Citrus Sinensis ID: 007695
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 592 | 2.2.26 [Sep-21-2011] | |||||||
| Q940Z1 | 316 | Pentatricopeptide repeat- | no | no | 0.503 | 0.943 | 0.568 | 2e-96 | |
| Q8LEZ4 | 372 | Protein NUCLEAR FUSION DE | no | no | 0.408 | 0.650 | 0.595 | 9e-70 | |
| Q9LPC4 | 409 | Pentatricopeptide repeat- | no | no | 0.567 | 0.821 | 0.359 | 3e-55 | |
| O04491 | 607 | Putative pentatricopeptid | no | no | 0.464 | 0.453 | 0.292 | 4e-27 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.636 | 0.437 | 0.251 | 5e-27 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.576 | 0.460 | 0.250 | 1e-25 | |
| Q9FLL3 | 527 | Pentatricopeptide repeat- | no | no | 0.559 | 0.628 | 0.256 | 2e-23 | |
| P0C8Q3 | 701 | Pentatricopeptide repeat- | no | no | 0.530 | 0.447 | 0.244 | 7e-23 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.550 | 0.356 | 0.257 | 1e-22 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.464 | 0.377 | 0.227 | 4e-22 |
| >sp|Q940Z1|PPR51_ARATH Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana GN=At1g19525 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 353 bits (905), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 170/299 (56%), Positives = 232/299 (77%), Gaps = 1/299 (0%)
Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
M++NGI PDI+T+T LVHMYSK+GN +RA EAFE+L+S+G +PD+K+Y +MI+ YVNAG+
Sbjct: 1 MSQNGIFPDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGK 60
Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP-TLESCT 401
PKLG L+ M ++ SEE+Y+ALLR++AQ GD GA I++ M+ P + E+ +
Sbjct: 61 PKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYS 120
Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461
L VEAYG+AG D+A+SNFD M +LGHKPDD+C A+++ AY +N LDKAL LLL+LEKD
Sbjct: 121 LFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKD 180
Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
G E G TYTVLVDW+ L LI EAEQLL KIS+LGEAPPF++QVSLC MY+ EKK
Sbjct: 181 GIEIGVITYTVLVDWMANLGLIEEAEQLLVKISQLGEAPPFELQVSLCCMYSGVRNEKKT 240
Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
LQALG LEAK++QMGP++F+++I+ L GGF +DA+R++ MEA+ F S+RL++ +++
Sbjct: 241 LQALGVLEAKRDQMGPNEFDKVISALKRGGFEKDARRMYKYMEARKFLPSQRLQMDMVA 299
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LEZ4|NFD5_ARATH Protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial OS=Arabidopsis thaliana GN=NFD5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (676), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/245 (59%), Positives = 187/245 (76%), Gaps = 3/245 (1%)
Query: 1 MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
MLL+IV KVV E+E+GG + + SA SPS +FS+DLW T+WEVSN VL+DMEK RKKEK
Sbjct: 127 MLLLIVEKVVEEIERGGFNK-VGSAPPSPSSEFSDDLWATIWEVSNTVLKDMEKERKKEK 185
Query: 61 MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
MK ++QS +V EM RFAGEIGIRGD+LRELRFKWARE+M+++EFYE LE+ R N+
Sbjct: 186 MKQYVQSPEVMEMCRFAGEIGIRGDLLRELRFKWAREKMDDAEFYESLEQQRDLDNSIRE 245
Query: 121 GEKAEGKAAAE--CAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEM 178
E +G+ E E + + I+LPKR GK+KYKIYGL+LSDPKW E+A+KIHE E
Sbjct: 246 SETVDGEVEEEGFVPSDEVESRSISLPKRKGKLKYKIYGLELSDPKWVEMADKIHEAEEE 305
Query: 179 ILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
EPKP+TGKCKL+ +K+ SL++ +DPS LLAEW ELL+P+R+DWI L+++LRE NT
Sbjct: 306 ADWREPKPVTGKCKLVMEKLESLQEGDDPSGLLAEWAELLEPNRVDWIALINQLREGNTH 365
Query: 239 LYFKV 243
Y KV
Sbjct: 366 AYLKV 370
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPC4|PPR1_ARATH Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana GN=At1g01970 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 183/337 (54%), Gaps = 1/337 (0%)
Query: 165 WTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDP-SPLLAEWKELLQPSRI 223
W +V + E + + P ++ +C+ + +I+ E+ LL W + P R
Sbjct: 72 WADVGLNLTEEQDEAITRIPIKMSKRCQALMRQIICFSPEKGSFCDLLGAWLRRMNPIRA 131
Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
DW+++L L+ ++ Y KVAE L ++SF+ N RDY+K+I + K N +EDAER L M
Sbjct: 132 DWLSILKELKNLDSPFYIKVAEFSLLQDSFEANARDYTKIIHYYGKLNQVEDAERTLLSM 191
Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
G + D VT T +V +YSKAG A+E F ++ G D + Y SMIMAY+ AG P
Sbjct: 192 KNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEIKLLGEPLDYRSYGSMIMAYIRAGVP 251
Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
+ G SL+ M + I E+Y ALLR ++ GD GA ++ + ++I P ++ C LL
Sbjct: 252 EKGESLLREMDSQEICAGREVYKALLRDYSMGGDAEGAKRVFDAVQIAGITPDVKLCGLL 311
Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF 463
+ AY +G AR F+ M + G K D+C A ++AAY K+ L++AL L+ELEKD
Sbjct: 312 INAYSVSGQSQNARLAFENMRKAGIKATDKCVALVLAAYEKEEKLNEALGFLVELEKDSI 371
Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
G VL W +L ++ E E LL + S P
Sbjct: 372 MLGKEASAVLAQWFKKLGVVEEVELLLREFSSSQSQP 408
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680 OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 139/297 (46%), Gaps = 22/297 (7%)
Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQT-----------NVRDYSKL 263
K LQP+ + + L++ Y KV L +E F+ +V YS L
Sbjct: 268 KRSLQPTVVSFNTLING--------YCKVGNL---DEGFRLKHQMEKSRTRPDVFTYSAL 316
Query: 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323
I+A KEN ++ A + +M + G++P+ V T L+H +S+ G +D KE+++ + S G
Sbjct: 317 INALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGL 376
Query: 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383
QPD +YN+++ + G ++VD MI G+ + Y L+ F + GDV A +
Sbjct: 377 QPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALE 436
Query: 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
I M + + LV + G A M+R G KPDD M+ A+
Sbjct: 437 IRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFC 496
Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
KK LL E++ DG P TY VL++ L +L + A+ LL + +G P
Sbjct: 497 KKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/393 (25%), Positives = 163/393 (41%), Gaps = 16/393 (4%)
Query: 197 KILSLEKEEDPSPLLAEWKELLQPSR---IDWINLLDRLREQNTQLYFKVAELVLSEESF 253
++L K E SP + + ++ +DW LL E + E
Sbjct: 197 ELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAE-------------MRHEGI 243
Query: 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313
Q ++ Y+ L+ A A ++AE + + MN+ GIVPD+ T + LV + K L++ +
Sbjct: 244 QPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCD 303
Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373
+ S G PD YN ++ AY +G K M + M +G + Y LL F
Sbjct: 304 LLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFG 363
Query: 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433
Q G Q+ M+ P + +L+E +G+ G + + F M+ +PD
Sbjct: 364 QSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDME 423
Query: 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493
+I A GK L + A +L + + P YT +++ G+ L EA +
Sbjct: 424 TYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTM 483
Query: 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553
E+G P + SL +AR G+ K++ L L D F I GG
Sbjct: 484 HEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543
Query: 554 QDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
++A + + ME ER A++S +F R
Sbjct: 544 EEAVKTYVDMEKSRCDPDERTLEAVLSVYSFAR 576
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Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 158/347 (45%), Gaps = 6/347 (1%)
Query: 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282
I ++ L R++E + L L++ + + +V YS +++ + + L+ ++++
Sbjct: 253 IHFVCQLGRIKEAHHLL------LLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 306
Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
M G+ P+ ++ + + L A+EAF + G PD VY ++I + G
Sbjct: 307 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 366
Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402
+ M + I Y A++ F Q GD+ AG++ + M + +P + T
Sbjct: 367 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426
Query: 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462
L+ Y +AG A ++MI+ G P+ ++I K+ LD A LL E+ K G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486
Query: 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522
+P TY +V+ L + I EA +L+G+ G +L D Y ++G KA
Sbjct: 487 LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 546
Query: 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569
+ L + K Q F ++NG G L+D +++ M A+G A
Sbjct: 547 EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIA 593
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 157/339 (46%), Gaps = 8/339 (2%)
Query: 227 NLLDRLREQNTQLYFKVAEL-VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
NLL Q++Q Y + L + + F+ ++ ++ LI+ N +E+A ++ +M E
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170
Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
GI PD+V T ++ K G+++ A F+ + ++G +PD +Y S++ N+G+ +
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRD 230
Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
SL+ M I+ + AL+ +F + G A ++ N M P + + T L+
Sbjct: 231 ADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLIN 290
Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465
+ G D+AR F M G PD S+I + K +D A+ + E+ + G
Sbjct: 291 GFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTG 350
Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
TYT L+ G++ N A+++ + G P + L G KKAL
Sbjct: 351 NTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMI- 409
Query: 526 GFLEAKKEQM---GPD--DFERIINGLLAGGFLQDAQRV 559
F + +K +M P+ + +++GL G L+ A V
Sbjct: 410 -FEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMV 447
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 147/319 (46%), Gaps = 5/319 (1%)
Query: 214 WKELLQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272
WK P+ L+D L ++ T+ F++ ++ ++++ NV Y+ +I + KE+
Sbjct: 318 WK----PNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDK 373
Query: 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332
L AE + +M E G+ P++ T T L++ + KAG+ RA E + GF P+ YN+
Sbjct: 374 LNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNA 433
Query: 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392
I + + L++ + G+E Y L++ + D+ A M
Sbjct: 434 AIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTG 493
Query: 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452
F+ + +L+ A+ + ++ F ++ LG P SMI+ Y K+ +D AL
Sbjct: 494 FEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLAL 553
Query: 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
+++ G P TY L+ L + +++EA +L + + G +PP +V+L Y
Sbjct: 554 KYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEY 613
Query: 513 ARAGIEKKALQALGFLEAK 531
+ A+ L L+ K
Sbjct: 614 CKRNDSANAMILLEPLDKK 632
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 159/345 (46%), Gaps = 19/345 (5%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
+V Y+ LID + + A R+L MN+ G+VPD T T ++ K+ ++ A + F
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLF 520
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375
+SL G P+ +Y ++I Y AG+ +++ M++ + + AL+
Sbjct: 521 DSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCAD 580
Query: 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435
G ++ A + M QPT+ + T+L+ + GD D A S F M+ G KPD
Sbjct: 581 GKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTY 640
Query: 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495
+ I Y ++ L A +++ ++ ++G P TY+ L+ G L N A +L ++ +
Sbjct: 641 TTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRD 700
Query: 496 LGEAPPFKIQVSLCDM-----YARAGIEKKALQALG----------FLEAKKEQ-MGPD- 538
G P +SL Y + + L A+ LE E + P+
Sbjct: 701 TGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNA 760
Query: 539 -DFERIINGLLAGGFLQDAQRVHGLME-AQGFAASERLKVALISS 581
+E++I G+ G L+ A++V M+ +G + SE + AL+S
Sbjct: 761 KSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSC 805
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 145/312 (46%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+S NV + +++A K+ +E L ++ E G+ PDIVT L+ YS G
Sbjct: 226 ISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGL 285
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
++ A E ++ GF P YN++I G+ + + M+ SG+ Y +
Sbjct: 286 MEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS 345
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
LL + GDV ++ + MR + P L + ++ + ++G+ D+A F+ + G
Sbjct: 346 LLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 405
Query: 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487
PD+ +I Y +K ++ A+NL E+ + G TY ++ L + +++ EA+
Sbjct: 406 LIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEAD 465
Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
+L +++E P L D + + G + A++ ++ K+ ++ + +++G
Sbjct: 466 KLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGF 525
Query: 548 LAGGFLQDAQRV 559
G + A+ +
Sbjct: 526 GKVGDIDTAKEI 537
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 592 | ||||||
| 302142507 | 747 | unnamed protein product [Vitis vinifera] | 1.0 | 0.792 | 0.747 | 0.0 | |
| 225458257 | 720 | PREDICTED: protein NUCLEAR FUSION DEFECT | 1.0 | 0.822 | 0.747 | 0.0 | |
| 449470136 | 717 | PREDICTED: protein NUCLEAR FUSION DEFECT | 0.991 | 0.818 | 0.708 | 0.0 | |
| 255538676 | 719 | pentatricopeptide repeat-containing prot | 0.984 | 0.810 | 0.696 | 0.0 | |
| 449520042 | 717 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.991 | 0.818 | 0.705 | 0.0 | |
| 356553875 | 691 | PREDICTED: pentatricopeptide repeat-cont | 0.954 | 0.817 | 0.641 | 0.0 | |
| 356564280 | 693 | PREDICTED: putative pentatricopeptide re | 0.962 | 0.822 | 0.635 | 0.0 | |
| 186478661 | 725 | pentatricopeptide repeat-containing prot | 0.978 | 0.798 | 0.586 | 0.0 | |
| 297844926 | 724 | F18O14.27 [Arabidopsis lyrata subsp. lyr | 0.978 | 0.799 | 0.590 | 0.0 | |
| 357142830 | 780 | PREDICTED: uncharacterized protein LOC10 | 0.902 | 0.684 | 0.501 | 1e-143 |
| >gi|302142507|emb|CBI19710.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/594 (74%), Positives = 523/594 (88%), Gaps = 2/594 (0%)
Query: 1 MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
MLL+IV KVVSEMEKGGLE+M+ +A A+PSQDFSEDLW+TVWEVSNLVL+DM+KAR KEK
Sbjct: 127 MLLIIVRKVVSEMEKGGLEQMLSAAVAAPSQDFSEDLWKTVWEVSNLVLDDMKKARNKEK 186
Query: 61 MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
MKGFLQS++VKEMSRFAGEIGIRGDMLRELRFKWARE+MEESEFY+ L+ LR+EA A+E
Sbjct: 187 MKGFLQSEEVKEMSRFAGEIGIRGDMLRELRFKWAREKMEESEFYQSLDHLREEAQAEEG 246
Query: 121 GEKA--EGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEM 178
E E + E E+K KV++LPKRHGKI+Y+IYGLDLSDPKWTEVA+K+HER E+
Sbjct: 247 EEAVGNEEVIGDDLVEDEKKEKVVSLPKRHGKIRYEIYGLDLSDPKWTEVADKVHEREEI 306
Query: 179 ILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
I P+EPKPI+GKCKLIT+KIL++++E+DPSPLL EW ELLQPSRIDWI LLDRL+E N+
Sbjct: 307 IWPQEPKPISGKCKLITEKILNMKEEDDPSPLLDEWAELLQPSRIDWITLLDRLKENNSH 366
Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
LYFKVAELVLS++SFQTN+RDYSKLID HAKEN +EDAERILKKMNEN I+PDI+TSTVL
Sbjct: 367 LYFKVAELVLSKKSFQTNIRDYSKLIDVHAKENRVEDAERILKKMNENDILPDILTSTVL 426
Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
VHMYSKAGNL+RAKEAFE LRS GFQPD +VYNSMIMAYVNAGQPKLG SL+ M I
Sbjct: 427 VHMYSKAGNLERAKEAFEGLRSQGFQPDTRVYNSMIMAYVNAGQPKLGESLMREMEARDI 486
Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
+ ++EIY++LL+SFAQ GD+ GA +I+ M+ FQP+LESCTLLVEAYGQAGDPDQAR+
Sbjct: 487 KPTKEIYMSLLQSFAQRGDIGGAQRISTTMQFAGFQPSLESCTLLVEAYGQAGDPDQARN 546
Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
+FDYMI++GH+PDDRCTASMIAAY K NLLDKALNLLL+LEKDGFEPG ATY VLVDWLG
Sbjct: 547 SFDYMIKVGHRPDDRCTASMIAAYEKGNLLDKALNLLLQLEKDGFEPGVATYVVLVDWLG 606
Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
++QL++EAEQLLGKI+E GEAPP K VSLCDMY+RAG+EKKALQALG +EAKKEQ+ P+
Sbjct: 607 KMQLVDEAEQLLGKIAEQGEAPPLKFHVSLCDMYSRAGVEKKALQALGVVEAKKEQLNPE 666
Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
DFERII GL+AGGF+QDA+R+HG+ME QGF ASE+LK+ L+SSQ R+R R
Sbjct: 667 DFERIIKGLIAGGFVQDARRIHGVMETQGFTASEQLKIILMSSQAVGRERPTLR 720
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458257|ref|XP_002281331.1| PREDICTED: protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/594 (74%), Positives = 523/594 (88%), Gaps = 2/594 (0%)
Query: 1 MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
MLL+IV KVVSEMEKGGLE+M+ +A A+PSQDFSEDLW+TVWEVSNLVL+DM+KAR KEK
Sbjct: 127 MLLIIVRKVVSEMEKGGLEQMLSAAVAAPSQDFSEDLWKTVWEVSNLVLDDMKKARNKEK 186
Query: 61 MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
MKGFLQS++VKEMSRFAGEIGIRGDMLRELRFKWARE+MEESEFY+ L+ LR+EA A+E
Sbjct: 187 MKGFLQSEEVKEMSRFAGEIGIRGDMLRELRFKWAREKMEESEFYQSLDHLREEAQAEEG 246
Query: 121 GEKA--EGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEM 178
E E + E E+K KV++LPKRHGKI+Y+IYGLDLSDPKWTEVA+K+HER E+
Sbjct: 247 EEAVGNEEVIGDDLVEDEKKEKVVSLPKRHGKIRYEIYGLDLSDPKWTEVADKVHEREEI 306
Query: 179 ILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
I P+EPKPI+GKCKLIT+KIL++++E+DPSPLL EW ELLQPSRIDWI LLDRL+E N+
Sbjct: 307 IWPQEPKPISGKCKLITEKILNMKEEDDPSPLLDEWAELLQPSRIDWITLLDRLKENNSH 366
Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
LYFKVAELVLS++SFQTN+RDYSKLID HAKEN +EDAERILKKMNEN I+PDI+TSTVL
Sbjct: 367 LYFKVAELVLSKKSFQTNIRDYSKLIDVHAKENRVEDAERILKKMNENDILPDILTSTVL 426
Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
VHMYSKAGNL+RAKEAFE LRS GFQPD +VYNSMIMAYVNAGQPKLG SL+ M I
Sbjct: 427 VHMYSKAGNLERAKEAFEGLRSQGFQPDTRVYNSMIMAYVNAGQPKLGESLMREMEARDI 486
Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418
+ ++EIY++LL+SFAQ GD+ GA +I+ M+ FQP+LESCTLLVEAYGQAGDPDQAR+
Sbjct: 487 KPTKEIYMSLLQSFAQRGDIGGAQRISTTMQFAGFQPSLESCTLLVEAYGQAGDPDQARN 546
Query: 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
+FDYMI++GH+PDDRCTASMIAAY K NLLDKALNLLL+LEKDGFEPG ATY VLVDWLG
Sbjct: 547 SFDYMIKVGHRPDDRCTASMIAAYEKGNLLDKALNLLLQLEKDGFEPGVATYVVLVDWLG 606
Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
++QL++EAEQLLGKI+E GEAPP K VSLCDMY+RAG+EKKALQALG +EAKKEQ+ P+
Sbjct: 607 KMQLVDEAEQLLGKIAEQGEAPPLKFHVSLCDMYSRAGVEKKALQALGVVEAKKEQLNPE 666
Query: 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQPTR 592
DFERII GL+AGGF+QDA+R+HG+ME QGF ASE+LK+ L+SSQ R+R R
Sbjct: 667 DFERIIKGLIAGGFVQDARRIHGVMETQGFTASEQLKIILMSSQAVGRERPTLR 720
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470136|ref|XP_004152774.1| PREDICTED: protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/590 (70%), Positives = 496/590 (84%), Gaps = 3/590 (0%)
Query: 1 MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
MLLMIV KVVSEMEKG E+ +++++ +P D SEDLW+TV EVSN+VL+DM+KA KKEK
Sbjct: 131 MLLMIVEKVVSEMEKGRFEQTLKASTDNPDWDLSEDLWKTVTEVSNMVLDDMKKATKKEK 190
Query: 61 MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
MKGFL S +V+EM RFAGE+GIRGDMLRE RFKWARE+MEESEFYE LE+LRKEA QE
Sbjct: 191 MKGFLLSREVQEMCRFAGEVGIRGDMLREFRFKWAREKMEESEFYESLEQLRKEARTQE- 249
Query: 121 GEKAEGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMIL 180
E + + AE A E K + ++LPKR GK+KYKIYGLDLSDPKW+E+A+K+H ++IL
Sbjct: 250 -ENKDSASGAEAAS-EVKSEAVSLPKRRGKLKYKIYGLDLSDPKWSELADKLHVAEKLIL 307
Query: 181 PEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLY 240
P+EPKPI+G CKL+T+KIL L + +DPSPLLAEWKELLQP+RIDWI LLDRL E+N LY
Sbjct: 308 PQEPKPISGMCKLVTEKILLLNENDDPSPLLAEWKELLQPTRIDWITLLDRLNEKNRFLY 367
Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
FKVAEL+LSEESFQTN+RDYSKLI+ +AKEN LEDAERIL KMNE GI PDI+T+ L+H
Sbjct: 368 FKVAELLLSEESFQTNIRDYSKLIEVYAKENRLEDAERILVKMNEKGIAPDILTTIYLIH 427
Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
MYSKAGNLD AK+AF+SLRSHGFQPD+KVYNSMIMAYVNAGQPKLG SL+ M I+
Sbjct: 428 MYSKAGNLDSAKKAFDSLRSHGFQPDEKVYNSMIMAYVNAGQPKLGESLMRDMEARDIKP 487
Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
S++IY+ALLRSF+QCG V GAG+I M+ P LESCTLLVEAYGQAGDPD+AR+NF
Sbjct: 488 SQDIYMALLRSFSQCGYVSGAGRIAATMQFAGISPNLESCTLLVEAYGQAGDPDKARNNF 547
Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
DYMI+LGH PDDRCTASMIAAY KKNLLDKAL+LLL+LEKDGFEPG ATY VLVDWLG+L
Sbjct: 548 DYMIKLGHAPDDRCTASMIAAYEKKNLLDKALDLLLQLEKDGFEPGLATYAVLVDWLGKL 607
Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
QL+ EAEQ+L KI G P K+++SLCDMY+RAGIEKKALQAL LEAKK+++G DDF
Sbjct: 608 QLVEEAEQVLAKIGAQGHYLPIKVRISLCDMYSRAGIEKKALQALKILEAKKQELGHDDF 667
Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQP 590
ERIINGL+AGGFLQDA+R+ G+MEAQGF AS+ L++AL +SQ +R P
Sbjct: 668 ERIINGLVAGGFLQDAKRMEGVMEAQGFIASQPLQMALRTSQALRGKRLP 717
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255538676|ref|XP_002510403.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223551104|gb|EEF52590.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/603 (69%), Positives = 491/603 (81%), Gaps = 20/603 (3%)
Query: 1 MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
MLL+IVGKVVSEMEKG E+M+ ++ A+PSQD SEDLWRTVWEVSNLVLEDMEK RKKEK
Sbjct: 125 MLLIIVGKVVSEMEKGSPEQMLGASGAAPSQDLSEDLWRTVWEVSNLVLEDMEKERKKEK 184
Query: 61 MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEA----- 115
MKGFLQS++VKEM RFAGEIGIRGDMLRELRFKWA E+MEESEFY LE+LR+E
Sbjct: 185 MKGFLQSEEVKEMCRFAGEIGIRGDMLRELRFKWAHEKMEESEFYASLEKLREEERTQEK 244
Query: 116 ------NAQEMGEKAEGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVA 169
N + MGE E EEK KV ++PKRHGKI+YKIYGLDLSDPKW EVA
Sbjct: 245 EEADAKNYEPMGE--------EAVMGEEKLKVKSIPKRHGKIRYKIYGLDLSDPKWVEVA 296
Query: 170 EKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLL 229
+KIHE G +I P+EPKPI GK KL+T+KILSL++E+DPS LLAEW ELLQP+R+DW+ LL
Sbjct: 297 DKIHETGAIIWPQEPKPINGKSKLVTEKILSLKEEDDPSQLLAEWAELLQPNRVDWLTLL 356
Query: 230 DRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV 289
D+L+E+N Q +FKVAE +L+E+SFQ N+RDYS LIDAHA +N +ED ERIL+KMNENGI
Sbjct: 357 DKLKEKNMQTFFKVAEHLLNEKSFQPNIRDYSVLIDAHATKNQIEDVERILEKMNENGIF 416
Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349
PDI ST LVHMYSKAGN DR KEAF LRSHGFQPD KVYNSMIMA VNAGQPKLG S
Sbjct: 417 PDISASTALVHMYSKAGNFDRTKEAFGRLRSHGFQPDIKVYNSMIMASVNAGQPKLGDSF 476
Query: 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409
V M I+ +EE+Y ALLRSFAQ GDV A +I M+ FQP LE TLLVEA+G+
Sbjct: 477 VREMEARDIKPTEEMYFALLRSFAQLGDVSEAHKIATAMQFAGFQPNLEFYTLLVEAHGR 536
Query: 410 AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
AG PDQAR NFD MI++G +PDDR AS+IAAY KKNLLD+AL++LL+L+KDGFEPG AT
Sbjct: 537 AGQPDQARRNFDQMIKVGFRPDDRVAASLIAAYEKKNLLDEALDILLQLKKDGFEPGLAT 596
Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
TVLVDWL +LQL++EAEQLLGKI+E GEAPPFKIQVSLCDMYAR G EKKALQ LG LE
Sbjct: 597 CTVLVDWLAKLQLVDEAEQLLGKIAEQGEAPPFKIQVSLCDMYARVGNEKKALQVLGVLE 656
Query: 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQ 589
AKKEQ+G +DFER+I+GL+AG F+Q+A RVH LMEAQG++ASE+L VAL +SQ F+ +R
Sbjct: 657 AKKEQLGSNDFERVIHGLIAGRFVQEATRVHALMEAQGYSASEQLVVALRASQAFSPKR- 715
Query: 590 PTR 592
PT+
Sbjct: 716 PTK 718
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520042|ref|XP_004167043.1| PREDICTED: LOW QUALITY PROTEIN: protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/590 (70%), Positives = 494/590 (83%), Gaps = 3/590 (0%)
Query: 1 MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
MLLMIV KVVSEMEKG E+ +++++ +P D SEDLW+TV EVSN+VL+DM+KA KKEK
Sbjct: 131 MLLMIVEKVVSEMEKGRFEQTLKASTDNPDWDLSEDLWKTVTEVSNMVLDDMKKATKKEK 190
Query: 61 MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
MKGFL S +V+EM RFAGE+GIRGDMLRE RFKWARE+MEESEFYE LE+LRKEA QE
Sbjct: 191 MKGFLLSREVQEMCRFAGEVGIRGDMLREFRFKWAREKMEESEFYESLEQLRKEARTQE- 249
Query: 121 GEKAEGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMIL 180
E + + AE A E K + ++LPKR GK+KYKIYGLDLSDPKW+E+A+K+H ++IL
Sbjct: 250 -ENKDSASGAEAAS-EVKSEAVSLPKRRGKLKYKIYGLDLSDPKWSELADKLHVAEKLIL 307
Query: 181 PEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLY 240
P+EPKPI+G CKL+T+KIL L + +DPSPLLAEWKELLQP+RIDWI LLDRL E+N LY
Sbjct: 308 PQEPKPISGMCKLVTEKILLLNENDDPSPLLAEWKELLQPTRIDWITLLDRLNEKNRFLY 367
Query: 241 FKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300
FKVAEL+LSEESFQTN+RDYSKLI+ +AKEN LEDAERIL KMNE GI PDI+T+ L+H
Sbjct: 368 FKVAELLLSEESFQTNIRDYSKLIEVYAKENRLEDAERILVKMNEKGIAPDILTTIYLIH 427
Query: 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER 360
MYSKAGNLD AK+AF+SLRSHGFQPD+KVYNSMIMAYVNAGQPKLG SL+ M I+
Sbjct: 428 MYSKAGNLDSAKKAFDSLRSHGFQPDEKVYNSMIMAYVNAGQPKLGESLMRDMEARDIKP 487
Query: 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
S++IY+ALLRSF+QCG V GAG+I M+ P LESCTLLV AYGQAGDPD+AR+NF
Sbjct: 488 SQDIYMALLRSFSQCGYVSGAGRIAATMQFAGISPNLESCTLLVXAYGQAGDPDKARNNF 547
Query: 421 DYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480
DYMI+LGH PDDRCTASMIAAY KKNLLDKAL+LLL+LEKDGFEPG ATY VLVDWLG+L
Sbjct: 548 DYMIKLGHAPDDRCTASMIAAYEKKNLLDKALDLLLQLEKDGFEPGLATYAVLVDWLGKL 607
Query: 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540
QL+ EAEQ+L KI G P K+++SLCDMY+RAGIEKKALQAL LEAK +++G DDF
Sbjct: 608 QLVEEAEQVLAKIGAQGHYLPIKVRISLCDMYSRAGIEKKALQALKILEAKXQELGHDDF 667
Query: 541 ERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNRQRQP 590
ERIINGL+AGGFLQDA+R+ G+MEAQGF AS+ L++AL +SQ +R P
Sbjct: 668 ERIINGLVAGGFLQDAKRMEGVMEAQGFIASQPLQMALRTSQALRGKRLP 717
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553875|ref|XP_003545276.1| PREDICTED: pentatricopeptide repeat-containing protein At3g07290, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/589 (64%), Positives = 458/589 (77%), Gaps = 24/589 (4%)
Query: 1 MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
ML IV + VSEMEKGG+E M S+ S DFSEDLWRTVWEVSNLVLEDM+K KKEK
Sbjct: 105 MLFAIVERFVSEMEKGGIETM----SSFRSADFSEDLWRTVWEVSNLVLEDMDKEIKKEK 160
Query: 61 MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
MKGFLQ ++VKEM RFAGE+GIRGD+LRELRFKWARE++EE EFYEGLERLRKE
Sbjct: 161 MKGFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKLEEHEFYEGLERLRKET----- 215
Query: 121 GEKAEGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMIL 180
++EG A E +EK V+ LPKR GKI+YKIYGLDLSDPKW +VA++IHE ++
Sbjct: 216 --QSEGNAIDVPKEEKEK-VVVGLPKRRGKIRYKIYGLDLSDPKWAQVADRIHEAEQVFW 272
Query: 181 PEEPKPITGKCKLITDKIL-------SLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLR 233
P+EPKPITGK K++T KIL E+E+ LLAEW EL+QPSR++W++LLD+L+
Sbjct: 273 PQEPKPITGKAKIVTTKILLSKEEEEEEEEEDGLQSLLAEWVELVQPSRVEWMDLLDKLK 332
Query: 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV 293
E N LYFKVAE+VL+E+SFQT+V DYS+LID +AKEN +D ER+LKK+NENG+ D
Sbjct: 333 EHNPGLYFKVAEMVLTEDSFQTHVSDYSRLIDIYAKENRFDDVERMLKKLNENGLQVDAS 392
Query: 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353
++ LV MY K G+L AKEAFE L S GFQPD VYNSMI A VN GQPKLG L+ M
Sbjct: 393 IASTLVLMYCKRGDLAHAKEAFEVLTSLGFQPDAHVYNSMITALVNNGQPKLGEKLMRDM 452
Query: 354 ITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP--TLESCTLLVEAYGQA- 410
I +++IY+ALLRSF+Q GD GA +I+N M+ Q +E+ TLL+EA A
Sbjct: 453 DDRHIPITKDIYMALLRSFSQLGDAVGAERISNTMQFAGIQQGMDMETSTLLIEASALAV 512
Query: 411 -GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT 469
+PDQARS+FDYMI+LGHKPDDRCTASMI+AY KKN LD ALNLLLELEKDGFEPG AT
Sbjct: 513 PCNPDQARSHFDYMIKLGHKPDDRCTASMISAYEKKNYLDNALNLLLELEKDGFEPGVAT 572
Query: 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529
Y+VLVDWLG+LQL++EAEQLLGKI+ LGEAPPFK+QVSLCDMYARAG EKKALQ+LG LE
Sbjct: 573 YSVLVDWLGKLQLVDEAEQLLGKIALLGEAPPFKLQVSLCDMYARAGNEKKALQSLGVLE 632
Query: 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
A+K+++G +FERI++GL+ GGF +DAQR+ +MEAQGF AS R+K L
Sbjct: 633 ARKDELGQAEFERILSGLIDGGFQKDAQRISQIMEAQGFDAS-RVKFKL 680
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564280|ref|XP_003550383.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290-like isoform 1 [Glycine max] gi|356564282|ref|XP_003550384.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/582 (63%), Positives = 451/582 (77%), Gaps = 12/582 (2%)
Query: 1 MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
ML+ IV VVSEMEKG + ++S S DFSEDLWRTVWEVS+LVLEDM K KKEK
Sbjct: 109 MLVAIVEMVVSEMEKGSIG---TTSSLFCSADFSEDLWRTVWEVSSLVLEDMNKEIKKEK 165
Query: 61 MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
MK FLQ ++VKEM RFAGE+GIRGD+LRELRFKWARE+MEE EFYEGLERLR+EA ++
Sbjct: 166 MKSFLQCEEVKEMCRFAGEVGIRGDLLRELRFKWAREKMEEHEFYEGLERLREEARSEGN 225
Query: 121 GEKAEGKAAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEMIL 180
G E E ++ V+ LPKR G I+YKIYGLDLSD KW +VA++IHE ++
Sbjct: 226 GIGV----ITEKKEKVKEKVVVGLPKRRGNIRYKIYGLDLSDSKWAQVADRIHEAEQVFW 281
Query: 181 PEEPKPITGKCKLITDKILSLEKEEDPS--PLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
P+EPKPITGK K++ KILS ++E+D LLAEW EL+QPSR++W++LLD+L+EQN
Sbjct: 282 PQEPKPITGKAKIVIAKILSSKEEDDDGLQSLLAEWVELVQPSRVEWMDLLDKLKEQNHG 341
Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
LY KVAE+VL+E+SFQTNV DYS+LID +AKEN +D ER+LKK+NENG+ D ++ L
Sbjct: 342 LYLKVAEMVLAEDSFQTNVSDYSRLIDIYAKENRFDDVERMLKKLNENGLQVDASIASTL 401
Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
V MY K GNL RA EAF L S GFQPD VYNSMIM +VN GQPKLG L+ M I
Sbjct: 402 VLMYCKGGNLARATEAFGVLTSLGFQPDAHVYNSMIMTFVNNGQPKLGEKLMRDMDDRLI 461
Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL--ESCTLLVEAYGQAGDPDQA 416
+++IY+ALLRS++Q GDV A +I+ M+ Q + E+CTLLVEAY A +PDQA
Sbjct: 462 TITKDIYMALLRSYSQLGDVASAERISTTMQFAGIQQSTDKETCTLLVEAYALASNPDQA 521
Query: 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476
RS+FD MI+ GH+PDDRCTASMI AY KKN LD ALNLLLELEKDGFEPG ATY+VLVDW
Sbjct: 522 RSHFDCMIKSGHQPDDRCTASMILAYEKKNDLDNALNLLLELEKDGFEPGVATYSVLVDW 581
Query: 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG 536
LG+LQL++EAEQLLGKI+ LGEAPPFK+QVSLCDMYARAG EKKALQ+LG LEA+K+++G
Sbjct: 582 LGKLQLVDEAEQLLGKIALLGEAPPFKLQVSLCDMYARAGNEKKALQSLGVLEARKDELG 641
Query: 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVAL 578
+FERII+GL+ GGF +DAQR+ +MEAQGF AS R+K L
Sbjct: 642 QAEFERIISGLIDGGFQKDAQRICQIMEAQGFDAS-RVKFKL 682
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186478661|ref|NP_564088.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|8778424|gb|AAF79432.1|AC025808_14 F18O14.27 [Arabidopsis thaliana] gi|332191742|gb|AEE29863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/583 (58%), Positives = 449/583 (77%), Gaps = 4/583 (0%)
Query: 1 MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
MLL+IV KVV E+E+GG + + SA SPS +FS+DLW T+WEVSN VL+DMEK RKKEK
Sbjct: 127 MLLLIVEKVVEEIERGGFNK-VGSAPPSPSSEFSDDLWATIWEVSNTVLKDMEKERKKEK 185
Query: 61 MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
MK ++QS +V EM RFAGEIGIRGD+LRELRFKWARE+M+++EFYE LE+ R N+
Sbjct: 186 MKQYVQSPEVMEMCRFAGEIGIRGDLLRELRFKWAREKMDDAEFYESLEQQRDLDNSIRE 245
Query: 121 GEKAEGKAAAE--CAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEM 178
E +G+ E E + + I+LPKR GK+KYKIYGL+LSDPKW E+A+KIHE E
Sbjct: 246 SETVDGEVEEEGFVPSDEVESRSISLPKRKGKLKYKIYGLELSDPKWVEMADKIHEAEEE 305
Query: 179 ILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
EPKP+TGKCKL+ +K+ SL++ +DPS LLAEW ELL+P+R+DWI L+++LRE NT
Sbjct: 306 ADWREPKPVTGKCKLVMEKLESLQEGDDPSGLLAEWAELLEPNRVDWIALINQLREGNTH 365
Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
Y KVAE VL E+SF ++ DYSKLI HAKEN +ED ERILKKM++NGI PDI+T+T L
Sbjct: 366 AYLKVAEGVLDEKSFNASISDYSKLIHIHAKENHIEDVERILKKMSQNGIFPDILTATAL 425
Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
VHMYSK+GN +RA EAFE+L+S+G +PD+K+Y +MI+ YVNAG+PKLG L+ M +
Sbjct: 426 VHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGKPKLGERLMKEMQAKEL 485
Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP-TLESCTLLVEAYGQAGDPDQAR 417
+ SEE+Y+ALLR++AQ GD GA I++ M+ P + E+ +L VEAYG+AG D+A+
Sbjct: 486 KASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYSLFVEAYGKAGQVDKAK 545
Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
SNFD M +LGHKPDD+C A+++ AY +N LDKAL LLL+LEKDG E G TYTVLVDW+
Sbjct: 546 SNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKDGIEIGVITYTVLVDWM 605
Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
L LI EAEQLL KIS+LGEAPPF++QVSLC MY+ EKK LQALG LEAK++QMGP
Sbjct: 606 ANLGLIEEAEQLLVKISQLGEAPPFELQVSLCCMYSGVRNEKKTLQALGVLEAKRDQMGP 665
Query: 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
++F+++I+ L GGF +DA+R++ MEA+ F S+RL++ +++
Sbjct: 666 NEFDKVISALKRGGFEKDARRMYKYMEARKFLPSQRLQMDMVA 708
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844926|ref|XP_002890344.1| F18O14.27 [Arabidopsis lyrata subsp. lyrata] gi|297336186|gb|EFH66603.1| F18O14.27 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/583 (59%), Positives = 445/583 (76%), Gaps = 4/583 (0%)
Query: 1 MLLMIVGKVVSEMEKGGLERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEK 60
MLL+IV KVV E+E+GG + + SA SPS +FS+DLW T+WEVSN VL+DMEK RKKEK
Sbjct: 129 MLLLIVEKVVEEIERGGFNK-VGSAPPSPSSEFSDDLWATIWEVSNTVLKDMEKERKKEK 187
Query: 61 MKGFLQSDKVKEMSRFAGEIGIRGDMLRELRFKWAREEMEESEFYEGLERLRKEANAQEM 120
MK ++QS +V EM RFAGEIGIRGD+LRELRFKWARE+ME++EFYE LE+ R NA
Sbjct: 188 MKQYIQSPEVMEMCRFAGEIGIRGDLLRELRFKWAREKMEDAEFYESLEQQRDLDNAIRD 247
Query: 121 GEKAEGKAAAE--CAEVEEKPKVITLPKRHGKIKYKIYGLDLSDPKWTEVAEKIHERGEM 178
E +G+ E E + + I+LPKR GK KYK YGL+LSDPKW E+A++IHE E
Sbjct: 248 SETVDGEVEEEGFVPSDEIESRSISLPKRKGKFKYKSYGLELSDPKWVEMADRIHEAEEE 307
Query: 179 ILPEEPKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
EPKP+TGKCKL+ +K+ SL++ +DPS LLAEW ELL+P+R+DWI LL++LRE NT
Sbjct: 308 ADWREPKPVTGKCKLVMEKLESLQEGDDPSGLLAEWAELLEPNRVDWIALLNQLREGNTN 367
Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
Y +VAE VL E+SF ++ DYSKLI HAKEN +ED ERILKKM++NGI PDI+T+T L
Sbjct: 368 AYLQVAERVLDEKSFNASISDYSKLIHIHAKENHIEDVERILKKMSQNGIFPDILTATSL 427
Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
VHMYSK+GNL+RA EAFE+L+S+G + D+K+Y +MIM YVNAG+PKLG LV M +
Sbjct: 428 VHMYSKSGNLERATEAFENLKSYGLRLDEKIYEAMIMGYVNAGKPKLGERLVKEMQAKEL 487
Query: 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP-TLESCTLLVEAYGQAGDPDQAR 417
+ SEE+Y+ALLR++AQ GD GA I++ M P + E+ +L VEAYG+AG D+A+
Sbjct: 488 KASEEVYMALLRAYAQMGDANGAAGISSSMLYASNDPLSFEAYSLFVEAYGKAGQVDKAK 547
Query: 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477
SNFD M +LGHKPDD+C A+++ AY +N LDKAL LLL+LEKDG E G TYTVLVDW+
Sbjct: 548 SNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKDGIEIGVITYTVLVDWM 607
Query: 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
L LI EAEQLL KIS+LGEAPPF++QVSLC MY+ EKK LQALG LEAK++QMGP
Sbjct: 608 ANLGLIEEAEQLLVKISQLGEAPPFELQVSLCCMYSSVRNEKKTLQALGVLEAKRDQMGP 667
Query: 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
++F+++I L GGF +DA+R++ MEA+ F S+RL++ +++
Sbjct: 668 NEFDKVITALKKGGFEKDARRMYKYMEARKFLPSQRLQMDMVA 710
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357142830|ref|XP_003572708.1| PREDICTED: uncharacterized protein LOC100834819 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 275/548 (50%), Positives = 377/548 (68%), Gaps = 14/548 (2%)
Query: 32 DFSEDLWRTVWEVSNLVLEDMEKARKKEKMKGFLQSDKVKEMSRFAGEIGIRGDMLRELR 91
D SEDLW TVWEVS V + M + + + ++ +L SD VKEM+RFA ++GIRG MLRELR
Sbjct: 228 DLSEDLWATVWEVSASVRDAMRRDQVRADLRNYLHSDDVKEMTRFAADVGIRGSMLRELR 287
Query: 92 FKWAREEMEESEFYEGLERLRKEANAQEMGEKAEGKAAAECAEVEEKPKVITLPKRHGKI 151
FKWARE++EE EFY GL+ +R +A+A P++ TLP+R G++
Sbjct: 288 FKWAREKLEEVEFYRGLDAMRSQADAAAG------------PAALPPPRLTTLPQRKGEV 335
Query: 152 KYKIYGLDLSDPKWTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPL 210
K+KI GLD+SDPKW EVAE+ E +PEE K + GK K +++L++E ++ DP+P
Sbjct: 336 KFKIGGLDMSDPKWAEVAERAAEAEAHFVPEEAKAVDGKAKKAEEQLLAVEPRKGDPAPA 395
Query: 211 LAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270
+ EWKE L+P R DW+ LL+R++ +N +LY KVAE++L+EE+F +RDYSKLID H+K
Sbjct: 396 MEEWKEELRPKRADWMALLERVKARNVELYLKVAEILLAEETFDVTIRDYSKLIDLHSKA 455
Query: 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330
N +EDAERIL KM E GI PDI+TS LVHMYSKAGNL++AKE+F ++ G QPD K++
Sbjct: 456 NHVEDAERILGKMREKGIAPDIITSITLVHMYSKAGNLEQAKESFAFIQKEGLQPDMKLF 515
Query: 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390
SMI AY+NAG+PK LV M I+ + EIY+ ++R++A G V GA ++ N M
Sbjct: 516 TSMINAYINAGEPKQAEDLVKQMENLSIKPTREIYMDVMRAYADRGLVDGADRMRNTMTF 575
Query: 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450
+PTLE TLLVEAYG+ GDPD A + F+ M GHKPDDRC A MI+ + +KN LD+
Sbjct: 576 AGVEPTLECFTLLVEAYGRIGDPDHAYALFEVMRSNGHKPDDRCLAGMISGHMRKNQLDQ 635
Query: 451 ALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510
AL LLL LEK+G +PG T VL+DWL L L+ EAEQL+ KI + GE P +I V L D
Sbjct: 636 ALKLLLSLEKEGLKPGVKTNLVLLDWLSTLHLVQEAEQLVQKIRKAGEE-PIEIHVYLAD 694
Query: 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570
MYA++ E+KA ++L LE KK + + FER+I+GLL GGF ++A + +M+++GF
Sbjct: 695 MYAKSRQEEKARKSLKILEEKKRLLKAEHFERVISGLLEGGFSEEANKYFKMMKSRGFVP 754
Query: 571 SERLKVAL 578
SE ++V +
Sbjct: 755 SETIEVGV 762
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 592 | ||||||
| TAIR|locus:2016402 | 316 | NFD5 "NUCLEAR FUSION DEFECTIVE | 0.503 | 0.943 | 0.525 | 1.4e-80 | |
| TAIR|locus:2025442 | 409 | AT1G01970 "AT1G01970" [Arabido | 0.567 | 0.821 | 0.329 | 5.4e-47 | |
| TAIR|locus:2027166 | 862 | PTAC2 "plastid transcriptional | 0.572 | 0.393 | 0.250 | 3.9e-22 | |
| TAIR|locus:2024367 | 607 | AT1G09680 "AT1G09680" [Arabido | 0.520 | 0.507 | 0.263 | 8.5e-21 | |
| TAIR|locus:2044430 | 822 | AT2G18940 [Arabidopsis thalian | 0.589 | 0.424 | 0.232 | 2.6e-18 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.530 | 0.383 | 0.219 | 2e-17 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.560 | 0.629 | 0.245 | 3.7e-17 | |
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.545 | 0.455 | 0.224 | 4.2e-17 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.476 | 0.308 | 0.250 | 1.4e-16 | |
| TAIR|locus:2060226 | 624 | AT2G32630 "AT2G32630" [Arabido | 0.538 | 0.511 | 0.235 | 2e-16 |
| TAIR|locus:2016402 NFD5 "NUCLEAR FUSION DEFECTIVE 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 157/299 (52%), Positives = 217/299 (72%)
Query: 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342
M++NGI PDI+T+T LVHMYSK+GN +RA EAFE+L+S+G +PD+K+Y +MI+ YVNAG+
Sbjct: 1 MSQNGIFPDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGK 60
Query: 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP-TLESCT 401
PKLG L+ M ++ SEE+Y+ALLR++AQ GD GA I++ M+ P + E+ +
Sbjct: 61 PKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYS 120
Query: 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGXXXXXXXXXXXXXXXXXX 461
L VEAYG+AG D+A+SNFD M +LGHKPDD+C A+++ AY
Sbjct: 121 LFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKD 180
Query: 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521
G E G TYTVLVDW+ L LI EAEQLL KIS+LGEAPPF++QVSLC MY+ EKK
Sbjct: 181 GIEIGVITYTVLVDWMANLGLIEEAEQLLVKISQLGEAPPFELQVSLCCMYSGVRNEKKT 240
Query: 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALIS 580
LQALG LEAK++QMGP++F+++I+ L GGF +DA+R++ MEA+ F S+RL++ +++
Sbjct: 241 LQALGVLEAKRDQMGPNEFDKVISALKRGGFEKDARRMYKYMEARKFLPSQRLQMDMVA 299
|
|
| TAIR|locus:2025442 AT1G01970 "AT1G01970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 111/337 (32%), Positives = 169/337 (50%)
Query: 165 WTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLEKEEDP-SPLLAEWKELLQPSRI 223
W +V + E + + P ++ +C+ + +I+ E+ LL W + P R
Sbjct: 72 WADVGLNLTEEQDEAITRIPIKMSKRCQALMRQIICFSPEKGSFCDLLGAWLRRMNPIRA 131
Query: 224 DWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKM 283
DW+++L L+ ++ Y KVAE L ++SF+ N RDY+K+I + K N +EDAER L M
Sbjct: 132 DWLSILKELKNLDSPFYIKVAEFSLLQDSFEANARDYTKIIHYYGKLNQVEDAERTLLSM 191
Query: 284 NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343
G + D VT T +V +YSKAG A+E F ++ G D + Y SMIMAY+ AG P
Sbjct: 192 KNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEIKLLGEPLDYRSYGSMIMAYIRAGVP 251
Query: 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403
+ G SL+ M + I E+Y ALLR ++ GD GA ++ + ++I P ++ C LL
Sbjct: 252 EKGESLLREMDSQEICAGREVYKALLRDYSMGGDAEGAKRVFDAVQIAGITPDVKLCGLL 311
Query: 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGXXXXXXXXXXXXXXXXXXGF 463
+ AY +G AR F+ M + G K D+C A ++AAY
Sbjct: 312 INAYSVSGQSQNARLAFENMRKAGIKATDKCVALVLAAYEKEEKLNEALGFLVELEKDSI 371
Query: 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
G VL W +L ++ E E LL + S P
Sbjct: 372 MLGKEASAVLAQWFKKLGVVEEVELLLREFSSSQSQP 408
|
|
| TAIR|locus:2027166 PTAC2 "plastid transcriptionally active 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 3.9e-22, P = 3.9e-22
Identities = 85/339 (25%), Positives = 138/339 (40%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
+ E Q ++ Y+ L+ A A ++AE + + MN+ GIVPD+ T + LV + K
Sbjct: 238 MRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRR 297
Query: 308 LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367
L++ + + S G PD YN ++ AY +G K M + M +G + Y
Sbjct: 298 LEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSV 357
Query: 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427
LL F Q G Q+ M+ P + +L+E +G+ G + + F M+
Sbjct: 358 LLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEEN 417
Query: 428 HKPDDRCTASMIAAYGXXXXXXXXXXXXXXXXXXGFEPGPATYTVLVDWLGRLQLINEAE 487
+PD +I A G P YT +++ G+ L EA
Sbjct: 418 IEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEAL 477
Query: 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547
+ E+G P + SL +AR G+ K++ L L D F I
Sbjct: 478 VAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAY 537
Query: 548 LAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFNR 586
GG ++A + + ME ER A++S +F R
Sbjct: 538 KQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFAR 576
|
|
| TAIR|locus:2024367 AT1G09680 "AT1G09680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 8.5e-21, P = 8.5e-21
Identities = 82/311 (26%), Positives = 141/311 (45%)
Query: 215 KELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCL 273
K LQP+ + + L++ + N F++ + + + +V YS LI+A KEN +
Sbjct: 268 KRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQ-MEKSRTRPDVFTYSALINALCKENKM 326
Query: 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333
+ A + +M + G++P+ V T L+H +S+ G +D KE+++ + S G QPD +YN++
Sbjct: 327 DGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTL 386
Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
+ + G ++VD MI G+ + Y L+ F + GDV A +I M
Sbjct: 387 VNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGI 446
Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGXXXXXXXXXX 453
+ + LV + G A M+R G KPDD M+ A+
Sbjct: 447 ELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFK 506
Query: 454 XXXXXXXXGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513
G P TY VL++ L +L + A+ LL + +G P +L + +
Sbjct: 507 LLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHH 566
Query: 514 R-AGIEKKALQ 523
R A K+ +Q
Sbjct: 567 RHANSSKRYIQ 577
|
|
| TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 254 (94.5 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 83/357 (23%), Positives = 151/357 (42%)
Query: 215 KELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274
K+ + P+ I + ++D + + + E N Y+ ++ K++
Sbjct: 379 KKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSN 438
Query: 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR-AKEAFESLRSHGFQPDKKVYNSM 333
+ ++L M NG P+ T ++ + G +D+ F ++S GF+PD+ +N++
Sbjct: 439 EMIKMLCDMKSNGCSPNRATWNTMLALCGNKG-MDKFVNRVFREMKSCGFEPDRDTFNTL 497
Query: 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393
I AY G + M +G Y ALL + A+ GD R + + M+ + F
Sbjct: 498 ISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGF 557
Query: 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK-PDDRCTASMIAAYGXXXXXXXXX 452
+PT S +L+++ Y + G+ + I+ G P +++ A
Sbjct: 558 KPTETSYSLMLQCYAKGGNY-LGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSE 616
Query: 453 XXXXXXXXXGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512
G++P + ++ R + ++AE +L I E G +P SL DMY
Sbjct: 617 RAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMY 676
Query: 513 ARAGIEKKALQALGFLEAKKEQMGPD--DFERIINGLLAGGFLQDAQRVHGLMEAQG 567
R G KA + L LE K Q+ PD + +I G G +Q+A R+ M +G
Sbjct: 677 VRRGECWKAEEILKTLE--KSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERG 731
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 246 (91.7 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 70/319 (21%), Positives = 133/319 (41%)
Query: 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN 307
L E+ F +V Y+ LI A A +A + KKM E+G P ++T V+++++ K G
Sbjct: 199 LQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGT 258
Query: 308 -LDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL 366
++ E ++S G PD YN++I + + + M +G + Y
Sbjct: 259 PWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYN 318
Query: 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426
ALL + + + A ++ N M + F P++ + L+ AY + G D+A + M
Sbjct: 319 ALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEK 378
Query: 427 GHKPDDRCTASMIAAYGXXXXXXXXXXXXXXXXXXGFEPGPATYTVLVDWLGRLQLINEA 486
G KPD ++++ + G +P T+ + G E
Sbjct: 379 GTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEM 438
Query: 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD--DFERII 544
++ +I+ G +P +L ++ + G++ + F E K+ P+ F +I
Sbjct: 439 MKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGV--FKEMKRAGFVPERETFNTLI 496
Query: 545 NGLLAGGFLQDAQRVHGLM 563
+ G + A V+ M
Sbjct: 497 SAYSRCGSFEQAMTVYRRM 515
