/595 (51%), Positives = 408/595 (68%)

Query:     3 RPHILFMLILFLV-LP-GCQSWGWFSSGSS-AEKTQQSDYPRDISNGFVAEFSMKGLHNE 59
             R  +LF+L++ L+  P  C SWGWFSS SS AE    S + R   +    +FSM+   ++
Sbjct:     6 RKCLLFLLLIILLDSPLTCHSWGWFSSSSSSAEDPYSSSFSRSRKSN--PDFSMEVFSDQ 63

Query:    60 KGKQLVEDAKRRLIGSNACWQNAYRHLFAGCSEIIAIEEKRSRFAWHLSDCFQKDSGRPA 119
             K  Q++E+   +L+G  +CWQNAY +L AGC E IA EEKR RFAW+LSDCF KDSGRPA
Sbjct:    64 KAVQVLEN---KLVGLTSCWQNAYSYLLAGCKETIATEEKRKRFAWYLSDCFIKDSGRPA 120

Query:   120 FPNCDQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSAD 179
             FP C  +S M++CLKK+DD EHKIYL FLLETN+IC QLQ++ F+ E ERLVNELK +A 
Sbjct:   121 FPTCKDESVMMSCLKKLDDHEHKIYLDFLLETNTICQQLQSNAFKNEIERLVNELKNTAQ 180

Query:   180 YTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYN 239
             YTE KL+I+E KSD L+Q+S+ IHDSL S+D RVQNVA     +   +  LS+ +  +  
Sbjct:   181 YTEDKLDILESKSDALIQTSSMIHDSLGSLDVRVQNVASVTNTLETSVSGLSQQTVEISQ 240

Query:   240 QSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDXXXXXXXXXXXXGD 299
             + K IA SQ  L++GQV++KE L +GM   +DAY+N+ + V+ L+             G+
Sbjct:   241 EQKNIAESQLALRDGQVKMKETLKDGMDMFLDAYTNIQEGVDKLKSDTEQIEVEISVLGN 300

Query:   300 AMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQ 359
              + + M  LQ   D+IG+    SLDKQQ+LL GQ+ AL+ +Q LT+FQSEAL ESRNTLQ
Sbjct:   301 NLSTKMIDLQSTTDDIGTKTRSSLDKQQKLLDGQTVALDGIQFLTRFQSEALQESRNTLQ 360

Query:   360 ELAEYGHXXXXXXXXXXXXXXXVHDHLFKNSRSILAAQEAFESKQASMFIALDKLFALHN 419
              L E+                 VHDHLF+NS+S+L AQ AFE+KQA+MF+ALDKLFALHN
Sbjct:   361 RLKEFSQEQQEDLAKRQEKLQEVHDHLFENSKSMLEAQVAFEAKQANMFVALDKLFALHN 420

Query:   420 AMLLESRMIKAXXXXXXXXXXXXMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDI 479
             AMLLESR+IKA            M TSTKQTY +RPRLYIGLC+T  +EV + R+   D 
Sbjct:   421 AMLLESRVIKAFVIYFLSIFVIYMFTSTKQTYIIRPRLYIGLCVTLALEVASLRYVN-DT 479

Query:   480 EQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILNYQMLQTVLEKINGMERDKEELSWD 539
             E+Q W+++  RSLF LLA+ QLLH+  +YRDYE+LN+Q+L  +++K+N M+  K+ELS+D
Sbjct:   480 ERQAWMINLIRSLFALLASAQLLHAALSYRDYEVLNHQILLRLVDKVNDMQ-SKKELSYD 538

Query:   540 --TNSEIDWSSWVDTDLQEEVDDYEDPNYIVPEEVGENWITTSSLATR-YDLRPR 591
               T SE+DW+SWVDTDL ++ D+  DP+Y +P  + +N +TTSSL  R Y+ RPR
Sbjct:   539 EDTESEVDWTSWVDTDLTDDDDNLADPDYKIPLLIKDNPVTTSSLTRRLYNFRPR 593


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      593       554   0.00098  119 3  11 22  0.39    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  626 (67 KB)
  Total size of DFA:  326 KB (2165 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  52.23u 0.22s 52.45t   Elapsed:  00:00:02
  Total cpu time:  52.24u 0.22s 52.46t   Elapsed:  00:00:02
  Start:  Fri May 10 09:23:50 2013   End:  Fri May 10 09:23:52 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0042802 "identical protein binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q681K7	GEX1_ARATH	No assigned EC number	0.5632	0.9544	0.9544	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029172001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (605 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	593
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 30/255 (11%)

Query: 164 QYETERLVNELKKS-ADYTEHKLEI------IEEKSDTLLQSSNQIHD---SLDSIDHRV 213
           + E E L  EL++      E +LE+      IEE    L   +N+I         +  R+
Sbjct: 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311

Query: 214 QNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDA- 272
            N+ +  + +   ++ L    + +  +  E+     EL+E    ++ +L+E  A L +  
Sbjct: 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371

Query: 273 --YSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLL 330
                L +++  LR +  ++E +I+           +++R  +       D  ++ QQ  
Sbjct: 372 SRLEELEEQLETLRSKVAQLELQIASL-------NNEIER-LEARLERLEDRRERLQQ-- 421

Query: 331 HGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNS 390
                  E  +LL K +   L E +  L+EL E   + QEEL + +E L+E+ + L +  
Sbjct: 422 -------EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474

Query: 391 RSILAAQEAFESKQA 405
           +++ AA+      QA
Sbjct: 475 QALDAAERELAQLQA 489

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 49/238 (20%), Positives = 112/238 (47%), Gaps = 18/238 (7%)

Query: 166 ETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRD 225
           E E  + EL+K+      +LE +EE+ + L +   ++   + ++   +  +    + + +
Sbjct: 688 ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747

Query: 226 LMDILSRHSEVVYNQ----SKEIAASQTELQEGQVRIK------EKLDEGMATLIDAYSN 275
            +  LS+    +  +     + +  ++ EL E +  I+      E+L E +  L +A   
Sbjct: 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807

Query: 276 LGKEVNNLRDEAIE-------IEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQ 328
           L  E+  L +EA         +E+ I+     +    EQ++  +++I S+A   +++ ++
Sbjct: 808 LRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA-EIEELEE 866

Query: 329 LLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHL 386
           L+    + LE+L        EALA  R+ L+EL+E   + + +  + + +L+E+ + L
Sbjct: 867 LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 51/263 (19%), Positives = 108/263 (41%), Gaps = 4/263 (1%)

Query: 145 LAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHD 204
           LA   E   +  +L     + + E+L  ELK   +      +++EE    L +   Q+ +
Sbjct: 663 LAQKRELKELEEELAEL--EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEE 720