|
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| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 83/338 (24%), Positives = 148/338 (43%)
Query: 227 NLLDRLREQNTQLYFKVAEL-VLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNE 285
NLL Q++Q Y + L + + F+ ++ ++ LI+ N +E+A ++ +M E
Sbjct: 111 NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVE 170
Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345
GI PD+V T ++ K G+++ A F+ + ++G +PD +Y S++ N+G+ +
Sbjct: 171 MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRD 230
Query: 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405
SL+ M I+ + AL+ +F + G A ++ N M P + + T L+
Sbjct: 231 ADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLIN 290
Query: 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGXXXXXXXXXXXXXXXXXXGFEP 465
+ G D+AR F M G PD S+I + G
Sbjct: 291 GFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTG 350
Query: 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525
TYT L+ G++ N A+++ + G P + L G KKAL
Sbjct: 351 NTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIF 410
Query: 526 GFLEAKKEQMG--PD--DFERIINGLLAGGFLQDAQRV 559
++ K+E G P+ + +++GL G L+ A V
Sbjct: 411 EDMQ-KREMDGVAPNIWTYNVLLHGLCYNGKLEKALMV 447
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| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 242 (90.2 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 74/329 (22%), Positives = 141/329 (42%)
Query: 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG 322
+I A A +AE + +++ ++GI P L+ Y K G L A+ + G
Sbjct: 310 IISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRG 369
Query: 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
PD+ Y+ +I AYVNAG+ + ++ M ++ + ++ LL F G+ +
Sbjct: 370 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTF 429
Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
Q+ M+ +P + ++++ +G+ D A + FD M+ G +PD ++I +
Sbjct: 430 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 489
Query: 443 GXXXXXXXXXXXXXXXXXXGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF 502
G P TY ++++ G + ++ ++LLGK+ G P
Sbjct: 490 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 549
Query: 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD--FERIINGLLAGGFLQDAQRVH 560
+L D+Y ++G A++ L E K + P + +IN G + A
Sbjct: 550 VTHTTLVDVYGKSGRFNDAIECLE--EMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAF 607
Query: 561 GLMEAQGFAASERLKVALISSQTFNRQRQ 589
+M + G S +LI++ F R+
Sbjct: 608 RVMTSDGLKPSLLALNSLINA--FGEDRR 634
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| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 71/283 (25%), Positives = 119/283 (42%)
Query: 218 LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277
L P+ + L+ + N V +L E +V Y+ LID + + A
Sbjct: 424 LSPNTRTYNELIKGYCKSNVHKAMGVLNKML-ERKVLPDVVTYNSLIDGQCRSGNFDSAY 482
Query: 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337
R+L MN+ G+VPD T T ++ K+ ++ A + F+SL G P+ +Y ++I Y
Sbjct: 483 RLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGY 542
Query: 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397
AG+ +++ M++ + + AL+ G ++ A + M QPT+
Sbjct: 543 CKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTV 602
Query: 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGXXXXXXXXXXXXXX 457
+ T+L+ + GD D A S F M+ G KPD + I Y
Sbjct: 603 STDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAK 662
Query: 458 XXXXGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500
G P TY+ L+ G L N A +L ++ + G P
Sbjct: 663 MRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEP 705
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| TAIR|locus:2060226 AT2G32630 "AT2G32630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 76/323 (23%), Positives = 139/323 (43%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
Y+ +I+A+ K+ E +LK M ++G+V + VT T+L+ + K G + A++ F+ +R
Sbjct: 262 YNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMR 321
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G + D VY S+I G K L D + G+ S Y AL+ + G++
Sbjct: 322 ERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMG 381
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
A + N M+ + T L++ Y + G D+A +D M + G + D ++
Sbjct: 382 AAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIA 441
Query: 440 AAYGXXXXXXXXXXXXXXXXXXGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499
+ + G + +YT L+D + + EA++L ++S G
Sbjct: 442 SCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQ 501
Query: 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE--RIINGLLAGGFLQDAQ 557
P + Y + G K+A + +EA M PD + +I+G + +A
Sbjct: 502 PNAITYNVMIYAYCKQGKIKEARKLRANMEANG--MDPDSYTYTSLIHGECIADNVDEAM 559
Query: 558 RVHGLMEAQGFAASERLKVALIS 580
R+ M +G + +IS
Sbjct: 560 RLFSEMGLKGLDQNSVTYTVMIS 582
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00014600001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (608 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 592 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 6e-17
Identities = 65/247 (26%), Positives = 118/247 (47%), Gaps = 10/247 (4%)
Query: 246 LVLSEES-FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
L L +E+ + + + Y+ LI AK ++ + +M G+ ++ T L+ ++
Sbjct: 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519
Query: 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS-LVDMMI-TSGIERSE 362
AG + +A A+ +RS +PD+ V+N++I A +G L +M T I+
Sbjct: 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579
Query: 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422
AL+++ A G V A ++ ++ + T E T+ V + Q GD D A S +D
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639
Query: 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV-------D 475
M + G KPD+ ++++ G LDKA +L + K G + G +Y+ L+ +
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 476 WLGRLQL 482
W L+L
Sbjct: 700 WKKALEL 706
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 2e-14
Identities = 73/338 (21%), Positives = 136/338 (40%), Gaps = 31/338 (9%)
Query: 184 PKPITGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKV 243
P+PI + D L + L S+I+ + R RE ++
Sbjct: 63 PEPIRIEVSESKDARLDDTQIRKSGVSLC--------SQIEKLVACGRHREA-----LEL 109
Query: 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303
E++ + F Y L++A + + + + +G PD ++ M+
Sbjct: 110 FEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169
Query: 304 KAGNLDRAKEAFESLRSHGFQPDKKV--YNSMIMAYVNAGQPKLGMSLVDMMITSGIERS 361
K G L A+ F+ + P++ + + ++I V+AG + +L M G +
Sbjct: 170 KCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223
Query: 362 EEIYLALLRSFAQCGDVRGAGQI-TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420
++ +LR+ A G R Q+ +++ T SC L+ + Y + GD + AR F
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI-DMYSKCGDIEDARCVF 282
Query: 421 DYMIRLGHKPDDRCTA--SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478
D M P+ A SM+A Y ++AL L E+ G T+++++
Sbjct: 283 DGM------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516
RL L+ A+Q + G +L D+Y++ G
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 6e-10
Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKV--YNSMIMAYVNAGQPK 344
G+V D S L+ MYSK G+++ A+ F+ + P+K +NSM+ Y G +
Sbjct: 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGM------PEKTTVAWNSMLAGYALHGYSE 307
Query: 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
+ L M SG+ + + ++R F++ + A Q + F + + T LV
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367
Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
+ Y + G + AR+ FD R+ K A +IA YG KA+ + + +G
Sbjct: 368 DLYSKWGRMEDARNVFD---RMPRKNLISWNA-LIAGYGNHGRGTKAVEMFERMIAEGVA 423
Query: 465 PGPATY 470
P T+
Sbjct: 424 PNHVTF 429
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 41/215 (19%), Positives = 97/215 (45%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
L+ A A ++ A+ + + ++E I T+ V+ S+ G+ D A ++ ++
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G +PD+ +++++ +AG ++ GI+ Y +L+ + + + +
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439
A ++ ++ + +PT+ + L+ A + +A M RLG P+ + ++
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
Query: 440 AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
A +K+ D L+LL + ++DG +P +
Sbjct: 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 57/260 (21%), Positives = 113/260 (43%), Gaps = 4/260 (1%)
Query: 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325
A +++ ++ A R+L+ + E G+ D T L+ +K+G +D E F + + G +
Sbjct: 448 ASSQD--IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA 505
Query: 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT 385
+ + ++I AGQ +M + ++ ++ AL+ + Q G V A +
Sbjct: 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVL 565
Query: 386 NIMRIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443
M+ E P + L++A AG D+A+ + + K + +
Sbjct: 566 AEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503
+K D AL++ +++K G +P ++ LVD G +++A ++L + G
Sbjct: 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685
Query: 504 IQVSLCDMYARAGIEKKALQ 523
SL + A KKAL+
Sbjct: 686 SYSSLMGACSNAKNWKKALE 705
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 2e-09
Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
++K A K+ +++A R K + P + T +L+ + + + ++D A ++
Sbjct: 409 HAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQ 464
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
G + D K+Y ++I +G+ + M+ +G+E + + AL+ A+ G V
Sbjct: 465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-----KPDDRC 434
A IMR + +P L+ A GQ+G D+A FD + + PD
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLAEMKAETHPIDPDHIT 581
Query: 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474
+++ A +D+A + + + + P YT+ V
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304
Y+ LID + K+ +E+A ++ +M + GI P++ T ++L+ K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 5e-08
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339
PD+VT L+ Y K G ++ A + F ++ G +P+ Y+ +I
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 9e-08
Identities = 68/315 (21%), Positives = 114/315 (36%), Gaps = 51/315 (16%)
Query: 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF 315
++ ++ L+ +AK ++A + +M G+ PD+ T ++ +L R +E
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 316 ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD-----------MMITSGIERSE-- 362
+ GF+ D V N++I YV G + D MI+ E E
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECL 270
Query: 363 ---EIYLALLRSFAQ---------------CGDVRGAGQITNIMRIEEFQPTLESCTLLV 404
E++ + GD R ++ + F + C L+
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330
Query: 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE 464
+ Y G +A F M D +MI+ Y K L DKAL +E+D
Sbjct: 331 QMYLSLGSWGEAEKVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386
Query: 465 PGPATYTVLVD---WLGRLQLINEAEQLLG-KISELGEAPPFKIQV----SLCDMYARAG 516
P T ++ LG L +G K+ EL E V +L +MY++
Sbjct: 387 PDEITIASVLSACACLGDLD--------VGVKLHELAERKGLISYVVVANALIEMYSKCK 438
Query: 517 IEKKALQALGFLEAK 531
KAL+ + K
Sbjct: 439 CIDKALEVFHNIPEK 453
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 4e-06
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479
++I Y KK +++AL L E++K G +P TY++L+D L +
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 60/292 (20%), Positives = 106/292 (36%), Gaps = 52/292 (17%)
Query: 263 LIDAHAKENCLEDAERILKKMNENGIVP--DIVTSTVLVHMYSKAGNLDRAKEA---FES 317
LI+ ++K C++ A + + E ++ I+ L + R EA F
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNN---------RCFEALIFFRQ 480
Query: 318 LRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377
+ +P+ + + A G G + ++ +GI + ALL + +CG
Sbjct: 481 MLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437
+ A N + + S +L+ Y G A F+ M+ G PD+ S
Sbjct: 540 MNYAWNQFNSHEKD-----VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594
Query: 438 MIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS-- 494
++ A + ++ + L +E+ P Y +VD LGR + EA + K+
Sbjct: 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT 654
Query: 495 -------------------ELGEAPPFKI----------QVSLCDMYARAGI 517
ELGE I + LC++YA AG
Sbjct: 655 PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 64/289 (22%), Positives = 121/289 (41%), Gaps = 29/289 (10%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319
++ ++ +A E+A + +M ++G+ D T ++++ ++S+ L+ AK+A L
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379
GF D +++ Y G+ + ++ D M + + AL+ + G
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIAGYGNHGRGT 408
Query: 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASM 438
A ++ M E P + ++ A +G +Q F M KP A M
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468
Query: 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD--------WLGRLQLINEAEQLL 490
I G++ LLD+A + + + F+P + L+ LGRL AE+L
Sbjct: 469 IELLGREGLLDEAYAM---IRRAPFKPTVNMWAALLTACRIHKNLELGRLA----AEKLY 521
Query: 491 GKISELGEAPPFKIQ--VSLCDMYARAGIEKKALQALGFLEAKKEQMGP 537
G P K+ V L ++Y +G + +A + + L+ K M P
Sbjct: 522 G-------MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 56/286 (19%), Positives = 113/286 (39%), Gaps = 15/286 (5%)
Query: 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312
F+ +V + LI + K + A + +M D ++ ++ Y + G
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGL 273
Query: 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372
E F ++R PD S+I A G +LG + ++ +G + +L++ +
Sbjct: 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333
Query: 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432
G A ++ + M ++ S T ++ Y + G PD+A + M + PD+
Sbjct: 334 LSLGSWGEAEKVFSRMETKD----AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
Query: 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492
AS+++A LD + L E+ G L++ + + I++A ++
Sbjct: 390 ITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449
Query: 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538
I P K +S + A + + +AL F + P+
Sbjct: 450 I-------PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN 488
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDI 292
Y+ LID K +E+A + K+M E GI PD+
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 395 PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444
P + + L++ Y + G ++A F+ M + G KP+ + +I K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374
PD YN++I Y G+ + + L + M GI+ + Y L+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 286 NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316
G+ PD+VT L+ +AG +D A E +
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPD 326
L+ KAG ++ A E F+ ++ G +PD
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGI 358
YNS+I Y AG+ + + L M G+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 592 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.91 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.77 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.76 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.74 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.74 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.7 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.7 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.65 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.65 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.62 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.6 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.52 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.49 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.45 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.42 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.41 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.38 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.38 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.37 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.36 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.35 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.33 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.27 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.26 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.25 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.24 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.2 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.2 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.19 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.18 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.17 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.15 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.15 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.11 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.11 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.1 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.06 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.97 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.94 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.92 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.91 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.91 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.89 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.88 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.87 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.85 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.85 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.83 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.82 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.82 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.76 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.74 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.66 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.57 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.57 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.56 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.56 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.55 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.46 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.45 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.45 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.44 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.4 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.37 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.35 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.32 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.32 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.3 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.29 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.28 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.28 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.27 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.26 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.25 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.25 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.24 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.22 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.2 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.15 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.14 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.12 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.1 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.09 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.08 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.05 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.04 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.03 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.01 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.0 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.97 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.97 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.95 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.94 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.93 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.83 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.83 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.82 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.8 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.77 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 97.76 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.75 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.71 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.7 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.7 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.69 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.67 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.63 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.63 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.6 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.59 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.56 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.56 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.47 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.39 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.38 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.37 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.3 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.29 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.28 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.28 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.24 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.19 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.15 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.12 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.09 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.02 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.02 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.01 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.0 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.96 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.95 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.94 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.94 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.84 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.83 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.8 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.76 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.74 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.73 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.71 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.56 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.55 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.53 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.35 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.34 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.32 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.26 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.22 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.21 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.14 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.1 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.09 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.03 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.0 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.99 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.91 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.9 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.87 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.84 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.83 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.71 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.68 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.66 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.63 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.62 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.52 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.51 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.5 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.41 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.29 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.01 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.93 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.92 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.9 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.66 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.56 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.53 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.37 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.19 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.19 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.15 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.07 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.88 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.73 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 93.6 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.59 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.56 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.5 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.27 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.11 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.1 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.05 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.84 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.79 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.67 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.4 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.93 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.77 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.35 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.05 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.9 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.84 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.7 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.24 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.24 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.15 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.72 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.71 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.55 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.23 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 89.13 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.54 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.45 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.32 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 88.22 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 88.22 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 87.87 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 87.64 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.64 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.55 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 86.74 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.63 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 86.54 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.34 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 86.28 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 85.9 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.55 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.53 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 85.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.37 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.35 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 85.07 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 84.43 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 84.32 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 84.15 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 83.82 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 83.79 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 83.76 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 82.62 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 82.38 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 82.14 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-56 Score=506.69 Aligned_cols=412 Identities=19% Similarity=0.242 Sum_probs=386.0
Q ss_pred HHHHHhhcccccCCC-CCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHH-HhhCHHHHHHHHH
Q 007695 169 AEKIHERGEMILPEE-PKPITGKCKLITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAE 245 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~-~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~-~~~~~~~~~~~~~ 245 (592)
.|++.+|..+|..+. ...+.|+ ..++..++..+ +.|.+++|+.+|+.|..||..+|+.+|.+| ..++.+.+.+++.
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~-~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~ 461 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMD-KIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR 461 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 367889999983222 2444555 34455666666 899999999999999999999999999999 5566888888888
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 007695 246 LVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP 325 (592)
Q Consensus 246 ~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p 325 (592)
.+. +.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|+.|.+.|+.|
T Consensus 462 ~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 462 LVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 765 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMIT--SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 326 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
|..+|+.||.+|++.|++++|.++|.+|.. .|+.||..+|+++|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 999999999999999999999999999986 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
|.+|++.|++++|..+|++|...|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+++|.+|++.|++
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ 700 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNW 700 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|..||..+|+.++.+|++.|+.++|.++|++|
T Consensus 701 eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 701 KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHhhh
Q 007695 564 EAQGFAASERLKVALISSQ 582 (592)
Q Consensus 564 ~~~g~~pd~~~~~~l~~~~ 582 (592)
.+.|+.||..++..++..|
T Consensus 781 ~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 781 KEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHH
Confidence 9999999996666666543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=485.78 Aligned_cols=389 Identities=19% Similarity=0.261 Sum_probs=361.5
Q ss_pred chHHHHHHHHcccccCCchhHHHHHHhhcC-----CCHhhHHHHHHHHH-hhCHHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 007695 190 KCKLITDKILSLEKEEDPSPLLAEWKELLQ-----PSRIDWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKL 263 (592)
Q Consensus 190 ~~~~~~~~l~~~~~~g~~~~A~~~~~~~~~-----p~~~t~~~lL~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~y~~L 263 (592)
+...+...+..+.+.|++.+|+++|++|.+ ++..+++.++.++. .+....+..+++.+. .||..+|+.+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~L 443 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNML 443 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHH
Confidence 344455555556699999999999999954 45556667777774 455777777766553 3999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~ 343 (592)
|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI--EEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~--~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|.+|.. .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 6789999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 007695 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 501 (592)
.|.+.|+.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhh
Q 007695 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581 (592)
Q Consensus 502 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~~~ 581 (592)
..+|++||.+|++.|++++|.++|++|...+..|+..+|+.||.+|++.|++++|.++|++|...|+.||..++..++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999555555554
Q ss_pred hh
Q 007695 582 QT 583 (592)
Q Consensus 582 ~~ 583 (592)
+.
T Consensus 764 ~~ 765 (1060)
T PLN03218 764 SE 765 (1060)
T ss_pred HH
Confidence 44
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-52 Score=477.86 Aligned_cols=375 Identities=16% Similarity=0.199 Sum_probs=331.6
Q ss_pred HHHHHHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 007695 194 ITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271 (592)
Q Consensus 194 ~~~~l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g 271 (592)
+++.|+..| +.|++++|..+|++|..||.++||++|.++ ..+...++..++..|. ..|+.||..+|+.+|.+|++.|
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcC
Confidence 456667666 999999999999999999999999999999 5677888999998876 5689999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
+++.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||..+||++|.+|++.|++++|+++|+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYA 378 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 6899999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 007695 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd 431 (592)
+|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+|++||.+|++.|++++|.++|++|.. +|
T Consensus 379 ~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 454 (857)
T PLN03077 379 LMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KD 454 (857)
T ss_pred HHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999965 78
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007695 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511 (592)
Q Consensus 432 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~ 511 (592)
.++|+.+|.+|++.|+.++|+.+|++|.. ++.||..||++++.+|++.|.++.+.+++..+.+.|+.++..++++|+++
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 89999999999999999999999999975 58999999999999999999988888888888888887777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhh
Q 007695 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQT 583 (592)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~~~~~ 583 (592)
|+++|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..++..++.++.
T Consensus 534 y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred HHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 77777777777766665 34666677777777777777777777777777777777755555444443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=448.51 Aligned_cols=372 Identities=18% Similarity=0.250 Sum_probs=274.1
Q ss_pred CCCcchHHHHHHHHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 007695 186 PITGKCKLITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKL 263 (592)
Q Consensus 186 ~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~L 263 (592)
++.++ ...++.++..| +.|+++.|+++|++|.+||.++||+++.++ ..+..+.+..+++.+. +.|+.|+..+|+.+
T Consensus 153 g~~~~-~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~p~~~t~~~l 230 (697)
T PLN03081 153 GFEPD-QYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMW-EDGSDAEPRTFVVM 230 (697)
T ss_pred CCCcc-hHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH-HhCCCCChhhHHHH
Confidence 34444 34556666666 899999999999999999999999999988 5566888888888876 34677777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~ 343 (592)
+.+|++.|..+.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|+.|. .+|+.+||+||.+|++.|++
T Consensus 231 l~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~ 306 (697)
T PLN03081 231 LRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYS 306 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCH
Confidence 77777777777777777777777777777777777777777777777777777776 45777777777777777777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m 386 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCCH
Q 007695 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE-LGEAPPF 502 (592)
Q Consensus 424 ~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~ 502 (592)
.+ ||..+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|+.|+.
T Consensus 387 ~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 387 PR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred CC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 53 677777777777777777777777777777777777777777777777777777777777777764 4677777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 503 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
.+|+.++++|++.|++++|.++++.| +..|+..+|++|+.+|...|+.+.|..+++++. ++.|+.
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~ 527 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEK 527 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCC
Confidence 77777777777777777777776654 355666667777777777777777766666664 345543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=456.15 Aligned_cols=379 Identities=18% Similarity=0.220 Sum_probs=357.1
Q ss_pred HHHHHHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 007695 194 ITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271 (592)
Q Consensus 194 ~~~~l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g 271 (592)
+.+.++..| +.|+++.|+++|++|.+||.++||++|.++ ..+..+.+..++..+.. .|+.||..||+.+|.+|++.+
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCcc
Confidence 556777777 999999999999999999999999999999 56678999999998864 589999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
++..+.+++..|.+.|+.||..+||+||.+|++.|+++.|.++|++|. .||..+||+||.+|++.|++++|+++|.
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 6799999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 007695 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd 431 (592)
+|...|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|.. ||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999964 89
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007695 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511 (592)
Q Consensus 432 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~ 511 (592)
..+|+.+|.+|++.|++++|+.+|++|.+.|+.||..||++++.+|++.|+++.|.++++.+.+.|+.|+..+|++|+++
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHhhhhhcc
Q 007695 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVALISSQTFNR 586 (592)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~l~~~~~~~~ 586 (592)
|+++|++++|.++|++|.+ ++..+|+.+|.+|++.|+.++|+++|++|.. ++.||. ++...+-+|+..+.
T Consensus 434 y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhch
Confidence 9999999999999999954 4667899999999999999999999999986 699999 55555555554443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=440.90 Aligned_cols=396 Identities=16% Similarity=0.206 Sum_probs=352.9
Q ss_pred CCCCCCccHHHH------HHHHHhhcccccCC-CCCCCCcchHHHHHHHHc-ccccCCchhHHHHHHhh----cCCCHhh
Q 007695 157 GLDLSDPKWTEV------AEKIHERGEMILPE-EPKPITGKCKLITDKILS-LEKEEDPSPLLAEWKEL----LQPSRID 224 (592)
Q Consensus 157 ~~~~~~~~~~~~------~~~~~ea~~~f~~~-~~~~~~~~~~~~~~~l~~-~~~~g~~~~A~~~~~~~----~~p~~~t 224 (592)
++.++...++.+ .|++.+|..+|..+ .++.++ ++.++. +.+.|++++|+++|++| ..||..|
T Consensus 153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t------~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t 226 (697)
T PLN03081 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS------WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226 (697)
T ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeee------HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhh
Confidence 444444455555 45778888888322 123333 334554 55999999999999998 6799999
Q ss_pred HHHHHHHHHhh-CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007695 225 WINLLDRLREQ-NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303 (592)
Q Consensus 225 ~~~lL~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 303 (592)
|+++|.++... ......++.. ...+.|+.||..+||.||.+|++.|++++|.++|+.|.. +|..+||+||.+|+
T Consensus 227 ~~~ll~a~~~~~~~~~~~~l~~-~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~ 301 (697)
T PLN03081 227 FVVMLRASAGLGSARAGQQLHC-CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYA 301 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHH-HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHH
Confidence 99999999554 4444444444 445678999999999999999999999999999999964 69999999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383 (592)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~ 383 (592)
+.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++|+.+|++.|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC
Q 007695 384 ITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK-DG 462 (592)
Q Consensus 384 ~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~-~g 462 (592)
+|++|. .||..+||+||.+|++.|+.++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|
T Consensus 382 vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 999997 5899999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 463 FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542 (592)
Q Consensus 463 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 542 (592)
+.|+..+|++++++|++.|++++|.+++++| ++.|+..+|++|+.+|..+|+++.|..+++++.+.+ +.+..+|..
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~ 533 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVV 533 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHH
Confidence 9999999999999999999999999998865 578999999999999999999999999999987642 235678999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 007695 543 IINGLLAGGFLQDAQRVHGLMEAQGFAAS 571 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~~~g~~pd 571 (592)
|++.|++.|++++|.+++++|++.|++..
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999998644
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-20 Score=217.20 Aligned_cols=363 Identities=13% Similarity=0.069 Sum_probs=260.5
Q ss_pred HHHccc-ccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 007695 197 KILSLE-KEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN 271 (592)
Q Consensus 197 ~l~~~~-~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g 271 (592)
.+..++ ..|++++|...|+++. .| +..++..+...+ ..++.+.+...+....... +.+...+..++..+.+.|
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCC
Confidence 344444 6677777777776652 22 344444444444 4455666666666654432 345556667777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
++++|..+++.+.... +.+..+|..+..+|...|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|..+++
T Consensus 582 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 582 QLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLK 659 (899)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776642 3466777777788888888888888887777653 4456677777777778888888888887
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 007695 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD 431 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd 431 (592)
++.+.. +.+..++..+...+...|++++|..+++.+.... +.+...+..+...+.+.|++++|...|+.+...+ |+
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~ 735 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PS 735 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CC
Confidence 777653 3356777777888888888888888888777665 5566777777888888888888888888877754 34
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007695 432 DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511 (592)
Q Consensus 432 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~ 511 (592)
..++..+..++.+.|++++|...+..+.+.. +.+...+..+...|...|++++|...|+++.+.... +..+++.+...
T Consensus 736 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~ 813 (899)
T TIGR02917 736 SQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWL 813 (899)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4666677778888888888888888877653 456777788888888888888888888888876543 67788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 512 YARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
+...|+ .+|...++++.... +-++..+..+...+...|++++|.++|+++.+.+.. +.
T Consensus 814 ~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~ 871 (899)
T TIGR02917 814 YLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AA 871 (899)
T ss_pred HHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ch
Confidence 888888 77888888877652 335667778888888999999999999999887543 44
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-20 Score=218.81 Aligned_cols=381 Identities=13% Similarity=0.039 Sum_probs=318.5
Q ss_pred HHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHH
Q 007695 170 EKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVA 244 (592)
Q Consensus 170 ~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~ 244 (592)
|++.+|...| .......|........+..++ +.|+.++|+..|+++. .| +...+..+...+ ..++.+.+...+
T Consensus 513 g~~~~A~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRF--EKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHH--HHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 3455555555 111112233333445555556 8999999999999873 33 344555666665 567788888888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 007695 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQ 324 (592)
Q Consensus 245 ~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~ 324 (592)
+.+... .+.+...|..+...+.+.|++++|...|+.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+.. +
T Consensus 591 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 666 (899)
T TIGR02917 591 NEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-P 666 (899)
T ss_pred HHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 887653 35678889999999999999999999999998864 3367789999999999999999999999998764 5
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404 (592)
Q Consensus 325 pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li 404 (592)
.+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+.+.|++++|...|..+...+ |+..++..++
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~ 743 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLH 743 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHH
Confidence 568899999999999999999999999999875 4578889999999999999999999999999874 5557888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 405 EAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484 (592)
Q Consensus 405 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 484 (592)
.++.+.|++++|...++.+....+ .+...+..+...|...|++++|..+|+++.+.. +.+...+..+...+...|+ .
T Consensus 744 ~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 744 RALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-H
Confidence 999999999999999999998654 478888999999999999999999999998865 4678889999999999999 8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
+|...++++...... +..++..+...+...|++++|..+|+++.+.+.. ++.++..+..++.+.|+.++|.+++++|+
T Consensus 821 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 821 RALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 899999999886544 6678888999999999999999999999987543 88899999999999999999999999986
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-19 Score=186.29 Aligned_cols=303 Identities=15% Similarity=0.087 Sum_probs=251.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD---KKVYNSMIMAYVNA 340 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~li~a~~~~ 340 (592)
...+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4456788999999999999998742 3667899999999999999999999999987532221 35688899999999
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 007695 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT----LESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 341 g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~Li~~~~~~g~~~~A 416 (592)
|++++|..+|.++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998753 44788999999999999999999999999987653222 23456788889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 417 ~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
...|+++.+... .+...+..+...|.+.|++++|..+|+++.+.+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999987543 2456778888999999999999999999987542223467888999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCHH
Q 007695 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA---GGFLQDAQRVHGLMEAQGFAASER 573 (592)
Q Consensus 497 g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~---~g~~~~A~~l~~~m~~~g~~pd~~ 573 (592)
. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 4 55566788999999999999999999988775 5777788888877664 568999999999999998888874
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-18 Score=181.10 Aligned_cols=298 Identities=17% Similarity=0.158 Sum_probs=241.4
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD---IVTSTVLVHMYSKAGNLD 309 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~Li~~~~~~g~~~ 309 (592)
..++.+.+...+..++... +.+..++..+...+.+.|++++|..+++.+...+..++ ..++..+...|.+.|+++
T Consensus 47 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred hcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 4444555555555555431 34556788899999999999999999999987632222 356788899999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS----EEIYLALLRSFAQCGDVRGAGQIT 385 (592)
Q Consensus 310 ~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~Ll~~~~~~g~~~~A~~~~ 385 (592)
+|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+...+..++ ...+..+...+.+.|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999998753 55778999999999999999999999999988654332 224566778889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007695 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465 (592)
Q Consensus 386 ~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 465 (592)
+++.+.. +.+...+..+...|.+.|++++|..+|+++...+......+++.++.+|...|++++|...++.+.+. .|
T Consensus 204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 9998765 45577888899999999999999999999987544333567888999999999999999999998875 46
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 466 GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR---AGIEKKALQALGFLEAKKEQMGPD 538 (592)
Q Consensus 466 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 538 (592)
+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+..++..+++.+.+++..|+|.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7677788999999999999999999998875 5788888888887775 568999999999998877766665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-15 Score=167.53 Aligned_cols=330 Identities=10% Similarity=0.021 Sum_probs=256.0
Q ss_pred HHHHHHcccccCCchhHHHHHHhh----cCCCHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH
Q 007695 194 ITDKILSLEKEEDPSPLLAEWKEL----LQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK 269 (592)
Q Consensus 194 ~~~~l~~~~~~g~~~~A~~~~~~~----~~p~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~ 269 (592)
+...+....+.|++++|+.+++.. +.+....+...+..+..++.+.+...++...... +.+...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHH
Confidence 334444555899999999998776 2333333444444457788888999888887643 3456678888899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 007695 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 349 (592)
.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 999999999999998863 2357788889999999999999999999887653 2334444343 347889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHH
Q 007695 350 VDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ----ARSNFDYMIR 425 (592)
Q Consensus 350 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~----A~~lf~~m~~ 425 (592)
++.+......++...+..+..++.+.|++++|...++...... +.+...+..+...|...|++++ |...|++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998876544455566667788899999999999999998775 5568888889999999999985 7999999888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007695 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505 (592)
Q Consensus 426 ~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 505 (592)
..+. +...+..+...+...|++++|...+++..... +.+...+..+..++.+.|++++|...++.+...... +...+
T Consensus 279 l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~ 355 (656)
T PRK15174 279 FNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWN 355 (656)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHH
Confidence 5443 56788888999999999999999999988753 234566777888999999999999999998876433 33444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..+..++...|+.++|...|++..+..
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 556778889999999999999887753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-14 Score=160.90 Aligned_cols=357 Identities=12% Similarity=0.022 Sum_probs=271.4
Q ss_pred ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 203 KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l 279 (592)
+.|++++|+..|++. ..|+...|..+-.++ ..++.+.+...+...+... +.+...|..+..+|...|++++|..-
T Consensus 139 ~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 889999999999887 567777776666665 6677888888887776532 34566788888999999999999876
Q ss_pred HHHHHHCCCC----------------------------C-CHHHHHHH------------------------------HH
Q 007695 280 LKKMNENGIV----------------------------P-DIVTSTVL------------------------------VH 300 (592)
Q Consensus 280 ~~~m~~~g~~----------------------------p-d~~~~~~L------------------------------i~ 300 (592)
|......+.. | +...+..+ +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 6544322100 0 00000000 00
Q ss_pred HH------HHcCCHHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 301 MY------SKAGNLDRAKEAFESLRSHG-F-QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372 (592)
Q Consensus 301 ~~------~~~g~~~~A~~~~~~m~~~g-~-~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 372 (592)
.+ ...+++++|.+.|+.....+ . +.+...|+.+...+...|++++|+..|++.++.. +-+..+|..+...+
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~ 375 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 00 11257889999999998764 2 3345678888899999999999999999998753 22467888999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 452 (592)
...|++++|...|+...... +.+..+|..+...|...|++++|...|++.....+. +...+..+..++.+.|++++|+
T Consensus 376 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998775 556889999999999999999999999999886442 5667777888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF------KIQVSLCDMYARAGIEKKALQALG 526 (592)
Q Consensus 453 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~~~~~Li~~~~~~g~~~~A~~~~~ 526 (592)
..|++..+.. +-+...++.+...+...|++++|...|++........+. ..++.....+...|++++|..+++
T Consensus 454 ~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 454 ATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999987642 335788889999999999999999999998876432111 112222333445799999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 527 FLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 527 ~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+....+ +.+...+..+...+.+.|++++|++.|++..+.
T Consensus 533 kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 533 KALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 987763 334557888999999999999999999998765
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.6e-15 Score=163.23 Aligned_cols=326 Identities=12% Similarity=0.015 Sum_probs=262.8
Q ss_pred HHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 231 RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDR 310 (592)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~ 310 (592)
.+.++....+...+...+.... -+...+..++.++...|+++.|...|+++..... .+...+..+...+...|++++
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHH
Confidence 3466777788888887776543 3344556666777889999999999999998643 367788889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI 390 (592)
Q Consensus 311 A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~ 390 (592)
|...|++..+.. +.+...+..+..++...|++++|...++.+...... +...+..+ ..+.+.|++++|...++.+..
T Consensus 129 Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 129 VADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 999999998763 456778899999999999999999999988775433 33344333 348889999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCC
Q 007695 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK----ALNLLLELEKDGFEPG 466 (592)
Q Consensus 391 ~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~----A~~l~~~m~~~g~~p~ 466 (592)
..-.++...+..+...+.+.|++++|...|++.....+. +...+..+...|...|++++ |...|++..+.. +.+
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~ 283 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDN 283 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCC
Confidence 643344555566678899999999999999999986543 56777888899999999986 899999988743 335
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546 (592)
Q Consensus 467 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a 546 (592)
...+..+...+...|++++|...+++....... +...+..+..+|...|++++|...|+.+...+.. +...+..+..+
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~a 361 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAA 361 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHH
Confidence 678889999999999999999999999987654 6778888999999999999999999999875322 33344556778
Q ss_pred HHhCCCHHHHHHHHHHHHHC
Q 007695 547 LLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 547 ~~~~g~~~~A~~l~~~m~~~ 566 (592)
+...|+.++|+..|++..+.
T Consensus 362 l~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 362 LLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999998865
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-14 Score=172.25 Aligned_cols=387 Identities=13% Similarity=0.059 Sum_probs=231.6
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhhc--CCCH---hhHHHHHH------------
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKELL--QPSR---IDWINLLD------------ 230 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~--~p~~---~t~~~lL~------------ 230 (592)
.|+..+|+..| ......+|....+...+..++ +.|++++|+..|++.. .|+. ..|..++.
T Consensus 282 ~g~~~~A~~~l--~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 282 SGQGGKAIPEL--QQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 35667777777 222334444444555566555 8899999999998873 3432 22332221
Q ss_pred -HHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 231 -RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLD 309 (592)
Q Consensus 231 -~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~ 309 (592)
.+..++.+.+...++..+... +.+...+..+...+...|++++|.+.|+++.+... .+...+..+...|. .++.+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHH
Confidence 124567788888888877653 34566777888899999999999999999887532 23444544444442 23344
Q ss_pred HHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 007695 310 RAKEAFESLRSHGF--------QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381 (592)
Q Consensus 310 ~A~~~~~~m~~~g~--------~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A 381 (592)
+|..+++.+....- ......+..+...+...|++++|++.|++.++.... +...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 44444443321100 000112233334444455555555555555443211 334444455555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHH--------------------------------------------HHHHHHHHcCCHHHHH
Q 007695 382 GQITNIMRIEEFQPTLESCT--------------------------------------------LLVEAYGQAGDPDQAR 417 (592)
Q Consensus 382 ~~~~~~m~~~g~~~~~~~~~--------------------------------------------~Li~~~~~~g~~~~A~ 417 (592)
...++.+.... +.+...+. .+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 55555544332 22222222 2334455566666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
.+++. ...+...+..+...+.+.|++++|+..|+...+.. +.+...+..+...+...|++++|.+.++.+....
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 65551 12344455667777888888888888888887753 3356777888888888888888888888777653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCC
Q 007695 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ--M---GPDDFERIINGLLAGGFLQDAQRVHGLMEA-QGFAA 570 (592)
Q Consensus 498 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~--~---~~~~~~~li~a~~~~g~~~~A~~l~~~m~~-~g~~p 570 (592)
.. +..++..+..++...|++++|.++++.+...... + +...+..+...+...|+.++|++.|++... .|+.|
T Consensus 668 p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 668 ND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 33 5566777778888888888888888887764321 1 123455567778888888888888887753 34543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-15 Score=152.35 Aligned_cols=370 Identities=14% Similarity=0.072 Sum_probs=289.5
Q ss_pred CCcchHHHHHHHHccc-ccCCchhHHHHHHhh--cCCC-HhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHH-H
Q 007695 187 ITGKCKLITDKILSLE-KEEDPSPLLAEWKEL--LQPS-RIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRD-Y 260 (592)
Q Consensus 187 ~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~--~~p~-~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~-y 260 (592)
+.+.....+..+.+++ ..|++.+|+..++.+ .+|+ ...|.-+-.++ .+++.+.+.+.+...++ +.|+... .
T Consensus 111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~ 187 (966)
T KOG4626|consen 111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCAR 187 (966)
T ss_pred ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhh
Confidence 3444444556677777 689999999999988 4564 34466666666 56667777777666553 4565544 3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
+.+...+-..|++.+|..-|.+..+. .|. ...|+.|...+-.+|+.-.|++.|++..+.. +.-...|-.|...|..
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKE 264 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHH
Confidence 34444555678999999988888775 333 5568889999999999999999999988763 2336789999999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l 419 (592)
.+.++.|...|.+..... +-....|..+...|...|.++.|...|++..... +.-...|+.|..++-..|++.+|.+.
T Consensus 265 ~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHH
Confidence 999999999998887642 2246778888888999999999999999988764 33378999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007695 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGE 498 (592)
Q Consensus 420 f~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 498 (592)
+++....... ...+.+.+...|...|.+++|..+|....+ +.|. ...++.|...|-.+|++++|...|++..+ +
T Consensus 343 YnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I 417 (966)
T KOG4626|consen 343 YNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--I 417 (966)
T ss_pred HHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--c
Confidence 9998875432 456677799999999999999999988776 4454 46788899999999999999999999887 4
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 499 APP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 499 ~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
.|+ ...|+.+...|...|+++.|.+.+.+....+.. -.+.++.|...|...|+..+|++-|++.+. ++||.
T Consensus 418 ~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 418 KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 454 468899999999999999999999888765321 245788899999999999999999998875 57776
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-14 Score=166.35 Aligned_cols=357 Identities=14% Similarity=0.094 Sum_probs=246.0
Q ss_pred ccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHH------------HHHHHH
Q 007695 203 KEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDY------------SKLIDA 266 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y------------~~Li~~ 266 (592)
..|++++|+..|++.+ .| +...+..+-..+ ..++.+.+...++..+....-.++...+ ..+...
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 6778888888887763 34 344444444444 5566777777777766543222222111 122345
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHH
Q 007695 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A 346 (592)
+.+.|++++|...|+++.+... .+...+..+..++...|++++|.+.|++..+.. +.+...+..+...|. .++.++|
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHH
Confidence 6677888888888888777632 356667777788888888888888888877653 334556666666664 4567777
Q ss_pred HHHHHHHHHCCC--------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 347 MSLVDMMITSGI--------ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 347 ~~l~~~m~~~g~--------~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
..+++.+..... ......+..+...+...|++++|...|++..+.. +-+...+..+...|.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 777765432210 0012234556677888999999999999999875 5567888899999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------------------
Q 007695 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD------------------------------------- 461 (592)
Q Consensus 419 lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~------------------------------------- 461 (592)
.|+++....+. +...+..+...+...++.++|+..++.+...
T Consensus 517 ~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 99998875332 2222222222333444444444443332110
Q ss_pred --CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 462 --GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDD 539 (592)
Q Consensus 462 --g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 539 (592)
..+.+...+..+...+.+.|++++|...|+++...... +...+..++..|...|++++|.+.++.+... .+.++..
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~ 673 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNT 673 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHH
Confidence 12345566777888899999999999999999987554 7888999999999999999999999988765 2335667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 540 FERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 540 ~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+..+..++...|++++|.++|+++...
T Consensus 674 ~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 674 QRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 777888999999999999999998865
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-14 Score=148.97 Aligned_cols=362 Identities=14% Similarity=0.101 Sum_probs=286.8
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH--HhhCHHHHHHH
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL--REQNTQLYFKV 243 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~--~~~~~~~~~~~ 243 (592)
.|++++|.... .......|+.-..+.-+...+ ..|+.+.|...|.+. ..|+.+...+-+.-+ +.|..+++...
T Consensus 129 rg~~~~al~~y--~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALY--RAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHH--HHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 46677777665 212233333333344455555 899999999999887 567767766666655 44556666555
Q ss_pred HHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 244 AELVLSEESFQTN-VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 244 ~~~~~~~~~~~p~-~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
..+.+. ..|. ...|+.|...+-..|++..|++.|++..+. +|+ ...|-.|.+.|...+.++.|...|.+....
T Consensus 207 YlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 207 YLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHh---hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 544432 2343 345889999999999999999999999885 554 567889999999999999999999988865
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS-EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400 (592)
Q Consensus 322 g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 400 (592)
. +.....|..|...|-..|..+.|+..|++.++.. |+ ...|+.|..++-..|++.+|...|+...... +....+.
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 3 4457788899999999999999999999999853 44 7899999999999999999999999998764 4457889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRLGHKPD-DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLG 478 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~ 478 (592)
+.|...|...|.++.|..+|....+- .|. ...++.+...|-+.|++++|+..|++..+ +.|+ ...|+.+-..|-
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 99999999999999999999998874 343 45788899999999999999999999877 6787 478999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547 (592)
Q Consensus 479 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~ 547 (592)
..|+.+.|.+.+.+.+..+.. -...++.|...|...|++.+|+.-+++...... -.++.|-.++.++
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP-DfpdA~cNllh~l 500 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP-DFPDAYCNLLHCL 500 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC-CCchhhhHHHHHH
Confidence 999999999999999875433 357889999999999999999999999887532 2355665565554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-12 Score=148.93 Aligned_cols=394 Identities=11% Similarity=0.014 Sum_probs=285.4
Q ss_pred HHHH---HHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhh--cCCCH-hhHHHHHHHH-HhhC
Q 007695 165 WTEV---AEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKEL--LQPSR-IDWINLLDRL-REQN 236 (592)
Q Consensus 165 ~~~~---~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~--~~p~~-~t~~~lL~~~-~~~~ 236 (592)
|..+ .|+..+|+.++. ......+........+..++ +.|++++|+..|++. ..|+. ..+..+...+ ..++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~--~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYN--RYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 7666 467788887772 22223344444455566666 899999999999986 44553 3344444444 6678
Q ss_pred HHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 237 TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFE 316 (592)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~ 316 (592)
...+...++..+... +.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...+..+.|+..++
T Consensus 99 ~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 99 YDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 888999888887653 44555 888888999999999999999999987433 56666778888888999999999998
Q ss_pred HHHhCCCCCCH------HHHHHHHHHHH-----HcCCc---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhCC
Q 007695 317 SLRSHGFQPDK------KVYNSMIMAYV-----NAGQP---KLGMSLVDMMITS-GIERSEE-IY----LALLRSFAQCG 376 (592)
Q Consensus 317 ~m~~~g~~pd~------~t~~~li~a~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~----~~Ll~~~~~~g 376 (592)
.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 7664 2331 12222333222 12233 6788888888864 2223221 11 11134556779
Q ss_pred CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 007695 377 DVRGAGQITNIMRIEEFQ-PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP---DDRCTASMIAAYGKKNLLDKAL 452 (592)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~-~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p---d~~t~~~li~a~~~~g~~~~A~ 452 (592)
++++|...|+.+...+-+ |+ ..-..+...|...|++++|...|+++....... ....+..+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987622 32 222335778999999999999999988753221 1345666777889999999999
Q ss_pred HHHHHHHHCC-----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 453 NLLLELEKDG-----------FEPG---PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518 (592)
Q Consensus 453 ~l~~~m~~~g-----------~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~ 518 (592)
.+++.+.... -.|+ ...+..+...+...|++++|...++++...... +...+..+...+...|++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 9999987642 1233 234566778889999999999999999887555 788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 519 ~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
++|.+.+++..... +-++..+..+...+...|++++|..+++++++. .|+.
T Consensus 410 ~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~ 460 (765)
T PRK10049 410 RAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQD 460 (765)
T ss_pred HHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCC
Confidence 99999999998863 345677777888999999999999999999975 6776
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-12 Score=145.28 Aligned_cols=330 Identities=9% Similarity=-0.080 Sum_probs=252.3
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 312 (592)
..++.+.+...+...+. ..|+...|..+..+|.+.|++++|+..++...+... .+...|..+..+|...|++++|.
T Consensus 139 ~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 56778888888887764 467888899999999999999999999999998642 26778899999999999999998
Q ss_pred HHHHHHHhCCC----------------------------C-C---CHHHHHHH---------------------------
Q 007695 313 EAFESLRSHGF----------------------------Q-P---DKKVYNSM--------------------------- 333 (592)
Q Consensus 313 ~~~~~m~~~g~----------------------------~-p---d~~t~~~l--------------------------- 333 (592)
..|......+- . + ........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 76654432110 0 0 00000000
Q ss_pred HHHH------HHcCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 334 IMAY------VNAGQPKLGMSLVDMMITSG-IER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405 (592)
Q Consensus 334 i~a~------~~~g~~~~A~~l~~~m~~~g-~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~ 405 (592)
+..+ ...+++++|.+.|+...+.+ ..| +...+..+...+...|++++|...++...... +.+...|..+..
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~ 373 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 0000 11256888999999998764 233 45678888888999999999999999998764 445778999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485 (592)
Q Consensus 406 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 485 (592)
.+...|++++|...|++.....+ .+...|..+...|...|++++|...|++..+.. +.+...+..+..++.+.|++++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988643 257788889999999999999999999988753 3356777788889999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhCCCHHHHHHH
Q 007695 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD------DFERIINGLLAGGFLQDAQRV 559 (592)
Q Consensus 486 A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~~~li~a~~~~g~~~~A~~l 559 (592)
|...+++..+.... +...++.+...+...|++++|...|++........+.. .++..+..+...|++++|.++
T Consensus 452 A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 452 SMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999876433 67889999999999999999999999987753321111 122222334457999999999
Q ss_pred HHHHHHCCCCCCH
Q 007695 560 HGLMEAQGFAASE 572 (592)
Q Consensus 560 ~~~m~~~g~~pd~ 572 (592)
+++.... .|+.
T Consensus 531 ~~kAl~l--~p~~ 541 (615)
T TIGR00990 531 CEKALII--DPEC 541 (615)
T ss_pred HHHHHhc--CCCc
Confidence 9998775 4555
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-12 Score=126.24 Aligned_cols=347 Identities=13% Similarity=0.153 Sum_probs=245.5
Q ss_pred hcCCCHhhHHHHHHHHHh-hCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007695 217 LLQPSRIDWINLLDRLRE-QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTS 295 (592)
Q Consensus 217 ~~~p~~~t~~~lL~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~ 295 (592)
....+..|+.++|.+++. ...+.+..++++.-.. ..+.+..+||.+|.+-.- ....++..+|....+.||..|+
T Consensus 202 ~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 202 TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhH
Confidence 344466788999998854 3455555555554333 347788899999876543 2337888999999999999999
Q ss_pred HHHHHHHHHcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH-HHHHHHHHHH----CCCCC----CH
Q 007695 296 TVLVHMYSKAGNLDR----AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL-GMSLVDMMIT----SGIER----SE 362 (592)
Q Consensus 296 ~~Li~~~~~~g~~~~----A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~-A~~l~~~m~~----~g~~p----~~ 362 (592)
|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.+++.+ +..++.+... ..++| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998875 45677888999999999999999999999888855 3344444332 22222 45
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEE----FQPT---LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT 435 (592)
Q Consensus 363 ~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~ 435 (592)
..|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|.-+-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 567788899999999999998887765431 2333 234566777888888999999999999887777888899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CH--------H-----HHHHHHH-------HHH
Q 007695 436 ASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ-LI--------N-----EAEQLLG-------KIS 494 (592)
Q Consensus 436 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~--------~-----~A~~l~~-------~m~ 494 (592)
..++.+..-.|.++-.-+++..++..|..-+.....-++..+++.+ +. . -|..+++ ++.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999988899988888775555544444444555443 11 0 0111111 122
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHH---HHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 007695 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMGPDDFE---RIINGLLAGGFLQDAQRVHGLMEAQGFAA 570 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~---~li~a~~~~g~~~~A~~l~~~m~~~g~~p 570 (592)
...-+....+...-.+.+.|..++|.++|..+..++. .|.....| -++..-.+......|+.+++-|...++..
T Consensus 517 --~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 517 --AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred --hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 2334566778888888999999999999998865433 23222344 45556667788889999998887655443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-12 Score=143.39 Aligned_cols=391 Identities=13% Similarity=0.081 Sum_probs=255.9
Q ss_pred HHHHhhcccccCCCCCCCCcchH-HHHHHHHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHH--H--HhhCHHHHHHH
Q 007695 170 EKIHERGEMILPEEPKPITGKCK-LITDKILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDR--L--REQNTQLYFKV 243 (592)
Q Consensus 170 ~~~~ea~~~f~~~~~~~~~~~~~-~~~~~l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~--~--~~~~~~~~~~~ 243 (592)
|+..+|...| ......+|+.. .+. .++.++ ..|+.++|+..+++...|+...+..++.. + ..++...+..+
T Consensus 48 Gd~~~Al~~L--~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 48 GDTAPVLDYL--QEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred CCHHHHHHHH--HHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555666666 22222333331 122 444444 67888888888888877766666666632 2 34677788888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007695 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323 (592)
Q Consensus 244 ~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (592)
++.++... +.++..+..++..+.+.++.++|++.++++... .|+...+..++..+...++..+|++.++++.+..
T Consensus 125 y~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~- 199 (822)
T PRK14574 125 WQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA- 199 (822)
T ss_pred HHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-
Confidence 88877654 334555667777888888888888888888775 4555555445445544566656888888887763
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHH------------------------------------------------HHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVD------------------------------------------------MMIT 355 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~------------------------------------------------~m~~ 355 (592)
+-+...+..+..++.+.|-...|.++.. .+..
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 3355566666666665554444333332 2222
Q ss_pred C-CCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 007695 356 S-GIERSE-----EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG-- 427 (592)
Q Consensus 356 ~-g~~p~~-----~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g-- 427 (592)
. +-.|.. .+..-.+-++...+++.++.+.|+.+...+.+....+-.++..+|...+++++|..+|..+....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 0 111211 11223345567778888888888888877765555677788888888888888888888886642
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHHcCCHHHHHHHH
Q 007695 428 ---HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGF-----------EPGP---ATYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 428 ---~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-----------~p~~---~ty~~li~~~~~~g~~~~A~~l~ 490 (592)
..++......|.-+|...+++++|..+++.+.+... .||. ..+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122333356778888888888888888888876311 1232 33445666778888888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 007695 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570 (592)
Q Consensus 491 ~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 570 (592)
+.+....+. |..+...+.+.+...|.+..|...++..... .+-+..+....+.++...|++++|..+.+...+. .|
T Consensus 440 e~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~P 515 (822)
T PRK14574 440 EDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR--SP 515 (822)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CC
Confidence 888776555 7888888888888888888888888766655 3345566667777788888888888888777654 44
Q ss_pred CH
Q 007695 571 SE 572 (592)
Q Consensus 571 d~ 572 (592)
+.
T Consensus 516 e~ 517 (822)
T PRK14574 516 ED 517 (822)
T ss_pred Cc
Confidence 44
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-12 Score=123.44 Aligned_cols=311 Identities=16% Similarity=0.116 Sum_probs=240.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007695 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332 (592)
Q Consensus 253 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 332 (592)
.+.+..+|.++|.+.|+-...+.|..+|++......+.+..+||.+|.+-+-..+ .++..+|....+.||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 3567789999999999999999999999999888888899999999976654433 789999999999999999999
Q ss_pred HHHHHHHcCCchH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHH----cCC----CCCHHH
Q 007695 333 MIMAYVNAGQPKL----GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG-AGQITNIMRI----EEF----QPTLES 399 (592)
Q Consensus 333 li~a~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~-A~~~~~~m~~----~g~----~~~~~~ 399 (592)
++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++-++..+ +..++.++.. +.+ +.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998875 56788999999999999999999999999888654 4444444443 222 224566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLG----HKPD---DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTV 472 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g----~~pd---~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 472 (592)
|..-+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....|+....+.-..+|+.|.-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7778888889999999988877665421 2222 23456677888899999999999999998878899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-C--------HHH-----HHHHH-------HHHHHc
Q 007695 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG-I--------EKK-----ALQAL-------GFLEAK 531 (592)
Q Consensus 473 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g-~--------~~~-----A~~~~-------~~m~~~ 531 (592)
++++....+.++-..+++..+...|..-+.....-+...+++.. . +.. |..++ .+++.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~- 517 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA- 517 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh-
Confidence 99999999999999999999988876555555554555554433 1 111 11122 12332
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 007695 532 KEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFA 569 (592)
Q Consensus 532 ~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~ 569 (592)
...++...+.....+.+.|..++|.+++..+.+.|-+
T Consensus 518 -~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 518 -QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred -ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 3445667888888999999999999999999766544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-11 Score=135.59 Aligned_cols=367 Identities=15% Similarity=0.054 Sum_probs=267.3
Q ss_pred HHHHcccccCCchhHHHHHHhhc--CCCH--hhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc
Q 007695 196 DKILSLEKEEDPSPLLAEWKELL--QPSR--IDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270 (592)
Q Consensus 196 ~~l~~~~~~g~~~~A~~~~~~~~--~p~~--~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~ 270 (592)
...+..++.|+++.|+..|++.. .|+. ..+ .++..+ ..++.+.+...++.... ....+......+...+...
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHc
Confidence 33444559999999999999984 4553 123 444443 56778888888887762 1223333444446688889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 007695 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~ 350 (592)
|++++|.++|+++.+.... |...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 9999999999999997544 5777778889999999999999999999876 567666644544444466666799999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-------------------------------------------
Q 007695 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNI------------------------------------------- 387 (592)
Q Consensus 351 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~------------------------------------------- 387 (592)
+++.+.. +-+...+..+..++.+.|-...|.++..+
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 9999874 33666667777666666655444444332
Q ss_pred -----HHHc--CCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007695 388 -----MRIE--EFQPTLESC----TLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456 (592)
Q Consensus 388 -----m~~~--g~~~~~~~~----~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 456 (592)
+... ..++....| .=.+-++...|+..+++..|+.+...+......+-..+.++|...+++++|..+|+
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 2210 112111111 22345677889999999999999988765455677889999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------CCCHH-HHHHHHHHHHHcCC
Q 007695 457 ELEKDG-----FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE-------------APPFK-IQVSLCDMYARAGI 517 (592)
Q Consensus 457 ~m~~~g-----~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------~p~~~-~~~~Li~~~~~~g~ 517 (592)
.+.... ..++......|.-++...+++++|..+++.+.+... .||.. .+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 987642 123444467888999999999999999999986311 22332 33456777889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 518 ~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
..+|.+.++.+... -+-|+.....+...+...|...+|.+.++..... .|+.
T Consensus 432 l~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~ 483 (822)
T PRK14574 432 LPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRS 483 (822)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCcc
Confidence 99999999999776 4558888899999999999999999999777654 7776
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-12 Score=142.36 Aligned_cols=353 Identities=12% Similarity=0.008 Sum_probs=252.0
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH-HhhCHHHHHHHH
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL-REQNTQLYFKVA 244 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~-~~~~~~~~~~~~ 244 (592)
.++..+|...+ .......|....+...+..++ +.|++++|+..+++. ..|+...|..+-..+ ..+....+...+
T Consensus 62 ~g~~~~A~~~~--~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l 139 (765)
T PRK10049 62 LKQWQNSLTLW--QKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAM 139 (765)
T ss_pred cCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35677787777 322233444333444555555 899999999999987 345544455554444 567788899999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----HcCCH---HH
Q 007695 245 ELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI------VTSTVLVHMYS-----KAGNL---DR 310 (592)
Q Consensus 245 ~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~~~~~Li~~~~-----~~g~~---~~ 310 (592)
+..+... +.+...+..+..++...+..+.|++.++.... .|+. .....++..+. ..+++ ++
T Consensus 140 ~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 140 TQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 8887653 44566667788888889999999999987664 2331 11222333332 22334 77
Q ss_pred HHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHHcCCchHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 311 AKEAFESLRSH-GFQPDKK-VY----NSMIMAYVNAGQPKLGMSLVDMMITSGIE-RSEEIYLALLRSFAQCGDVRGAGQ 383 (592)
Q Consensus 311 A~~~~~~m~~~-g~~pd~~-t~----~~li~a~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~Ll~~~~~~g~~~~A~~ 383 (592)
|+..++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+...+.+ |+. ....+..+|...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 88889888854 1233321 11 12244556779999999999999987632 332 22335778999999999999
Q ss_pred HHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcC
Q 007695 384 ITNIMRIEEFQP---TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-----------KPD---DRCTASMIAAYGKKN 446 (592)
Q Consensus 384 ~~~~m~~~g~~~---~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-----------~pd---~~t~~~li~a~~~~g 446 (592)
.|+.+....-.. .......+..++...|++++|..+++.+....+ .|+ ...+......+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 999987653111 135566777788999999999999999987532 123 234556777889999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526 (592)
Q Consensus 447 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~ 526 (592)
+.++|+.+++++.... +.+...+..+...+...|++++|++.+++....... +...+..++..+...|++++|..+++
T Consensus 374 ~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 374 DLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999997753 445778889999999999999999999999986544 57788888889999999999999999
Q ss_pred HHHHc
Q 007695 527 FLEAK 531 (592)
Q Consensus 527 ~m~~~ 531 (592)
.+.+.
T Consensus 452 ~ll~~ 456 (765)
T PRK10049 452 DVVAR 456 (765)
T ss_pred HHHHh
Confidence 99885
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-10 Score=130.29 Aligned_cols=356 Identities=13% Similarity=0.011 Sum_probs=234.8
Q ss_pred Hccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHH---HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 199 LSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274 (592)
Q Consensus 199 ~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~ 274 (592)
+..+ +++.++-|.++ .. ..|.... ..+... ...+..++....+.+.+.. +-+....-.+--...+.|+.+
T Consensus 320 ~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~ 393 (987)
T PRK09782 320 LPVLLKEGQYDAAQKL-LA-TLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSR 393 (987)
T ss_pred HHHHHhccHHHHHHHH-hc-CCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHH
Confidence 4455 67777755544 33 4444332 222222 2244555555555555442 224444445555567788888
Q ss_pred HHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCC---HHHHHHH----------------------HHHHHh-CCC-CC
Q 007695 275 DAERILKKMNEN-G-IVPDIVTSTVLVHMYSKAGN---LDRAKEA----------------------FESLRS-HGF-QP 325 (592)
Q Consensus 275 ~A~~l~~~m~~~-g-~~pd~~~~~~Li~~~~~~g~---~~~A~~~----------------------~~~m~~-~g~-~p 325 (592)
+|.++|+..... + -.++...-+-|+..|.+.+. ..++..+ ++.... .+. ++
T Consensus 394 ~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~ 473 (987)
T PRK09782 394 EAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSP 473 (987)
T ss_pred HHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCC
Confidence 888888887662 1 22344445567777777655 2222222 111111 011 33
Q ss_pred --CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 326 --DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 326 --d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
+...|..+..++.. +++.+|...+.+..... |+......+...+...|++++|...|+.+... +|+...+..+
T Consensus 474 ~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l 548 (987)
T PRK09782 474 SYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA 548 (987)
T ss_pred CCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence 56777777777766 78888888777776643 55544444555566888888888888887554 4455556677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
...+.+.|+.++|...|++.....+. +...+..+...+...|++++|...|++..+. .|+...+..+..++.+.|++
T Consensus 549 a~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 549 ANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH
Confidence 77888888888888888888775422 2233333334445568889998888888763 46777888888888888999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
++|...+++....... +...++.+...+...|+.++|...+++..+.. +-++..+..+..++...|++++|...|++.
T Consensus 626 deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 626 PAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999888888887655 67788888888888888888888888887763 346777888888888889998888888888
Q ss_pred HHCCCCCCH
Q 007695 564 EAQGFAASE 572 (592)
Q Consensus 564 ~~~g~~pd~ 572 (592)
.+. .|+.
T Consensus 704 l~l--~P~~ 710 (987)
T PRK09782 704 IDD--IDNQ 710 (987)
T ss_pred Hhc--CCCC
Confidence 765 4544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-10 Score=133.97 Aligned_cols=264 Identities=12% Similarity=0.014 Sum_probs=183.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
+...|..+..++.. ++.++|...|.+.... .|+......+...+...|++++|...|+++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 56667777766665 7777788877776664 355544444455556788888888888887654 455556667777
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
++.+.|++++|..++++.+... +.+...+..+...+.+.|++++|...+++..+. .|+...|..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHH
Confidence 7788888888888888887754 223333444444455668888888888888766 3567788888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 416 A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
|...|++.....+. +...++.+..++...|+.++|+..|....+.. +-+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888775432 45566667777888888888888888877642 23456777788888888888888888888877
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 496 ~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.... +..+.-.......+..+++.|.+-+.+...
T Consensus 706 l~P~-~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 706 DIDN-QALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred cCCC-CchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5433 334555555556666666777666665543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-10 Score=121.99 Aligned_cols=283 Identities=11% Similarity=0.053 Sum_probs=203.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCchHH
Q 007695 270 ENCLEDAERILKKMNENGIVPDIVTSTVL-VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN--SMIMAYVNAGQPKLG 346 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~L-i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~--~li~a~~~~g~~~~A 346 (592)
.|+++.|.+.+....+.. ++...+..+ .....+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 688888888887765542 223333333 44447888889999998888765 55554333 335677888899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Q 007695 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL-------ESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 347 ~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~Li~~~~~~g~~~~A~~l 419 (592)
...++++.+.. +-+...+..+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99888888765 336778888888888889999999888888877643222 1333344444445556666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007695 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499 (592)
Q Consensus 420 f~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 499 (592)
++.+... .+.+......+..++...|+.++|..++.+..+. .|+.... ++.+....++.+++.+..+...+....
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 6665442 2346667778888888999999999999888773 4454222 223334558888899998888877655
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 500 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
|...+..+...|.+.+++++|...|+...+. .|+...|..+...+.+.|+.++|.++|++-..
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7778888999999999999999999988874 57777788888999999999999998887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-10 Score=122.23 Aligned_cols=288 Identities=14% Similarity=0.060 Sum_probs=204.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCch
Q 007695 268 AKENCLEDAERILKKMNENGIVPDI-VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK--KVYNSMIMAYVNAGQPK 344 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~li~a~~~~g~~~ 344 (592)
...|+++.|.+.+.+..+. .|+. ..+-.....+...|+++.|.+.|.+..+. .|+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 4578999999999887775 3443 33444567777889999999999888765 3443 23444577788899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH---HHHcCCHHHHHHHH
Q 007695 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT-LLVEA---YGQAGDPDQARSNF 420 (592)
Q Consensus 345 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~Li~~---~~~~g~~~~A~~lf 420 (592)
.|...++.+.+... -+..++..+...+...|+++.|.+.+..+.+.+.. +...+. .-..+ +...+..+.+...+
T Consensus 171 ~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999988753 36778888999999999999999999999888643 333331 11111 12333333334455
Q ss_pred HHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 421 DYMIRLGH---KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT---YTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 421 ~~m~~~g~---~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t---y~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
..+....+ +.+...+..+...+...|+.++|..++.+..+.. |+... ...........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 55554322 1267788888889999999999999999988753 33331 1111122233577888888888877
Q ss_pred hcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 495 ELGEAPPF--KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 495 ~~g~~p~~--~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
+.... |+ ....++...|.+.|++++|.+.|+........|++..+..+...+.+.|+.++|.+++++-.
T Consensus 327 k~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76444 45 67778899999999999999999964444456788888899999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=135.53 Aligned_cols=259 Identities=21% Similarity=0.224 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENG-IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~ 340 (592)
.+...+.+.|++++|+++++...... .+-|...|..+...+...++++.|.+.|+++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 33555556666666666664433332 12233334444445555666666666666665543 2234445555555 455
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE-FQPTLESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 341 g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~l 419 (592)
+++++|.+++....+.. ++...+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666655544332 344445555555666666666666666554321 233455555555556666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007695 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499 (592)
Q Consensus 420 f~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 499 (592)
|++.....+. |....+.++..+...|+.+++..++....+.. +.|+..+..+..++...|+.++|...+++..+....
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 6655553221 34445555555555565555555555544432 223334444555555555555555555555443322
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 500 PPFKIQVSLCDMYARAGIEKKALQALGF 527 (592)
Q Consensus 500 p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 527 (592)
|+.+...+.+++...|+.++|..+.++
T Consensus 247 -d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 -DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp --HHHHHHHHHHHT--------------
T ss_pred -ccccccccccccccccccccccccccc
Confidence 455555555555555555555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-13 Score=134.50 Aligned_cols=261 Identities=16% Similarity=0.127 Sum_probs=113.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSHGF-QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~ 375 (592)
.+...+.+.|++++|+++++....... +.|...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 568888999999999999966544321 334555556666777889999999999999987644 66777788877 789
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007695 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG-HKPDDRCTASMIAAYGKKNLLDKALNL 454 (592)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~t~~~li~a~~~~g~~~~A~~l 454 (592)
+++++|.+++....+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|+..
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999877655 3566778889999999999999999999987642 345777888888999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 007695 455 LLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533 (592)
Q Consensus 455 ~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 533 (592)
+++..+. .|+ ......++..+...|+.+++..++....+.. ..|...+..+..+|...|+.++|+.+|++.... .
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence 9999884 454 6778889999999999999999998887764 335667889999999999999999999998876 3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 534 QMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 534 ~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+.|+.....+..++.+.|+.++|.+++++...