Query: 205 SLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDE 264
               +    + + Q    + +L + L    E +    + +   + EL+  +     KL E
Sbjct: 721 LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE-EALAKLKE 779

Query: 265 GMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLD 324
            +  L +    L +E+  L +E  E E+ +      + S  ++ +R    I  +  +  +
Sbjct: 780 EIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Query: 325 KQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHD 384
            +++L   +   LE L+   +   E L E     +EL +   + +EE  + +E+L+E+  
Sbjct: 840 LEEKLDELEE-ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898

Query: 385 HLFKNSRSILAAQEAFESKQASM 407
            L +    I   +E  E  +A +
Sbjct: 899 ELAELKEEIEKLRERLEELEAKL 921

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 3e-05
 Identities = 43/242 (17%), Positives = 104/242 (42%), Gaps = 12/242 (4%)

Query: 166 ETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRD 225
           E +  + EL++  +  + +L  ++E+ + L    + + + L+ +++ ++ + +  + +++
Sbjct: 271 ELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKE 330

Query: 226 LMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRD 285
            ++ L    E      +E+     EL       +E  +E    L      L +    LR+
Sbjct: 331 KIEALKEELEERETLLEELEQLLAEL-------EEAKEELEEKLSALLEELEELFEALRE 383

Query: 286 EAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTK 345
           E  E+E E+++  + +     +++           + L ++ + L  +   LE+     +
Sbjct: 384 ELAELEAELAEIRNELEELKREIESL-----EERLERLSERLEDLKEELKELEAELEELQ 438

Query: 346 FQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQA 405
            + E L E    L+E  E    + +EL +   +LQE    L K   S+ A  +  E++Q 
Sbjct: 439 TELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498

Query: 406 SM 407
           + 
Sbjct: 499 AS 500

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 39/248 (15%), Positives = 106/248 (42%), Gaps = 7/248 (2%)

Query: 168  ERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLM 227
            E  +  L+++    + ++E +EEK   L +   ++ + L+  + R+  + +  + +    
Sbjct: 764  EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRR 823

Query: 228  DILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDE---GMATLIDAYSNLGKEVNNLR 284
            + L +  E +  + +E+     EL+E    ++++L+E    +  L      L  E+  L 
Sbjct: 824  ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELE 883

Query: 285  DEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLT 344
            +E  E+E+E+ +    +    E++++  + +  +       + +L   +    E  +   
Sbjct: 884  EEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTL 943

Query: 345  KFQSEA-LAESRNTLQELAEYGHK---QQEELLKRQEQLQEVHDHLFKNSRSILAAQEAF 400
            + + E  +      ++ L     +   + EE+ +R E+L+   + L +    +L   E  
Sbjct: 944  ETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEEL 1003

Query: 401  ESKQASMF 408
            + ++   F
Sbjct: 1004 DKEKRERF 1011

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 3e-04
 Identities = 43/261 (16%), Positives = 106/261 (40%), Gaps = 14/261 (5%)

Query: 156  YQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQN 215
             +   H  +      +N+L+  A  +  ++  I+ +   L +  ++I   L  I+ ++  
Sbjct: 770  LEEDLHKLEEA----LNDLE--ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR 823

Query: 216  VAQTAKGVRDLMDILSRHSEVVYNQ----SKEIAASQTELQEGQVRIKEKLDEGMATLID 271
            +    + +   +  L      +  Q     KEI     + +E +  ++E     +  L  
Sbjct: 824  LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA-LRDLES 882

Query: 272  AYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAG--DSLDKQQQL 329
               +L KE + L  +  E+E++I +    +    ++L      + ++      ++  +  
Sbjct: 883  RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942

Query: 330  LHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKN 389
                     SL+ +   + + + E    L+ +     ++ EE+LKR ++L+E    L + 
Sbjct: 943  DEEIPEEELSLEDVQA-ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEE 1001

Query: 390  SRSILAAQEAFESKQASMFIA 410
             ++IL   E +E K+  +F+ 
Sbjct: 1002 RKAILERIEEYEKKKREVFME 1022

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 42/233 (18%), Positives = 99/233 (42%), Gaps = 19/233 (8%)

Query: 175 KKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHS 234
           K+S+   + +L+ +EE+   L     ++ + L S+ + ++++      + +L   L    
Sbjct: 659 KRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDL---LEELRRQLEELE 715

Query: 235 EVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEI 294
             +    +E+AA + EL++ Q R++E L+E +  L +    L + +  L +E   +E+ +
Sbjct: 716 RQLEELKRELAALEEELEQLQSRLEE-LEEELEELEEELEELQERLEELEEELESLEEAL 774

Query: 295 SKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAES 354
           +K           L+ + + +           Q+ L      LE  +         L   
Sbjct: 775 AK-----------LKEEIEELEE----KRQALQEELEELEEELEEAERRLDALERELESL 819

Query: 355 RNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQASM 407
               + L +   + +EE+ + +E+L E+ + L +  + +   +E  E  +A  
Sbjct: 820 EQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEK 872

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 47/245 (19%), Positives = 100/245 (40%), Gaps = 17/245 (6%)

Query: 168 ERLVNELKKSADYTEHKLEIIEEK-----SDTLLQSSNQIHDSLDSIDHRVQNVAQTAKG 222
              ++EL+K  +  E  LE + +K      +  L+   +I +    I    +++A+  + 
Sbjct: 257 TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316

Query: 223 VRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVR---IKEKLDEGMATLIDAYSNLG-- 277
           + D  + L++    +     EI   + E++E + R   + E+  E    L D  + L   
Sbjct: 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEV 376

Query: 278 -KEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQL--LHGQS 334
            KE    RDE  +  +++ K    +     +L R  + +  ++ +  D    +  +  + 
Sbjct: 377 DKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKI 436

Query: 335 TALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSIL 394
             LE      + ++  + +    L++LA    K ++EL   +E+   V   L    +  L
Sbjct: 437 NELEE---EKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL-SKLQREL 492

Query: 395 AAQEA 399
           A  EA
Sbjct: 493 AEAEA 497

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 34/165 (20%), Positives = 77/165 (46%), Gaps = 9/165 (5%)

Query: 166 ETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKG-VR 224
           E E+L+ EL+++ +  E KL  + E+ + L ++  +    L++    ++N  +  K  + 
Sbjct: 348 ELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIE 407

Query: 225 DLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLR 284
            L + L R SE + +  +E+   + EL+E Q  ++E  +E           L +++  LR
Sbjct: 408 SLEERLERLSERLEDLKEELKELEAELEELQTELEELNEE--------LEELEEQLEELR 459

Query: 285 DEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQL 329
           D   E+E+E+++  + +    ++L      +  +  +    Q   
Sbjct: 460 DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVR 504