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 45788888999999999999999999887643
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.5e-10 Score=115.83 Aligned_cols=285 Identities=14% Similarity=0.055 Sum_probs=215.9
Q ss_pred HHhhCHHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCH
Q 007695 232 LREQNTQLYFKVAELVLSEESFQTNVRD-YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST--VLVHMYSKAGNL 308 (592)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~--~Li~~~~~~g~~ 308 (592)
+..|++..+.+.....-.. .+++.. |.....+..+.|+++.|.+.|.++.+. .|+...+. .....+...|++
T Consensus 95 ~~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred HhCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 3457777666555543221 222333 333345558899999999999999875 45554333 446788999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhCCCHHHH
Q 007695 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE-------EIYLALLRSFAQCGDVRGA 381 (592)
Q Consensus 309 ~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~Ll~~~~~~g~~~~A 381 (592)
+.|...++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999875 557888999999999999999999999999987654322 1334444444455566677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 382 ~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
.++++.+...- +.+......+...+...|+.++|..++++..+. .||... .++.+....++.++++...+...+.
T Consensus 249 ~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh
Confidence 77777765442 567888999999999999999999999998874 344421 2344445669999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 462 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
. +-|...+.++...|.+.+++++|...|+...+. .|+...+..+...+.+.|+.++|..++++...
T Consensus 324 ~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 H-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3 345667889999999999999999999999874 58888999999999999999999999987644
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-09 Score=114.26 Aligned_cols=356 Identities=14% Similarity=0.092 Sum_probs=254.6
Q ss_pred CCchhHHHHHHhhcC---CCHhhHHHHHHHHH-hhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 205 EDPSPLLAEWKELLQ---PSRIDWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERIL 280 (592)
Q Consensus 205 g~~~~A~~~~~~~~~---p~~~t~~~lL~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~ 280 (592)
|+.++|.+++.+.++ .+...|.+|-..+- +|+.+.+.... ++..+-.+.|...|..+-....+.|+++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 888999999888743 34666888888774 44555555432 2333444567778999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 007695 281 KKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK----KVYNSMIMAYVNAGQPKLGMSLVDMMITS 356 (592)
Q Consensus 281 ~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 356 (592)
.+..+.. +++...+-.=+..|-+.|+...|.+.|.++....-+.|. .+--.++..+...++.+.|.+.+......
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 9999874 335555556677889999999999999999876311121 23334556677777778888888877762
Q ss_pred C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---------------------------CCCCCHHHHHHHHHHHH
Q 007695 357 G-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE---------------------------EFQPTLESCTLLVEAYG 408 (592)
Q Consensus 357 g-~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~---------------------------g~~~~~~~~~~Li~~~~ 408 (592)
+ -..+...++.++..|.+...++.+......+... ++.++..++ -+.-++.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~ 388 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLV 388 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhh
Confidence 2 3346677889999999999999988887777652 122333331 2222333
Q ss_pred HcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 409 QAGDPDQARSNFDYMIRLG--HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486 (592)
Q Consensus 409 ~~g~~~~A~~lf~~m~~~g--~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 486 (592)
.....+....+........ +.-+...|.-+..+|...|++.+|+.+|..+...-..-+...|-.+..+|-..|..++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 4444444444445455544 33456678889999999999999999999998875555678899999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA--------KKEQMGPDDFERIINGLLAGGFLQDAQR 558 (592)
Q Consensus 487 ~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~a~~~~g~~~~A~~ 558 (592)
.+.|......... +...-..|...+...|+.++|.+++..+.. ....|....-......|.+.|+.++=+.
T Consensus 469 ~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999886544 667777888889999999999999988542 1223333334445677788899888777
Q ss_pred HHHHHHH
Q 007695 559 VHGLMEA 565 (592)
Q Consensus 559 l~~~m~~ 565 (592)
+...|+.
T Consensus 548 t~~~Lv~ 554 (895)
T KOG2076|consen 548 TASTLVD 554 (895)
T ss_pred HHHHHHH
Confidence 7666664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-09 Score=114.27 Aligned_cols=288 Identities=15% Similarity=0.045 Sum_probs=208.6
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNV-RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~-~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 311 (592)
..++...+.+.+....+ ..|+. ..|-....++.+.|+++.|.+.|.+..+....++....-.....+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 56777777777766543 23443 334455677888999999999999987753232333444468888999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhCCCHHHHHHHHHH
Q 007695 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL-ALLRSF---AQCGDVRGAGQITNI 387 (592)
Q Consensus 312 ~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~Ll~~~---~~~g~~~~A~~~~~~ 387 (592)
...++.+.+.. +-+..++..+...|.+.|+++.|.+++..+.+.++. +...+. .-..++ ...+..+.+...+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875 557788999999999999999999999999998754 333332 111222 222222333334444
Q ss_pred HHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 388 MRIEE---FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRC--T-ASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 388 m~~~g---~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t--~-~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
+.... .+.+...+..+...+...|+.++|..++++..+.. ||... + ..........++.+.+...++...+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 44332 12478899999999999999999999999998854 34332 1 22222334457888888888887664
Q ss_pred CCCCC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 462 GFEPG-P--ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 462 g~~p~-~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
.|+ . ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 329 --~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 --VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred --CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333 3 56668899999999999999999965554557888889999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-09 Score=115.18 Aligned_cols=328 Identities=14% Similarity=0.053 Sum_probs=259.3
Q ss_pred HHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 232 LREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311 (592)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 311 (592)
++.|+.+++..++.+++.+. +.+...|.+|...|-..|+.+++...+-..-..+ +-|...|..+.....+.|+++.|
T Consensus 150 farg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 46788999999999998764 5677789999999999999999998886666553 33778999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhCCCHHHHHHHHHH
Q 007695 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYL----ALLRSFAQCGDVRGAGQITNI 387 (592)
Q Consensus 312 ~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~Ll~~~~~~g~~~~A~~~~~~ 387 (592)
.-.|.+..+.. +++...+---...|-+.|+...|...|.++.....+.|..-+. ..++.+...++-+.|.+.+..
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999875 6666677778889999999999999999999865433333333 345667777888899998888
Q ss_pred HHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----------------------H----HHHH
Q 007695 388 MRIEE-FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT----------------------A----SMIA 440 (592)
Q Consensus 388 m~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~----------------------~----~li~ 440 (592)
....+ -..+...++.++..|.+...++.|......+......+|..-| . .+.-
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i 385 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI 385 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence 77632 1445677889999999999999999988888773222222211 1 2333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 441 AYGKKNLLDKALNLLLELEKDGFEP--GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518 (592)
Q Consensus 441 a~~~~g~~~~A~~l~~~m~~~g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~ 518 (592)
++.+.+..+....+...+.+..+.| +...|.-+.++|...|++++|..++..+......-+..+|--+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 4555666666666666666666433 46789999999999999999999999999876666788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 519 ~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
+.|.+.++.+... .+-+.+.--+|...+.+.|+.++|.+++..|.
T Consensus 466 e~A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999875 23355556677888999999999999999864
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-08 Score=100.80 Aligned_cols=391 Identities=12% Similarity=0.098 Sum_probs=263.1
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhh----cCCCHhhHHHHHHHHHhhCHHH
Q 007695 165 WTEVAEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKEL----LQPSRIDWINLLDRLREQNTQL 239 (592)
Q Consensus 165 ~~~~~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~----~~p~~~t~~~lL~~~~~~~~~~ 239 (592)
|......+..|+.+| +.+..++...-.+.-.-+.+- ++..++.|+.+|+++ ++.|..=|-.+..-=..+|...
T Consensus 82 wEesq~e~~RARSv~--ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 82 WEESQKEIQRARSVF--ERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHhHHHHHHHHHHH--HHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHH
Confidence 555566777888888 444444433322333344455 899999999999986 4444444444444446688888
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 240 YFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 240 ~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
+.++++..+. ..|+...|++.|..=.+-+.++.|..+|++..-. .|++.+|--....=-++|++..|..+|....
T Consensus 160 aRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 160 ARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 8888888764 6899999999999999999999999999998764 5899999888888888999999988888776
Q ss_pred hC-CC-CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC----------------------------------------
Q 007695 320 SH-GF-QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG---------------------------------------- 357 (592)
Q Consensus 320 ~~-g~-~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g---------------------------------------- 357 (592)
+. |- .-+...|++....=.++..++.|.-+|+-.++.=
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 42 10 0112233333332233444444544444443321
Q ss_pred ---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HHHHHcCCHHHHHHHHHHHH
Q 007695 358 ---IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL--ESCTLLV--------EAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 358 ---~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~Li--------~~~~~~g~~~~A~~lf~~m~ 424 (592)
-+.|-.+|-..++.-...|+.+...++|+.....- +|-. ..|...| -.=....+++.+.++|+...
T Consensus 315 v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 12244445555555556666677777776666442 3321 1111111 11123556667777776666
Q ss_pred HcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007695 425 RLGHKPDDRCTASMIAAY----GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500 (592)
Q Consensus 425 ~~g~~pd~~t~~~li~a~----~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 500 (592)
+. ++....||.-+--.| .++.++..|.+++...+ |.-|-..+|...|..-.+.+.+|.+..+|.+.++.++.
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe- 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE- 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-
Confidence 62 222344554433333 34566777777776543 67788899999999889999999999999999998766
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
|..+|......=...|+.+.|..+|+...+... ....-.|.+.|.-=...|.++.|..+|+.+++..
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 888999888888899999999999998876532 1223357778887789999999999999998763
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-09 Score=102.61 Aligned_cols=289 Identities=16% Similarity=0.123 Sum_probs=204.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHHcCCc
Q 007695 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK------KVYNSMIMAYVNAGQP 343 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~t~~~li~a~~~~g~~ 343 (592)
.++.++|.++|-+|.+.... +..+.-+|.+.|-+.|..+.|+++.+.+.++ ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 46688888888888875222 4445567888888888888888888888763 442 2344566778888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT----LESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~Li~~~~~~g~~~~A~~l 419 (592)
|.|+.+|..+.+.+. .-......|+..|....+|++|..+-.++.+.+-.+. ...|.-|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 889888888877542 2456777888888888889998888888877654443 23466667777777888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 007695 420 FDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA 499 (592)
Q Consensus 420 f~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 499 (592)
+.+..+.+.+ .+..--.+-..+...|++..|++.+....+.+..--..+...|..+|...|+.++...++..+.+....
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 8888775432 333333455677888999999999988887765555677888888999999999999998888875433
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCC
Q 007695 500 PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL---AGGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 500 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~---~~g~~~~A~~l~~~m~~~g~ 568 (592)
+ ..-..+...-....-.+.|...+.+-.. ..|+...+..+|..-. ..|...+.+.+++.|....+
T Consensus 282 ~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 282 A--DAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred c--cHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 3 3344444444445556666666554443 3577778888887654 34667778888888875533
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-08 Score=100.24 Aligned_cols=374 Identities=13% Similarity=0.046 Sum_probs=244.2
Q ss_pred cccccCCchhHHHHHHhh--cCCCHhh-HHHHHHHHHhhCHHHHHHHHHHHhhhCCC-----------CCCHHHHHHHHH
Q 007695 200 SLEKEEDPSPLLAEWKEL--LQPSRID-WINLLDRLREQNTQLYFKVAELVLSEESF-----------QTNVRDYSKLID 265 (592)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~--~~p~~~t-~~~lL~~~~~~~~~~~~~~~~~~~~~~~~-----------~p~~~~y~~Li~ 265 (592)
.+.+.|+++.|+.-|+.. ..|+-.+ +|..|.+++.++.+...+.+..++.-.|. .|+....|--|.
T Consensus 285 tfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred eEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 445999999999999986 4688665 67777777888888888888887765543 233333333222
Q ss_pred -----HHHHcC--CHHHHHHHHHHHHHCCCCCCHHH---H------------------HHHHHHHHHcCCHHHHHHHHHH
Q 007695 266 -----AHAKEN--CLEDAERILKKMNENGIVPDIVT---S------------------TVLVHMYSKAGNLDRAKEAFES 317 (592)
Q Consensus 266 -----~~~~~g--~~~~A~~l~~~m~~~g~~pd~~~---~------------------~~Li~~~~~~g~~~~A~~~~~~ 317 (592)
-.-+.+ +.+++.-.--++..--+.||... | -.-..-|.++|+++.|.+++.-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 111111 12222222222222223343211 1 0112346788999999999888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH--cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 007695 318 LRSHGFQPDKKVYNSMIMAYVN--AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP 395 (592)
Q Consensus 318 m~~~g~~pd~~t~~~li~a~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~ 395 (592)
+.+..-+.-...-|.|-..+.- -.++..|.++-+..+..+ .-|....+.-.+.....|++++|.+.|++....+-.
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas- 522 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS- 522 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-
Confidence 7754322112222222222222 345666666666555432 123333333334445678999999999999866422
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475 (592)
Q Consensus 396 ~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 475 (592)
-+.....+.-.+-..|++++|++.|-++..- +.-+......+.+.|-...+..+|++++.+... -++.|+..++-|.+
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHH
Confidence 2233333445577889999999999887652 123566777788889999999999999877643 24556788899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCCHH
Q 007695 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL-LAGGFLQ 554 (592)
Q Consensus 476 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~-~~~g~~~ 554 (592)
.|-+.|+-.+|.+.+-.-.+. ++.+..+...|...|....-+++|...|++..- ++|+..-|..+|..| .+.|+++
T Consensus 601 lydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred Hhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHH
Confidence 999999999999887765543 455888999999999999999999999998754 678888899888665 5789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHhh
Q 007695 555 DAQRVHGLMEAQGFAASERLKVALISS 581 (592)
Q Consensus 555 ~A~~l~~~m~~~g~~pd~~~~~~l~~~ 581 (592)
+|..+|+...+. ++-|......|...
T Consensus 678 ka~d~yk~~hrk-fpedldclkflvri 703 (840)
T KOG2003|consen 678 KAFDLYKDIHRK-FPEDLDCLKFLVRI 703 (840)
T ss_pred HHHHHHHHHHHh-CccchHHHHHHHHH
Confidence 999999998764 55555444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-09 Score=113.94 Aligned_cols=380 Identities=12% Similarity=0.021 Sum_probs=270.5
Q ss_pred ccCCchhHHHHHHhhcCCCHhhHHHHHHH--HHh-----hCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 203 KEEDPSPLLAEWKELLQPSRIDWINLLDR--LRE-----QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p~~~t~~~lL~~--~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~ 275 (592)
+.|+.+.|+..|.+..+.|+..-++++.- +.. .+...++..+....... ..|+...+.|...|.-.|++..
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~ 288 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYER 288 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHH
Confidence 88999999999999865555444444331 211 22444555555555444 3455677899999999999999
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCchHHHHHHH
Q 007695 276 AERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK--KVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 276 A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
+..+...+...-.. .-..+|-.+.++|...|++++|...|.+..+. .|+. ..+.-+...|.+.|+++.+...|+
T Consensus 289 v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 289 VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHH
Confidence 99999998875311 12345778999999999999999999888765 3443 445568889999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----
Q 007695 352 MMITSGIERSEEIYLALLRSFAQCG----DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM---- 423 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m---- 423 (592)
...... +-+..|...|...|...+ ..+.|..++......- +.|...|-.+...|-+.. ...++.+|...
T Consensus 367 kv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L 443 (1018)
T KOG2002|consen 367 KVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDIL 443 (1018)
T ss_pred HHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHH
Confidence 998863 446788888888888775 4677777777777654 667888888887776654 44447766544
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 424 IRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD---GFE------PGPATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 424 ~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~---g~~------p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
...+-.+.....|.+...+...|++.+|...|...... -.. ++..+--.+.+++-..++++.|.+.|..+.
T Consensus 444 ~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Il 523 (1018)
T KOG2002|consen 444 ESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSIL 523 (1018)
T ss_pred HHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34455578889999999999999999999999887654 112 333344456677778889999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHH
Q 007695 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG-FAASER 573 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g-~~pd~~ 573 (592)
+..+. -+..|.-+..+....++..+|...++..... ..-++..++.+...+.....+.-|.+-|..+.+.- ..+|..
T Consensus 524 kehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 524 KEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred HHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 86432 2234444443444457888899999888776 45578888888889999999999999887777552 235554
Q ss_pred HHHHHHhhhhhccCCCCCC
Q 007695 574 LKVALISSQTFNRQRQPTR 592 (592)
Q Consensus 574 ~~~~l~~~~~~~~l~qp~r 592 (592)
..++|-+ .....+.+|+|
T Consensus 602 sliaLGN-~~~~~l~~~~r 619 (1018)
T KOG2002|consen 602 SLIALGN-VYIQALHNPSR 619 (1018)
T ss_pred HHHHhhH-HHHHHhccccc
Confidence 4444444 34444444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.8e-09 Score=102.92 Aligned_cols=300 Identities=14% Similarity=0.077 Sum_probs=232.4
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 262 KLIDAHAK--ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 262 ~Li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
.+..+..+ .|++..|+++..+-.+++-.| ...|..-..+.-..|+.+.+-.++.+.-+..-.++...+-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 699999999999988876543 445666777888899999999999999876335667777788888999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCC
Q 007695 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL-------ESCTLLVEAYGQAGD 412 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~Li~~~~~~g~ 412 (592)
.|+++.|..-++++.+.+.. ++.......++|.+.|++.....++..+.+.+.-.+. .+|..++.-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999887644 7788999999999999999999999999998865553 356666666655556
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492 (592)
Q Consensus 413 ~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 492 (592)
.+.-...++..... .+-+...-.+++.-+.+.|+.++|.++..+..+.+..|+. +..-.+.+.++...-.+..+.
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHH
Confidence 66655566655442 3334555667788889999999999999999888777762 222345566777777777776
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 007695 493 ISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571 (592)
Q Consensus 493 m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd 571 (592)
-.+.... ++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|+.+..+|.+.|+..+|.+++++-...-..|+
T Consensus 320 ~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 320 WLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 6655333 558899999999999999999999996665 578899999999999999999999999998875544444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.4e-09 Score=101.26 Aligned_cols=295 Identities=17% Similarity=0.205 Sum_probs=219.8
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHH
Q 007695 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV------TSTVL 298 (592)
Q Consensus 225 ~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------~~~~L 298 (592)
|-+=++.+.+...+.+++.+-.+.+.. +-+..+.-+|.+.|-+.|.++.|+++.+.+..+ ||.. ..-.|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL 113 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQL 113 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence 444444444555555666666655422 334456678899999999999999999999886 5532 34567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE----EIYLALLRSFAQ 374 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~Ll~~~~~ 374 (592)
..-|...|-++.|.++|..+.+.| .--......|+..|-...+|++|++.-+++...+-.+.. ..|.-|...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 788889999999999999999755 334567888999999999999999999999887654432 345666677777
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 454 (592)
..+.+.|...+.+..+.+ +.++.+--.+...+...|+++.|.+.++...+.++..-..+...+..+|.+.|+.++...+
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 889999999999998876 4556666778889999999999999999999976655567788899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Q 007695 455 LLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA---GIEKKALQALGFLEA 530 (592)
Q Consensus 455 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~---g~~~~A~~~~~~m~~ 530 (592)
+..+.+.. ++...-..+-+......-.+.|...+.+-... +|+...+..|+..-... |...+.+..++.|..
T Consensus 272 L~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 272 LRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 99998864 33333444444444455566666666555443 58899999999876543 445556666666654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-10 Score=118.48 Aligned_cols=287 Identities=16% Similarity=0.046 Sum_probs=223.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCCchHHHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG--FQPDKKVYNSMIMAYVNAGQPKLGMSL 349 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~li~a~~~~g~~~~A~~l 349 (592)
+..+|...|..+..+ +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 467899999997665 33344566778899999999999999999998652 12366788888776532 223333
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 007695 350 VD-MMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428 (592)
Q Consensus 350 ~~-~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~ 428 (592)
+. .+.+. -+-.+.+|.++.++|.-.++.+.|.+.|++..+.+ +....+|+.+..-+.....+|.|...|+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--- 483 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG--- 483 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence 32 33333 34468999999999999999999999999999875 44789999999999999999999999998876
Q ss_pred CCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007695 429 KPDDRCTA---SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505 (592)
Q Consensus 429 ~pd~~t~~---~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 505 (592)
.|...|+ .+.-.|.+.++++.|.-.|+...+-+ +-+.+....+...+.+.|+.++|++++++......+ |+-.-
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~ 560 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCK 560 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhH
Confidence 4555554 56678999999999999999887743 334566777778889999999999999999987766 44444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
-.-+..+...+++++|+..++++.+. .+-+...|..+...|.+.|+.+.|+.-|.-+.+..-++..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 44556677889999999999999885 3334556888899999999999999999988876544444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-09 Score=113.25 Aligned_cols=361 Identities=13% Similarity=0.098 Sum_probs=227.1
Q ss_pred ccCCchhHHHHHHhh--cCCCHhhHHHHHHHHH-hh-----CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 203 KEEDPSPLLAEWKEL--LQPSRIDWINLLDRLR-EQ-----NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~~-~~-----~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~ 274 (592)
+.|++..|..-|+.. ..||..--..+|.++. .. ..+.+..+....... .+.|...|-.+...+-... ..
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d-~~ 430 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTD-PW 430 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcC-hH
Confidence 555555555555554 2344444444444441 11 123333333333222 2344445554444444333 33
Q ss_pred HHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCC------CCHHHHHHHHHHHHHcC
Q 007695 275 DAERILKKM----NENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH---GFQ------PDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 275 ~A~~l~~~m----~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---g~~------pd~~t~~~li~a~~~~g 341 (592)
.++.+|... ...+-.+-....|.+...+...|++++|...|...+.. ... +++.+-..+...+-..+
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 334444432 33444456666677777777777777777777666543 111 22223334455555566
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 342 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
+.+.|.+.|....... +--...|.-++......+...+|...++.....+ ..+...++.+...|.+...+..|..-|.
T Consensus 511 ~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred hhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 7777777777776642 1123334444433334466777888888777665 5667777778888888888888888776
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 422 YMIRL-GHKPDDRCTASMIAAYGK------------KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQ 488 (592)
Q Consensus 422 ~m~~~-g~~pd~~t~~~li~a~~~------------~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 488 (592)
...+. ...+|..+.-.|-+.|.+ .+..++|+++|.+.++.. +-|...-+-+.-+++..|++..|..
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~d 667 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARD 667 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHH
Confidence 66553 223566666566655532 345788999998887753 3455666667778899999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 489 LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK-EQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 489 l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
+|.+..+.... ...+|..+.++|..+|++..|.++|+....+- ..-++...+.|..++.+.|.+.+|.+.+......
T Consensus 668 IFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~- 745 (1018)
T KOG2002|consen 668 IFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL- 745 (1018)
T ss_pred HHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-
Confidence 99999987553 56789999999999999999999999876542 3446778899999999999999999988777654
Q ss_pred CCCCH
Q 007695 568 FAASE 572 (592)
Q Consensus 568 ~~pd~ 572 (592)
.|..
T Consensus 746 -~p~~ 749 (1018)
T KOG2002|consen 746 -APSN 749 (1018)
T ss_pred -CCcc
Confidence 4444
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-08 Score=102.56 Aligned_cols=293 Identities=14% Similarity=0.114 Sum_probs=227.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF--QPDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~li~a~~~~g 341 (592)
..++-.....+++.+=.+.....|++-+...-+....+.-...++++|..+|+++.+... --|..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345566678888998888899988886666666666677788999999999999987631 125677777765432222
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 342 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
.+.++.+-.-.--+--+.|+..+.+-|.-.++.++|...|+...+.+ +....+|+.+.+-|...++...|..-++
T Consensus 314 ----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 ----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred ----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 22222222211112345788889999999999999999999999886 6668899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007695 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP-GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 500 (592)
...+-.+ .|-..|-.+-++|.-.+...-|+-+|++... ++| |...+.+|..+|.+.++.++|.+.|......|-.
T Consensus 389 rAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt- 464 (559)
T KOG1155|consen 389 RAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT- 464 (559)
T ss_pred HHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-
Confidence 9998654 4889999999999999999999999999877 445 5789999999999999999999999999987755
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKK---EQMGPDDF---ERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~---~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+...+..|.+.|.+.++.++|...|+...+.. -..++.+. -.|..-+.+.+++++|..+......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 77899999999999999999999988765521 11233232 2255667889999999876655543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-09 Score=114.64 Aligned_cols=284 Identities=14% Similarity=0.024 Sum_probs=217.3
Q ss_pred CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI--VPDIVTSTVLVHMYSKAGNLDRAKE 313 (592)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~~~~Li~~~~~~g~~~~A~~ 313 (592)
+..++...+.... .. +.-+..+...+..+|...+++++|+++|+.+.+... .-+...|.+.+--+-+.- ++.
T Consensus 334 ~~~~A~~~~~klp-~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLP-SH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALS 407 (638)
T ss_pred HHHHHHHHHHhhH-Hh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHH
Confidence 3555666665522 22 222335667888999999999999999999987531 126778888876554422 222
Q ss_pred HH-HHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 314 AF-ESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 314 ~~-~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
.+ +.+.... +-.+.+|-++.++|.-+++.+.|++.|++.++.+ | ...+|+.+..-+.....+|.|...|+.....
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22 2222222 4577899999999999999999999999998754 4 7889999999999999999999999988844
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007695 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471 (592)
Q Consensus 392 g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 471 (592)
. +.+-.+|.-|...|.+.++++.|+-.|++...-++. +.+....+...+-+.|+.++|+.+|++..... +-|+..--
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 3 333455666788999999999999999999885543 56667777788899999999999999987653 22333444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 472 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..+..+...+++++|++.++++.+.-.+ +..++..+...|.+.|+.+.|+.-|-.+.+.+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 4556678889999999999999986544 67889999999999999999999998887653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-10 Score=121.21 Aligned_cols=268 Identities=17% Similarity=0.084 Sum_probs=155.5
Q ss_pred hhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 007695 248 LSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK 327 (592)
Q Consensus 248 ~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 327 (592)
+...|+.||.+||..+|.-||..|+++.|- +|..|.....+.+...|+.++.+...+++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 345566777777777777777777777666 7777766666666667777777766666666554 4666
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-EFQPTLESCTLLVEA 406 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~Li~~ 406 (592)
.||+.|..+|...|+... |+...+ -.-.+...+...|.......++..+... +.-||.. ..+..
T Consensus 84 Dtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~ill 148 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILL 148 (1088)
T ss_pred hHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHH
Confidence 677777777777776654 222221 1222334444555544444444443222 2223322 23344
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 407 YGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNL-LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN 484 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~-~pd~~t~~~li~a~~~~g~-~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 484 (592)
....|.++.+.+++..+..... .|-.+ ++.-+...+. +++-..+-+...+ .|++.+|.+++.+-..+|+.+
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchh
Confidence 4455666666666655543211 11111 2333333322 2332222222222 577777777777777777777
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~ 552 (592)
.|..++.+|.+.|+..+..-|-.|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+...|.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777777777777666655555544 66667777777777777777777777777666666444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-09 Score=100.25 Aligned_cols=200 Identities=17% Similarity=0.103 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34556677777777888888888887776653 2245666777777777777777777777777653 345566667777
Q ss_pred HHHHcCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGI-ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~ 414 (592)
.+...|++++|...+.+...... ......+..+..++...|++++|...+.+..... +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 77777777777777777765321 1233455556666666677777776666666543 334555666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
+|...+++.... ...+...+..+...+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666554 22234444455555666666666666655543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.26 E-value=7e-09 Score=99.85 Aligned_cols=200 Identities=15% Similarity=0.099 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
...+..+...|...|++++|...+++..... +.+...+..+...|...|++++|...|++....... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3444555555555555555555555555443 333455555555666666666666666655554322 33444555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 442 YGKKNLLDKALNLLLELEKDGF-EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~ 520 (592)
|...|++++|...+........ ......+..+..++...|++++|...+.+....... +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 6666666666666666554321 122344555556666667777777776666654332 45566666667777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 521 ALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 521 A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
|...+++.... .+.++..+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777766654 233455555666666677777777776666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-08 Score=99.35 Aligned_cols=290 Identities=13% Similarity=0.091 Sum_probs=218.6
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhCCCCCC
Q 007695 250 EESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLD-RAKEAFESLRSHGFQPD 326 (592)
Q Consensus 250 ~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~-~A~~~~~~m~~~g~~pd 326 (592)
..|++-+...-+....+.-...++++|+.+|+++.++.+- -|..+|+.++-.-..+..+. .|..+++ .- +--
T Consensus 255 ~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-id----KyR 329 (559)
T KOG1155|consen 255 SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-ID----KYR 329 (559)
T ss_pred hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hc----cCC
Confidence 4566655555555555667788999999999999987321 16778888775544433332 2333322 22 234
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 327 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
+.|...+.+-|.-.++.++|...|++.++.+.. ....|+.+..-|....+...|...++...+.. +.|-..|-.|..+
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 457778888899999999999999999987533 56788999999999999999999999999886 7889999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 486 (592)
|.-.+...-|+-.|++.....+ -|...|.+|-.+|.+.++.++|++.|.+....| ..+...|..|...|-+.++..+|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999988544 388999999999999999999999999998876 44678899999999999999999
Q ss_pred HHHHHHHHhc----CCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 487 EQLLGKISEL----GEA-P-PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560 (592)
Q Consensus 487 ~~l~~~m~~~----g~~-p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~ 560 (592)
.+.|.+.++. |.. | ......-|...+.+.+++++|.......... ....++|..++
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------------------~~e~eeak~Ll 547 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------------------ETECEEAKALL 547 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------------------CchHHHHHHHH
Confidence 9999887652 322 2 2233334666677788877776544333221 23446666677
Q ss_pred HHHHHC
Q 007695 561 GLMEAQ 566 (592)
Q Consensus 561 ~~m~~~ 566 (592)
+++...
T Consensus 548 Reir~~ 553 (559)
T KOG1155|consen 548 REIRKI 553 (559)
T ss_pred HHHHHh
Confidence 666543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-08 Score=111.99 Aligned_cols=250 Identities=11% Similarity=0.001 Sum_probs=154.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---------cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 007695 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN---------AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 377 (592)
++++|...|++..+.. +-+...|..+..+|.. .+++++|...+++..+.+. -+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 3567777777777652 2234455555444432 2346778888888777643 266777777777788888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~ 457 (592)
+++|...|++..+.+ +.+...+..+...|...|++++|...+++..+..+.+ ...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 888888888887775 4556777778888888888888888888887754432 22223334445567788888888887
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC
Q 007695 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMG 536 (592)
Q Consensus 458 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~ 536 (592)
..+...+-+...+..+..++...|++++|...+.++...... +....+.+...|...| +.|...++.+.+... .+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 765432223445666777777888888888888776554222 3444555555666666 466666666554211 111
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 537 PDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 537 ~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
. +..+-..|.-.|+.+.+... +++.+.
T Consensus 509 ~--~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 509 N--PGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred C--chHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1 11133444556666665544 666654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-07 Score=92.02 Aligned_cols=286 Identities=15% Similarity=0.080 Sum_probs=222.2
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 312 (592)
..|++..+.+.+...- +.+-. ....|..-..+.-+.|+.+.+-.++.+..+.--.++...+-+........|+++.|.
T Consensus 96 ~eG~~~qAEkl~~rna-e~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNA-EHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhh-hcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 4566666666555432 22222 223455666777889999999999999988644567777888888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHH
Q 007695 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE-------EIYLALLRSFAQCGDVRGAGQIT 385 (592)
Q Consensus 313 ~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~Ll~~~~~~g~~~~A~~~~ 385 (592)
.-.+++.+.+ +.++........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999998876 667889999999999999999999999999998865444 35777777777777777766677
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC
Q 007695 386 NIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFE 464 (592)
Q Consensus 386 ~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~ 464 (592)
+.....- ..+...-.+++.-+.++|+.++|.++..+..+++..|.. ...-.+.+-++...-++..+.-.+. +..
T Consensus 253 ~~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~ 327 (400)
T COG3071 253 KNQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPED 327 (400)
T ss_pred HhccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCC
Confidence 7766542 445677778889999999999999999998887766652 2233566778887777777665443 444
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 465 PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 465 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
| ..+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+.++|.+.|+..+|.+++++...
T Consensus 328 p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 328 P--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred h--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4 7788899999999999999999997665 568999999999999999999999999887654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=117.28 Aligned_cols=264 Identities=16% Similarity=0.143 Sum_probs=147.8
Q ss_pred cCCCHhhHHHHHHHHHhhC-HHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007695 218 LQPSRIDWINLLDRLREQN-TQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTST 296 (592)
Q Consensus 218 ~~p~~~t~~~lL~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~ 296 (592)
..|+++||.+++..++..+ .+.+. .+. +++..+.+.+...++.++.+..+.++.+.+. .|-..||+
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~-fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFP-FMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chh-hhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 6677777777777775433 33333 332 3334445556666777777777777766555 46677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhC
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT-SGIERSEEIYLALLRSFAQC 375 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~~~ 375 (592)
.|..+|...||+.. |+...+ -.-.+...+...|.......++....- .+.-||..+ ++......
T Consensus 88 ~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~e 152 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLE 152 (1088)
T ss_pred HHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHH
Confidence 77777777777655 222221 122333444455555555444444321 123334332 33334445
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007695 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455 (592)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~ 455 (592)
|-++.+.+++..++...-.- .... ++.-+.. ......++.+......-.|++.+|..++.+-.-+|+.+.|..++
T Consensus 153 glwaqllkll~~~Pvsa~~~-p~~v--fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWNA-PFQV--FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHhhCCcccccc-hHHH--HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 66666666665554332111 1111 1221111 12222333333322111477777777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 007695 456 LELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517 (592)
Q Consensus 456 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~ 517 (592)
.+|.+.|++.+.+-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.+.|.
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777777777666666644 66666777777777777777777777776666666444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-08 Score=108.33 Aligned_cols=265 Identities=12% Similarity=-0.014 Sum_probs=189.1
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 007695 255 TNVRDYSKLIDAHAK-----ENCLEDAERILKKMNENGIVP-DIVTSTVLVHMYSK---------AGNLDRAKEAFESLR 319 (592)
Q Consensus 255 p~~~~y~~Li~~~~~-----~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~---------~g~~~~A~~~~~~m~ 319 (592)
.+...|...+.+-.. .+++++|..+|++..+. .| +...|..+..+|.. .+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 455566666665322 23468999999999886 44 45566666555542 245889999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 320 ~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
+.. +.+..++..+...+...|++++|...|++..+.+ +.+...+..+..+|...|++++|...++...+.. +.+...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhh
Confidence 875 5578888899899999999999999999999875 3357788889999999999999999999999875 333444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP-ATYTVLVDWLG 478 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~ 478 (592)
+..++..+...|++++|...+++.......-+...+..+..+|...|+.++|...+.++... .|+. ...+.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 44455567778999999999999876532224455677778888999999999999887553 3443 33445555666
Q ss_pred HcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 479 RLQLINEAEQLLGKISELGE-APPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 479 ~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..| +.+...++.+.+... .+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 666 477777777654321 2222222 44446667777777666 777654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.2e-07 Score=94.40 Aligned_cols=300 Identities=14% Similarity=0.041 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
..|-.....+...|++..|..++....+.... +...|-+-+..-..+..++.|..+|.+.... .|+...|.--++.-
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLE 661 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHH
Confidence 33444445555566666666666666554322 5555666666666666666666666665543 45666665555555
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417 (592)
Q Consensus 338 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 417 (592)
--.+..++|++++++.++. ++.-.-.|..+.+.+-+.++++.|...|..-.+. ++-....|-.|...=-+.|++-.|.
T Consensus 662 r~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHH
Confidence 5566666666666666553 2222345555566666666666666665544332 2334455666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
.+|+..+-.+++ +...|-..|..=.+.|+.++|..++.+.++. ++.+...|..-|....+.++-......+++.
T Consensus 740 ~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc---- 813 (913)
T KOG0495|consen 740 SILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC---- 813 (913)
T ss_pred HHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc----
Confidence 666666665543 5566666666666667776666666555443 3334455555555554444433333222222
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 498 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
.-|+.+..++...|-...++++|...|.+....+ +-+-++|.-+...+.++|.-++-.+++...... +|..
T Consensus 814 -e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~h 884 (913)
T KOG0495|consen 814 -EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTH 884 (913)
T ss_pred -cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCC
Confidence 2367778888888888999999999999998864 335678998999999999988888999888754 5555
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.6e-11 Score=84.94 Aligned_cols=47 Identities=34% Similarity=0.645 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
|+.+||++|++|++.|++++|.++|++|.+.|++||..||+.||++|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.7e-11 Score=84.90 Aligned_cols=50 Identities=32% Similarity=0.518 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK 304 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~ 304 (592)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.2e-08 Score=101.80 Aligned_cols=172 Identities=15% Similarity=0.082 Sum_probs=129.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
...|++++|.+.+++.....-.-....|| +--.+-..|++++|+..|-.+..- +.-+...+..+...|....+..+|.
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 34678999999999888743222222333 333567789999999999887542 2345677778888899999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 488 ~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
+++.+.... ++.|+.+..-|...|-+.|+-..|.+..-.--.- ++.+..+..-|..-|.....+++|+.+|++.- -
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--l 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--L 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--h
Confidence 999887765 4448899999999999999999998875433222 56678888888999999999999999999874 4
Q ss_pred CCCCH-HHHHHHHhhhhhc
Q 007695 568 FAASE-RLKVALISSQTFN 585 (592)
Q Consensus 568 ~~pd~-~~~~~l~~~~~~~ 585 (592)
+.|+. .+...+-.|.+..
T Consensus 655 iqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred cCccHHHHHHHHHHHHHhc
Confidence 79999 5555555555544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-09 Score=102.07 Aligned_cols=228 Identities=14% Similarity=0.112 Sum_probs=138.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHh
Q 007695 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY-LALLRSFAQ 374 (592)
Q Consensus 296 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~Ll~~~~~ 374 (592)
+.+.++|.+.|-+.+|.+.|+.-++. .|-+.||-.|-.+|.+..++..|+.++.+-++. .|-.+|| .-..+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 45666777777777777777666655 566666767777777777777777777666553 3333443 334555666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 454 (592)
.++.++|.++|+...+.. +.++.+..++...|.-.++++.|+..+..+.+.|+. +...|+.+--+|...+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 666666777766666554 455666666666666666666666666666666664 555666666666666666666666
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 455 LLELEKDGFEPGP--ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 455 ~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
|.+....-..|+. ..|-.+-......|++..|.+.|+-....+.. +...++.|.-.-.+.|+++.|..++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 6665544333332 33444444455556666666666665554433 455666666666666666666666665544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-07 Score=92.96 Aligned_cols=223 Identities=13% Similarity=0.068 Sum_probs=176.7
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
+.-.|+.-.|..-|+..+.....+ ...|--+..+|....+.++.++.|+.....+ +-|..+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 344688889999999998875443 3338888888999999999999999999887 66788999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 417 ~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
..=|++.+...+. +...|..+--+..+.+.++++...|++.++. ++--+..|+.....+...++++.|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999999885432 4556666666667888999999999998764 4556789999999999999999999999998865
Q ss_pred CCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 497 GEA-------PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 497 g~~-------p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
... +.+.+.-+++..--+ +++..|..++.+..+.+ +-....|..|...-.+.|+.++|+++|++-..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322 222333344433334 89999999999998763 23455789999999999999999999997654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-06 Score=89.77 Aligned_cols=304 Identities=11% Similarity=0.030 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
.+|+.-.+.|.+.+.++-|..+|....+- ++-+...|......--..|..+....+|++....- +-....|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 45666666677777777777777776664 23355556666655556677777777777776552 33445566666666
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417 (592)
Q Consensus 338 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 417 (592)
...|+...|..++.+..+.... +...+...+..-.....++.|..+|.+.... .|+...|.--+....-.++.++|.
T Consensus 595 w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 6777777777777777665433 6666777777777777777777777766653 456666666666666667777777
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 418 SNFDYMIRLGHKPDD-RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~-~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
+++++..+. -|+- ..|..+-+.+-+.++++.|...|..=.+. ++-....|..|...-.+.|.+-.|..++++..-.
T Consensus 672 rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 672 RLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 777666653 2332 34445555666666666666666543221 2223345555555556666777777777776666
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------------------CCCCCHHHHHHHHHHH
Q 007695 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK-----------------------------KEQMGPDDFERIINGL 547 (592)
Q Consensus 497 g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----------------------------~~~~~~~~~~~li~a~ 547 (592)
+.+ +...|-..|.+-.+.|+.+.|..+..+..+. ...-|+...-.+...+
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 555 6667777777777777777666654333221 0123344444555566
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 548 LAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 548 ~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
-...+++.|.+.|.+.... -||.