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	593
PF04163	544	Tht1: Tht1-like nuclear fusion protein ; InterPro:	99.36
smart00283	262	MA Methyl-accepting chemotaxis-like domains (chemo	95.99
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	95.31
PRK15048	553	methyl-accepting chemotaxis protein II; Provisiona	95.27
PRK15041	554	methyl-accepting chemotaxis protein I; Provisional	94.01
KOG4812	262	consensus Golgi-associated protein/Nedd4 WW domain	93.63
PRK09793	533	methyl-accepting protein IV; Provisional	93.51
smart00283	262	MA Methyl-accepting chemotaxis-like domains (chemo	91.59
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.3
PF07464	155	ApoLp-III: Apolipophorin-III precursor (apoLp-III)	90.92
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.84
PF00015	213	MCPsignal: Methyl-accepting chemotaxis protein (MC	88.42
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.39
KOG0972	384	consensus Huntingtin interacting protein 1 (Hip1)	88.06
PRK15048	553	methyl-accepting chemotaxis protein II; Provisiona	87.96
PRK11637	428	AmiB activator; Provisional	87.43
PRK09793	533	methyl-accepting protein IV; Provisional	87.2
PRK11637	428	AmiB activator; Provisional	87.17
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	85.91
PF14662	193	CCDC155: Coiled-coil region of CCDC155	85.36
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	85.34
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	83.12
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	82.95
PRK15041	554	methyl-accepting chemotaxis protein I; Provisional	82.23
TIGR00996	291	Mtu_fam_mce virulence factor Mce family protein. M	81.95
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	81.76
PF01442	202	Apolipoprotein: Apolipoprotein A1/A4/E domain; Int	80.84
KOG0996	1293	consensus Structural maintenance of chromosome pro	80.12

>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy

Probab=99.36  E-value=1.3e-07  Score=105.47  Aligned_cols=105  Identities=20%  Similarity=0.383  Sum_probs=83.0

Q ss_pred             cCCCCchHHHHHHHHhccc---hhhhhcHHHHHHHHHHhhcchhhhcCCCCCC-CCCCcccHhHhhhcC--ChHHHHHHH
Q 007691           72 LIGSNACWQNAYRHLFAGC---SEIIAIEEKRSRFAWHLSDCFQKDSGRPAFP-NCDQKSAMINCLKKI--DDEEHKIYL  145 (593)
Q Consensus        72 l~~~~~CW~~Al~~L~~~C---~~L~~~de~qSrLAl~LtNC~le~SGR~~fp-~C~~~~si~~Ct~~M--dd~af~vY~  145 (593)
                      +...+.|++.|+..+-+.|   ....+-| .|.+.|++|+-|.++.+|- .+| .|.. .++..|+..|  ++..|.+|+
T Consensus        59 l~~~s~C~~~A~~~l~~~C~~~~g~esid-~rv~~Ai~LsiCEle~a~~-~iP~~C~~-~~~~~Cl~~L~~s~q~Wttys  135 (544)
T PF04163_consen   59 LFLKSSCHRDALRSLIPQCQLLDGVESID-DRVSSAIKLSICELENAGI-EIPSECSP-GSLDSCLRALESSPQWWTTYS  135 (544)
T ss_pred             hccCCcHHHHHHHHHHHhhcCCCCcccHH-HHHHHHHHHHhhhcccCCC-CCCcccCc-ccHHHHHHHhcCCcHHHHhhh
Confidence            3467899999999999999   2222223 7888899999999999996 344 5888 6799999988  589999999


Q ss_pred             HHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHhHH
Q 007691          146 AFLLETNSICYQLQAHGFQYETERLVNELKKSAD  179 (593)
Q Consensus       146 eF~~ht~sIC~~Lq~q~fq~~TE~tVnkL~~sS~  179 (593)
                      -+|.++..||+..+....+++.=.+-..+.+...
T Consensus       136 ~~~~~~~~iC~a~r~~~eKeqiL~ly~niT~v~~  169 (544)
T PF04163_consen  136 GYYQNALVICHAARLPYEKEQILELYQNITEVYS  169 (544)
T ss_pred             hhHhhHHHHHHHccCchhHHHHHHHHHHHHHHHH
Confidence            9999999999999988777765444444444433

>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)

Probab=95.99  E-value=1.7  Score=42.33  Aligned_cols=19  Identities=37%  Similarity=0.468  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 007691          279 EVNNLRDEAIEIEKEISKA  297 (593)
Q Consensus       279 ~~ekl~~~t~~i~~ei~~~  297 (593)
                      ++..|.+.+...-.+|.++
T Consensus       134 ~I~~la~~t~~~~~ev~~~  152 (262)
T smart00283      134 EVRKLAERSAESAKEIESL  152 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3334444333333333333

Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.31  E-value=4.9  Score=42.82  Aligned_cols=90  Identities=18%  Similarity=0.295  Sum_probs=70.9

Q ss_pred             hhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHHHhhH------HHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHH
Q 007691          301 MFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQ------LLTKFQSEALAESRNTLQELAEYGHKQQEELLK  374 (593)
Q Consensus       301 l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~------~l~~~q~~aleesr~t~q~la~~~~~qqeell~  374 (593)
                      +-..|+.++..-.++-....+.++.|-..-.|+...-+.+.      +...|..+|+..+-...+.|+|.-.|+. ++..
T Consensus       132 f~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~~~~~~~~~l~Eiq~Rh~-~ik~  210 (297)
T KOG0810|consen  132 LKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQDRGQAKQTLAEIQERHD-EIKK  210 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHH
Confidence            44567788888888888888899999888888554444444      6777888999888888888998866665 7889


Q ss_pred             HHHHHHHHHHHhhhchH
Q 007691          375 RQEQLQEVHDHLFKNSR  391 (593)
Q Consensus       375 ~q~ql~~~h~~l~~~s~  391 (593)
                      ..+.|++.|+-++++.-
T Consensus       211 LEksi~ELhqlFlDMa~  227 (297)
T KOG0810|consen  211 LEKSIRELHQLFLDMAV  227 (297)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998877653

>PRK15048 methyl-accepting chemotaxis protein II; Provisional

Probab=95.27  E-value=6.5  Score=43.98  Aligned_cols=6  Identities=50%  Similarity=0.634  Sum_probs=2.1

Q ss_pred             HHHHHH
Q 007691          280 VNNLRD  285 (593)
Q Consensus       280 ~ekl~~  285 (593)
                      +-+|.+
T Consensus       401 Vr~LA~  406 (553)
T PRK15048        401 VRNLAS  406 (553)
T ss_pred             HHHHHH
Confidence            333333

>PRK15041 methyl-accepting chemotaxis protein I; Provisional

Probab=94.01  E-value=13  Score=41.95  Aligned_cols=13  Identities=0%  Similarity=-0.255  Sum_probs=6.0

Q ss_pred             hccccCccccccc
Q 007691           15 VLPGCQSWGWFSS   27 (593)
Q Consensus        15 ~~~~~~s~~WFsS   27 (593)
                      +.+..+.+|+|+-
T Consensus        21 ~~~~~g~~~~~~~   33 (554)
T PRK15041         21 LQLTSGGLFFNAL   33 (554)
T ss_pred             HHHHHHHHHHHHH
Confidence            3344444555443

>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]

Probab=93.63  E-value=0.08  Score=54.49  Aligned_cols=76  Identities=24%  Similarity=0.393  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCccccccchhhHHHHHHHHHHHHHHHHhcccchh----hhhHHHHhHHHHHHHHHHHHHH
Q 007691          426 RMIKAFFIYSLSIFIIYMLTSTKQTYTVRPRLYIGLCLTFLIEVVTFRFTTYDI----EQQTWIVSCDRSLFVLLAAIQL  501 (593)
Q Consensus       426 ~~~ksf~fY~~~~~~iymlTStk~T~saR~~L~~lL~~~l~iEr~l~~~~~~~~----~~~~w~~~~~R~~f~~~~~v~l  501 (593)
                      .+|.+|+|-++.+++.|.||.|   ..+|---.+||.++++-=.+|.+ .+|++    ..|+|    +=++|+++|..+.
T Consensus       166 af~vAflFnwIGFlltycl~tT---~agRYGA~~GfGLsLikwilIv~-~sd~f~~y~n~q~w----Lwwi~~vlG~ll~  237 (262)
T KOG4812|consen  166 AFIVAFLFNWIGFLLTYCLTTT---HAGRYGAISGFGLSLIKWILIVR-FSDDFESYFNGQYW----LWWIFLVLGLLLF  237 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh---HhhhhhhhhccchhhheeeEEee-cccccccccccchH----HHHHHHHHHHHHH
Confidence            4678999999999999999975   45788888999999887333333 44443    45777    6899999999999


Q ss_pred             HHHHHhcc
Q 007691          502 LHSIFTYR  509 (593)
Q Consensus       502 l~~i~~yr  509 (593)
                      |+.++.|=
T Consensus       238 lr~~i~Yi  245 (262)
T KOG4812|consen  238 LRGFINYI  245 (262)
T ss_pred             HHHHHhHH
Confidence            99999773

>PRK09793 methyl-accepting protein IV; Provisional

Probab=93.51  E-value=16  Score=41.09  Aligned_cols=85  Identities=12%  Similarity=0.169  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhH
Q 007691          276 LGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESR  355 (593)
Q Consensus       276 l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr  355 (593)
                      +++|+-+|.++|.+--++|...=+.+...++.-..    ....++.+++.-..-...-...+..+..-.+-|....++-.
T Consensus       395 VA~EVR~LAe~t~~a~~~I~~~i~~~~~~v~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~  470 (533)
T PRK09793        395 VAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGSK----LVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVA  470 (533)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666666666665555555543333333322211    22223333443333333333444444444444555555555


Q ss_pred             HHHHHHHHH
Q 007691          356 NTLQELAEY  364 (593)
Q Consensus       356 ~t~q~la~~  364 (593)
                      ..+..+.+.
T Consensus       471 ~~i~~i~~~  479 (533)
T PRK09793        471 QAVSQMDQV  479 (533)
T ss_pred             HHHHHHHHH
Confidence            555444433

>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)

Probab=91.59  E-value=14  Score=35.95  Aligned_cols=10  Identities=10%  Similarity=0.149  Sum_probs=3.6

Q ss_pred             HHHHHhHHHH
Q 007691          349 EALAESRNTL  358 (593)
Q Consensus       349 ~aleesr~t~  358 (593)
                      .+.++....+
T Consensus       214 ~~~~~~~~~~  223 (262)
T smart00283      214 AGSEEVNAAI  223 (262)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.30  E-value=4.4  Score=47.89  Aligned_cols=65  Identities=17%  Similarity=0.272  Sum_probs=46.6

Q ss_pred             HHHHhHHHHH---HHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhH
Q 007691          146 AFLLETNSIC---YQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSID  210 (593)
Q Consensus       146 eF~~ht~sIC---~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~  210 (593)
                      +|+.++..++   |...++.-+.+.++=|+.|..-...+.+.|..+.+..+.|.+....+++-+..+.
T Consensus       539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~  606 (717)
T PF10168_consen  539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAK  606 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6667777777   4566777888888888889888888888888888877777665544444333333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences

Probab=90.92  E-value=1.5  Score=42.63  Aligned_cols=59  Identities=15%  Similarity=0.277  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 007691          244 IAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSM  305 (593)
Q Consensus       244 Ia~sQ~eL~e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m  305 (593)
                      |.....+|+...-++.+++.+=-+.|..+++.+.++++++..   +|.+++..+.+.|...|
T Consensus        72 l~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k---~v~~~~~~~~e~l~~~~  130 (155)
T PF07464_consen   72 LEETAEKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAK---EVSENSEGANEKLQPAI  130 (155)
T ss_dssp             HHHHHHGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHH---HHHS---SS-GGGHHHH
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHH
Confidence            444444554444445555555555566666666666666643   34444444444444333

Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.84  E-value=18  Score=42.90  Aligned_cols=35  Identities=9%  Similarity=0.328  Sum_probs=16.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007691          155 CYQLQAHGFQYETERLVNELKKSADYTEHKLEIIE  189 (593)
Q Consensus       155 C~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~  189 (593)
                      |+.+=.++.+...|+-|.++...-.+..+....+.
T Consensus       537 ~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk  571 (717)
T PF10168_consen  537 CLELLSQATKVLREEYIEKQDLAREEIQRRVKLLK  571 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555554444444444433333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []

Probab=88.42  E-value=24  Score=33.74  Aligned_cols=25  Identities=20%  Similarity=0.415  Sum_probs=10.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhHHH
Q 007691          171 VNELKKSADYTEHKLEIIEEKSDTL  195 (593)
Q Consensus       171 VnkL~~sS~~a~~~Le~l~e~qe~L  195 (593)
                      ++.+........+.++.+.+..++|
T Consensus        18 ~~~~~~~~~~~~~~~~~l~~~~~~i   42 (213)
T PF00015_consen   18 MEEIQESIEEIAESIEELSESSEDI   42 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444433

Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=88.39  E-value=12  Score=40.99  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=13.7

Q ss_pred             HHhhhhHHHHHHHHHHHHH
Q 007691          158 LQAHGFQYETERLVNELKK  176 (593)
Q Consensus       158 Lq~q~fq~~TE~tVnkL~~  176 (593)
                      +....|+.+.||..-+|.-
T Consensus       191 vd~~eWklEvERV~PqLKv  209 (359)
T PF10498_consen  191 VDPAEWKLEVERVLPQLKV  209 (359)
T ss_pred             CCHHHHHHHHHHHhhhhee
Confidence            3456788888888888854