T Consensus 828 w~e~k~~kar~Wf~Ravk~--d~d~ 850 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKK--DPDN 850 (913)
T ss_pred HHHHHHHHHHHHHHHHHcc--CCcc
Confidence 6667777888888777654 4444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-07 Score=99.19 Aligned_cols=291 Identities=14% Similarity=0.100 Sum_probs=201.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHc--
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY-NSMIMAYVNA-- 340 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~~li~a~~~~-- 340 (592)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |+...| ..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc
Confidence 44567889999999999875554 33345556777888899999999999999999885 555544 4444544222
Q ss_pred ---CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 341 ---GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 341 ---g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
.+.+...++|+++...- |.......+.-.+.....+ ..+...+..+...|+| .+|+.|-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 24567778888886643 3333332222222221222 2455566666777754 3455666666655555555
Q ss_pred HHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 007695 417 RSNFDYMIRL----G----------HKPDD--RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGR 479 (592)
Q Consensus 417 ~~lf~~m~~~----g----------~~pd~--~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~ 479 (592)
..++...... + -.|.. .++.-+...|...|++++|+.+++..++.. |+ +..|..-.+.+-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 5666555432 1 12333 244556777889999999999999988853 55 6788889999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHhCC
Q 007695 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD------DF--ERIINGLLAGG 551 (592)
Q Consensus 480 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------~~--~~li~a~~~~g 551 (592)
.|++.+|...++........ |..+-+-.+..+.++|++++|.+++..+...+..|... .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988776 88888888999999999999999998887765433222 23 33468899999
Q ss_pred CHHHHHHHHHHHHH
Q 007695 552 FLQDAQRVHGLMEA 565 (592)
Q Consensus 552 ~~~~A~~l~~~m~~ 565 (592)
++..|++.|.....
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999887766553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.5e-07 Score=92.09 Aligned_cols=280 Identities=13% Similarity=0.019 Sum_probs=212.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007695 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367 (592)
Q Consensus 288 ~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 367 (592)
..-+......-..-+-..+++.+..++++.+.+.. +++...+..-|.++...|+..+-..+-.+|.+. .+-.+.+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 34456656666677778889999999999888764 667777777788888999988888888888876 3446788888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHh
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL--GH-KPDDRCTASMIAAYGK 444 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~--g~-~pd~~t~~~li~a~~~ 444 (592)
+.--|.-.|+..+|.+.|.+....+ +.-...|-.+...|+-.|..++|+..+...-+. |. .| ..| +---|.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LY--lgmey~~ 392 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLY--LGMEYMR 392 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHH--HHHHHHH
Confidence 8888888899999999999877554 333578888999999999999999888776652 33 22 222 3335778
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CC-C-CCHHHHHHHHHHHHHcCC
Q 007695 445 KNLLDKALNLLLELEKDGFEP-GPATYTVLVDWLGRLQLINEAEQLLGKISEL----GE-A-PPFKIQVSLCDMYARAGI 517 (592)
Q Consensus 445 ~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~-p~~~~~~~Li~~~~~~g~ 517 (592)
.++...|.++|.+... +.| |+..++-+.-.....+.+.+|..+|+..... +. . --..+++.|..+|.+.+.
T Consensus 393 t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred hccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 8999999999988655 444 4566666666666778889999988876521 11 1 134568888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579 (592)
Q Consensus 518 ~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~ 579 (592)
+++|+..+++.... .+.++.++.++.-.|...|+.+.|+..|.+.+ .+.||.++...++
T Consensus 471 ~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 471 YEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELL 529 (611)
T ss_pred HHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHH
Confidence 99999999988876 45578889999999999999999999998876 4688884444333
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-08 Score=95.50 Aligned_cols=234 Identities=11% Similarity=0.035 Sum_probs=199.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
+.|..+|.+.|.+.+|.+.++.-+.. .|-+.||..|-+.|.+..+...|+.++.+-...- +.|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 57889999999999999999988875 4678899999999999999999999999988764 56666667788889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 490 (592)
++.++|.++++...+... .+.....++...|...++++.|+.+|+++...|+ -++..|+.+.-+|.-.+++|-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999988533 3677778888899999999999999999999996 46788999999999999999999999
Q ss_pred HHHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 007695 491 GKISELGEAP--PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 491 ~~m~~~g~~p--~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~ 568 (592)
++....--.| -..+|-.|.......|++..|.+.|+.....+ .-....+|.|...-.+.|+.++|..+++...+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~-- 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV-- 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--
Confidence 9887654433 35678888888889999999999999887764 335677999988889999999999999988754
Q ss_pred CCCH
Q 007695 569 AASE 572 (592)
Q Consensus 569 ~pd~ 572 (592)
-|+.
T Consensus 459 ~P~m 462 (478)
T KOG1129|consen 459 MPDM 462 (478)
T ss_pred Cccc
Confidence 5554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-05 Score=79.55 Aligned_cols=319 Identities=13% Similarity=0.019 Sum_probs=227.6
Q ss_pred CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-
Q 007695 252 SFQTNVRDYSKLIDAHAKE--NCLEDAERILKKMNENG-IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK- 327 (592)
Q Consensus 252 ~~~p~~~~y~~Li~~~~~~--g~~~~A~~l~~~m~~~g-~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~- 327 (592)
...|+..+...-|.+++.. ++-..|.+++-.+.... ++-|+.....+..++...|+.++|...|++.... .|+.
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i 266 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNV 266 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhh
Confidence 3455555555556665553 44445555554444332 5557888899999999999999999999998854 3332
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
.......-.+.+.|+.+....+...+.... .-+...|..-........++..|+.+-.+..+.. +.++..|-.-...+
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL 344 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL 344 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence 223333445567889988888888887642 2344445555555666788899999988888765 56677777777889
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-HcCCHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV-DWLG-RLQLINE 485 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li-~~~~-~~g~~~~ 485 (592)
.+.|++++|.-.|+......+ -+..+|..++.+|...|.+.+|..+-+...+. ++-+..+.+.+. ..|. ....-++
T Consensus 345 ~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence 999999999999998877432 37889999999999999999998777665442 233445554442 2222 2233577
Q ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 486 AEQLLGKISELGEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 486 A~~l~~~m~~~g~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
|.++++...+. .|+ ....+.+...+...|..+.+..+++.... ..+|....+.|...+...+.+++|+..|....
T Consensus 423 AKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 423 AKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88888887764 344 35667788889999999999999998766 46788888999999999999999999998887
Q ss_pred HCCCCCCH-HHHHHHHhhh
Q 007695 565 AQGFAASE-RLKVALISSQ 582 (592)
Q Consensus 565 ~~g~~pd~-~~~~~l~~~~ 582 (592)
+ +.|+. .+...+..-.
T Consensus 499 r--~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 499 R--QDPKSKRTLRGLRLLE 515 (564)
T ss_pred h--cCccchHHHHHHHHHH
Confidence 5 46666 5555554443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-06 Score=88.72 Aligned_cols=298 Identities=16% Similarity=0.085 Sum_probs=203.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD-KKVYNSMIMAYV 338 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~a~~ 338 (592)
-....-|.+.|++++|++.|.+.+.. .|| +..|.....+|...|+|++..+--...++. .|+ +..+.--.+++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34455678888999999999988885 677 777888888888999988888777766654 343 234444455555
Q ss_pred HcCCchHHHH----------------------HHHH---------HHHCC--CCCCHHHHHHHHHHHHh---------C-
Q 007695 339 NAGQPKLGMS----------------------LVDM---------MITSG--IERSEEIYLALLRSFAQ---------C- 375 (592)
Q Consensus 339 ~~g~~~~A~~----------------------l~~~---------m~~~g--~~p~~~t~~~Ll~~~~~---------~- 375 (592)
..|++++|+. ++.. +.+.+ +-|+.....+....+-. .
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 5555554432 2211 11111 33444333333332211 0
Q ss_pred ---------------C---CHHHHHHHHHHHHHc---CCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 376 ---------------G---DVRGAGQITNIMRIE---EFQPT---------LESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 376 ---------------g---~~~~A~~~~~~m~~~---g~~~~---------~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+ .+..|...+.+-... ....+ ..+...-...+.-.|+.-.|..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 122222222211100 01111 22333333445668899999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007695 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505 (592)
Q Consensus 426 ~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 505 (592)
....++. .|--+...|...++.++-+..|....... +-|+.+|..-.+.+.-.+++++|..=|++.+..... +...|
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~ 431 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAY 431 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHH
Confidence 6554333 27777788999999999999999887753 334566776677777788999999999999987655 77888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
..+..+..+.+++.++...|++...+ ++-.+..|+.....+...++++.|.+.|+..++.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 88888888999999999999999887 6667899999999999999999999999998864
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-05 Score=83.50 Aligned_cols=304 Identities=9% Similarity=-0.096 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDIV-TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
..|..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|..++++..+.. +.|...++. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3455666666666777776666665544321 12221 12223345566788888888888877652 334444442 22
Q ss_pred HHHH----cCCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 336 AYVN----AGQPKLGMSLVDMMITSGIERS-EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 336 a~~~----~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
.+.. .+....+.+.+.. .....|+ ......+...+...|++++|...+++..+.. +.+...+..+...|...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 2222 3444444444443 1122233 3444556677788888888888888888775 55567778888888888
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCH
Q 007695 411 GDPDQARSNFDYMIRLGH-KPDD--RCTASMIAAYGKKNLLDKALNLLLELEKDGF-EPGPATY-T--VLVDWLGRLQLI 483 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~g~-~pd~--~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty-~--~li~~~~~~g~~ 483 (592)
|++++|...+++...... .|+. ..|..+...+...|++++|..+|++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 888888888888776432 2222 2345677778888888888888888754321 1222111 1 223333334433
Q ss_pred HHHHHH---HHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CC-----HHHHHHHHHHHHhCC
Q 007695 484 NEAEQL---LGKISELGE-APPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ---MG-----PDDFERIINGLLAGG 551 (592)
Q Consensus 484 ~~A~~l---~~~m~~~g~-~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~---~~-----~~~~~~li~a~~~~g 551 (592)
..+.++ ......... ............++...|+.+.|..+++.+...... -. ....-...-++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 333222 111111100 111222235667778888999999998887653221 00 111122233456889
Q ss_pred CHHHHHHHHHHHHHC
Q 007695 552 FLQDAQRVHGLMEAQ 566 (592)
Q Consensus 552 ~~~~A~~l~~~m~~~ 566 (592)
++++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-05 Score=79.30 Aligned_cols=352 Identities=13% Similarity=0.089 Sum_probs=230.1
Q ss_pred ccCCchhHHHHHHhhcCCCHh---hHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 007695 203 KEEDPSPLLAEWKELLQPSRI---DWINLLDRL-REQNTQLYFKVAELVLSEESFQTNV-RDYSKLIDAHAKENCLEDAE 277 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p~~~---t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~-~~y~~Li~~~~~~g~~~~A~ 277 (592)
..+++..|+.+|++++..|.. -|---+..= +......+..+...... .-|-+ ..|-.-+..=-..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt---~lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT---ILPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH---hcchHHHHHHHHHHHHHHhcccHHHH
Confidence 567888999999998765522 232222221 22333444444444332 22333 23445555556689999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-
Q 007695 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS- 356 (592)
Q Consensus 278 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~- 356 (592)
++|++-.+ ..|+...|++.|+.=.+.+.++.|..+|+...-. .|++.+|--....=.++|+...|..+|....+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 99999877 5899999999999999999999999999998864 799999999999999999999999999887763
Q ss_pred C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-------------------------------------------C
Q 007695 357 G-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-------------------------------------------E 392 (592)
Q Consensus 357 g-~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~-------------------------------------------g 392 (592)
| -..+...|++....=.++..++.|.-+|+-.... .
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 1112233444333333344444444444333211 0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHH----HH----HHHhcCCHHHHHHHHHHHHHCC
Q 007695 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR--CTASM----IA----AYGKKNLLDKALNLLLELEKDG 462 (592)
Q Consensus 393 ~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~--t~~~l----i~----a~~~~g~~~~A~~l~~~m~~~g 462 (592)
-+-|-.+|--.+..--..|+.+...++|+..... ++|-.. .|..- |+ .=....+++.+.++|+..++.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 1345556666666666778888888888887774 333211 11111 11 113457778888888777762
Q ss_pred CCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 463 FEPGPATYTVLVDWL----GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538 (592)
Q Consensus 463 ~~p~~~ty~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 538 (592)
++....||.-+=-.| .++.++..|.+++...+ |.-|-..++...|..=...++++....+++...+-+ +-+-.
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhH
Confidence 233345555433333 45677888888887766 445667778888888888888888888888887753 22455
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+|......=-..|+.+.|..+|.-.++.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 6777776667788888888888877765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.4e-07 Score=94.03 Aligned_cols=236 Identities=15% Similarity=0.087 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCC
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITS-----G-IERSEEI-YLALLRSFAQCGDVRGAGQITNIMRIE-----E-FQP 395 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~t-~~~Ll~~~~~~g~~~~A~~~~~~m~~~-----g-~~~ 395 (592)
+...+...|...|+++.|+.+++..++. | ..|...+ .+.+...|...+++++|..+|+++... | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333455555555555555555444332 1 1122222 223556677777777777777776542 2 111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC
Q 007695 396 -TLESCTLLVEAYGQAGDPDQARSNFDYMIR-----LGHK-PDD-RCTASMIAAYGKKNLLDKALNLLLELEKD---GFE 464 (592)
Q Consensus 396 -~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~-----~g~~-pd~-~t~~~li~a~~~~g~~~~A~~l~~~m~~~---g~~ 464 (592)
-..+++.|..+|.+.|++++|...++.... .|.. |.. ..++.+...|+..+.+++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 135566667778888887777776665433 1222 222 23566777888889999999888875442 122
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---
Q 007695 465 PG----PATYTVLVDWLGRLQLINEAEQLLGKISEL----GEA--P-PFKIQVSLCDMYARAGIEKKALQALGFLEA--- 530 (592)
Q Consensus 465 p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--- 530 (592)
++ ..+++.|...|.+.|++++|..++++++.. +.. + ....++.|...|...+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 468899999999999999999999987632 121 1 235677888899999999999999876433
Q ss_pred -cCC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 531 -KKE-QMG-PDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 531 -~~~-~~~-~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
.|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 221 222 3468889999999999999999987765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-06 Score=88.06 Aligned_cols=118 Identities=9% Similarity=-0.021 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 007695 306 GNLDRAKEAFESLRSHG-FQPD--KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~g-~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~ 382 (592)
+..+.++.-+.++.... ..|+ ...|..+...|...|+.++|...|++..+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 34445555555554321 1111 23344555555555555555555555555432 24455555555555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 383 ~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
..|+...+.. +-+..+|..+..++...|++++|...|+...+
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555443 22344555555555555555555555555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.1e-06 Score=86.06 Aligned_cols=284 Identities=13% Similarity=-0.006 Sum_probs=217.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
..++.......+-|...+++.+..++++.+.+. .++....+..=|.++...|+..+-..+=.+|.+.- +....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 445555556666777889999999999998876 35566677777788899998888777777777653 5567899999
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~ 413 (592)
.--|.-.|+..+|.+.|.+....+.. =...|......|+-.+..++|...+...-+.- +-...-+--+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 99999999999999999988654322 24578888999999999999999888776542 11222223345567888999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC----CCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD--GF----EPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 414 ~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~--g~----~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
+.|...|.+.....+ -|...++-+--..-+.+.+.+|..+|+..+.. .+ ..-..+++.|..+|.+.+.+++|.
T Consensus 397 kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999998887433 36667777766667788999999999887632 11 123467889999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545 (592)
Q Consensus 488 ~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 545 (592)
..+++......+ +..++.++.-.|...|+++.|...|.+.... .|+-.+...++.
T Consensus 476 ~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 476 DYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHH
Confidence 999999887665 8999999999999999999999999988764 454444444444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-06 Score=92.21 Aligned_cols=239 Identities=16% Similarity=0.142 Sum_probs=173.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCCHH-HHHHHHHHHHHcCCchHHHHHHHHHHHC-----C-
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-----G-FQPDKK-VYNSMIMAYVNAGQPKLGMSLVDMMITS-----G- 357 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g-~~pd~~-t~~~li~a~~~~g~~~~A~~l~~~m~~~-----g- 357 (592)
-..+...|...|...|+++.|..++....+. | ..|.+. ..+.+...|...+++.+|..+|+++... |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456666889999999999999999887653 2 123333 3344677888899999999999888652 2
Q ss_pred -CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Q 007695 358 -IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-----EF-QPTL-ESCTLLVEAYGQAGDPDQARSNFDYMIRL--- 426 (592)
Q Consensus 358 -~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~Li~~~~~~g~~~~A~~lf~~m~~~--- 426 (592)
.+.-..+++.|..+|.+.|++++|...++...+. +. .+.+ ..++.++..|+..+.+++|..++....+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1122456777888899999999888877766432 11 2222 34567778888999999999998866542
Q ss_pred CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-
Q 007695 427 GHKPDD----RCTASMIAAYGKKNLLDKALNLLLELEKD----GF--EP-GPATYTVLVDWLGRLQLINEAEQLLGKIS- 494 (592)
Q Consensus 427 g~~pd~----~t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~--~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~- 494 (592)
-+.++. .+++.+-..|.+.|++++|..+|+..+.. +- .+ ....++.+...|.+.+++.+|.++|.+..
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 222332 47888999999999999999999987543 11 22 24667888889999999999999888754
Q ss_pred ---hcCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 495 ---ELGEA-PP-FKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 495 ---~~g~~-p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
..|.. |+ ..+|..|...|.+.|+++.|.++.+.+.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23332 23 4688999999999999999999987665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-05 Score=79.40 Aligned_cols=287 Identities=13% Similarity=0.042 Sum_probs=209.8
Q ss_pred hCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHHcCCHHHHHH
Q 007695 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVT-STVLVHMYSKAGNLDRAKE 313 (592)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~-~~~Li~~~~~~g~~~~A~~ 313 (592)
++...+...+........++.|+.....+...+...|+.++|...|++.... .|+..+ .....-.+.+.|+++....
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHH
Confidence 3333344444444455667889999999999999999999999999998764 344332 2222233457788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 007695 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393 (592)
Q Consensus 314 ~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~ 393 (592)
+...+.... ..+...|-.-.......+++..|+.+.++.++.+.. +...|..-.+.+...++.++|.-.|+......
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 877776432 234455555556666788999999999998875422 55566666678889999999999999988764
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHH
Q 007695 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI-AAYGKK-NLLDKALNLLLELEKDGFEPG-PATY 470 (592)
Q Consensus 394 ~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li-~a~~~~-g~~~~A~~l~~~m~~~g~~p~-~~ty 470 (592)
+-+..+|.-|+.+|...|...+|...-+..... ..-+..+.+.+- ..|.-. .--++|..+++.-.+ +.|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHH
Confidence 567899999999999999999998777665542 122445555431 222222 234788888877554 4565 3566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 471 TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 471 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
+.+...|...|...++..++++... ..||....+.|.+.+...+.+.+|+..|......
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7777889999999999999998876 4579999999999999999999999998877664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.1e-05 Score=78.36 Aligned_cols=272 Identities=14% Similarity=0.149 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc----------------------hHHHHHHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP----------------------KLGMSLVD 351 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~----------------------~~A~~l~~ 351 (592)
.|++|.+.|.+.|.+++|..+|++.... ..++.-|+.+.++|++...- +-....|+
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 4788889999999999999999887754 34555566666666543221 12223333
Q ss_pred HHHHCCC-----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCHH
Q 007695 352 MMITSGI-----------ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP------TLESCTLLVEAYGQAGDPD 414 (592)
Q Consensus 352 ~m~~~g~-----------~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~------~~~~~~~Li~~~~~~g~~~ 414 (592)
.+.+... +.+..+|..-+. +..|+..+....|.+..+.- .| -...|..+.+.|-..|+++
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 3322210 011122222222 22355666666777766541 22 2467888999999999999
Q ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------CCCC-------CHHHHHHHH
Q 007695 415 QARSNFDYMIRLGHKPD---DRCTASMIAAYGKKNLLDKALNLLLELEKD----------GFEP-------GPATYTVLV 474 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd---~~t~~~li~a~~~~g~~~~A~~l~~~m~~~----------g~~p-------~~~ty~~li 474 (592)
.|..+|++..+...+-- ..+|..-...=.+..+++.|+++.+..... |..| +...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999887433211 123333333344567788888888765421 1111 123456666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---C
Q 007695 475 DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP-DDFERIINGLLA---G 550 (592)
Q Consensus 475 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~a~~~---~ 550 (592)
+.....|-++....+|+++.+..+. ++.+.......+..+.-++++.+++++-...-..|+. +.|+..+.-+.+ .
T Consensus 485 DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 7777788999999999999988776 5555555555566777788898888876655334443 467777665543 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH
Q 007695 551 GFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 551 g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
-..+.|..+|++.++ |++|..
T Consensus 564 ~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 564 TKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred CCHHHHHHHHHHHHh-cCCHHH
Confidence 467899999999988 888877
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.7e-06 Score=78.01 Aligned_cols=205 Identities=17% Similarity=0.098 Sum_probs=162.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
...|.-.|.+.|++..|.+-+++..++... +..+|..+...|.+.|+.+.|.+.|++..+.. +.+-.+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 556677889999999999999999887433 56688888899999999999999999988764 5567788889999999
Q ss_pred cCCchHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 340 AGQPKLGMSLVDMMITSG-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
.|++++|...|++..... ..--..||..+.-+..+.|+.+.|...|++..... +-...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 999999999999888754 22245678888888888999999999999888775 3345667778888888899999998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007695 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATY 470 (592)
Q Consensus 419 lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 470 (592)
.++.....+. ++..+.-..|..-...|+.+.+-++=..+.+. -|...-|
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 8888887665 77777777788878888888887777666553 3444433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.1e-06 Score=87.17 Aligned_cols=269 Identities=13% Similarity=0.095 Sum_probs=182.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhCCCCCCHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA-----GNLDRAKEAFESLRSHGFQPDKK 328 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~ 328 (592)
......+......+.+.|+.++|..+|..+.+++.. |..-|..+..+..-. .+.+....+|+++... -|...
T Consensus 35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~ 111 (517)
T PF12569_consen 35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSD 111 (517)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--Ccccc
Confidence 334445667778889999999999999999987532 444455555555222 2567778888888765 34433
Q ss_pred HHHHHHHHHHHcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C----------C
Q 007695 329 VYNSMIMAYVNAGQP-KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE----E----------F 393 (592)
Q Consensus 329 t~~~li~a~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~----g----------~ 393 (592)
+...+.-.+.....+ ..+..++..+...|++ .+|+.|-..|.......-..+++...... + -
T Consensus 112 ~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~ 188 (517)
T PF12569_consen 112 APRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKE 188 (517)
T ss_pred chhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccC
Confidence 333333222222222 2455667777788866 46777777776555555555555555432 1 1
Q ss_pred CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007695 394 QPTLE--SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471 (592)
Q Consensus 394 ~~~~~--~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 471 (592)
+|+.. ++.-+...|...|++++|+.+.++.+.+.+. ....|..-...|-+.|++.+|...++...... .-|...-+
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNs 266 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINS 266 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHH
Confidence 34443 4456677788999999999999998886432 36677778888999999999999999887654 23556666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKI--------QVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 472 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~--------~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
-.+..+.++|++++|.+++....+.+..|.... ......+|.+.|++..|++-|..+.+
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777888899999999999998887665433222 24456788999999999888766544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.2e-06 Score=83.86 Aligned_cols=218 Identities=14% Similarity=0.040 Sum_probs=137.0
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHH
Q 007695 271 NCLEDAERILKKMNENG-IVPD--IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~g-~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 347 (592)
+..+.++.-+.++.... ..|+ ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34566666666666432 1222 3457777778888888888888888887764 446778888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 427 (592)
..|++..+.... +..++..+..++...|++++|.+.|+...+.. |+..........+...++.++|...|.+.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888888875422 46677778888888888888888888887764 332222222223445677888888886654321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD---GF--EP-GPATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 428 ~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~---g~--~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
.|+...+ .+ .+...|+...+ ..+..+.+. .. .| ....|..+...+.+.|++++|...|++....+
T Consensus 196 -~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 -DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2332222 22 22334554443 244444322 11 11 22456667777777777777777777776654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.3e-06 Score=76.07 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=82.6
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 007695 332 SMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411 (592)
Q Consensus 332 ~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g 411 (592)
.|.-+|.+.|+...|..-+++.++.+.. +..++..+...|.+.|+.+.|.+.|+...... +-+-.+.|.....+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 3444444455555555555544444311 34444444444455555555555554444433 233344444444444445
Q ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 412 DPDQARSNFDYMIRL-GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 412 ~~~~A~~lf~~m~~~-g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 490 (592)
.+++|...|++.... ...-...+|..+.-+..+.|+.+.|...|++-.+.. +-...+...+.+...+.|++-.|..++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHH
Confidence 555555544444442 011112334444444444444444444444444321 111233334444444444444444444
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 491 ~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
+.....+. ++..+.-..|..-.+.|+.+.+.+.=
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~ 230 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQ 230 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 44443333 34444444444444444444444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.2e-05 Score=77.62 Aligned_cols=262 Identities=13% Similarity=0.002 Sum_probs=161.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK----AGNLDRAKEAFESLRSHGFQPD-KKVYNSMIMAYV 338 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~a~~ 338 (592)
...+...|++++|.+++++..+.. +.|...+.. ...+.. .+....+.+.+... ....|+ ...+..+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence 345567889999999999887763 224444442 222222 34555555555541 112333 344456667888
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC--HHHHHHHHHHHHHcCCHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF-QPT--LESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~--~~~~~~Li~~~~~~g~~~~ 415 (592)
..|++++|...+++..+.. +.+...+..+...|...|++++|...+.......- .++ ...|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 8999999999999998864 33567788888899999999999999988876531 123 2345678888999999999
Q ss_pred HHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 416 ARSNFDYMIRLGH-KPDDRCT-A--SMIAAYGKKNLLDKALNL--LLELEKDGF--EPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 416 A~~lf~~m~~~g~-~pd~~t~-~--~li~a~~~~g~~~~A~~l--~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
|..+|++...... .+..... + .++.-+...|....+.++ +........ ......-.....++...|+.+.|.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 9999998864322 1112111 1 233334444543333332 211111111 111222235667778889999999
Q ss_pred HHHHHHHhcCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 488 QLLGKISELGEA--------PPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 488 ~l~~~m~~~g~~--------p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.++..+...... ..........-++...|+.+.|.+.+.....
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999988653221 0122333344456789999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00034 Score=73.82 Aligned_cols=220 Identities=11% Similarity=0.093 Sum_probs=129.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL-ESCTLLVEAYG 408 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~Li~~~~ 408 (592)
|...++.--..|-++....+|+.+++..+. ++.......-.+-...-++++.++|+.-...--.|++ ..|+..+.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 333333333445555555555555554432 2222222222233344456666666554443334443 45666655554
Q ss_pred H---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcC
Q 007695 409 Q---AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY--GKKNLLDKALNLLLELEKDGFEPG--PATYTVLVDWLGRLQ 481 (592)
Q Consensus 409 ~---~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~--~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g 481 (592)
+ ...++.|..+|++..+ |++|...-+--++-+- -+.|....|+.+|++... ++++. ...|++.|.-....=
T Consensus 559 ~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHh
Confidence 4 3468999999999988 6655443322222211 234888889999988643 44444 367888887666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHH
Q 007695 482 LINEAEQLLGKISELGEAPPFK---IQVSLCDMYARAGIEKKALQALGFLEAK-KEQMGPDDFERIINGLLAGGFLQ 554 (592)
Q Consensus 482 ~~~~A~~l~~~m~~~g~~p~~~---~~~~Li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~a~~~~g~~~ 554 (592)
-+.....+|++.++. -|+.. ...-..+.=.+.|.++.|..++..-.+. +...+...|.+-=.-=.++|+-+
T Consensus 637 Gv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 637 GVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred CCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 666777888888775 23433 3334455667899999999999876653 23445666877777778899843
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00046 Score=67.90 Aligned_cols=255 Identities=16% Similarity=0.069 Sum_probs=114.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV-LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~-Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
-+|.+....+-.+.+|.++|.+....+ |+-...|. +.-+|.+..-++-+.+++.-.++. ++.++...|.......+
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFR 231 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhh
Confidence 344444444556788888888877652 44444443 334566667777777777766654 23344555555444433
Q ss_pred cCCchHHHHHHHHHHHCCC--------------------------CC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMITSGI--------------------------ER-----SEEIYLALLRSFAQCGDVRGAGQITNIM 388 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~--------------------------~p-----~~~t~~~Ll~~~~~~g~~~~A~~~~~~m 388 (592)
.=+-.-|..-.+.+.+.+- -| -+..-..|+--|.+.+++.+|..+.+++
T Consensus 232 l~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 232 LINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred hhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc
Confidence 2111112221222211110 00 0112223444567788888888777665
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 389 RIEEFQPTLESCTLLVEAYGQAG-------DPDQARSNFDYMIRLGHKPDDRC-TASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 389 ~~~g~~~~~~~~~~Li~~~~~~g-------~~~~A~~lf~~m~~~g~~pd~~t-~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
. +.+..-|-.-.-.++..| ++.-|...|+-.-.++..-|++. -.++.+++.-..++++.+.++..+..
T Consensus 312 ~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s 387 (557)
T KOG3785|consen 312 D----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES 387 (557)
T ss_pred C----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 223332222222222222 34555555554444433222211 12233333333444444444444433
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHcCCHHHHHHH
Q 007695 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ-VSLCDMYARAGIEKKALQA 524 (592)
Q Consensus 461 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~-~~Li~~~~~~g~~~~A~~~ 524 (592)
-= .-|......+.++++..|.+.+|+++|-.+....++ |..+| ..|..+|.+++..+.|..+
T Consensus 388 YF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 388 YF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred Hh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence 21 112222223444555555555555555444433333 22232 2334445555555555443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00047 Score=81.02 Aligned_cols=307 Identities=11% Similarity=-0.051 Sum_probs=199.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----H
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGI------VPD--IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK----K 328 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~------~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~ 328 (592)
......+...|++++|..++......-- .+. ......+...+...|++++|...++.....--..+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3445556778999999999988754310 111 112223345566889999999999987753111121 3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC--C-C
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITS----GI-ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE----EFQ--P-T 396 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~ 396 (592)
+.+.+...+...|++++|...+.+.... |. .....++..+...+...|+++.|...+.+.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4556667778899999999999887652 11 111234566677888999999999988876542 211 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHH--
Q 007695 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRL--GHKPD--DRCTASMIAAYGKKNLLDKALNLLLELEKD--GFEPGPA-- 468 (592)
Q Consensus 397 ~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~--g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~--g~~p~~~-- 468 (592)
...+..+...+...|++++|...+.+.... ...+. ..++..+...+...|+.+.|...+...... .......
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 334556667788889999999999887552 11122 334444566778899999999998887542 1111111
Q ss_pred H--HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HH
Q 007695 469 T--YTVLVDWLGRLQLINEAEQLLGKISELGEAPP---FKIQVSLCDMYARAGIEKKALQALGFLEAK----KEQMG-PD 538 (592)
Q Consensus 469 t--y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~ 538 (592)
. ....+..+...|+.+.|..++........... ...+..+..++...|+.++|...+++.... +.... ..
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1 11122445568899999999877654221111 112456777888999999999999877652 22221 23
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
+...+..++...|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 45566788889999999999999887653
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0012 Score=71.39 Aligned_cols=373 Identities=13% Similarity=0.062 Sum_probs=232.6
Q ss_pred chHHHHHHHHccc-ccCCchhHHHHHHhhc---CCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 007695 190 KCKLITDKILSLE-KEEDPSPLLAEWKELL---QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLI 264 (592)
Q Consensus 190 ~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~---~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li 264 (592)
+...++..+.-.. ++|++..+-+.|++.. -.....|+.+-..+ +.+....++.+.+..+....-++++..+-..-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3444555444333 8888888888888752 23445566666555 44445556666665544333234444454444
Q ss_pred HHHHH-cCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhCCCCCCHH
Q 007695 265 DAHAK-ENCLEDAERILKKMNEN--GI--VPDIVTSTVLVHMYSKA-----------GNLDRAKEAFESLRSHGFQPDKK 328 (592)
Q Consensus 265 ~~~~~-~g~~~~A~~l~~~m~~~--g~--~pd~~~~~~Li~~~~~~-----------g~~~~A~~~~~~m~~~g~~pd~~ 328 (592)
..|.+ .+.+++++.+-.+.... +. ......|..+.-+|... ....++.+.+++..+.+ +-|..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCch
Confidence 55554 46667766666665541 11 11334455555555432 12356778888887654 33444
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CC--------------
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE-EF-------------- 393 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~-g~-------------- 393 (592)
+...+.--|+..++.+.|.+..++..+.+-.-+...|..|.-.+...+++.+|+.+.+..... |.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 444445556678899999999999998765668889999999999999999999988876543 21
Q ss_pred ----CCCHHHHHHHHHHHHH---------cC--------------CHHHHHHHHHHH--------HHcC-----------
Q 007695 394 ----QPTLESCTLLVEAYGQ---------AG--------------DPDQARSNFDYM--------IRLG----------- 427 (592)
Q Consensus 394 ----~~~~~~~~~Li~~~~~---------~g--------------~~~~A~~lf~~m--------~~~g----------- 427 (592)
..-..|+..++..+-. .| +..+|......+ ...|
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 0001222222222210 00 111111111000 0001
Q ss_pred CCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 007695 428 HKPDD------RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501 (592)
Q Consensus 428 ~~pd~------~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 501 (592)
..|+. ..|......+.+.+..++|...+.+..+. .......|......+...|...+|.+.|......++. +
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-h 717 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-H 717 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-C
Confidence 01111 12344555667777778887666665442 2334456666667778889999999999988876555 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 502 FKIQVSLCDMYARAGIEKKALQ--ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 502 ~~~~~~Li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+...+++..++...|+..-|.. ++..+.+. .+.++..|..+...+-+.|+.+.|.+.|....+.
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~-dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRL-DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 7788999999999998888887 88888887 4568999999999999999999999999987654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-06 Score=86.64 Aligned_cols=247 Identities=15% Similarity=0.129 Sum_probs=127.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHH
Q 007695 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348 (592)
Q Consensus 269 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~ 348 (592)
=.|++..++.-.+ ........+......+.++|...|+++.++ .++.... .|.......+...+...++-+.++.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3466666654444 222111112334445666667777655433 3333332 5555555444444332233333333
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 349 LVDMMITSGIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427 (592)
Q Consensus 349 l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 427 (592)
-+++.......+ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~- 160 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI- 160 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 333332222221 2222223334455567777777766542 35566666777777777777777777777653
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHH
Q 007695 428 HKPDDRCTASMIAAYGK----KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFK 503 (592)
Q Consensus 428 ~~pd~~t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 503 (592)
..| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..+....|++++|..++.+....+.. +..
T Consensus 161 -~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d 236 (290)
T PF04733_consen 161 -DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPD 236 (290)
T ss_dssp -SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHH
T ss_pred -CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHH
Confidence 223 333334444332 23567777777776443 4566677777777777777777777777776655443 556
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 007695 504 IQVSLCDMYARAGIE-KKALQALGFLEAK 531 (592)
Q Consensus 504 ~~~~Li~~~~~~g~~-~~A~~~~~~m~~~ 531 (592)
+...++.+....|+. +.+.+.+.++...
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 666666666666666 5566666666553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00081 Score=66.00 Aligned_cols=342 Identities=12% Similarity=0.090 Sum_probs=212.1
Q ss_pred cccCCchhHHHHHHhhcCCCHhhHHHHHHHH----HhhCHHHHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHHcCCHHHH
Q 007695 202 EKEEDPSPLLAEWKELLQPSRIDWINLLDRL----REQNTQLYFKVAELVLSEESFQTNVRDYS-KLIDAHAKENCLEDA 276 (592)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~y~-~Li~~~~~~g~~~~A 276 (592)
.-.|++.+|+..|..+++-|+..|.++.... +-+...-++.-+..++. .+||...-. .-...+.+.|.++.|
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~Gele~A 125 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQGELEQA 125 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcccHHHH
Confidence 3678889999999988888888888777642 33443334444444443 467654321 123467889999999
Q ss_pred HHHHHHHHHCCCCCC----HHH----------HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 277 ERILKKMNENGIVPD----IVT----------STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 277 ~~l~~~m~~~g~~pd----~~~----------~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~ 342 (592)
..=|+.+.++...-+ ... ....+..+...|+...|......+++.. +.|...|..-..+|...|.
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCc
Confidence 999999988743211 111 1233445566788899999988888764 6688888888899999999
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------HHHHHH
Q 007695 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL-------------VEAYGQ 409 (592)
Q Consensus 343 ~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L-------------i~~~~~ 409 (592)
+..|+.=++..-+.. .-+..++--+-..+...|+.+.++...++..+. .||...+... +.....
T Consensus 205 ~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998887777765543 336677777788888889988888888877765 4554332111 122334
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 007695 410 AGDPDQARSNFDYMIRLGHKPDDRCTA---SMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINE 485 (592)
Q Consensus 410 ~g~~~~A~~lf~~m~~~g~~pd~~t~~---~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~ 485 (592)
.++|-++.+-.+...+..+....+.|+ .+-.+|...+++.+|++.-.+.+. +.|+ +.++.--..+|.-...++.
T Consensus 282 ~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred hhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHH
Confidence 556666666666666543332233333 334455566777777777766655 3344 6666666667777777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 486 A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
|..-|+...+.+.. |... +.| .+.|.++.++...+ | |.. |-+--+.-.-.+..+.|++|-.
T Consensus 360 AI~dye~A~e~n~s-n~~~---------reG-le~Akrlkkqs~kR----D---YYK-ILGVkRnAsKqEI~KAYRKlAq 420 (504)
T KOG0624|consen 360 AIHDYEKALELNES-NTRA---------REG-LERAKRLKKQSGKR----D---YYK-ILGVKRNASKQEITKAYRKLAQ 420 (504)
T ss_pred HHHHHHHHHhcCcc-cHHH---------HHH-HHHHHHHHHHhccc----h---HHH-HhhhcccccHHHHHHHHHHHHH
Confidence 77777777665432 2111 111 23444443333222 1 222 2334455566777777877765
Q ss_pred CCCCCCH
Q 007695 566 QGFAASE 572 (592)
Q Consensus 566 ~g~~pd~ 572 (592)
. ..||.