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]

Probab=88.06  E-value=8.5  Score=41.24  Aligned_cols=142  Identities=18%  Similarity=0.268  Sum_probs=86.3

Q ss_pred             HhhhhHHHHHHHHHHHHHhHHHHHH----HHHHHHHHhHHHHhhhhhhhcchhhhHHHH----HHHHHhhhhHHHHHHHh
Q 007691          159 QAHGFQYETERLVNELKKSADYTEH----KLEIIEEKSDTLLQSSNQIHDSLDSIDHRV----QNVAQTAKGVRDLMDIL  230 (593)
Q Consensus       159 q~q~fq~~TE~tVnkL~~sS~~a~~----~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~----~~laet~k~v~~~i~~l  230 (593)
                      .+..|+.+.||..-+|.-+-..-.+    -++.+++....|.+-++.+.-.|..++.-.    ++++.--|++-+++..+
T Consensus       199 Da~eW~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l  278 (384)
T KOG0972|consen  199 DAIEWKLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASL  278 (384)
T ss_pred             hHHHHHHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567999999999888776543211    134444444455555555555555554332    56666667888888888


Q ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHhhHHHHHHHHHHHHHHHHHH
Q 007691          231 SRHSEVVYNQSKEIAASQTELQEGQVRIKEKLDEGMATLI----------------DAYSNLGKEVNNLRDEAIEIEKEI  294 (593)
Q Consensus       231 ~~~s~~i~Eq~~eIa~sQ~eL~e~q~~m~~~l~~g~a~~~----------------esy~~l~~~~ekl~~~t~~i~~ei  294 (593)
                      -+..+.+..+..+|...+.++++|-.+-++.+++-|.-+.                .....+.+.+-||++++..+-.+|
T Consensus       279 ~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~i  358 (384)
T KOG0972|consen  279 MQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQI  358 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhhe
Confidence            8877777777777777777777666665555554443331                123345555556666666666665


Q ss_pred             Hhhhhh
Q 007691          295 SKAGDA  300 (593)
Q Consensus       295 ~~~g~~  300 (593)
                      ..+-++
T Consensus       359 gv~ehs  364 (384)
T KOG0972|consen  359 GVFEHS  364 (384)
T ss_pred             ehhhHH
Confidence            554443

>PRK15048 methyl-accepting chemotaxis protein II; Provisional

Probab=87.96  E-value=51  Score=36.99  Aligned_cols=46  Identities=11%  Similarity=0.203  Sum_probs=22.5

Q ss_pred             hhcchHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 007691          319 AGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEY  364 (593)
Q Consensus       319 ~~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr~t~q~la~~  364 (593)
                      ++++++....-.......+..+..-.+-|+...++-...+..+++.
T Consensus       436 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~  481 (553)
T PRK15048        436 AGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRV  481 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444455544444555555555555544443

>PRK11637 AmiB activator; Provisional

Probab=87.43  E-value=50  Score=36.32  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=17.2

Q ss_pred             HHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHh
Q 007691          351 LAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHL  386 (593)
Q Consensus       351 leesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l  386 (593)
                      |++.++.++.+..--..++.+|.....+-+..++.|
T Consensus       189 le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L  224 (428)
T PRK11637        189 LEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGL  224 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444455555555555544444443

>PRK09793 methyl-accepting protein IV; Provisional

Probab=87.20  E-value=57  Score=36.72  Aligned_cols=11  Identities=18%  Similarity=0.287  Sum_probs=5.8

Q ss_pred             HHHhhhhhhhh
Q 007691          310 RKADNIGSMAG  320 (593)
Q Consensus       310 ~~a~~I~~~~~  320 (593)
                      .++.+|.....
T Consensus       408 ~a~~~I~~~i~  418 (533)
T PRK09793        408 QAAKEIKGLIE  418 (533)
T ss_pred             HHHHHHHHHHH
Confidence            45555655543

>PRK11637 AmiB activator; Provisional

Probab=87.17  E-value=52  Score=36.22  Aligned_cols=17  Identities=6%  Similarity=0.083  Sum_probs=8.7

Q ss_pred             hhcCChHHHHHHHHHHH
Q 007691          133 LKKIDDEEHKIYLAFLL  149 (593)
Q Consensus       133 t~~Mdd~af~vY~eF~~  149 (593)
                      |+...++-|.+--.+..
T Consensus        10 ~~~~~~~~~~~~~~~~~   26 (428)
T PRK11637         10 TRAVKPRRFAIRPILYA   26 (428)
T ss_pred             cccccchhhhhhhHHHH
Confidence            34445555655544444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=85.91  E-value=1e+02  Score=38.46  Aligned_cols=239  Identities=20%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHH
Q 007691          166 ETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIA  245 (593)
Q Consensus       166 ~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa  245 (593)
                      ..+..+..+........+.+..+...-..+......+...+.++..+.+.+......+...+..+...-..+-+...+..
T Consensus       776 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~  855 (1163)
T COG1196         776 KLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE  855 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH


Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHhhhhhhh
Q 007691          246 ASQTELQ---EGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMF---SSMEQLQRKADNIGSMA  319 (593)
Q Consensus       246 ~sQ~eL~---e~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~---~~m~~lq~~a~~I~~~~  319 (593)
                      ..-.++.   ++.......+.+.+.........+..+++++..+-.++..++...-..+.   .++..+......+....
T Consensus       856 ~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  935 (1163)
T COG1196         856 KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEEL  935 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh


Q ss_pred             hc--------chHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchH
Q 007691          320 GD--------SLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSR  391 (593)
Q Consensus       320 ~~--------SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~  391 (593)
                      ..        .+++....+.-+..+++..|      ..|+++..+.-.++. +...+.++|-+.-+.|+.+++.+-+-.+
T Consensus       936 ~~~~~~~~~~~~~~~i~~le~~i~~lg~VN------~~Aiee~e~~~~r~~-~l~~~~~dl~~a~~~l~~~i~~~d~~~~ 1008 (1163)
T COG1196         936 EEEYEDTLETELEREIERLEEEIEALGPVN------LRAIEEYEEVEERYE-ELKSQREDLEEAKEKLLEVIEELDKEKR 1008 (1163)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHhccCCC------hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHH-HHHHHHHhHHHHHHHH
Q 007691          392 SILA-AQEAFESKQASMFIAL  411 (593)
Q Consensus       392 sil~-aqe~~~~~q~~vf~~L  411 (593)
                      +.+. +++.+.++=..||..|
T Consensus      1009 ~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196        1009 ERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=85.36  E-value=45  Score=33.81  Aligned_cols=111  Identities=19%  Similarity=0.281  Sum_probs=69.1

Q ss_pred             HHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHHH
Q 007691          174 LKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQE  253 (593)
Q Consensus       174 L~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~e  253 (593)
                      |.+-.......++.+.+....|...-.++...+.++    ++..+-.|.|..-+.|+...-..+-|+.+.+.+.-.++..
T Consensus        20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~----Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEk   95 (193)
T PF14662_consen   20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL----QQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEK   95 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444445555555555555444444444333    3455566778888888888888888888888888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007691          254 GQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEK  292 (593)
Q Consensus       254 ~q~~m~~~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~  292 (593)
                      +|..+    .++|+.+.+.+..+--+.|.++..+.++..
T Consensus        96 E~q~L----~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~  130 (193)
T PF14662_consen   96 EQQSL----VAEIETLQEENGKLLAERDGLKKRSKELAT  130 (193)
T ss_pred             HHHHH----HHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence            76643    456666666666666666666555554443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=85.34  E-value=1.2e+02  Score=38.49  Aligned_cols=50  Identities=24%  Similarity=0.240  Sum_probs=26.2

Q ss_pred             HHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHhH
Q 007691          352 AESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFESKQ  404 (593)
Q Consensus       352 eesr~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~sil~aqe~~~~~q  404 (593)
                      ++.++...+++.....+-++|-.+=++   .--.-+.||.+.-.|.++..+-+
T Consensus      1604 ~~~t~~aE~~~~~a~q~~~eL~~~~e~---lk~~~~qns~~A~~a~~~a~sa~ 1653 (1758)
T KOG0994|consen 1604 QEETAAAEKLATSATQQLGELETRMEE---LKHKAAQNSAEAKQAEKTAGSAK 1653 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccHHHHHHHHHHHHHH
Confidence            344444444554444444454433333   33445677777777776665433

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=83.12  E-value=60  Score=33.43  Aligned_cols=104  Identities=13%  Similarity=0.230  Sum_probs=69.1

Q ss_pred             HHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007691          193 DTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKE-IAASQTELQEGQVRIKEKLDEGMATLID  271 (593)
Q Consensus       193 e~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~e-Ia~sQ~eL~e~q~~m~~~l~~g~a~~~e  271 (593)
                      ..|-+...++.+.|..+....-++--..|.++..++......+...++... +..+...|...=..=...+++-...+..
T Consensus        27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~  106 (225)
T COG1842          27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEA  106 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444455555555555555555666666776666666666555554 5555566655555555667777778888


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691          272 AYSNLGKEVNNLRDEAIEIEKEISK  296 (593)
Q Consensus       272 sy~~l~~~~ekl~~~t~~i~~ei~~  296 (593)
                      +|..+...+++++-.-..++.+|..
T Consensus       107 ~~~~~~~~~~~l~~~~~~Le~Ki~e  131 (225)
T COG1842         107 ELQQAEEQVEKLKKQLAALEQKIAE  131 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999998888888888877

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=82.95  E-value=1.4e+02  Score=37.72  Aligned_cols=10  Identities=20%  Similarity=0.448  Sum_probs=4.1

Q ss_pred             HHHHHHHHhc
Q 007691           63 QLVEDAKRRL   72 (593)
Q Consensus        63 k~le~a~~kl   72 (593)
                      +++++++.++
T Consensus      1354 ~~L~el~~~l 1363 (1758)
T KOG0994|consen 1354 RLLVELRAEL 1363 (1758)
T ss_pred             HHHHHHHHHh
Confidence            3444444433

>PRK15041 methyl-accepting chemotaxis protein I; Provisional

Probab=82.23  E-value=96  Score=35.20  Aligned_cols=118  Identities=13%  Similarity=0.164  Sum_probs=66.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhhhhhhhcchHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhH
Q 007691          276 LGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESR  355 (593)
Q Consensus       276 l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~~I~~~~~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr  355 (593)
                      +++|+-+|.++|.+--++|..+=+.+...++.-    .++...++++++.-..-...-...++.+..-.+-|+.+.++-.
T Consensus       399 VA~EVR~LA~~s~~at~~I~~~i~~~~~~v~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~  474 (554)
T PRK15041        399 VAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVG----STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVG  474 (554)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777776666666665444333333332    2233445556666555566666666666666666777777777


Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHH
Q 007691          356 NTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEAFE  401 (593)
Q Consensus       356 ~t~q~la~~~~~qqeell~~q~ql~~~h~~l~~~s~sil~aqe~~~  401 (593)
                      ..+..+....+..    ...-+++..+-+.|.+.+..+-+....|+
T Consensus       475 ~~i~~i~~~~~~~----~~~~~~~~~~~~~l~~~a~~L~~~v~~Fk  516 (554)
T PRK15041        475 LAVAEMDRVTQQN----AALVEESAAAAAALEEQASRLTEAVAVFR  516 (554)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7766666543332    23334455555555555555555555554

>TIGR00996 Mtu_fam_mce virulence factor Mce family protein

Probab=81.95  E-value=56  Score=33.62  Aligned_cols=54  Identities=15%  Similarity=0.238  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHHHHHHHHhhhhHHHHHHHhh
Q 007691          178 ADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRDLMDILS  231 (593)
Q Consensus       178 S~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~  231 (593)
                      .....+.+..+..-.+.+.....++...+.++..=...+++.++.+...++.+.
T Consensus       166 ~~~l~~~l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~  219 (291)
T TIGR00996       166 GPQLRNLLDGLAQLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLA  219 (291)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            333444444444444444444444444444444334444444444444444333

Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=81.76  E-value=58  Score=32.37  Aligned_cols=36  Identities=19%  Similarity=0.360  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 007691          261 KLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISK  296 (593)
Q Consensus       261 ~l~~g~a~~~esy~~l~~~~ekl~~~t~~i~~ei~~  296 (593)
                      .+.+-++.+...+..+...+++|++.-..++.+|..
T Consensus        95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e  130 (221)
T PF04012_consen   95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEE  130 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666666666666666655555555544

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene

Probab=80.84  E-value=48  Score=30.81  Aligned_cols=9  Identities=22%  Similarity=0.637  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q 007691          261 KLDEGMATL  269 (593)
Q Consensus       261 ~l~~g~a~~  269 (593)
                      .|.+.+..+
T Consensus        64 ~i~~~~~~~   72 (202)
T PF01442_consen   64 RIEERIEEL   72 (202)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.12  E-value=1.8e+02  Score=36.86  Aligned_cols=171  Identities=12%  Similarity=0.161  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHH---HHHHHHHhH------------------HHHh
Q 007691          139 EEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHK---LEIIEEKSD------------------TLLQ  197 (593)
Q Consensus       139 ~af~vY~eF~~ht~sIC~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~---Le~l~e~qe------------------~Ll~  197 (593)
                      ...+.=.+|. ..-+-|+++++..+|..-.++.++++.....-...   |....+..+                  +..+
T Consensus       302 ~~k~~al~fL-~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~  380 (1293)
T KOG0996|consen  302 GPKNEALEFL-KKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAK  380 (1293)
T ss_pred             hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            3444444544 44566899999999999999888887655442222   222222211                  0000