T Consensus 421 k-WHPDN 426 (504)
T KOG0624|consen 421 K-WHPDN 426 (504)
T ss_pred h-cCCcc
Confidence 4 66654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0014 Score=69.44 Aligned_cols=245 Identities=11% Similarity=0.030 Sum_probs=158.9
Q ss_pred CcchHHHHHHHHcccccCCchhHHHHHHhhcCCCHhhHHH-HHHHH---HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 007695 188 TGKCKLITDKILSLEKEEDPSPLLAEWKELLQPSRIDWIN-LLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKL 263 (592)
Q Consensus 188 ~~~~~~~~~~l~~~~~~g~~~~A~~~~~~~~~p~~~t~~~-lL~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~L 263 (592)
+++...+...++..|..+++...++..+.+++....+-.+ .+.|+ +.++.+++...++.-+. +-..+.+.|..+
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~ 81 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVL 81 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHH
Confidence 3444445555666666677777777776664322222111 13333 45666777776665543 224556678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~ 343 (592)
.-.+-...++++|.+.|......+.. |...|.-|.-.-++.++++.....-..+.+.. +-....|..+..++.-.|+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999886533 77788877777788899999888888887652 33455788899999999999
Q ss_pred hHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 344 KLGMSLVDMMITSG-IERSEEIYLALL------RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 344 ~~A~~l~~~m~~~g-~~p~~~t~~~Ll------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
..|..++++..+.. -.|+...|.... ......|..+.|.+.+......- .-....-..-...+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999999998764 356666665333 23445666677766665544321 11122223445566777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH
Q 007695 417 RSNFDYMIRLGHKPDDRCTASMI 439 (592)
Q Consensus 417 ~~lf~~m~~~g~~pd~~t~~~li 439 (592)
..++..+... .||..-|...+
T Consensus 239 ~~~y~~Ll~r--nPdn~~Yy~~l 259 (700)
T KOG1156|consen 239 VKVYRRLLER--NPDNLDYYEGL 259 (700)
T ss_pred HHHHHHHHhh--CchhHHHHHHH
Confidence 7777777664 35555554433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-05 Score=75.85 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=99.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS-MIMAYV 338 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-li~a~~ 338 (592)
+.+++..+.+..++..|.+++..-.++..+ +....+.|..+|-...++..|-..|+++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 345555556666666666666665554221 5555666666666666666666666666543 344333332 223344
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRS--FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
+.+.+..|+.+...|.+. ++...-..-+.+ ....+++..+..++++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 556666666666666432 111111111111 233455555555555554322 333334444445566666666
Q ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007695 417 RSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG 462 (592)
Q Consensus 417 ~~lf~~m~~-~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g 462 (592)
.+-|+...+ .|.. ....||..+ +..+.|+++.|+++..+++++|
T Consensus 164 vqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhh
Confidence 666666555 3444 345555443 3334556666666666665554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.5e-07 Score=59.96 Aligned_cols=32 Identities=44% Similarity=0.719 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318 (592)
Q Consensus 287 g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m 318 (592)
|+.||..|||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.5e-06 Score=82.29 Aligned_cols=255 Identities=15% Similarity=0.030 Sum_probs=169.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 007695 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379 (592)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 379 (592)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.++ .++... -.|.......+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 34445688888886665 332211223445667888999999877554 333333 3666666666655554434555
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 380 GAGQITNIMRIEEFQP-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 380 ~A~~~~~~m~~~g~~~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
.+..-+.+........ +..........+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554443333232 3333333445677789999999988653 36777888899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 007695 459 EKDGFEPGPATYTVLVDWLGR----LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534 (592)
Q Consensus 459 ~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (592)
.+. ..| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..++...|++++|..++.+....+ +
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 864 334 445555555543 34689999999998765 56789999999999999999999999999987663 4
Q ss_pred CCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCH
Q 007695 535 MGPDDFERIINGLLAGGFL-QDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 535 ~~~~~~~~li~a~~~~g~~-~~A~~l~~~m~~~g~~pd~ 572 (592)
-++++...++.+....|+. +.+.+++.+++.. .|+.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 4677887788888888887 6677888888764 5655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0015 Score=69.25 Aligned_cols=128 Identities=17% Similarity=0.089 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 434 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
|+-.++..|-+.|+++.|..+++....+ .|+ ...|..-.+.+...|++++|..++.+..+... +|...-.--..-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHH
Confidence 3445677888899999999999887664 455 35666677888999999999999999887653 3666655667777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC--CHH----HHHHH--HHHHHhCCCHHHHHHHHHHHH
Q 007695 513 ARAGIEKKALQALGFLEAKKEQM--GPD----DFERI--INGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~~--~~~----~~~~l--i~a~~~~g~~~~A~~l~~~m~ 564 (592)
.+..+.++|.++.......|... +-. .|..+ ..+|.+.|++-.|++-|..+.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 78899999999888777655311 100 23333 467788888888877665544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00028 Score=73.22 Aligned_cols=368 Identities=13% Similarity=0.007 Sum_probs=235.0
Q ss_pred ccCCchhHHHHHHhh--cCC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 007695 203 KEEDPSPLLAEWKEL--LQP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTN-VRDYSKLIDAHAKENCLEDAE 277 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~--~~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~-~~~y~~Li~~~~~~g~~~~A~ 277 (592)
..|+++.|+..|-+. +.| |.+-|+--..++ ..+.++.+.+-..... ...|+ ...|+-+..++.-.|++++|+
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 789999999999876 333 455565555566 4556666666555443 24454 346999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH------HHHHhC---CCCCCHHHHHHHHHHHHHc-------C
Q 007695 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAF------ESLRSH---GFQPDKKVYNSMIMAYVNA-------G 341 (592)
Q Consensus 278 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~------~~m~~~---g~~pd~~t~~~li~a~~~~-------g 341 (592)
.-|..-.+.. +-|...++-|..++.... .+.+.| ..+... ........|..++..+-+. .
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999987763 236677777887772211 111111 111100 0000112333333332111 0
Q ss_pred CchHHHHHHHHHHH--------CC-------CCC------------C----------HHHHHHHHHHHHhCCCHHHHHHH
Q 007695 342 QPKLGMSLVDMMIT--------SG-------IER------------S----------EEIYLALLRSFAQCGDVRGAGQI 384 (592)
Q Consensus 342 ~~~~A~~l~~~m~~--------~g-------~~p------------~----------~~t~~~Ll~~~~~~g~~~~A~~~ 384 (592)
+.+........+.. .+ ..| | ..-...+.++..+..+++.+.+.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 11111111111110 00 111 0 11245677778888888889988
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 007695 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR-------CTASMIAAYGKKNLLDKALNLLLE 457 (592)
Q Consensus 385 ~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~-------t~~~li~a~~~~g~~~~A~~l~~~ 457 (592)
+....... .+..-++....+|...|.+..+...-+...+.|-. ... .+..+-.+|.+.++++.|+.+|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88887764 56666777888899988888877777665554322 111 222334467777888899988887
Q ss_pred HHHCCCCCCHHH-------------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 458 LEKDGFEPGPAT-------------------------YTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 458 m~~~g~~p~~~t-------------------------y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
.......|+..+ ...-...+.+.|++..|...|.++++.... |...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHH
Confidence 655433333221 111234566789999999999999998755 889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHhhhhh
Q 007695 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVALISSQTF 584 (592)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~l~~~~~~ 584 (592)
.+.|.+..|++=.+...+. .+..+..|..=..++....+++.|++.|++.++. .|+. .+...+..|...
T Consensus 403 ~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHH
Confidence 9999999999988887776 3334556666677777778999999999998876 4777 788888888764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00033 Score=71.02 Aligned_cols=146 Identities=5% Similarity=-0.036 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
+..+-..+...+..++|+.+++++.+.... +..+|+.--.++...| ++++++..++++.+.. +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 444445555566777777777777764322 3445555545555555 4667777777766553 334455665555555
Q ss_pred HcCCc--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 339 NAGQP--KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 339 ~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
+.|.. ++++.+++.+++.+.+ |..+|+....++.+.|+++++++.++++.+.+ +.|..+|+.....+.+
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITR 188 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHh
Confidence 55542 4556666666655433 55666666666666666666666666666555 3445555555444443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.0012 Score=64.84 Aligned_cols=300 Identities=14% Similarity=0.078 Sum_probs=182.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-H
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL---VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY-N 331 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~-~ 331 (592)
++.-.--+...+..+|++..|+.-|...++- |+..|.++ ...|...|+..-|+.=|...++. +||-..- -
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3344455566666777777777777777664 33334333 34666667766777767666654 5663221 1
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHCCCCC--CHHH------------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 007695 332 SMIMAYVNAGQPKLGMSLVDMMITSGIER--SEEI------------YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL 397 (592)
Q Consensus 332 ~li~a~~~~g~~~~A~~l~~~m~~~g~~p--~~~t------------~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 397 (592)
.-...+.+.|.++.|..=|+..++....- +... ....+..+...|+...|......+.+.. +-|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 22344567777777777777776653211 1111 1233444556777778888777777664 5567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHH-
Q 007695 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT----YTV- 472 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t----y~~- 472 (592)
..|..-..+|...|.+..|+.=++..-+... -++.++--+-..+...|+.+.++...++.++ +.||... |-.
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHH
Confidence 7777777888888888887766665555322 2444555566666777777777777777665 3455321 111
Q ss_pred --HH------HHHHHcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 473 --LV------DWLGRLQLINEAEQLLGKISELGEAPP---FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE 541 (592)
Q Consensus 473 --li------~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 541 (592)
+. ......+++.++..-.+...+...... ...+..+..+|...|++.+|++...++... .+-|..++-
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHH
Confidence 11 122344666666666666665543311 234455667777788888888888877664 223466666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 542 RIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 542 ~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
--..+|.-...++.|+.-|+...+.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6677888888888888888877654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00045 Score=70.05 Aligned_cols=132 Identities=8% Similarity=-0.001 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--HHHH
Q 007695 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN-CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL--DRAK 312 (592)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~--~~A~ 312 (592)
..+.++......+... +-+..+|+..-.++...| ++++++..++++.+.+.+ +..+|+.--..+.+.|+. +++.
T Consensus 52 ~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 52 RSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence 3455555555554321 112223444444444444 456666666666554332 444455444444444432 4555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372 (592)
Q Consensus 313 ~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 372 (592)
.+++++.+.. +-|..+|+....++.+.|+++++++.++++++.++. |...|+.....+
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence 6665555443 345556666666666666666666666666665433 444554444433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-07 Score=58.51 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 251 ESFQTNVRDYSKLIDAHAKENCLEDAERILKKMN 284 (592)
Q Consensus 251 ~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~ 284 (592)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3789999999999999999999999999999984
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.3e-05 Score=79.92 Aligned_cols=218 Identities=13% Similarity=0.030 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..-..+...+...|-...|..+|+++. .+.-+|-+|+..|+..+|..+..+..++ +||...|..+....
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334456666777788888888877763 4556777888888888888888777763 67888888888877
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
....-+++|.++++..... .-..+-......++++++.+.|+.-.+.. ..-..+|-.+-.+..+.+++..+.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777788888888765442 11111111233678888888887655432 223466777777777888888888
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 488 ~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+.|.......+. +...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+......|.+++|++.+.+|...
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 888887775544 67788888888888888888888888887775 445666777777788888888888888877643
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00041 Score=79.05 Aligned_cols=226 Identities=11% Similarity=0.027 Sum_probs=142.8
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS-----EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 398 (592)
+.+...|-..|.-..+.++.++|.++.++.+.. +.+. ...|.++++.-...|.-+...++|+++.+. .-...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 444566777777777777777777777776653 2221 234556666655666666777777777654 22345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG---PATYTVLVD 475 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~ 475 (592)
.|..|...|.+.+..++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.+..+. -|. .....-.++
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 6677777777777777777777777764 1134556777777777777777777777776553 232 233444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhCCCH
Q 007695 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--DDFERIINGLLAGGFL 553 (592)
Q Consensus 476 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~a~~~~g~~ 553 (592)
.-.+.|+.+.+..+|......-++ -...|+.++++-.++|+.+.++.+|+++...+..+.. ..|...+.-=-++|+-
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 556777777777777777665443 4567777777777777777777777777776655432 2344444444455554
Q ss_pred HHH
Q 007695 554 QDA 556 (592)
Q Consensus 554 ~~A 556 (592)
..+
T Consensus 1688 ~~v 1690 (1710)
T KOG1070|consen 1688 KNV 1690 (1710)
T ss_pred hhH
Confidence 433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00051 Score=75.75 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=159.8
Q ss_pred HHcccccCCchhHHHHHHhh-cCCCHhhHHHHHH------HHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc
Q 007695 198 ILSLEKEEDPSPLLAEWKEL-LQPSRIDWINLLD------RLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270 (592)
Q Consensus 198 l~~~~~~g~~~~A~~~~~~~-~~p~~~t~~~lL~------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~ 270 (592)
+.++-..+-+.+-+++++++ ++|++++=|.=|. +++.. .....+.+.. -..+..+ .+...+...
T Consensus 991 VkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~r---LdnyDa~-----~ia~iai~~ 1061 (1666)
T KOG0985|consen 991 VKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINR---LDNYDAP-----DIAEIAIEN 1061 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHH---hccCCch-----hHHHHHhhh
Confidence 33444677778888888876 5666666443333 22221 1112222222 1222211 223445566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 007695 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~ 350 (592)
+-+++|..+|++... +....+.||. .-+.++.|.++-++.. ....|..+..+-.+.|...+|++-|
T Consensus 1062 ~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred hHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHH
Confidence 667778777776432 4444444443 2345555555544433 3346667777776777766666554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430 (592)
Q Consensus 351 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p 430 (592)
-+. + |+..|..+++.+.+.|.+++-.+.+.-.++..-.|.+. +.||-+|++.+++.+.+++.. .|
T Consensus 1128 ika---d---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gp 1192 (1666)
T KOG0985|consen 1128 IKA---D---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GP 1192 (1666)
T ss_pred Hhc---C---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CC
Confidence 332 1 55667777777777777777766666555554444433 456667777766665544332 25
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007695 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510 (592)
Q Consensus 431 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~ 510 (592)
+......+-+-|...|.++.|.-+|... .-|..|...+...|.+..|...-++.. +..+|..+..
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCF 1257 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHH
Confidence 5555556666666666666666555432 334455555555555555544433321 4455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 511 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
+|...+.+.-| +|-..+.....+-..-++.-|-..|.+++-+.+++
T Consensus 1258 aCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1258 ACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 55544433332 22222222333334445555555555555554444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0082 Score=63.24 Aligned_cols=136 Identities=15% Similarity=0.046 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 447 LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLG--------KISELGEAPPFKIQVSLCDMYARAGIE 518 (592)
Q Consensus 447 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~--------~m~~~g~~p~~~~~~~Li~~~~~~g~~ 518 (592)
...+|..++...-+....-........++.....|+++.|..++. .+.+.+.. +.+...+...|.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCC
Confidence 455666666655443211224556667778888999999999998 55555544 34556677778888887
Q ss_pred HHHHHHHHHHHHc--CCCCCHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHhhhhhc
Q 007695 519 KKALQALGFLEAK--KEQMGPDD----FERIINGLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVALISSQTFN 585 (592)
Q Consensus 519 ~~A~~~~~~m~~~--~~~~~~~~----~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~l~~~~~~~ 585 (592)
+.|..++...... ...+.... +.-+...-.+.|+.++|..+++++.... .+|. ..-..+.+.+..+
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 7777777765431 11122222 3333344457799999999999998742 3333 4445555555443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0017 Score=71.75 Aligned_cols=308 Identities=12% Similarity=0.056 Sum_probs=192.9
Q ss_pred ccCCchhHHHHHHhhcCCCHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 203 KEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKK 282 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~ 282 (592)
.++-+++|..+|+.. +-+....+.|+.-. ++.+.+.+.++.. -.+..|+.+..+-.+.|.+.+|.+-|-+
T Consensus 1060 ~~~LyEEAF~ifkkf-~~n~~A~~VLie~i--~~ldRA~efAe~~-------n~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-DMNVSAIQVLIENI--GSLDRAYEFAERC-------NEPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred hhhHHHHHHHHHHHh-cccHHHHHHHHHHh--hhHHHHHHHHHhh-------CChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 455556677776653 33444444444432 2334444444432 2334677888888888888888776633
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH
Q 007695 283 MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE 362 (592)
Q Consensus 283 m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~ 362 (592)
. -|+..|..++....+.|.+++-.+.+...++..-.|.+. +.||-+|++.++..+..+++ .-||.
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~ 1194 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNV 1194 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCc
Confidence 2 267778888888888888888888887776665455544 47788888888876655543 34677
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442 (592)
Q Consensus 363 ~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~ 442 (592)
.....+.+-|...+.++.|.-+|.. +.-|..|...+...|++..|...-++. .+..||-.+-.+|
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence 7777777778888888877777653 344666777777778877776655443 3567787777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522 (592)
Q Consensus 443 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 522 (592)
...+.+.-| +|-..++.....-..-++..|...|-+++...+++...... +.....|+-|.-.|++- ++++..
T Consensus 1260 vd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~ 1332 (1666)
T KOG0985|consen 1260 VDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMM 1332 (1666)
T ss_pred hchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHH
Confidence 766655433 22222334455667778888888888888888877654321 23556777777777765 345555
Q ss_pred HHHHHHHHcCCCC-------CHHHHHHHHHHHHhCCCHHHHH
Q 007695 523 QALGFLEAKKEQM-------GPDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 523 ~~~~~m~~~~~~~-------~~~~~~~li~a~~~~g~~~~A~ 557 (592)
+.++..-.+-..| ....|+-+.-.|.+-..++.|.
T Consensus 1333 EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1333 EHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 4444332221111 1234666776776666666553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.2e-05 Score=79.56 Aligned_cols=234 Identities=12% Similarity=0.021 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
..-..+...+.+.|-...|..+|+++. .|.-.|-+|+..|+..+|..+..+..+. +||...|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 334566778889999999999998764 4777888999999999999999888874 78999999988887
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417 (592)
Q Consensus 338 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 417 (592)
....-+++|.++.+..-.. .-..+.....+.+++.++.+.|+.-.... +....+|-.+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777778888887765332 22223333345788999999998877765 567888999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
+.|.......+ -+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...+...+....+.|.+++|.+.+.++.+..
T Consensus 540 ~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99998887433 256789999999999999999999999988876 4445566667777889999999999999876432
Q ss_pred C-CCCHHHHHHHHHHH
Q 007695 498 E-APPFKIQVSLCDMY 512 (592)
Q Consensus 498 ~-~p~~~~~~~Li~~~ 512 (592)
. ..+..+...++..-
T Consensus 618 ~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhcccchhhHHHHHHH
Confidence 1 12444444444443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0026 Score=74.75 Aligned_cols=270 Identities=16% Similarity=0.062 Sum_probs=180.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 007695 263 LIDAHAKENCLEDAERILKKMNENGIVPDI----VTSTVLVHMYSKAGNLDRAKEAFESLRSH----GF-QPDKKVYNSM 333 (592)
Q Consensus 263 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~t~~~l 333 (592)
+...+...|+++.|...++.....-...+. ...+.+...+...|++++|...+.+.... |- .....+++.+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 334566799999999999998763111222 24456667778899999999999887642 20 1112355666
Q ss_pred HHHHHHcCCchHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC--CHHHHHH
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITS----GIE--R-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEE--FQP--TLESCTL 402 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g--~~~--~~~~~~~ 402 (592)
...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 77888999999999998876552 211 1 23345556667778899999999988875431 112 2344555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCT-----ASMIAAYGKKNLLDKALNLLLELEKDGFEPG---PATYTVL 473 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~t~-----~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~l 473 (592)
+...+...|+++.|...+........ ......+ ...+..+...|+.+.|..++........... ...+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 67788899999999999988755211 1111111 1122445668999999999877544221111 1124566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 474 VDWLGRLQLINEAEQLLGKISEL----GEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 474 i~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..++...|+.++|...+++.... |..+ ...+...+..++.+.|+.++|...+.+..+..
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77888999999999999987643 2222 23466677888999999999999999887653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00056 Score=77.99 Aligned_cols=203 Identities=11% Similarity=0.100 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPD-----IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 332 (592)
..|-.-|......++++.|.+++++.... +.+. ...|.++++.-...|.-+...++|+++.+.. ---..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 34666666777777777777777776654 2221 2356666666666676677777777777642 12345667
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHc
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP--TLESCTLLVEAYGQA 410 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~Li~~~~~~ 410 (592)
|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+.++-+.|..++.+..+.- +. .+....-.+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhc
Confidence 777777777777777777777764 33456677777777777777777777777666542 11 234444555566677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007695 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG 466 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~ 466 (592)
|+.+.+..+|+......++ -...|+..|+.=.++|+.+.+..+|++....++.|-
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 7777777777777665333 456677777777777777777777777777666554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00025 Score=68.99 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--H
Q 007695 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT---LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD--R 433 (592)
Q Consensus 359 ~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ 433 (592)
......+..+...+.+.|+++.|...++++.... +.+ ..++..+..+|.+.|++++|...|+++.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456778888888999999999999999887764 222 246777888999999999999999999875442222 1
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 007695 434 CTASMIAAYGKK--------NLLDKALNLLLELEKDGFEPGPA-TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504 (592)
Q Consensus 434 t~~~li~a~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 504 (592)
++..+..++.+. |+.++|...|+.+... .|+.. ....+... .. ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HH--------HHH
Confidence 344444455544 6788888888888764 34322 22211111 00 000 00 011
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEAKKE--QMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
...+...|.+.|++.+|...++....... +..+..+..+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23566778999999999999999887532 223567889999999999999999999988754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0047 Score=64.36 Aligned_cols=345 Identities=12% Similarity=0.116 Sum_probs=196.0
Q ss_pred CHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 221 SRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH 300 (592)
Q Consensus 221 ~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~ 300 (592)
|..+|+.||.-+.....+......+.++.. ++-....|..-|..-.+.++++..+++|.+....- .+...|..-|+
T Consensus 19 di~sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHH
Confidence 788899999998666888888888888754 45566778888999999999999999999987753 35667777775
Q ss_pred HHHHc-CCHHH----HHHHHHHHH-hCCCCCC-HHHHHHHHHHH---------HHcCCchHHHHHHHHHHHCCCCCCHHH
Q 007695 301 MYSKA-GNLDR----AKEAFESLR-SHGFQPD-KKVYNSMIMAY---------VNAGQPKLGMSLVDMMITSGIERSEEI 364 (592)
Q Consensus 301 ~~~~~-g~~~~----A~~~~~~m~-~~g~~pd-~~t~~~li~a~---------~~~g~~~~A~~l~~~m~~~g~~p~~~t 364 (592)
.--+. ++... ..+.|+-.. +.|+.+- -..|+..+.-+ ..+.+.+...++|++++...+.-=...
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 54432 33333 334455443 4454332 23456555433 334456677788888775432211111
Q ss_pred HH------HHHHH-------HHhCCCHHHHHHHHHHHHHc--CCCCCH---------------HHHHHHHH---------
Q 007695 365 YL------ALLRS-------FAQCGDVRGAGQITNIMRIE--EFQPTL---------------ESCTLLVE--------- 405 (592)
Q Consensus 365 ~~------~Ll~~-------~~~~g~~~~A~~~~~~m~~~--g~~~~~---------------~~~~~Li~--------- 405 (592)
|+ .=|+. --+...+..|.++++++... |+..+. ..|-.+|.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t 254 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRT 254 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccc
Confidence 11 11111 01223344555555554321 211110 01211111
Q ss_pred ----------------------------------------HHHHcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 406 ----------------------------------------AYGQAGD-------PDQARSNFDYMIRLGHKPDDRCTASM 438 (592)
Q Consensus 406 ----------------------------------------~~~~~g~-------~~~A~~lf~~m~~~g~~pd~~t~~~l 438 (592)
.+...|+ -+++..+++.....-..-+..+|..+
T Consensus 255 ~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~ 334 (656)
T KOG1914|consen 255 LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFAL 334 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 12222233222221111111122211
Q ss_pred HHHHH---hcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHH
Q 007695 439 IAAYG---KKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP-PFKIQVSLCDMYA 513 (592)
Q Consensus 439 i~a~~---~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~Li~~~~ 513 (592)
.+.-- .-+..+.....+.++... ...|+ -+|..++....+..-+..|..+|.++.+.+..+ ++.++++++..|+
T Consensus 335 a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 335 ADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 11100 011234444455555443 33343 467777777778888888999999888877766 6777788887665
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
.++.+-|.++|+.-..+ ..-++.--...+.-+...++-..|..+|++....++.|+.
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 56788888888865544 3334444466777778888888888888888888777776
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.5e-05 Score=77.54 Aligned_cols=218 Identities=14% Similarity=0.048 Sum_probs=154.5
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
+.+.|++.+|.-.|+..+..+.. +...|..|.......++-..|+..+.+..+.. +.|..+.-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 45677788888888877776533 67777777777777777777888887777765 55677778888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 417 RSNFDYMIRLGHKPDDRCTASMI-----------AAYGKKNLLDKALNLLLELEK-DGFEPGPATYTVLVDWLGRLQLIN 484 (592)
Q Consensus 417 ~~lf~~m~~~g~~pd~~t~~~li-----------~a~~~~g~~~~A~~l~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~ 484 (592)
...|+......++ |..+. ..+.....+....++|-++.. .+..+|+.....|--.|--.|.++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 8888776553221 00000 011111223344555555543 355577777888887888889999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG-PDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
+|...|+......+. |..+||-|...++...+.++|...|.+..+. .|+ +.....|...|...|.+++|.+.|-..
T Consensus 448 raiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999988876555 7889999999999999999999999988875 333 334445788889999999998887654
Q ss_pred H
Q 007695 564 E 564 (592)
Q Consensus 564 ~ 564 (592)
+
T Consensus 525 L 525 (579)
T KOG1125|consen 525 L 525 (579)
T ss_pred H
Confidence 4
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00023 Score=69.21 Aligned_cols=185 Identities=17% Similarity=0.105 Sum_probs=99.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H---H
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIV-PD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD-K---K 328 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~---~ 328 (592)
.....+-.+...+.+.|+++.|...|+++...... |. ...+..+..++...|++++|...|+++.+.. |+ . .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 34556667777778888888888888887765221 11 1355667777788888888888888877542 22 1 1
Q ss_pred HHHHHHHHHHHc--------CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 329 VYNSMIMAYVNA--------GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400 (592)
Q Consensus 329 t~~~li~a~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 400 (592)
++..+..++.+. |++++|.+.|+.+...... +...+..+..... .. ... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~--------~~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHH--------HHHH
Confidence 344444455443 4556666666666554211 1122211111100 00 000 0011
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRLGH-KP-DDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
..+...|.+.|++.+|...|.......+ .| ....+..+..++.+.|++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2344456666666666666666655322 11 234555666666666666666666665544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00021 Score=74.63 Aligned_cols=252 Identities=15% Similarity=0.089 Sum_probs=159.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 007695 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380 (592)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~ 380 (592)
-+.+.|++.+|.-.|+...+.. +-+...|--|......+++-..|+..+.+..+.+.. |......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3456777777777777766553 445667777777777777777777777777765432 56667777777777777777
Q ss_pred HHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007695 381 AGQITNIMRIEEFQ--------PTLESCTLLVEAYGQAGDPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKA 451 (592)
Q Consensus 381 A~~~~~~m~~~g~~--------~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~-~g~~pd~~t~~~li~a~~~~g~~~~A 451 (592)
|...++.-.....+ ++...-.. ..+.....+....++|-++.. .+.++|......|--.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 77777766543200 00000000 111222233444555555544 45456677777777778888888888
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 452 LNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 452 ~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.+.|+..+. ++|+ ..+||-|-..++...+..+|..-|++..+..+. -+.+...|.-.|...|.+++|.+.|-....
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 888888776 3454 567888888888888888888888888875332 234555677778888888888887755432
Q ss_pred ---cC------CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 007695 531 ---KK------EQMGPDDFERIINGLLAGGFLQDAQRV 559 (592)
Q Consensus 531 ---~~------~~~~~~~~~~li~a~~~~g~~~~A~~l 559 (592)
++ ..++...|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 21 111234677776677767776644443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0058 Score=66.22 Aligned_cols=356 Identities=15% Similarity=0.095 Sum_probs=219.2
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHH-cccccCCchhHHHHHHhh--cC--CCHhhHHHHHHHHHhh---CHHHH
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKIL-SLEKEEDPSPLLAEWKEL--LQ--PSRIDWINLLDRLREQ---NTQLY 240 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~-~~~~~g~~~~A~~~~~~~--~~--p~~~t~~~lL~~~~~~---~~~~~ 240 (592)
.|++..+.+.| +...+..-........+. ++.-.|.-..|..+.+.. .. |+..+--.+...++.. ..++.
T Consensus 336 ~g~f~~lae~f--E~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eeg 413 (799)
T KOG4162|consen 336 CGQFEVLAEQF--EQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEG 413 (799)
T ss_pred HHHHHHHHHHH--HHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhH
Confidence 45666666666 222222222222333333 333778888888888765 23 5545544444433332 24444
Q ss_pred HHHHHHHhhhCCC---CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007695 241 FKVAELVLSEESF---QTNVRDYSKLIDAHAKE-----------NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG 306 (592)
Q Consensus 241 ~~~~~~~~~~~~~---~p~~~~y~~Li~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g 306 (592)
...+.+.++..+- ......|-.+.-+|... ....++++.+++..+.+.. |..+.-.+.--|+..+
T Consensus 414 ldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R 492 (799)
T KOG4162|consen 414 LDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQR 492 (799)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHH
Confidence 4444444431111 12333455555555432 1235678888888776433 3333333455677888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-CCC------------------CCHHHHHH
Q 007695 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-GIE------------------RSEEIYLA 367 (592)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~------------------p~~~t~~~ 367 (592)
+++.|.+...+..+.+-.-+...|..+.-.+...+++..|+.+.+..... |.. --..|+..
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 99999999999988755778889999999999999999999988776542 210 01122223
Q ss_pred HHHHHHh------C-----------------CCHHHHHHHHHHH--------HHcC---------CC--CC------HHH
Q 007695 368 LLRSFAQ------C-----------------GDVRGAGQITNIM--------RIEE---------FQ--PT------LES 399 (592)
Q Consensus 368 Ll~~~~~------~-----------------g~~~~A~~~~~~m--------~~~g---------~~--~~------~~~ 399 (592)
++..+-. . .+..++.+....+ ...+ +. |+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 3322220 0 0111111111111 0011 00 11 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLG 478 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~ 478 (592)
|......+.+.++.++|...+.+.....+ -....|...-..+...|...+|...|..... +.|+ +....++..++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 44556677788888888877777665322 2445566555677788999999999988766 4454 567888999999
Q ss_pred HcCCHHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 479 RLQLINEAEQ--LLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 479 ~~g~~~~A~~--l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..|+..-+.. ++..+.+.+.. +...|..+...+.+.|+.+.|...|+...+.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9998887777 99999998776 8999999999999999999999999977664
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0025 Score=61.49 Aligned_cols=316 Identities=14% Similarity=0.083 Sum_probs=167.0
Q ss_pred ccccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHH-HHHHHHcCCHHH
Q 007695 201 LEKEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKL-IDAHAKENCLED 275 (592)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~L-i~~~~~~g~~~~ 275 (592)
+.+..++++|++.+..-. .| ++...+.+-.++ ..+....+....+++-. ..|...-|..- ...+.+.+.+..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHHhcccHH
Confidence 346667777777765432 23 444444444444 44445555555444322 24544444332 345566777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 007695 276 AERILKKMNENGIVPDIVTSTVLVHMY--SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM 353 (592)
Q Consensus 276 A~~l~~~m~~~g~~pd~~~~~~Li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 353 (592)
|+.+...|... |+...-..-+.+. -..+++..+..+.++....| +..+.+.......+.|+++.|.+-|+..
T Consensus 97 ALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 97 ALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred HHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHH
Confidence 77777776542 2222222222222 23567777777777776433 5555555555666778888888888777
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-------------CHH---------------HHHHHH
Q 007695 354 ITS-GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP-------------TLE---------------SCTLLV 404 (592)
Q Consensus 354 ~~~-g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~-------------~~~---------------~~~~Li 404 (592)
.+- |.. ....|+..+..| +.++++.|++...++.++|+.- |+. .+|.-.
T Consensus 171 lqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 171 LQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 664 343 445666555444 5577778888888887777641 111 122223
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 405 EAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 405 ~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
..+.+.|+++.|.+.+-+|.-. ....|.+|...+.-. -..+++-...+-+.-+...+ +....||..++-.||+..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHH
Confidence 3445667777777777666542 223455555543221 12233433344444444432 22346777777777777777
Q ss_pred HHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 484 NEAEQLLGKISELGEA-PPFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~-p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
+.|..++.+=...-.. .+...|+.|=..-...-..++|.+-++.+.
T Consensus 327 ~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 327 DLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred hHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7777666543322111 123333332222223345556655555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.01 Score=62.54 Aligned_cols=372 Identities=12% Similarity=0.033 Sum_probs=204.4
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHHc-ccccCCchhHHHHHHhhcCCCHhhHHHHHHHH--HhhCHHHHHHHHH
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKILS-LEKEEDPSPLLAEWKELLQPSRIDWINLLDRL--REQNTQLYFKVAE 245 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~--~~~~~~~~~~~~~ 245 (592)
.+.++||...+. ..+..+.. +...=.. +||.|++++|+.+++.+.+-+...+..-+.+- +... .....
T Consensus 92 lnk~Dealk~~~--~~~~~~~~---ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLK--GLDRLDDK---LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ 162 (652)
T ss_pred cccHHHHHHHHh--cccccchH---HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH
Confidence 467777877772 11222222 2222223 45999999999999998655544444444321 1111 11111
Q ss_pred HHhhhCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHHHcCCH
Q 007695 246 LVLSEESFQTNVRDYSKL---IDAHAKENCLEDAERILKKMNENG-------------IVPDIV-TSTVLVHMYSKAGNL 308 (592)
Q Consensus 246 ~~~~~~~~~p~~~~y~~L---i~~~~~~g~~~~A~~l~~~m~~~g-------------~~pd~~-~~~~Li~~~~~~g~~ 308 (592)
.+......| ..+|..+ ...+...|++.+|+++++...+.+ +.-... .-.-|..++...|+.
T Consensus 163 -~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 163 -LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 122222233 2244433 345667899999999999883221 010111 123456677788999
Q ss_pred HHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCch-HHHHHHHHHHHCC-----------CCCCHHHHHHHHHHH
Q 007695 309 DRAKEAFESLRSHGFQPDKK----VYNSMIMAYVNAGQPK-LGMSLVDMMITSG-----------IERSEEIYLALLRSF 372 (592)
Q Consensus 309 ~~A~~~~~~m~~~g~~pd~~----t~~~li~a~~~~g~~~-~A~~l~~~m~~~g-----------~~p~~~t~~~Ll~~~ 372 (592)
++|..+|....+.. .+|.. .-|.++..-....-++ .++..++...... -.-....-+.++..|
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998775 44542 2333333221111122 1222222211110 000111112333333
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ--AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~--~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 450 (592)
. +..+.+.++....... .|. ..+.+++....+ ...+..|..++...-+....-.....-.++......|+++.
T Consensus 320 t--nk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 320 T--NKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred h--hhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence 3 3334444444333321 233 334444433322 22467777777777664333234455566777888999999
Q ss_pred HHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCHH----HHHHHHHHHHHcC
Q 007695 451 ALNLLL--------ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL--GEAPPFK----IQVSLCDMYARAG 516 (592)
Q Consensus 451 A~~l~~--------~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~----~~~~Li~~~~~~g 516 (592)
|..++. .+.+.+..| .+...++..+.+.++.+.|..++...... ...+... ++.-+...-.++|
T Consensus 395 A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G 472 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG 472 (652)
T ss_pred HHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence 999998 454444444 55666777788888877777777766532 0111222 3333444456789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 517 IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 517 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
+.++|..+++++... .+++.++...++.+|++. +.+.|..+-+
T Consensus 473 ~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 473 NEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred chHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999987 466888889999999876 4456655544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00086 Score=75.76 Aligned_cols=239 Identities=12% Similarity=0.087 Sum_probs=147.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIV-TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 332 (592)
+.+...+..|+..+...+++++|.++.+...+. .|+.. .|-.+...+.+.++...+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 346667889999999999999999999977665 34433 333344466666665554444 3
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~ 412 (592)
++.......++.-+..+...|...+ -+...+..+..+|-+.|+.+++..+++++.+.. +-|..+.|.+...|... +
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 3333334444544444444555432 355688888889999999999999999998887 66788889999988888 9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492 (592)
Q Consensus 413 ~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 492 (592)
+++|..++.+.... |...+++..+..+|..+.... |+ +++.-.++.+.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~k 212 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIERK 212 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHHH
Confidence 99998888877663 445556666666666665532 22 11222222222
Q ss_pred HHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 493 ISEL-GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548 (592)
Q Consensus 493 m~~~-g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~ 548 (592)
+... +..--..++..+...|....+++++..+++.+.+.... |.....-++.+|.
T Consensus 213 i~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 213 VLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 2222 22223445555555566666666666666666554222 3333444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00059 Score=64.40 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCC--HHHH
Q 007695 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF-AQCGD--VRGA 381 (592)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~-~~~g~--~~~A 381 (592)
.++.+++...++...+.. +.|...|..+...|...|+++.|...|++...... -+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 555566666666666554 56677777777777777777777777777776542 2566666666653 55565 4777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 382 ~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
.+++++..+.+ +.+..++..+...+.+.|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777765 456677777777777777777777777777764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00075 Score=63.69 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=112.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 007695 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 298 Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 377 (592)
-+..|...|+++.+....+.+.. |. . .+...++.+++...++...... +.|...|..+...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 34567777887776555433321 11 0 1112556677777777777654 4478888888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEA-YGQAGD--PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNL 454 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~-~~~~g~--~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 454 (592)
+++|...|+...... +.+...+..+..+ |...|+ .++|..++++..+..+. +..++..+...+.+.|++++|+..
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999888876 5577888888876 467677 58999999988886554 667777788888889999999999
Q ss_pred HHHHHHCCCCCCHHHH
Q 007695 455 LLELEKDGFEPGPATY 470 (592)
Q Consensus 455 ~~~m~~~g~~p~~~ty 470 (592)
|+.+.+.. +|+..-+
T Consensus 167 ~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 167 WQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHhhC-CCCccHH
Confidence 99887753 4454443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0015 Score=73.86 Aligned_cols=238 Identities=15% Similarity=0.074 Sum_probs=161.6
Q ss_pred CCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007695 220 PSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298 (592)
Q Consensus 220 p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L 298 (592)
.+...|..|+..+ ..+..+.+.+..+..+...+-.+.. |-.+...+.+.++++.+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 3566688999988 7788888998888766543333333 33444477777776555444 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
+.......++.....++..|... .-+..++..+..+|-+.|+.++|..+++++++.. +-|+.+.|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 44444555554555555556654 3355688899999999999999999999999987 44889999999999999 99
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
++|.+++...... |...+++..+..+|.++.... |+... .-..+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d---------------~f~~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFD---------------FFLRIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccch---------------HHHHHHHHH
Confidence 9999998887754 666778888888888888743 22221 112223333
Q ss_pred HHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007695 459 EKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYA 513 (592)
Q Consensus 459 ~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~ 513 (592)
... |..--..++-.+-..|...++++++..+++.+.+.... |.....-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 222 22333455556666777777888888888888776555 5666666666665
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0019 Score=61.50 Aligned_cols=170 Identities=18% Similarity=0.147 Sum_probs=95.5
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 007695 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428 (592)
Q Consensus 349 l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~ 428 (592)
+.+.+.......+......-...|+..+++++|++...... +..+...=...+.+..+.+-|...+++|.+-
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 33444443333333444444555667777777776665522 3333333344455666677777777777662
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHH
Q 007695 429 KPDDRCTASMIAAYGK----KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKI 504 (592)
Q Consensus 429 ~pd~~t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~ 504 (592)
-+..|.+.+..++.+ .+.+..|.-+|++|.+ ...|+..+.+-...++...+++++|..+++........ ++.+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHH
Confidence 245555555555543 2456667777777644 24566677777776777777777777777777666554 5555
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHH
Q 007695 505 QVSLCDMYARAGIEKK-ALQALGFLE 529 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~-A~~~~~~m~ 529 (592)
...++.+-...|...+ ..+.+.++.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 5555555545554433 333444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00044 Score=61.68 Aligned_cols=89 Identities=9% Similarity=-0.049 Sum_probs=35.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
...+...|++++|...|+...... +.+..+|..+..++...|++++|...|+.....+ +.+..++..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 333344444444444444443332 2233344444444444444444444444444322 12333344444444444444
Q ss_pred HHHHHHHHHHH
Q 007695 379 RGAGQITNIMR 389 (592)
Q Consensus 379 ~~A~~~~~~m~ 389 (592)
++|...|....
T Consensus 109 ~eAi~~~~~Al 119 (144)
T PRK15359 109 GLAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0021 Score=68.77 Aligned_cols=193 Identities=15% Similarity=0.172 Sum_probs=98.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
+.+....+.+.+|+.+++.+..+. .-..-|..+..-|...|+++.|.++|.+. + .++-.|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccH
Confidence 444455566666666666665432 12223445556666666666666666543 1 344456666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
.+|.++-.+.. |-......|-+-..-+-++|.+.+|.++|-.+.. |+. .|..|-+.|..+..+++..+-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHh
Confidence 66666554433 2233344455555555566666666655544322 332 345555666666555555432
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 459 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
.-. .-..|...+..-|...|++..|..-|-+.- -|.+-+++|...+.+++|.++-
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 111 112334444455555666666655443322 2344455555555555555543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.002 Score=61.43 Aligned_cols=255 Identities=17% Similarity=0.105 Sum_probs=161.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
++-+.-.|++..++..-...... +-+...-.-+-++|...|++.....- ... |-.|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchh
Confidence 45555567787777665554432 23445555667788888876544322 222 2233344444444444444444
Q ss_pred HHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007695 379 RGAG-QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457 (592)
Q Consensus 379 ~~A~-~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~ 457 (592)
+.-. ++.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 344444444334444444555667888999999988887622 333333345566778888999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 007695 458 LEKDGFEPGPATYTVLVDWLGR----LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE 533 (592)
Q Consensus 458 m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~ 533 (592)
|.+- -+..|.+.|..++.+ .+.+.+|..+|++|.++ ..|+..+.+-...++...|++++|..+++....+.
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 9762 356777777777754 35588899999999764 56788888888888999999999999999888874
Q ss_pred CCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHCCCCCCH
Q 007695 534 QMGPDDFERIINGLLAGGFLQD-AQRVHGLMEAQGFAASE 572 (592)
Q Consensus 534 ~~~~~~~~~li~a~~~~g~~~~-A~~l~~~m~~~g~~pd~ 572 (592)
.-++.+...+|.+-...|...+ ..+.+.+++.. .|+.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~--~p~h 275 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS--HPEH 275 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc--CCcc
Confidence 3457776556655555555544 44556666544 4444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00088 Score=63.75 Aligned_cols=159 Identities=15% Similarity=0.028 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~ 340 (592)
..+-..+.-.|+-+....+....... .+-|....+.++....+.|++..|...|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444444555555555555443322 12244455556666666666666666666665543 55666666666666666
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNF 420 (592)
Q Consensus 341 g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf 420 (592)
|+.++|..-|.+..+... -++..++.+.-.|.-.|+.+.|..++......+ .-|...-..+.......|+++.|..+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666666666665422 244555566666666666666666666665554 335555556666666666666666655
Q ss_pred HHH
Q 007695 421 DYM 423 (592)
Q Consensus 421 ~~m 423 (592)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.002 Score=61.34 Aligned_cols=56 Identities=13% Similarity=-0.012 Sum_probs=21.6
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
.+....+.|++..|...+++.... -++|..+|+.+.-+|.+.|+.+.|..-|.+..
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl 161 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQAL 161 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHH
Confidence 333333444444444444333332 12233344444444444444444443333333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.03 Score=61.83 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=39.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 345 (592)
.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|+..... -|+......+..+|.+.+++.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444333 5555555555555555555555555555543 3444455555555555554443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0041 Score=69.55 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
..++..+-.|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|...+++..... +-+....+.+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 5568889999999999999999999999998853 2256677888899999999999999999999876 5667888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
..++.+.|++++|..+|++....+. -+..++...-.++-..|+.++|...|+...+.. .|....|+.++. ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HH
Confidence 9999999999999999999998433 246788888889999999999999999987652 355566665542 33
Q ss_pred HHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHc
Q 007695 484 NEAEQLLGKISEL----GEAPPFKIQVSLCDMYARA 515 (592)
Q Consensus 484 ~~A~~l~~~m~~~----g~~p~~~~~~~Li~~~~~~ 515 (592)
..-..+++++.-. |......+....|.-|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 4444556655432 2222333444455555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.026 Score=55.95 Aligned_cols=343 Identities=11% Similarity=0.015 Sum_probs=179.3
Q ss_pred ccCCchhHHHHHHhhc---CCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 203 KEEDPSPLLAEWKELL---QPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~---~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~ 278 (592)
+.|++++|+..+.-+. .++...|-.|--+. -.+...++...... .+.++..-..|.+...+.++-.+-..
T Consensus 69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k------a~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK------APKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh------CCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 7888888888876652 33333333222221 22333333332221 23344444555666667777777666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCchHHHHHHHHHHHCC
Q 007695 279 ILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI-MAYVNAGQPKLGMSLVDMMITSG 357 (592)
Q Consensus 279 l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li-~a~~~~g~~~~A~~l~~~m~~~g 357 (592)
+.+.+... ..---+|....-..-.+.+|.++|...+.. .|+-...|..+ -+|.+..-++-+.+++.-.+..
T Consensus 143 fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 143 FHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 66665442 222334555555555678888998888865 45666666544 4566777777788887777664
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------------------------CC-----HHHHHHHHHH
Q 007695 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ--------------------------PT-----LESCTLLVEA 406 (592)
Q Consensus 358 ~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~--------------------------~~-----~~~~~~Li~~ 406 (592)
++-++...|.......+.=+-..|..-.+++...+-. |. ..+--.|+-.
T Consensus 215 ~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iY 294 (557)
T KOG3785|consen 215 FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIY 294 (557)
T ss_pred CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheee
Confidence 3334555555555555443333444444444433210 00 0111223344
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHh----cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHc
Q 007695 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA-YGK----KNLLDKALNLLLELEKDGFEPGP-ATYTVLVDWLGRL 480 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a-~~~----~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~ 480 (592)
|.+.+++.+|..+.+++.- ..|-....-.++.+ +.+ .....-|.+.|+-.-..+..-|. .---++..++.-.
T Consensus 295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred ecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 5566666666666555432 12222222111111 111 11233344444433333322221 1122344444445
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhCCCHHHHHHH
Q 007695 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFE-RIINGLLAGGFLQDAQRV 559 (592)
Q Consensus 481 g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~a~~~~g~~~~A~~l 559 (592)
.++++++..++.+...-.. |-...-.+..+++..|++.+|.++|-++....+. +..+|- .|.++|.+.++.+-|+.+
T Consensus 373 ~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence 5667777666666554333 3333335677888888888888888776544322 445564 456778888888888777
Q ss_pred HHHH
Q 007695 560 HGLM 563 (592)
Q Consensus 560 ~~~m 563 (592)
+-++
T Consensus 451 ~lk~ 454 (557)
T KOG3785|consen 451 MLKT 454 (557)
T ss_pred HHhc
Confidence 6555
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0078 Score=65.47 Aligned_cols=316 Identities=13% Similarity=0.105 Sum_probs=171.7
Q ss_pred HHHHHc--cc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHHH-hhC----------HHHH--HHHHHHHhhhCCCCCCHH
Q 007695 195 TDKILS--LE-KEEDPSPLLAEWKELLQPSRIDWINLLDRLR-EQN----------TQLY--FKVAELVLSEESFQTNVR 258 (592)
Q Consensus 195 ~~~l~~--~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~~-~~~----------~~~~--~~~~~~~~~~~~~~p~~~ 258 (592)
..+++. +| -.|+.+.|.+-.+.+ .+...|..+-..|. ..+ +..+ ...+++.. ..++ .
T Consensus 729 Rkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~----q~~~-e 801 (1416)
T KOG3617|consen 729 RKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ----QNGE-E 801 (1416)
T ss_pred HHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH----hCCc-c
Confidence 344554 56 889999997665543 23455666666552 221 1111 11122211 1232 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
+-..+.......|.+++|+.+|.+.+. |..|=..|...|.+++|.++-+.=.+. .=..||.....-+-
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLE 869 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHH
Confidence 223334445678899999999988776 445556777889999998876543221 12246666666666
Q ss_pred HcCCchHHHHHHHHHHHC----------C---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 339 NAGQPKLGMSLVDMMITS----------G---------IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~----------g---------~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
..++.+.|++.|++.... . -.-|...|.-....+-..|+++.|+.+|...+ -
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D 940 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------D 940 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------h
Confidence 777788887777653111 0 01122233333334444566666666665443 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 479 (592)
|-+++...|-.|+.++|-++-++- -|......+...|-..|++.+|..+|.+.. +|...|+.|-.
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKE 1005 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKE 1005 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHh
Confidence 344555556666777666665543 244555567778888888888888887653 33344443322
Q ss_pred cCC---------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-H-------HHHH--cCCC
Q 007695 480 LQL---------------INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL-G-------FLEA--KKEQ 534 (592)
Q Consensus 480 ~g~---------------~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~-~-------~m~~--~~~~ 534 (592)
.+- .-.|.+.|++. |.. ...-+..|-+.|.+.+|+++- + ++.. ....
T Consensus 1006 nd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred cCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 221 12222222221 111 112344677888888887762 1 1222 2233
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 535 MGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 535 ~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
-|+...+.-..-++...++++|..++-
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666666666666667777666553
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0056 Score=68.50 Aligned_cols=183 Identities=11% Similarity=0.082 Sum_probs=144.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007695 288 IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA 367 (592)
Q Consensus 288 ~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 367 (592)
+..++..+-.|.......|.+++|..+++...+.. +-+......+...+.+.+++++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 45578899999999999999999999999999873 445667888999999999999999999999987533 7788888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~ 447 (592)
+..++.+.|++++|..+|+++...+ +-+..++..+...+-..|+.++|...|+...+. ..|....|+..+ ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HH
Confidence 9999999999999999999999843 455899999999999999999999999999874 234556666544 33
Q ss_pred HHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHc
Q 007695 448 LDKALNLLLELEKD----GFEPGPATYTVLVDWLGRL 480 (592)
Q Consensus 448 ~~~A~~l~~~m~~~----g~~p~~~ty~~li~~~~~~ 480 (592)
...-..+++++.-. |...........|.-|.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 44556667766543 2233344455566556554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0011 Score=59.07 Aligned_cols=88 Identities=13% Similarity=-0.126 Sum_probs=35.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520 (592)
Q Consensus 441 a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~ 520 (592)
++.+.|++++|...|+...... +.+...+..+..++...|++++|...|+........ +...+..+..++...|++++
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444433321 122333334444444444444444444444433222 33344444444444444444
Q ss_pred HHHHHHHHHH
Q 007695 521 ALQALGFLEA 530 (592)
Q Consensus 521 A~~~~~~m~~ 530 (592)
|...|+....
T Consensus 111 Ai~~~~~Al~ 120 (144)
T PRK15359 111 AREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.8e-05 Score=50.44 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGFAAS 571 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd 571 (592)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 589999999999999999999999999999998
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0074 Score=65.63 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=95.9
Q ss_pred cCCCHhhHHHHHHHH---HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C------
Q 007695 218 LQPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN-G------ 287 (592)
Q Consensus 218 ~~p~~~t~~~lL~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g------ 287 (592)
.+=|..|-.++|.-- ..|+++.+.+.++-. .+..+|..+.+.|.+.++++-|.--+..|... |
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHH
Confidence 445666666676631 567777777766543 23347888999999988888887777666432 1
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHH
Q 007695 288 --IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIY 365 (592)
Q Consensus 288 --~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 365 (592)
-.|+ .+-.-..-.....|.+++|..+|.+-++ |..|-..|...|.+++|.++-+.--... =..||
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Ty 861 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTY 861 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhH
Confidence 1122 2222233344567888888888888774 3445556667888888888765432222 23466
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 007695 366 LALLRSFAQCGDVRGAGQITNIM 388 (592)
Q Consensus 366 ~~Ll~~~~~~g~~~~A~~~~~~m 388 (592)
.....-+-..++.+.|++.|++.
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhc
Confidence 66666666677777777777653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00085 Score=58.87 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
.+..+..++.+.|++++|..+++.....+ +.+...+..+...|...|++++|...|+...
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333333333322 2233333333333334444444444443333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=58.12 Aligned_cols=97 Identities=14% Similarity=0.001 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
......+...+...|++++|...++.+...+ +.+...+..+...|.+.|++++|...|+.....++ .+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 3445566666677777777777777766654 44666777777777777777777777777666433 244555556666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007695 442 YGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m~~ 460 (592)
|...|++++|...|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.022 Score=54.16 Aligned_cols=168 Identities=14% Similarity=0.197 Sum_probs=92.8
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 253 FQTNVRD-YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL-VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 253 ~~p~~~~-y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~L-i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
..++..+ |..++-+....|+.+.|...++.+..+ + |...-...| .-.+-..|++++|.++|+.+.+.+ +-|..+|
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHH
Confidence 3455544 555555666666777777777666655 2 222211111 112234566667777777666654 4455555
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
---+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-.. |.+...+..+...+.-.
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHH
Confidence 55555555556666666666665554 44466666666666666666666666666666553 33444444454444433
Q ss_pred C---CHHHHHHHHHHHHH
Q 007695 411 G---DPDQARSNFDYMIR 425 (592)
Q Consensus 411 g---~~~~A~~lf~~m~~ 425 (592)
| ++.-|.+.|.+..+
T Consensus 202 gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 202 GGAENLELARKYYERALK 219 (289)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 3 34455555555555
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.034 Score=57.60 Aligned_cols=183 Identities=16% Similarity=0.079 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
.|+...+...+.+......-..+..++.+..+. .-...-|...+. +...|+++.|+..++.+.... +-|...+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345555666666554433333333333222221 112233433333 445677888888888877653 4556666677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPD-DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 482 (592)
...+.+.++..+|.+.++.+... .|+ ....-.+-.+|.+.|++.+|+.+++..... .+-|+..|..|.++|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCc
Confidence 77788888888888888887774 344 344445667778888888888888777554 35567778888888888877
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 483 ~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..++..- ....|...|+++.|...+....+.
T Consensus 424 ~~~a~~A------------------~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 424 RAEALLA------------------RAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred hHHHHHH------------------HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 6555433 334456677777777777776665
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.6e-05 Score=49.42 Aligned_cols=33 Identities=42% Similarity=0.662 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPD 291 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd 291 (592)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.015 Score=62.53 Aligned_cols=219 Identities=17% Similarity=0.158 Sum_probs=150.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
...+...|+++.|...|-+.. ...-.+.+......+.+|+.+++.+.+.... .--|..+...|+..|++
T Consensus 713 g~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhH
Confidence 344455677777776664433 2234455667788999999999988776432 33477788899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
+.|.++|.+. ..++--|.+|.+.|.|+.|.++-.+.. |+......|-+-..-.-+.|++.+|.++|-..
T Consensus 782 e~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 782 EIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred HHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 9999988653 234567889999999999988876553 45545566666666677889999998888654
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 459 EKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPD 538 (592)
Q Consensus 459 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 538 (592)
. .|+. .|..|-+.|..+...++..+-.... -..|...+..-|...|+...|..-|-+..+
T Consensus 851 ~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d-------- 910 (1636)
T KOG3616|consen 851 G----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------- 910 (1636)
T ss_pred c----CchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh--------
Confidence 2 3553 4677888899888888877654221 235666777788888888888877654322
Q ss_pred HHHHHHHHHHhCCCHHHHHHHH
Q 007695 539 DFERIINGLLAGGFLQDAQRVH 560 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~ 560 (592)
|.+-++.|...+-|++|.++-
T Consensus 911 -~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 911 -FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred -HHHHHHHhhhhhhHHHHHHHH
Confidence 455555666666666655443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.2e-05 Score=49.42 Aligned_cols=32 Identities=31% Similarity=0.536 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVP 290 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 290 (592)
+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55555666666666666666666655555554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.094 Score=55.03 Aligned_cols=151 Identities=7% Similarity=0.001 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 413 PDQARSNFDYMIRL-GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP-GPATYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 413 ~~~A~~lf~~m~~~-g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~ 490 (592)
.+....+++++... .+.| +.+|...+..-.+..-+..|..+|.+..+.+..+ ++..+++++..+| .++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 55556666666653 3343 3466677888888888999999999999887777 6777888887666 46788899999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG--PDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 491 ~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+--.+.-.. +...-...++-+...++-..|..+|++....+..++ ...|..+|.-=...|+...++++-+++...
T Consensus 425 eLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 876654222 445556778888899999999999999988744443 457999999999999999999988877643
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0018 Score=67.15 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=93.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 374 (592)
...|+..+...++++.|..+|+++.+. .|+. ...++..+...++..+|.+++++.+... +-+...+......|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 345666667778888888888888876 3553 4457777777788888888888887653 3366677777777888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.++++.|..+.+++.... +-+..+|..|..+|.+.|+++.|+..++.+.-
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888888764 44566888888888888888888888877654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.017 Score=59.87 Aligned_cols=182 Identities=14% Similarity=0.035 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369 (592)
Q Consensus 290 pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll 369 (592)
|+...+...+.+......-..+..++.+..+. -......-..-.+...|+++.|+..++.++..- +-|..-.....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45555555555544443333333333333321 122233333444557899999999999988753 33566666777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007695 370 RSFAQCGDVRGAGQITNIMRIEEFQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448 (592)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~ 448 (592)
..+.+.++..+|.+.++.+.... |+ ....-.+..+|.+.|++.+|..+++......+ -|...|..+..+|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCch
Confidence 88999999999999999998774 54 67777889999999999999999999888644 4888999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 449 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
.++..-..+. +...|+++.|..++....+.
T Consensus 425 ~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARAEG------------------YALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHh
Confidence 8887666554 56678888888888887765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.6e-05 Score=48.18 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 007695 538 DDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570 (592)
Q Consensus 538 ~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 570 (592)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888999999999999999999998888887
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00038 Score=72.48 Aligned_cols=123 Identities=16% Similarity=0.147 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNEN--GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 253 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
.+.+......+++.+....+++.+..++.+.... ....-..|.+++|+.|.+.|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3556667778888888888888888888888765 22222345568999999999999999999888888999999999
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQC 375 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~ 375 (592)
|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988888877777778888777777766
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0031 Score=56.28 Aligned_cols=124 Identities=18% Similarity=0.076 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHH
Q 007695 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPG---PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPF--KIQVSLC 509 (592)
Q Consensus 435 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~Li 509 (592)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344343 3566666666666665542 111 223333445666667777777777776665432221 2333456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007695 510 DMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562 (592)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~ 562 (592)
..+...|++++|+..++..... ...+..+......|...|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666777777777777554322 22344555666777777777777777765
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.017 Score=64.31 Aligned_cols=165 Identities=10% Similarity=0.034 Sum_probs=91.1
Q ss_pred CCcchHHHHHHHHccc-ccCCchhHHHHHHhhcCC---CHhhHHHHHHHHH-hhCHHHHHHHHHHHhhhCCCCCCHHHHH
Q 007695 187 ITGKCKLITDKILSLE-KEEDPSPLLAEWKELLQP---SRIDWINLLDRLR-EQNTQLYFKVAELVLSEESFQTNVRDYS 261 (592)
Q Consensus 187 ~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~~p---~~~t~~~lL~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~y~ 261 (592)
++++-......|-.+| ...+...|.+-|+.+.+- +...+......++ ..+++.+....-..-+......-...|.
T Consensus 487 ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~ 566 (1238)
T KOG1127|consen 487 LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWV 566 (1238)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhh
Confidence 3444444445555555 344777777777776433 3334444444443 3345544444221111111111111233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHH
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI--MAYVN 339 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li--~a~~~ 339 (592)
.+.-.|.+.++...|..-|+...+..++ |...|..|..+|..+|.+..|.++|++.... .|+. +|.... -.-+.
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECD 642 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHH
Confidence 3444566677777777777777765433 6777888888888888888888888777653 3332 232222 22345
Q ss_pred cCCchHHHHHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMIT 355 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~ 355 (592)
.|.+.+|+..+.....
T Consensus 643 ~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIY 658 (1238)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 6777777777766543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.065 Score=51.02 Aligned_cols=152 Identities=17% Similarity=0.102 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH
Q 007695 271 NCLEDAERILKKMNEN---G-IVPDIVT-STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~---g-~~pd~~~-~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 345 (592)
.+.++.++++..+... | ..++..+ |..++-+....|+.+.|...++.+..+= +-+..+-..-..-+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4556666666665432 2 3344332 3344445555666666666666655441 2222222222222333456666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|.++|+.+++.+ +.|.++|..=+...-..|+--+|.+-+....+.- ..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 666666666554 3355555544444444555555555555554442 44556666666666666666666655555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0022 Score=66.60 Aligned_cols=126 Identities=15% Similarity=0.206 Sum_probs=105.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
...|+..+...++++.|..+|+++.+.. |+. ...+++.+...++-.+|.+++++..+.. +.+....+.-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3456666777899999999999999873 554 4458888888999999999999998653 5577777888888999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
.++++.|+.+.+++.... +-+-.+|..|..+|.+.|+++.|+..++.+.-.
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999853 335669999999999999999999999988743
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0047 Score=55.10 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 007695 335 MAYVNAGQPKLGMSLVDMMITSGIERS--EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~ 412 (592)
..+...|++++|...|+........++ ......|...+...|++++|...++..... ......+......|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 444445555555555555544331111 112223344444555555555555432211 1122334444455555555
Q ss_pred HHHHHHHHH
Q 007695 413 PDQARSNFD 421 (592)
Q Consensus 413 ~~~A~~lf~ 421 (592)
.++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555555544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=54.75 Aligned_cols=78 Identities=14% Similarity=0.303 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGI-VPDIVTSTVLVHMYSKAG--------NLDRAKEAFESLRSHGFQPDKKVYN 331 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~~~~Li~~~~~~g--------~~~~A~~~~~~m~~~g~~pd~~t~~ 331 (592)
...|..|...+++.....+|+.+++.|+ .|++.+|+.++...++.. ++-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666777777777777777777 677777777777666532 2334555666666666666666666
Q ss_pred HHHHHHH
Q 007695 332 SMIMAYV 338 (592)
Q Consensus 332 ~li~a~~ 338 (592)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 6665554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=68.18 Aligned_cols=124 Identities=11% Similarity=-0.053 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS--GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 322 g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
+.+.+......+++.+....+.+.+..++.+.... ....-..|..++++.|...|..+.+..+++.=...|+=||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567777778888887777888888888877764 2323345666888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~ 445 (592)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887776666667777666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0027 Score=52.57 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKN--------LLDKALNLLLELEKDGFEPGPATYTV 472 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~t~~~li~a~~~~g--------~~~~A~~l~~~m~~~g~~p~~~ty~~ 472 (592)
..|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. .+-+.+.+|+.|...+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555666666666666666666 666666666666555432 23445666677776677777777777
Q ss_pred HHHHHHH
Q 007695 473 LVDWLGR 479 (592)
Q Consensus 473 li~~~~~ 479 (592)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.23 Score=52.19 Aligned_cols=356 Identities=12% Similarity=0.013 Sum_probs=216.3
Q ss_pred HHHHHHhhcccccCCCCCCCCcchHHH-HHHHHcccccCCchhHHHHHHhh--cCCC-HhhHHHHHHHH-HhhCHHHHHH
Q 007695 168 VAEKIHERGEMILPEEPKPITGKCKLI-TDKILSLEKEEDPSPLLAEWKEL--LQPS-RIDWINLLDRL-REQNTQLYFK 242 (592)
Q Consensus 168 ~~~~~~ea~~~f~~~~~~~~~~~~~~~-~~~l~~~~~~g~~~~A~~~~~~~--~~p~-~~t~~~lL~~~-~~~~~~~~~~ 242 (592)
..|+...|+..| -.++.++|....+ .++..++.+.|++.+|++--.+- +.|+ .-.|+..-.++ ..++.+++..
T Consensus 14 s~~d~~~ai~~~--t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLF--TEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHH--HHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 367888899988 3345555543333 34444455899999998766544 5565 45577776666 7788999998
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHCC---CCCCHHHHHHHHHHHHHc----------C
Q 007695 243 VAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA---ERILKKMNENG---IVPDIVTSTVLVHMYSKA----------G 306 (592)
Q Consensus 243 ~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A---~~l~~~m~~~g---~~pd~~~~~~Li~~~~~~----------g 306 (592)
.+..-+... +.|...++.|..++......... -.++..+...- .......|..++..+-+. .
T Consensus 92 ay~~GL~~d--~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 92 AYSEGLEKD--PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHhhcC--CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 887766432 44666688888777221111000 01111111100 000111233333332221 0
Q ss_pred CHHHHHHHHHH-----HHhCC-------CCC----------------------CHHHHHHHHHHHHHcCCchHHHHHHHH
Q 007695 307 NLDRAKEAFES-----LRSHG-------FQP----------------------DKKVYNSMIMAYVNAGQPKLGMSLVDM 352 (592)
Q Consensus 307 ~~~~A~~~~~~-----m~~~g-------~~p----------------------d~~t~~~li~a~~~~g~~~~A~~l~~~ 352 (592)
.+..|.-.+.. +...| ..| -..-...+.++.-+..++..|++.+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11111111110 00001 111 012345677777788888899999988
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE-------SCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 353 m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
..+.. -+..-++....+|...|.+..+........+.|- -... .+..+..+|.+.++++.|...|.+...
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 88765 3555566777788888888887777766665541 1222 223344567777889999999888666
Q ss_pred cCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 007695 426 LGHKPDDRCTA-------------------------SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL 480 (592)
Q Consensus 426 ~g~~pd~~t~~-------------------------~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 480 (592)
....||..+-. .-...+.+.|++..|+..|.++++.. +-|...|....-+|.+.
T Consensus 327 e~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKL 405 (539)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Confidence 44444443211 11345677899999999999998876 55678999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 481 g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
|.+..|+.-.+..++.... ....|.-=..++.-..++++|.+.|++..+.+
T Consensus 406 ~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999988888876432 34455555555666678999999999887763
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.35 Score=53.89 Aligned_cols=226 Identities=14% Similarity=0.070 Sum_probs=158.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCch
Q 007695 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMY--SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~ 344 (592)
....+++..|.+...++.+. .||.. |...+.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567889999988887765 35554 34444444 5789999999999888766534 8889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HH
Q 007695 345 LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD----------PD 414 (592)
Q Consensus 345 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~----------~~ 414 (592)
+|..+|+..... .|+......+..+|.+-+.+.+-.++--++.+. ++-+...+=++++.+.+.-. ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999864 567888889999999998887655555444443 24455666666666655321 33
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 415 QARSNFDYMIRLG-HKPDDRCTASMIAAYGKKNLLDKALNLLLE-LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGK 492 (592)
Q Consensus 415 ~A~~lf~~m~~~g-~~pd~~t~~~li~a~~~~g~~~~A~~l~~~-m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 492 (592)
-|.+.++.+.+.+ ..-+..-.-.-.......|.+++|+.++.. ..+.-..-+...-+--+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5666777776643 221222222223345667889999999943 33333334455556677888889999999999999
Q ss_pred HHhcCCC
Q 007695 493 ISELGEA 499 (592)
Q Consensus 493 m~~~g~~ 499 (592)
+...+..
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 9888755
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.039 Score=61.64 Aligned_cols=181 Identities=13% Similarity=0.106 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~ 457 (592)
...++..|-+..+.. +.-...|..|...|+...+...|...|++..+.... |..........|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 555665555555443 222567888888888888888888888888775432 566777888888888899888887332
Q ss_pred HHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 458 LEKDGFEPGPATYT--VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535 (592)
Q Consensus 458 m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 535 (592)
.-+.. +.....++ ..--.|...++...+..-|+...+..+. |...|..+..+|.++|++..|.++|.+.... .|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 22211 11111122 2333456678888888888888877666 7888889999999999999999999887653 22
Q ss_pred CHHHHHHH--HHHHHhCCCHHHHHHHHHHHHH
Q 007695 536 GPDDFERI--INGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 536 ~~~~~~~l--i~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+ ..|... ....+..|.+.+|+..++....
T Consensus 628 ~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 L-SKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred H-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 223332 2334567888888888877653
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.22 Score=51.27 Aligned_cols=351 Identities=14% Similarity=0.141 Sum_probs=184.4
Q ss_pred ccCCchhHHHHHHhhcC---CC------HhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHH--HHHHcC
Q 007695 203 KEEDPSPLLAEWKELLQ---PS------RIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLID--AHAKEN 271 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~---p~------~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~--~~~~~g 271 (592)
+.+++.+|.++|.+..+ .+ .+.-+.+|+++-..+.+.....+....+..|-.+ |-.|.. .+.+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~----~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSA----YLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhh
Confidence 67777888877776621 11 2334566667766666655555554444433222 223322 235667
Q ss_pred CHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHH
Q 007695 272 CLEDAERILKKMNEN--GIVP------------DIVTSTVLVHMYSKAGNLDRAKEAFESLRSH----GFQPDKKVYNSM 333 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~--g~~p------------d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~~t~~~l 333 (592)
.+++|.+.+..-..+ +..| |...=+..++++...|.+.+++.+++++... ....+..+||.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777777665554 2222 1222255667777788888887777776533 233677777764
Q ss_pred HHHHHHc--------CCc-------hHHHHHHHHHHHC------CCCCCHHHHH--------------------------
Q 007695 334 IMAYVNA--------GQP-------KLGMSLVDMMITS------GIERSEEIYL-------------------------- 366 (592)
Q Consensus 334 i~a~~~~--------g~~-------~~A~~l~~~m~~~------g~~p~~~t~~-------------------------- 366 (592)
+-.+.+. ... +-+.-+.++|... .+.|-...+.
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 4443321 111 1111111222111 1112111111
Q ss_pred ------------HHHHHHHhCCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 367 ------------ALLRSFAQCGDVRGAGQITNIMRIEEFQ----PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430 (592)
Q Consensus 367 ------------~Ll~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p 430 (592)
.+...+.+ +.+++..+.+.+....+. .=..+|..++....+.++...|.+.+.-+....+..
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~ 331 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRI 331 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 11122222 333443333333222111 113456666677777777777766666554421110
Q ss_pred -------------------CHHHHHH------------------------HHH---HHHhcCC-HHHHHHHHHHHHHCCC
Q 007695 431 -------------------DDRCTAS------------------------MIA---AYGKKNL-LDKALNLLLELEKDGF 463 (592)
Q Consensus 431 -------------------d~~t~~~------------------------li~---a~~~~g~-~~~A~~l~~~m~~~g~ 463 (592)
|...|+. ++. -+-+.|. -++|+++++...+.
T Consensus 332 svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f-- 409 (549)
T PF07079_consen 332 SVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF-- 409 (549)
T ss_pred hhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--
Confidence 1111111 111 1122333 66777777777663
Q ss_pred CCC-HHH----HHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHH--HHHcCCHHHHHHHHHHHH
Q 007695 464 EPG-PAT----YTVLVDWLGR---LQLINEAEQLLGKISELGEAP----PFKIQVSLCDM--YARAGIEKKALQALGFLE 529 (592)
Q Consensus 464 ~p~-~~t----y~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p----~~~~~~~Li~~--~~~~g~~~~A~~~~~~m~ 529 (592)
.+. ... +..+=..|.. ...+.+-..+-+-+.+.|+.| +...-|.|.++ +..+|++.++.-.-..+.
T Consensus 410 t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 410 TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 232 222 2222233332 233455555555566777765 34455556554 457899999987766665
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 530 AKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 530 ~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
+ +.|++.+|..+.-++....++++|..++..+
T Consensus 490 ~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 490 K--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred H--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5 6789999999999999999999999999876
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0038 Score=49.52 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
+..+...+...|++++|...|+...+.. +.+...+..+..++...+++++|.+.|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445555666666677776666665542 1233555556666666666666666666665543 3333455666666666
Q ss_pred cCCchHHHHHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMIT 355 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~ 355 (592)
.|+++.|...+.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666655543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0086 Score=50.78 Aligned_cols=98 Identities=13% Similarity=0.041 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG--FQPDKKVYNSMI 334 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~li 334 (592)
++..+...+.+.|++++|.+.|..+...... .....+..+..++.+.|+++.|...|+.+.... .+....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455556666677777777777776654211 113345556666677777777777777666431 011134555666
Q ss_pred HHHHHcCCchHHHHHHHHHHHC
Q 007695 335 MAYVNAGQPKLGMSLVDMMITS 356 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~ 356 (592)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666777777666666665
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0049 Score=48.87 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=5.8
Q ss_pred HHHHHcCCHHHHHHHH
Q 007695 405 EAYGQAGDPDQARSNF 420 (592)
Q Consensus 405 ~~~~~~g~~~~A~~lf 420 (592)
..+...|+++.|...+
T Consensus 76 ~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 76 LAYYKLGKYEEALEAY 91 (100)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3333333333333333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00036 Score=43.79 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~~g~ 568 (592)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 578888888888888888888888887764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00028 Score=44.32 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENG 287 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g 287 (592)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.012 Score=49.79 Aligned_cols=93 Identities=17% Similarity=0.124 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPD----KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE--RSEEIYLALLR 370 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~Ll~ 370 (592)
.+...+.+.|++++|...|..+.... |+ ...+..+..++.+.|+++.|...|+.+...... .....+..+..
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444444555555555555444321 11 223333444444444445555444444432111 11233344444
Q ss_pred HHHhCCCHHHHHHHHHHHHHc
Q 007695 371 SFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~ 391 (592)
++.+.|+.++|...++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0088 Score=55.76 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 325 PDKKVYNSMIMAYVNA-----GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 325 pd~~t~~~li~a~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
.|..+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.||+.+=+ |.+- |....
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n~f 108 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRNFF 108 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cccHH
Confidence 4555555555555432 4455555556666666666666666666655543 2111 10000
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~ 447 (592)
..... - --.+-+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 109 Q~~F~-h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFM-H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhc-c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00000 0 011334455666666666666666666666666655544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.031 Score=51.40 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD--IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
....|..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..... +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 444577788888889999999999999887543332 4678888899999999999999999888753 3356677777
Q ss_pred HHHHHHcCCchHHH
Q 007695 334 IMAYVNAGQPKLGM 347 (592)
Q Consensus 334 i~a~~~~g~~~~A~ 347 (592)
...|...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77887777754443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0034 Score=58.43 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 359 ERSEEIYLALLRSFAQ-----CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDR 433 (592)
Q Consensus 359 ~p~~~t~~~Ll~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ 433 (592)
.-|..+|..++..|.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3477888888888765 46788888888888888988999999888887654 2211 111222211
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007695 434 CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482 (592)
Q Consensus 434 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 482 (592)
.- .-.+-+-|++++++|...|+-||..|+..+++.+++.+.
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 123456789999999999999999999999999988776
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.084 Score=52.85 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=52.8
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCHH-H
Q 007695 438 MIAAYGKK-NLLDKALNLLLELEKD----GFEPG--PATYTVLVDWLGRLQLINEAEQLLGKISELGEA-----PPFK-I 504 (592)
Q Consensus 438 li~a~~~~-g~~~~A~~l~~~m~~~----g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-~ 504 (592)
+...|... |++++|+..|.+..+. + .+. ..++..+...+.+.|++++|..+|+++...... .+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 33455555 7788888777775432 2 111 245566677777888888888888877654322 1121 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
+...+-++...|+...|.+.|+.....
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233344566677788888877777654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.15 Score=49.78 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTS---TVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~---~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
.....+.+.|++++|.+.|+.+...-..+ .... -.+..+|.+.+++++|...|++..+.--.....-|...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34445566788888888888887753222 2222 3455677778888888888888775521111223333333332
Q ss_pred HcCCchHHHHHHHHHHHCC-CCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 339 NAGQPKLGMSLVDMMITSG-IERS-------EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g-~~p~-------~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
....- ...+....... ...| ..++..+++-|-.+.-..+|...+..+... =...--.+...|.+.
T Consensus 116 ~~~~~---~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~~ 188 (243)
T PRK10866 116 NMALD---DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTKR 188 (243)
T ss_pred hhhcc---hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHc
Confidence 10000 00000000000 0000 012233333333344444555444444321 011112445567777
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 411 GDPDQARSNFDYMIRL--GHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~--g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
|.+..|..-|+.+..+ +..........++.+|...|..++|......+
T Consensus 189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7777777777777764 23334455566677777777777776666554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.21 Score=48.76 Aligned_cols=183 Identities=16% Similarity=0.089 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES---CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM 438 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~l 438 (592)
...+-.....+...|++++|...|+.+.... +-+... .-.++.+|.+.++++.|...|++..+..+.-...-|...
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 3333334445566778888888887777653 222222 234567777888888888888887775443333344444
Q ss_pred HHHHHh--c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007695 439 IAAYGK--K---------------NL---LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498 (592)
Q Consensus 439 i~a~~~--~---------------g~---~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 498 (592)
+.+.+. . .| ..+|+..|+.+++. -|+ ..-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~-- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR-- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH--
Confidence 444331 1 11 12344444444442 233 22344444444444321
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAK--KEQMGPDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 499 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
=...-..+...|.+.|.+..|..-++.+.+. +.+..+.....++.+|...|..++|.++...+.
T Consensus 174 --la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111225667789999999999999988874 122234566778899999999999988776654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.098 Score=52.35 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHc--CC-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCH
Q 007695 399 SCTLLVEAYGQA-GDPDQARSNFDYMIRL--GH-KPD--DRCTASMIAAYGKKNLLDKALNLLLELEKDGF-----EPGP 467 (592)
Q Consensus 399 ~~~~Li~~~~~~-g~~~~A~~lf~~m~~~--g~-~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-----~p~~ 467 (592)
++..+...|-.. |+++.|.+.|++.... .. .+. ..++..+...+.+.|++++|..+|++....-. +.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455667677 8999999999877652 11 111 34566777889999999999999999876532 2223
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCC--HHHHHHHHHHHH
Q 007695 468 A-TYTVLVDWLGRLQLINEAEQLLGKISEL--GEAPP--FKIQVSLCDMYA 513 (592)
Q Consensus 468 ~-ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~~~~~Li~~~~ 513 (592)
. .|...+-++...|++..|...+++.... ++..+ ..+...|+.+|-
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 2 3444555777789999999999998754 23322 345666677664
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.018 Score=59.69 Aligned_cols=91 Identities=14% Similarity=-0.069 Sum_probs=65.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 439 IAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518 (592)
Q Consensus 439 i~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~ 518 (592)
...+...|++++|+.+|.+.++.. +-+...|..+..+|...|++++|...++++...... +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 344566778888888888877643 234566777777778888888888888887776543 566777777778888888
Q ss_pred HHHHHHHHHHHHc
Q 007695 519 KKALQALGFLEAK 531 (592)
Q Consensus 519 ~~A~~~~~~m~~~ 531 (592)
++|...|++....
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777764
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.51 Score=47.91 Aligned_cols=108 Identities=14% Similarity=0.037 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 433 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
.+.+..|.-+...|+...|.++-.+. + -|+...|...+.+++..+++++..++-.. +-++.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 34555666777788887777776654 2 37888888888888888888887776432 11346678888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560 (592)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~ 560 (592)
.+.|+..+|..+...+. +..-+..|.+.|++.+|.+.-
T Consensus 248 ~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence 88888888888776521 345677888888888887653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.002 Score=51.49 Aligned_cols=81 Identities=20% Similarity=0.152 Sum_probs=45.8
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 480 LQLINEAEQLLGKISELGEA-PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQR 558 (592)
Q Consensus 480 ~g~~~~A~~l~~~m~~~g~~-p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~ 558 (592)
.|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. ...+. .+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666677777766655432 2334444567777777777777777766 22111 123333344666777777777777
Q ss_pred HHHH
Q 007695 559 VHGL 562 (592)
Q Consensus 559 l~~~ 562 (592)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.017 Score=57.73 Aligned_cols=129 Identities=12% Similarity=0.158 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN-AGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 372 (592)
+|..+++..-+.+..+.|..+|.+..+.+ .-+..+|......-.. .++.+.|..+|+...+. +..+...+...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444444444445555554444321 1112222222222111 23333345555444443 233444444444455
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPT---LESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.+.++.+.|..+|+..... +.++ ...|...+..=.+.|+++.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555544432 1111 23555555555555666655555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.024 Score=58.70 Aligned_cols=92 Identities=9% Similarity=0.010 Sum_probs=65.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++.+... +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 445566777888888887777654 4456677777777777788888877777777653 22566677777777777777
Q ss_pred HHHHHHHHHHHHcC
Q 007695 379 RGAGQITNIMRIEE 392 (592)
Q Consensus 379 ~~A~~~~~~m~~~g 392 (592)
++|...|+.....+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.04 Score=50.62 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD--KKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 355 (592)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555555543321111 23444444455555555555555554444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.029 Score=49.91 Aligned_cols=92 Identities=7% Similarity=-0.021 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g 341 (592)
.+...+...|++++|.++|+.+....+. +..-|..|.-++-..|++++|+..|....... +.|...+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 4444455667777777777766664322 44445556666666677777777776666554 345666666666666677
Q ss_pred CchHHHHHHHHHHH
Q 007695 342 QPKLGMSLVDMMIT 355 (592)
Q Consensus 342 ~~~~A~~l~~~m~~ 355 (592)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 77766666666554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.028 Score=50.01 Aligned_cols=87 Identities=15% Similarity=0.006 Sum_probs=42.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 007695 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555 (592)
Q Consensus 476 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~ 555 (592)
-+...|++++|.++|+.+....+. +..-|..|..+|...|++.+|+..|......+ +-++..+..+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHH
Confidence 344445555555555554443333 44444455555555555555555555544442 2244444445555555555555
Q ss_pred HHHHHHHHH
Q 007695 556 AQRVHGLME 564 (592)
Q Consensus 556 A~~l~~~m~ 564 (592)
|.+.|+..+
T Consensus 122 A~~aF~~Ai 130 (157)
T PRK15363 122 AIKALKAVV 130 (157)
T ss_pred HHHHHHHHH
Confidence 555555444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.036 Score=55.42 Aligned_cols=129 Identities=13% Similarity=0.050 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ-CGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
.+|..+++..-+.+..+.|..+|.+.++.+ ..+..+|......-.+ .++.+.|.++|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888889999998888543 3345555555555333 56677789999888866 36677888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 407 YGQAGDPDQARSNFDYMIRLGHKPDD----RCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~~pd~----~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
+.+.++.+.|..+|+..... + |.. ..|...+.-=.+.|+.+.+..+.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999888764 2 333 4778788777888888888888888776
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.028 Score=51.42 Aligned_cols=61 Identities=11% Similarity=-0.056 Sum_probs=24.8
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIER--SEEIYLALLRSFAQCGDVRGAGQITNIMRI 390 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~ 390 (592)
|..+...+...|++++|+..|++.......+ ...++..+...|...|++++|...+.....