Q ss_pred             hhh----hhhcchhhhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007691          198 SSN----QIHDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIA---ASQTELQEGQVRIKEKLDEGMATLI  270 (593)
Q Consensus       198 ~~~----~~~dsL~s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa---~sQ~eL~e~q~~m~~~l~~g~a~~~  270 (593)
                      ..+    .....+..++.+.-+..+..|++...+..+.+   .+-+-.+++.   ..-...+....++...|++=-....
T Consensus       381 ~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKlek---e~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~  457 (1293)
T KOG0996|consen  381 ELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEK---EIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLE  457 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHH
Confidence            000    11112223333333444444444444432222   2222222211   1111223333344444444444445


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHh
Q 007691          271 DAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKAD  313 (593)
Q Consensus       271 esy~~l~~~~ekl~~~t~~i~~ei~~~g~~l~~~m~~lq~~a~  313 (593)
                      .....+-+..++++++|..|.+|+......|.-....+.....
T Consensus       458 ~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~  500 (1293)
T KOG0996|consen  458 KEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS  500 (1293)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666667777777777778887777777654444443333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	593
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.7 bits (180), Expect = 9e-14
 Identities = 78/544 (14%), Positives = 163/544 (29%), Gaps = 143/544 (26%)

Query: 59  EKGKQLVEDAKRRLIGSNACW-QNAYRHLFAGCSEIIAI-EEKRSRFAWHLSDCFQKDS- 115
            K +++V+     ++  N  +  +  +      S +  +  E+R R  ++ +  F K + 
Sbjct: 73  SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNV 131

Query: 116 GRPAFPNCDQKSAMINCLKKIDDEE----H------KIYLA-----------------FL 148
            R           +   L ++   +           K ++A                 F 
Sbjct: 132 SRL-----QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 149 L------ETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQI 202
           L         ++   LQ     Y+ +         +   + ++  I+ +   LL+S    
Sbjct: 187 LNLKNCNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPY 243

Query: 203 HDSLDSIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQEGQVRIKEKL 262
            + L  + + VQN         +  ++  +   ++  + K++    +      + +    
Sbjct: 244 ENCLLVLLN-VQN-----AKAWNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 263 -----DEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGS 317
                DE  + L+     L     +L  E            +    S+         I  
Sbjct: 296 MTLTPDEVKSLLLKY---LDCRPQDLPREV--------LTTNPRRLSI---------IAE 335

Query: 318 MAGDSLDKQQQLLHGQSTALE-----SLQLLTKFQSEALAESRNTLQELA--EYGHKQQE 370
              D L       H     L      SL +L        AE R     L+          
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP------AEYRKMFDRLSVFPPSAHIPT 389

Query: 371 ELLKR------QEQLQEVHDHLFKNSRSILAAQEAFESK------QASMFIALDKLFALH 418
            LL        +  +  V + L K S   L  ++  ES          + + L+  +ALH
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 419 NAMLLESRMIKAF------------FIYSLSIFIIYMLTSTKQT--YTVRPRLYIGLCLT 464
            +++    + K F            + YS    I + L + +     T+   ++      
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYS---HIGHHLKNIEHPERMTLFRMVF------ 497

Query: 465 FLIEVVTFRFTTYDIEQQTWIVSCDRSLFVLLAAIQLLHSIFTYRDYEILN---YQMLQT 521
                + FRF    +EQ+  I     +     + +  L  +  Y+ Y   N   Y+ L  
Sbjct: 498 -----LDFRF----LEQK--IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 522 VLEK 525
            +  
Sbjct: 547 AILD 550

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 32/219 (14%), Positives = 81/219 (36%), Gaps = 4/219 (1%)

Query: 166  ETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRD 225
            E E    +L+      + K++ +E+    +   +N++      ++ RV ++        +
Sbjct: 966  EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025

Query: 226  LMDILSRHSEVVYNQSKEIAASQTELQEGQ---VRIKEKLDEGMATLIDAYSNLGKEVNN 282
                L++      +   E+     + ++ +    +IK KL+   + L +  + L  ++  
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 283  LRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALESLQL 342
            L+ +  + E+E+  A   +     Q       I  +    +   Q+ L  +  A    + 
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELE-SHISDLQEDLESEKAARNKAEK 1144

Query: 343  LTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQE 381
              +  SE L   +  L++  +    QQE      +   +
Sbjct: 1145 QKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 32/246 (13%), Positives = 88/246 (35%), Gaps = 10/246 (4%)

Query: 166  ETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNVAQTAKGVRD 225
            E E    +L+      + ++  +EE+ +    +  ++     + D +++ +      + D
Sbjct: 938  EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997

Query: 226  LMDILSRHSEVVYNQSKEIAASQTELQEGQ------VRIKEKLDEGMATLIDAYSNLGKE 279
              + L++  +      + ++   T L E +       ++K K +  ++ L        K 
Sbjct: 998  QNNKLTKERK---LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054

Query: 280  VNNLRDEAIEIEKEISKAGDAMFSSMEQLQRKADNIGSMAGDSLDKQQQLLHGQSTALES 339
               L     ++E E S   + +     Q+      +     +      +L    S    +
Sbjct: 1055 RQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNA 1114

Query: 340  LQLLTKFQSEALAESRNTLQELAEYGHKQQEELLKRQEQLQEVHDHLFKNSRSILAAQEA 399
            L+ + + +S  +++ +  L+      +K +++     E+L+ +   L     +    QE 
Sbjct: 1115 LKKIRELESH-ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173

Query: 400  FESKQA 405
              S   
Sbjct: 1174 RGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 31/189 (16%), Positives = 77/189 (40%), Gaps = 8/189 (4%)

Query: 124  DQKSAMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEH 183
            + ++  +   +K+ +E        L E       L     + + E +++EL+      E 
Sbjct: 996  EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK--LKNKHESMISELEVRLKKEEK 1053

Query: 184  KLEIIEEKSDTLLQSSNQIHDSLDSIDHRVQNV-AQTAKGVRDLMDILSRHSEVVYNQSK 242
              + +E+    L   S+ +H+ +  +  ++  + AQ AK   +L   L+R  +    ++ 
Sbjct: 1054 SRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED----ETS 1109

Query: 243  EIAASQTELQEGQVRIKEKLDEGMATLIDAYSNLGKEVNNLRDEAIEIEKEISKAGDAMF 302
            +   +  +++E +  I + L E + +   A +   K+  +L +E   ++ E+    D   
Sbjct: 1110 QKNNALKKIRELESHISD-LQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1168

Query: 303  SSMEQLQRK 311
            +  E     
Sbjct: 1169 TQQELRGSD 1177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	593
3zx6_A	341	HAMP, methyl-accepting chemotaxis protein I; signa	93.21
2ch7_A	309	Methyl-accepting chemotaxis protein; receptor, fou	93.12
3zx6_A	341	HAMP, methyl-accepting chemotaxis protein I; signa	90.45
1qu7_A	227	Methyl-accepting chemotaxis protein I; serine, fou	85.81
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	84.16
4f7g_B	216	Talin-1; alpha-helix bundle, integrin activation,	83.7

>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}

Probab=93.21  E-value=8.4  Score=39.39  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=10.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHh
Q 007691          276 LGKEVNNLRDEAIEIEKEISK  296 (593)
Q Consensus       276 l~~~~ekl~~~t~~i~~ei~~  296 (593)
                      +++|+-+|.+++.+--.+|..
T Consensus       186 VAdEVRkLAe~t~~at~~I~~  206 (341)
T 3zx6_A          186 VAGEVRNLAQRSAQAAREIKS  206 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555444444444

>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B

Probab=93.12  E-value=7.1  Score=38.31  Aligned_cols=11  Identities=27%  Similarity=0.558  Sum_probs=4.2

Q ss_pred             HHHHHHHHHHH
Q 007691          279 EVNNLRDEAIE  289 (593)
Q Consensus       279 ~~ekl~~~t~~  289 (593)
                      ++.+|.+++.+
T Consensus       167 eIr~LA~~t~~  177 (309)
T 2ch7_A          167 EIRKLAEESQQ  177 (309)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33334333333

>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}

Probab=90.45  E-value=17  Score=37.12  Aligned_cols=7  Identities=43%  Similarity=0.368  Sum_probs=2.8

Q ss_pred             HHhhhhh
Q 007691          311 KADNIGS  317 (593)
Q Consensus       311 ~a~~I~~  317 (593)
                      ++.+|..
T Consensus       200 at~~I~~  206 (341)
T 3zx6_A          200 AAREIKS  206 (341)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            3344443

>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1

Probab=85.81  E-value=27  Score=33.94  Aligned_cols=46  Identities=9%  Similarity=0.154  Sum_probs=22.3

Q ss_pred             hcchHHHHHHhhchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHHHh
Q 007691          320 GDSLDKQQQLLHGQSTALESLQLLTKFQSEALAESRNTLQELAEYG  365 (593)
Q Consensus       320 ~~SLenQ~~LL~gQ~~a~~~L~~l~~~q~~aleesr~t~q~la~~~  365 (593)
                      +.+++.=..-...-...+..+..-.+-|....++-...+..+++..
T Consensus       146 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~  191 (227)
T 1qu7_A          146 GETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVT  191 (227)
T ss_dssp             TTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444443344444444444454445555555555555555555443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=84.16  E-value=1.2e+02  Score=40.49  Aligned_cols=46  Identities=11%  Similarity=0.114  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchhhhHHH
Q 007691          167 TERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLDSIDHR  212 (593)
Q Consensus       167 TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~s~~~Q  212 (593)
                      -+.=+.||.+++..+.+.=+.+.+.+.+|.+...+....|..|...
T Consensus      1922 l~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~ 1967 (3245)
T 3vkg_A         1922 LNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555666666666555566666666655555544444444433

>4f7g_B Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} PDB: 2kbb_A 2kgx_A

Probab=83.70  E-value=5.6  Score=39.28  Aligned_cols=143  Identities=17%  Similarity=0.235  Sum_probs=80.0

Q ss_pred             cHhHhhhcCChHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHhhhhhhhcchh
Q 007691          128 AMINCLKKIDDEEHKIYLAFLLETNSICYQLQAHGFQYETERLVNELKKSADYTEHKLEIIEEKSDTLLQSSNQIHDSLD  207 (593)
Q Consensus       128 si~~Ct~~Mdd~af~vY~eF~~ht~sIC~~Lq~q~fq~~TE~tVnkL~~sS~~a~~~Le~l~e~qe~Ll~~~~~~~dsL~  207 (593)
                      .+..|++++|...+.++..-+-.-..+    -.+.||++....+..|......   .....+...++|-..+.++..++ 
T Consensus        36 ~in~~i~dLd~AsLaA~s~~L~~~~~~----s~~~~qeq~~~~~~eL~~~i~~---l~~AAk~~~e~LG~av~~~a~~~-  107 (216)
T 4f7g_B           36 ALNSCLRDLDQASLAAVSQQLAPREGI----SQEALHTQMLTAVQEISHLIEP---LASAARAEASQLGHKVSQMAQYF-  107 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCSS----CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCHHHHHHHHHHHHHTH-
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCCCc----cHHHHHHHHHHHHHHHHHhhhH---HHHhhhcCHHHHhHHHHHHHHHh-
Confidence            477788888777777666544432221    1245666555555444443332   22333444455555544433333 


Q ss_pred             hhHHHHHHHHHhhhhHHHHHHHhhhhhHHHHhhhHHHHHHHHHHH------HH----HHHHHHHHHHHHHHHHHHHHhhH
Q 007691          208 SIDHRVQNVAQTAKGVRDLMDILSRHSEVVYNQSKEIAASQTELQ------EG----QVRIKEKLDEGMATLIDAYSNLG  277 (593)
Q Consensus       208 s~~~Q~~~laet~k~v~~~i~~l~~~s~~i~Eq~~eIa~sQ~eL~------e~----q~~m~~~l~~g~a~~~esy~~l~  277 (593)
                            +.|..+++-..+.+-+ ++.+-++++++|..+.+-.+|-      .|    =..++..++++...+.|+-..+-
T Consensus       108 ------epLv~aa~gaAS~t~d-s~~Q~~lLdq~Ktv~es~lqlv~AaK~agGNPk~a~~~H~~l~eaa~~l~eai~d~~  180 (216)
T 4f7g_B          108 ------EPLTLAAVGAASKTLS-HPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLT  180 (216)
T ss_dssp             ------HHHHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHhhhhHHHHHHHHHHHHHHHH
Confidence                  5566666666555443 4556677788888777777763      11    23356667777777777766666


Q ss_pred             HHHHHHHH
Q 007691          278 KEVNNLRD  285 (593)
Q Consensus       278 ~~~ekl~~  285 (593)
                      .++++...
T Consensus       181 ~tl~~~as  188 (216)
T 4f7g_B          181 TTLNEAAS  188 (216)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00