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333344444444444444444443321111 112344444444444444444444444443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.032 Score=51.06 Aligned_cols=81 Identities=12% Similarity=-0.016 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVP--DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 334 (592)
...|..+...+...|++++|...|+........+ ...+|..+...|...|++++|...|+...... +....+++.+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445566666666677777777777766542222 12356666667777777777777776666542 22334444555
Q ss_pred HHHH
Q 007695 335 MAYV 338 (592)
Q Consensus 335 ~a~~ 338 (592)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.022 Score=55.47 Aligned_cols=91 Identities=13% Similarity=0.028 Sum_probs=44.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 007695 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 478 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~ 557 (592)
.+.+++.+|...|.+.+..... |...|..=..+|.+.|.++.|.+=.+.....+ +-...+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 3444555555555555554333 44444445555555555555555544444331 112334555555555555555555
Q ss_pred HHHHHHHHCCCCCCH
Q 007695 558 RVHGLMEAQGFAASE 572 (592)
Q Consensus 558 ~l~~~m~~~g~~pd~ 572 (592)
+.|++.++ +.|+.
T Consensus 170 ~aykKaLe--ldP~N 182 (304)
T KOG0553|consen 170 EAYKKALE--LDPDN 182 (304)
T ss_pred HHHHhhhc--cCCCc
Confidence 55555443 34544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.094 Score=44.88 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=42.7
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHH
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITSGIERS--EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP---TLESCTLLVEAYG 408 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~Li~~~~ 408 (592)
..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++...... +. +......+..++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 3444455555555555555555554332 2234444555555555555555555554431 11 1122222233445
Q ss_pred HcCCHHHHHHHHHHHH
Q 007695 409 QAGDPDQARSNFDYMI 424 (592)
Q Consensus 409 ~~g~~~~A~~lf~~m~ 424 (592)
..|+.++|...+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.58 E-value=1 Score=45.68 Aligned_cols=108 Identities=21% Similarity=0.159 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 478 (592)
+.+.-|.-+...|+...|.++-.+.. + ||..-|-..|.+++..++|++...+... +-.+.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44445666777888888888766663 2 7888899999999999999887765432 123477888999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 479 RLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALG 526 (592)
Q Consensus 479 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~ 526 (592)
+.|+..+|..+..++ . +..-+.+|.++|++.+|.+.--
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 999999988887762 1 2456778889999999877643
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.21 Score=54.31 Aligned_cols=61 Identities=23% Similarity=0.138 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 363 ~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
..|..+.-.+...|++++|...+++....+ |+...|..+...|...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444455555555555555443 3445555555555555555555555555444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.29 Score=49.88 Aligned_cols=261 Identities=14% Similarity=0.007 Sum_probs=135.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC-----CCCH--HHHHHHHHH
Q 007695 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH--GF-----QPDK--KVYNSMIMA 336 (592)
Q Consensus 266 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--g~-----~pd~--~t~~~li~a 336 (592)
.+.+..++..|+..+....+.+.. ++.-|..=...+...|++++|.--.+.-.+. |+ .++. .....+|.+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 445556666777777766665433 3444555555555566666655444333321 10 1110 011122222
Q ss_pred HHHcCCc-----hHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 337 YVNAGQP-----KLGMSLVDMMITSGI-ERSEEIYLAL-LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 337 ~~~~g~~-----~~A~~l~~~m~~~g~-~p~~~t~~~L-l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
.....+. ..++..++....... +|...++..+ ..++.-.|++++|.++--...+.. ..+......-..++.-
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccccc
Confidence 2111111 112222222222111 2333344333 244566778888887777766554 2333333222334445
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHH---HHHH----------HHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 007695 410 AGDPDQARSNFDYMIRLGHKPDDRCT---ASMI----------AAYGKKNLLDKALNLLLELEKD---GFEPGPATYTVL 473 (592)
Q Consensus 410 ~g~~~~A~~lf~~m~~~g~~pd~~t~---~~li----------~a~~~~g~~~~A~~l~~~m~~~---g~~p~~~ty~~l 473 (592)
.++.+.|...|++....+ |+...- ..+. .-..+.|.+..|...|.+.+.. +..|+...|...
T Consensus 216 ~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 677788888888776643 332211 1111 2235678888888888877653 456667777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 474 VDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 474 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..+..+.|++.+|..--++..+.... -...|..-..++...+++++|.+-++...+.
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77778888888888777776653211 1122233334555667777777777766553
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0098 Score=45.06 Aligned_cols=63 Identities=25% Similarity=0.384 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
.+.|++++|.++|+.+...... +...+..+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3567777777777777665322 5666666777777777777777777777655 4554444333
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.36 Score=52.55 Aligned_cols=14 Identities=7% Similarity=-0.076 Sum_probs=6.5
Q ss_pred CCCHHHHHHHHHHH
Q 007695 324 QPDKKVYNSMIMAY 337 (592)
Q Consensus 324 ~pd~~t~~~li~a~ 337 (592)
+.|...|..++++.
T Consensus 334 ~~~~~Ay~~~lrg~ 347 (517)
T PRK10153 334 PHQGAALTLFYQAH 347 (517)
T ss_pred CCCHHHHHHHHHHH
Confidence 34444555444443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.7 Score=47.24 Aligned_cols=304 Identities=14% Similarity=0.132 Sum_probs=155.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----------HHHHcCCHHHHHHHHHHHHhCCC
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVH----------MYSKAGNLDRAKEAFESLRSHGF 323 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~----------~~~~~g~~~~A~~~~~~m~~~g~ 323 (592)
.|.+..|..|.......-.++.|+..|-+.... |.+.....|-. .-+-.|.+++|.++|-+|.++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 577888988888888888888888888766442 22211111111 1122478889999888877542
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHH----------------HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH--
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDM----------------MITSGIERSEEIYLALLRSFAQCGDVRGAGQIT-- 385 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~----------------m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~-- 385 (592)
..|..+.+.|++-.+.++++. |-+. ..+...|......|...|+.+.-.+.+
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~ 834 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYR 834 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence 223333344444333333322 1110 011222333344444444433222211
Q ss_pred ----HHHH--HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 386 ----NIMR--IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 386 ----~~m~--~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
..+. ...++-+....-.+..++.+.|.-++|.+.|-+--. | ...+.+|...+++.+|.++-++..
T Consensus 835 le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 835 LELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111 112455666777788888888888888777654322 2 135667888888888887776542
Q ss_pred HCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCHH-----HHHHH-HHHH----
Q 007695 460 KDGFEPGPATY--------------TVLVDWLGRLQLINEAEQLLGKISELG---EAPPFK-----IQVSL-CDMY---- 512 (592)
Q Consensus 460 ~~g~~p~~~ty--------------~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~-----~~~~L-i~~~---- 512 (592)
- |...|. .--|..+.+.|+.-+|.+++.+|.+.. ..|-.. +..+| +.-+
T Consensus 906 l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~i 981 (1189)
T KOG2041|consen 906 L----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTI 981 (1189)
T ss_pred c----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222221 112334556666666667776665331 122211 11111 1111
Q ss_pred ------HHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHC-CCCCCH-HHH
Q 007695 513 ------ARAGIEKKALQALGFLEA-------KKEQMGPDDFERIING--LLAGGFLQDAQRVHGLMEAQ-GFAASE-RLK 575 (592)
Q Consensus 513 ------~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~a--~~~~g~~~~A~~l~~~m~~~-g~~pd~-~~~ 575 (592)
-++|..++|..+++...- .+.......|..+|.+ ....|..+.|++.--.+.+. .+-|.. .+.
T Consensus 982 k~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiyS 1061 (1189)
T KOG2041|consen 982 KELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYS 1061 (1189)
T ss_pred HHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHH
Confidence 134666666665543211 1122234455555544 45678888888865555433 345555 333
Q ss_pred HHHHhhhhh
Q 007695 576 VALISSQTF 584 (592)
Q Consensus 576 ~~l~~~~~~ 584 (592)
.+-+++|..
T Consensus 1062 llALaaca~ 1070 (1189)
T KOG2041|consen 1062 LLALAACAV 1070 (1189)
T ss_pred HHHHHHhhh
Confidence 333444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.5 Score=44.62 Aligned_cols=261 Identities=18% Similarity=0.120 Sum_probs=166.6
Q ss_pred CCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007695 255 TNVRDYSKLIDA--HAKENCLEDAERILKKMNENGIVPDIVTSTVLVH----MYSKAGNLDRAKEAFESLRSHGFQPDKK 328 (592)
Q Consensus 255 p~~~~y~~Li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~----~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 328 (592)
.|....-.|+.+ ..-.|+++.|.+-|+.|.. |..|-..=++ ..-+.|+.+.|.++-+..-... +.-..
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~W 189 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPW 189 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCch
Confidence 343334444443 3447999999999999987 4444333222 3346788888888887776542 33456
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSG-IERSEEI--YLALLRSFAQ---CGDVRGAGQITNIMRIEEFQPTL-ESCT 401 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g-~~p~~~t--~~~Ll~~~~~---~g~~~~A~~~~~~m~~~g~~~~~-~~~~ 401 (592)
.+.+.+...|..|+++.|+++++.-.... +.++..- -..|+.+-.. ..+...|...-.+..+ +.||. ..-.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHH
Confidence 88899999999999999999998876643 3444322 2233322211 1234455554444443 35553 2333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPG-PATYTVLVDWLGR 479 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~p~-~~ty~~li~~~~~ 479 (592)
.-..++.+.|++.++-.+++.+-+..+.|+... +..+.+.|+ .++.-+++..+. .++|| ......+..+...
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAld 341 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALD 341 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHh
Confidence 446788999999999999999998777776432 223445555 344444444332 35565 4666677788888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc
Q 007695 480 LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA-GIEKKALQALGFLEAK 531 (592)
Q Consensus 480 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~-g~~~~A~~~~~~m~~~ 531 (592)
.|++..|..--+.... ..|....|..|.+.-... |+-.++...+-+....
T Consensus 342 a~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 342 AGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 8998887776665554 456777787777765544 9999999888877654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.019 Score=43.06 Aligned_cols=57 Identities=14% Similarity=0.050 Sum_probs=37.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 508 LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 508 Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+...+...|++++|...|+.+.... +-++..|..+..++...|++++|...|+++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455667777777777777776653 33566667777777777777777777777664
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.059 Score=52.60 Aligned_cols=101 Identities=20% Similarity=0.194 Sum_probs=69.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHH
Q 007695 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLG 346 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A 346 (592)
+.+.++|.+|+..|.+.++... -|.+.|..=..+|++.|.++.|.+-.+...... +....+|..|-.+|...|++.+|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 4567778888888887777532 266677777777888888877777777766543 33455777777777778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 347 MSLVDMMITSGIERSEEIYLALLRS 371 (592)
Q Consensus 347 ~~l~~~m~~~g~~p~~~t~~~Ll~~ 371 (592)
++.|++.++ +.|+..+|-.=+..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 777777765 45666666544443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.04 Score=49.03 Aligned_cols=74 Identities=20% Similarity=0.198 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----HCCCCCCHHHHHH
Q 007695 503 KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME-----AQGFAASERLKVA 577 (592)
Q Consensus 503 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~-----~~g~~pd~~~~~~ 577 (592)
.+...++..+...|+++.|..+.+.+... .+.+...|..+|.+|...|+..+|+++|+++. +.|+.|+..+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l 141 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL 141 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence 45666777888899999999999988887 45578889999999999999999999988775 3499999855443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=2.7 Score=45.85 Aligned_cols=107 Identities=8% Similarity=0.066 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
.++.+...++....++.|.+.|..-.. . ...+.++.+..++++...+-..+. -|....-.|..++.
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHH
Confidence 467777777777777777777765321 1 134555555555555544444443 34455566777777
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m 388 (592)
..|.-++|.+.|-+- +. | ...+..|...++|.+|.++-+..
T Consensus 864 svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred hhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777666443 11 1 23455666667777766665443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.27 Score=42.06 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=24.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 267 HAKENCLEDAERILKKMNENGIVPD--IVTSTVLVHMYSKAGNLDRAKEAFESLRS 320 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 320 (592)
+-..|+.++|+.+|++....|+... ...+-.+...+...|++++|..+|+....
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344555555555555555444322 12233344444444555555555544443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.029 Score=42.42 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.|++++|.++|+.+.... +-+...+..+..+|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444443332 22333334444444444444444444444433
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.95 Score=42.77 Aligned_cols=171 Identities=16% Similarity=0.142 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007695 367 ALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444 (592)
Q Consensus 367 ~Ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~ 444 (592)
.....+...|++.+|...|+.+....- +--..+.-.++.++.+.|+++.|...|+.....-+.-....+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 344455666777777777777765521 112345556677777777777777777776664332222223322222221
Q ss_pred cC-------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007695 445 KN-------------LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM 511 (592)
Q Consensus 445 ~g-------------~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~ 511 (592)
.. ...+|...| ..++.-|-......+|...+..+.+. =...--.+...
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~---------------~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEF---------------EELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHH---------------HHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHH---------------HHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 11 122333333 33444444445555666555555432 11222235677
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCCHHHHH
Q 007695 512 YARAGIEKKALQALGFLEAKKEQMG---PDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~a~~~~g~~~~A~ 557 (592)
|.+.|.+..|..-++.+.+. .+-+ ......++.+|.+.|..+.|.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88999999999999888875 2222 234566788888888887543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.029 Score=42.08 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=27.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320 (592)
Q Consensus 265 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 320 (592)
..+.+.|++++|...|+.+.+.... +...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555554311 444455555555555555555555555543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.043 Score=41.62 Aligned_cols=61 Identities=23% Similarity=0.196 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 007695 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG-DPDQARSNFDYMI 424 (592)
Q Consensus 363 ~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~lf~~m~ 424 (592)
.+|..+...+...|++++|...|++..+.. +.+...|..+..+|...| ++++|+..|++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444444444444444443 233444444444444444 3444444444443
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.044 Score=41.55 Aligned_cols=64 Identities=9% Similarity=0.007 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Q 007695 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG-FLQDAQRVHGLMEA 565 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g-~~~~A~~l~~~m~~ 565 (592)
+..+|..+...+...|++++|...|++..+.+ +-++..|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566666666777777777777777666653 334556666666777776 56777777666554
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.84 Score=46.67 Aligned_cols=264 Identities=13% Similarity=0.007 Sum_probs=157.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
-..+.+..++..|+..+....+.+ +.++.-|..-...+...+++++|.--.+.-+..... ....+.-.-+++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHH
Confidence 344556777788888888877764 445556666666777777777776555544432110 111233333333333333
Q ss_pred HHHHHHHHH------------H---HHcCC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 007695 379 RGAGQITNI------------M---RIEEF-QPTLESCTLL-VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA- 440 (592)
Q Consensus 379 ~~A~~~~~~------------m---~~~g~-~~~~~~~~~L-i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~- 440 (592)
.+|...++. . ..... +|...+|..+ ..++.-.|+++.|..+-....+... ...+...+.
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg 210 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRG 210 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcc
Confidence 333333221 1 11111 2333344333 3456678889988888777666322 223333333
Q ss_pred -HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHH----------HHHHcCCHHHHHHHHHHHHhc---CCCCCHH
Q 007695 441 -AYGKKNLLDKALNLLLELEKDGFEPGPATYTV---LVD----------WLGRLQLINEAEQLLGKISEL---GEAPPFK 503 (592)
Q Consensus 441 -a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~---li~----------~~~~~g~~~~A~~l~~~m~~~---g~~p~~~ 503 (592)
++-..++.+.|...|++-+.. .|+...-.+ ... -..+.|++..|.+.|.+.+.. +..|+..
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 344567889999999887663 354322211 111 235779999999999998764 3456777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 007695 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAA 570 (592)
Q Consensus 504 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 570 (592)
.|........+.|+..+|+.-.+.....+. .-...|..-..++...++|++|.+-|++..+..-.+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~ 354 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDC 354 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 788888888999999999998888765421 112233444556667799999999998877654333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.46 Score=45.64 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIM 388 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m 388 (592)
+.+++.+.-.|.+.-...++.+.++...+.++.....|.+.-.+.|+.+.|...|+..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444444444444444444433334444444444444444444444444433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.3 Score=41.90 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=25.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 266 AHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320 (592)
Q Consensus 266 ~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 320 (592)
.+...|++.+|.+.|+.+...... --....-.++.++.+.|+++.|...|+...+
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555543111 0122233444555555555555555555543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.47 Score=46.68 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG---DVRGAGQITNIMRIEEFQPTLESC 400 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~ 400 (592)
+-|...|-.|...|.+.|+.+.|...|....+.. ..|...+..+..++.... ...++..+|+++...+ +.|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4566677777777777777777777777766642 335555555555544332 2456677777777665 5566666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
..|...+...|++.+|...|+.|...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66777777777777777777777764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=1.4 Score=40.18 Aligned_cols=101 Identities=16% Similarity=0.050 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHH
Q 007695 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA-PPFKIQVSL 508 (592)
Q Consensus 430 pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~L 508 (592)
|+...-..+..+....|+..+|...|.+....-+.-|......+.++....+++..|...++.+.+.+.. -++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 3444444444555555555555555555443333344444555555555555555555555554443210 012223334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 007695 509 CDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~ 530 (592)
...|...|.+..|...|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4455555555555555555544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.6 Score=39.86 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCCHHHHHHH
Q 007695 290 PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-ERSEEIYLAL 368 (592)
Q Consensus 290 pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~L 368 (592)
|++..-..|..+....|+..+|...|++...--+..|....-.+.++....+++..|...++.+.+... .-++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 444444455555555555555555555554433334444445555555555555555555555544320 0112233344
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH
Q 007695 369 LRSFAQCGDVRGAGQITNIMRI 390 (592)
Q Consensus 369 l~~~~~~g~~~~A~~~~~~m~~ 390 (592)
.+.|...|.+.+|..-|+....
T Consensus 167 aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH
Confidence 4455555555555555554443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.27 Score=48.44 Aligned_cols=98 Identities=9% Similarity=-0.008 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPP--FKIQVSLCDMYARAGIEKKALQALGFLEAKKE--QMGPDDFERII 544 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li 544 (592)
.|...+..+.+.|++++|...|+.+.+.-.... ...+..+..+|...|++++|...|+.+..... ...++.+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444455666666666666665432211 24555666667777777777777777665311 11234455556
Q ss_pred HHHHhCCCHHHHHHHHHHHHHC
Q 007695 545 NGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 545 ~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
..+...|+.++|.++|+...+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666677777777777776654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.66 E-value=4.5 Score=44.63 Aligned_cols=318 Identities=13% Similarity=0.096 Sum_probs=176.5
Q ss_pred ccCCchhHHHHHHhhcCCCHhhHHHHHH--HH--Hhh---CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 203 KEEDPSPLLAEWKELLQPSRIDWINLLD--RL--REQ---NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLED 275 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~~p~~~t~~~lL~--~~--~~~---~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~ 275 (592)
..+.+..|+++-+-+..|.... ..++. +. ..+ ..+...+.+..-++.. . ....+|..+..-....|+.+.
T Consensus 449 ~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~Ay~~GR~~L 525 (829)
T KOG2280|consen 449 DRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRAYQEGRFEL 525 (829)
T ss_pred hcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHHHhcCcHHH
Confidence 6778888888877665554322 11222 21 111 1233444444433332 2 333468888888888999999
Q ss_pred HHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 007695 276 AERILKKMNENGIV----PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 276 A~~l~~~m~~~g~~----pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+... .+...|...+ .+...|..+|.
T Consensus 526 A~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~ 596 (829)
T KOG2280|consen 526 ARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYR 596 (829)
T ss_pred HHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHH
Confidence 99888753222111 12223455566667777777777776666642 1222222222 23355666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH-HHHH----HcCCCCCHHHHHHHHHHHHHcCCH----------HHH
Q 007695 352 MMITSGIERSEEIYLALLRSFAQCGDVRGAGQIT-NIMR----IEEFQPTLESCTLLVEAYGQAGDP----------DQA 416 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~-~~m~----~~g~~~~~~~~~~Li~~~~~~g~~----------~~A 416 (592)
+..... |..+ +-..|....+...+-.+. +... ..+..|+ .....+.+.+.... .+-
T Consensus 597 ~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kL 667 (829)
T KOG2280|consen 597 QFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKL 667 (829)
T ss_pred HHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 554421 1111 112222222222211111 1100 1121222 22233344443331 122
Q ss_pred HHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 417 RSNFDYMIR-LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 417 ~~lf~~m~~-~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
..++..+.. .|......+.+--+.-+...|+..+|.++-.+.+ -||...|---+.+++..+++++-+++-+...
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk- 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK- 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-
Confidence 223333333 2334445566666777888888888888777663 5888888888889999999988888766554
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560 (592)
Q Consensus 496 ~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~ 560 (592)
++.-|.-++..|.+.|+.++|.+++-+... +.-...+|.+.|++.+|.++-
T Consensus 743 -----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 743 -----SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred -----CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 234466678889999999999988765522 225678888899988887754
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.3 Score=43.82 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.+.+++.++.-.|+.++|.+.+++|...
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3456777777788888888888888765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.2 Score=50.90 Aligned_cols=133 Identities=16% Similarity=-0.027 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCC-CCH
Q 007695 433 RCTASMIAAYGKKNLLDKALNLLLELE----KDGFE-PGPATYTVLVDWLGRLQLINEAEQLLGKIS----ELGEA-PPF 502 (592)
Q Consensus 433 ~t~~~li~a~~~~g~~~~A~~l~~~m~----~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~----~~g~~-p~~ 502 (592)
.+|..+-..|.-.|+++.|+...+.=. +.|-+ .....+..+..++.-.|+++.|.+.|+... +.|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345666666667788888876554321 22321 123456667777777788888887777543 33322 234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 503 KIQVSLCDMYARAGIEKKALQALGFLE----AKKEQM-GPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 503 ~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~~~~~-~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
.+..+|.+.|.-..++++|+.++.+-. +.+... ....+.+|..+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 566677778877778888887765422 221111 233566788888888888888877665543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.19 Score=43.42 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 007695 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYTVLVDWL 477 (592)
Q Consensus 429 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~ 477 (592)
.|+..+..+++.+|+.+|++..|+++.+...+. +++.+..++..|+..+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344455555555555555555555555544433 4444444444444433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.29 Score=48.21 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRSHG--FQPDKKVYNSM 333 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~t~~~l 333 (592)
|...+....+.|++++|...|+.+.+.- |+ ...+..+...|...|++++|...|..+.+.- -+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4444444455577777777777776642 22 2345566667777777777777777776431 01123344445
Q ss_pred HHHHHHcCCchHHHHHHHHHHHC
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITS 356 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~ 356 (592)
...+...|+.++|..+|+.+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566667777777777666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.82 Score=44.98 Aligned_cols=99 Identities=19% Similarity=0.034 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 007695 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL---QLINEAEQLLGKISELGEAPPFKIQVS 507 (592)
Q Consensus 431 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~~~~~ 507 (592)
|...|-.|-.+|...|+++.|..-|.+..+.. .+|...+..+..++... ....++..+++++...... |..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44555555555555555555555555544431 12333333333333222 1234455555555554433 4455555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 508 LCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 508 Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555555555555555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.13 Score=45.68 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 367 ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 367 ~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
.++..+...|+++.|..+...+.... +.|...|..+|.+|...|+...|.++|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444555555555555554443 344445555555555555555555555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.23 Score=42.87 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 007695 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDRCTASMIAAY 442 (592)
Q Consensus 392 g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~t~~~li~a~ 442 (592)
.+.|+..+..+++.+|+..|++..|.++.+...+. ++.-+..+|..|+.=+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45678888888888888888888888888887773 6666777787777644
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.01 E-value=4.3 Score=41.90 Aligned_cols=32 Identities=19% Similarity=-0.004 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 430 pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
.|-.-+.+++.++.-.|+.++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34445556666666666666666666666553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.18 Score=38.58 Aligned_cols=55 Identities=15% Similarity=0.040 Sum_probs=28.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 511 MYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 511 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.|.+.+++++|.++++.+...+ +.++..|......+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555542 224444555555555555555555555555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=3.9 Score=39.55 Aligned_cols=133 Identities=10% Similarity=-0.014 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV---- 474 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li---- 474 (592)
..+.++..+.-.|.+.-....+++.++....-+......+.+.-.+.||.+.|...|++..+..-+.|..+++.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666667777777777777776655677777777777788888888888888766543334443443333
Q ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 475 -DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 475 -~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..+.-.+++..|...+.++...+.. ++...|.-.-+..-.|+...|.+..+.|....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455567788888888887766544 45545544444445688888999888887753
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.17 Score=38.71 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=33.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 265 DAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 265 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
..|.+.++++.|.++++.+...+.. +...|.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666666666666666665322 4555555666666666666666666666554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.66 E-value=10 Score=44.23 Aligned_cols=101 Identities=17% Similarity=0.080 Sum_probs=51.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHH
Q 007695 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGP--ATYTVLVDWLGRLQLIN 484 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~ 484 (592)
+...+.+++|--.|+..-+ ..-.+.+|..+|+|.+|+.+..+|... -+. .+-..|+.-+...++.-
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 3344555555555554322 112455666667777666666655321 111 11244555566666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 527 (592)
+|-++..+.... ..-.+..|++...+++|.++...
T Consensus 1017 eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred hHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 666666554331 11223345555566666666443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.52 Score=45.73 Aligned_cols=118 Identities=17% Similarity=0.268 Sum_probs=70.2
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007695 254 QTNVRDYSKLIDAHAK-----ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKK 328 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 328 (592)
+-|-.+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+..-. |. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-H
Confidence 4455566666655543 244555556666666777777777777666655433211 11 1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV-RGAGQITNIMRI 390 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~-~~A~~~~~~m~~ 390 (592)
.+....--|- .+-+-+++++++|...|+.||..+-..|++++.+.+.. .+..++.--|.+
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 1111111111 12345788899999999999999999999999887763 344555444543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.29 Score=47.40 Aligned_cols=106 Identities=19% Similarity=0.286 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 324 QPDKKVYNSMIMAYVNA-----GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 398 (592)
+.|..+|-+++..+... +.++-....++.|.+.|+.-|..+|+.||+.+-+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 44666776666666543 4555666666777777777777777777766544221 1110
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~ 448 (592)
.+....--|= .+-+-+++++++|..+|+.||-.+-..+++++.+.|..
T Consensus 127 vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 127 VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111111111 12234677888888888888888888888888777653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.53 E-value=3.2 Score=44.87 Aligned_cols=89 Identities=15% Similarity=0.123 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---------
Q 007695 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGP--------- 537 (592)
Q Consensus 467 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--------- 537 (592)
..+...+..-+-+...+.-|.++|..|-+ ...++......+++.+|..+-+...+. .++.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 34455555555556666677777776643 124566677778888887777665542 1121
Q ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 538 --DDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 538 --~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
+-|...-.+|.+.|+-++|.++++++-..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 12444557788888888888888877544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.43 E-value=5.9 Score=39.46 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=58.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHHcC-CHHHHHHHHHHHHhC--------CCCCCH--
Q 007695 267 HAKENCLEDAERILKKMNENG--IVPDIV------TSTVLVHMYSKAG-NLDRAKEAFESLRSH--------GFQPDK-- 327 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g--~~pd~~------~~~~Li~~~~~~g-~~~~A~~~~~~m~~~--------g~~pd~-- 327 (592)
..+.|+++.|..++.+....- ..|+.. .|+.-... .+.+ +++.|..++++..+. ...|+.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 356788888888888776532 223221 23322222 2334 666666655544321 112222
Q ss_pred ---HHHHHHHHHHHHcCCch---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 328 ---KVYNSMIMAYVNAGQPK---LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 328 ---~t~~~li~a~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
.++..++.+|...+..+ +|..+++.+.... .-...++..-+..+.+.++.+.+.+++..|...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23444555555544433 3334444443321 112344444455555555555555555555544
|
It is also involved in sporulation []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=6.1 Score=42.85 Aligned_cols=216 Identities=16% Similarity=0.145 Sum_probs=119.4
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-----H
Q 007695 260 YSKLIDAHAKENCL--EDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN-----S 332 (592)
Q Consensus 260 y~~Li~~~~~~g~~--~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-----~ 332 (592)
++..=.+|.+-++. -+...-+++++++|-.|+... +...++-.|++.+|.++|.+--..+ .-...|+ .
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD 675 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFD 675 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHH
Confidence 34444556555443 333444567788888788763 4455666777888877775432110 0111222 1
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH------HHHcCC---CCCHHHHH
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITS--GIERSEEIYLALLRSFAQCGDVRGAGQITNI------MRIEEF---QPTLESCT 401 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~------m~~~g~---~~~~~~~~ 401 (592)
+..-|...|..++-..+.++=.+. .++ --.+....+..+|+.++|..+.-+ +...+- ..+..+..
T Consensus 676 ~aQE~~~~g~~~eKKmL~RKRA~WAr~~k----ePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~ 751 (1081)
T KOG1538|consen 676 YAQEFLGSGDPKEKKMLIRKRADWARNIK----EPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLL 751 (1081)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHhhhcC----CcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHH
Confidence 233445555555554444432221 111 112334455566666666544221 111111 22345555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HH
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA-----------TY 470 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~-----------ty 470 (592)
.+...+.+...+.-|-++|..|-. ...+++.....+++++|..+-+...+ ..||.. -|
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhH
Confidence 555556667778888999988854 23467778889999999998887655 334431 23
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 471 TVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 471 ~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
.-.-.+|.++|+-.+|.++++++..
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3344566777777777777777654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.3 Score=39.78 Aligned_cols=87 Identities=13% Similarity=-0.026 Sum_probs=47.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 007695 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA 381 (592)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A 381 (592)
+-..|++++|..+|.-+...+ .-|..-|..|..+|-..+++++|+..|......+. -|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 345566666666666655443 23444455555555556666666666655544332 2444444555556666666666
Q ss_pred HHHHHHHHH
Q 007695 382 GQITNIMRI 390 (592)
Q Consensus 382 ~~~~~~m~~ 390 (592)
...|.....
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666555554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.47 Score=42.61 Aligned_cols=86 Identities=14% Similarity=-0.033 Sum_probs=43.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522 (592)
Q Consensus 443 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 522 (592)
-+.|++++|..+|.-+...+ .-+..-+..|..++-..++++.|...|......+.. |+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 44566666666665554432 112333344444455555566666665554443332 3333334455555556666666
Q ss_pred HHHHHHHH
Q 007695 523 QALGFLEA 530 (592)
Q Consensus 523 ~~~~~m~~ 530 (592)
..|+....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 65555544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.17 Score=39.36 Aligned_cols=62 Identities=11% Similarity=-0.013 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 503 KIQVSLCDMYARAGIEKKALQALGFLEAKK--EQMG----PDDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 503 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~--~~~~----~~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
.+++.+...|...|++++|+..|++..+.. ..++ ..++..+...|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355566666666666666666666544320 1111 2245556666666777777766666544
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.15 E-value=6.6 Score=39.45 Aligned_cols=138 Identities=12% Similarity=0.085 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCC--
Q 007695 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQ--AG----DPDQARSNFDYMIRLGH---KPDDRCTASMIAAYGKKNL-- 447 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~--~g----~~~~A~~lf~~m~~~g~---~pd~~t~~~li~a~~~~g~-- 447 (592)
+....+++.+.+.|+..+..+|-+....... .. ...+|..+|+.|+++.+ .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455667777777776666555443222222 12 24567777888877532 4556666666544 2232
Q ss_pred --HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 448 --LDKALNLLLELEKDGFEPGP--ATYTVLVDWLGRLQL--INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIE 518 (592)
Q Consensus 448 --~~~A~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~ 518 (592)
.+.+..+|+.+.+.|+..+. ...+.++..+..... ...+..+++.+.+.|+++....|..+.-...-.+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 34566677777776665443 233333332222222 346777777777777776666666554444333333
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.7 Score=46.28 Aligned_cols=132 Identities=18% Similarity=0.112 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 397 LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW 476 (592)
Q Consensus 397 ~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~ 476 (592)
....+.++..+-+.|..+.|+.+-.+-.. -.....+.|+++.|.++.++. .+...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 34455666666666666666655443221 122334566666665544322 345566666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 007695 477 LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDA 556 (592)
Q Consensus 477 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A 556 (592)
..+.|+++-|...|++..+ +..|+-.|...|+.+.-.++.+....++. ++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 6666666666666665432 33444556666666666665555554432 44445555555555555
Q ss_pred HHHHH
Q 007695 557 QRVHG 561 (592)
Q Consensus 557 ~~l~~ 561 (592)
.+++.
T Consensus 422 v~lL~ 426 (443)
T PF04053_consen 422 VDLLI 426 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=1.2 Score=46.74 Aligned_cols=66 Identities=11% Similarity=-0.021 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDI----VTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
+.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|++++|+..|++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457778999999999999999999999998885 4553 45899999999999999999999999874
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.88 E-value=2.6 Score=43.73 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHG-FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRS 371 (592)
Q Consensus 293 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 371 (592)
.+|...|+...+..-++.|..+|-++.+.| +.+++..++++|.-++ .|++.-|..+|+--... .+-+..--+-.+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHH
Confidence 345555555555555666666666666555 4455556666665553 34555555555543332 11122222344455
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 372 FAQCGDVRGAGQITNIMRIEEFQPT--LESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+...++-+.|..+|+....+- ..+ ...|..+|.--..-|++..+..+=+.|..
T Consensus 476 Li~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 555566666666665433221 111 34555555555555666555555555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.73 E-value=4.9 Score=36.46 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=15.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCch
Q 007695 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPK 344 (592)
Q Consensus 314 ~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~ 344 (592)
....+.+.+++|+...|..+++.+.+.|++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3333444555555555555555555555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.3 Score=49.69 Aligned_cols=97 Identities=13% Similarity=-0.016 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcC-CCCCH
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKIS----ELGEA-PPFKIQVSLCDMYARAGIEKKALQALGFLE----AKK-EQMGP 537 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~----~~g~~-p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~~-~~~~~ 537 (592)
..|..|-..|.-.|+++.|....+.-. +.|-+ .-...+..|.+++.-.|+++.|.+.++... +.+ .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666666777789999998877532 22322 134577889999999999999999887532 222 22334
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 538 DDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 538 ~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
....+|.+.|.-...+++|+.++++-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 456668888888889999999887643
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.59 E-value=4.7 Score=35.29 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~ 445 (592)
++..+.+.+.......+++.+...+. .+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 34444444455555555555444432 3444444555555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.56 E-value=4.7 Score=40.51 Aligned_cols=126 Identities=11% Similarity=0.105 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cC----CchHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhCCC---
Q 007695 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVN--AG----QPKLGMSLVDMMITSGI---ERSEEIYLALLRSFAQCGD--- 377 (592)
Q Consensus 310 ~A~~~~~~m~~~g~~pd~~t~~~li~a~~~--~g----~~~~A~~l~~~m~~~g~---~p~~~t~~~Ll~~~~~~g~--- 377 (592)
+...+++.|.+.|+..+..+|-+..-.... .. ....|..+|+.|.+... .++..++..++.. ...+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555666666665555444442222222 11 12356666666666431 2334444444433 2222
Q ss_pred -HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 378 -VRGAGQITNIMRIEEFQPTL--ESCTLLVEAYGQAGD--PDQARSNFDYMIRLGHKPDDRCTAS 437 (592)
Q Consensus 378 -~~~A~~~~~~m~~~g~~~~~--~~~~~Li~~~~~~g~--~~~A~~lf~~m~~~g~~pd~~t~~~ 437 (592)
.+.+..+|+.+...|+..+- ...+.++.......+ ..++..+++.+.+.|+++....|..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 24455666666665554432 222222222211111 3456666777777766666555553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.15 Score=39.69 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNEN----GIV-PD-IVTSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~-pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
+|+.+...|...|++++|+..|++..+. |-. |+ ..+++.+..+|...|++++|.+.|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666666666666666665432 111 11 3345556666666666666666665543
|
... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.27 E-value=8.5 Score=37.99 Aligned_cols=52 Identities=15% Similarity=0.207 Sum_probs=24.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
....|++.+|..+|+........ +...--.++.+|...|+++.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34445555555555555443221 23333344555555555555555555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.11 E-value=1.1 Score=44.24 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 007695 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA-----QGFAASERLKV 576 (592)
Q Consensus 502 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~~~ 576 (592)
..++..++..+..+|+.+.+...++++... .+-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 346677788888888888888888888776 344666788888888888888888888877764 48888876666
Q ss_pred HHHhh
Q 007695 577 ALISS 581 (592)
Q Consensus 577 ~l~~~ 581 (592)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 65555
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.10 E-value=5.6 Score=34.78 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=25.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA 305 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~ 305 (592)
..++..+.+.+....+..+++.+...+. .+...++.++..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 3455555555566666666666655542 4555566666666554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.4 Score=46.13 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK----KVYNSMIMAYVNAGQPKLGMSLVDMMIT 355 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~li~a~~~~g~~~~A~~l~~~m~~ 355 (592)
+...|+.+..+|.+.|++++|...|++..+. .|+. .+|..+..+|...|+.++|+..+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555555555555554443 2332 2355555555555555555555555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.7 Score=44.59 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=44.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC-----CCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 265 DAHAKENCLEDAERILKKMNEN-----GIVP---------DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 265 ~~~~~~g~~~~A~~l~~~m~~~-----g~~p---------d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
..|.+.|++..|...|++.... +.++ -..+++.|..+|.+.+++..|++.-+..+..+ ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 4577888899998888886542 1111 11233444444444444444444444444433 3344444
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHH
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMIT 355 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~ 355 (592)
.--..+|...|+++.|...|+++++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4444444444444444444444443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.79 E-value=7.7 Score=35.55 Aligned_cols=189 Identities=17% Similarity=0.083 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 306 GNLDRAKEAFESLRSHGFQ-PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-GIERSEEIYLALLRSFAQCGDVRGAGQ 383 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~g~~-pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~Ll~~~~~~g~~~~A~~ 383 (592)
+....+...+......... .....+......+...+....+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444455555544433211 02345555555555566666665555555431 122334444455555555555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 384 ITNIMRIEEFQPTLESCTLLVE-AYGQAGDPDQARSNFDYMIRLGH--KPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 384 ~~~~m~~~g~~~~~~~~~~Li~-~~~~~g~~~~A~~lf~~m~~~g~--~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
.+.........+ ......... .+...|+++.|...|.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 555555433111 111222222 45555555555555555533111 01122222222233444555555555555444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 461 DGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 461 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
.........+..+...+...+.++.+...+.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 21110234444444444444445555555444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.67 E-value=3.3 Score=44.11 Aligned_cols=156 Identities=12% Similarity=0.118 Sum_probs=82.3
Q ss_pred HHHHHcCCHHHHHHHHHH--HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 265 DAHAKENCLEDAERILKK--MNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 265 ~~~~~~g~~~~A~~l~~~--m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~ 342 (592)
....-+++++.+.++... +.. .+ ...-.+.++..+-+.|..+.|+++-..-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 344456777777666641 111 11 24446667777777777777766643322 23444456677
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 343 PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY 422 (592)
Q Consensus 343 ~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~ 422 (592)
++.|.++.++. .+...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++-+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 77766554332 2566777777777777777777777765442 34555566666776666666655
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007695 423 MIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456 (592)
Q Consensus 423 m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 456 (592)
....|- ++....++...|+.++..+++.
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 554432 4445555566677766666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.40 E-value=2.2 Score=43.71 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=90.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 007695 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 298 Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 377 (592)
-.+.|.+.|++..|...|++.... -. |.+.-+.++... .... -..+++.|.-+|.+.++
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~-~~~~-------k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKK-AEAL-------KLACHLNLAACYLKLKE 272 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHH-HHHH-------HHHHhhHHHHHHHhhhh
Confidence 345778999999999999886632 00 001111111111 1111 23466777788888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCC-HHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK-KNL-LDKALNLL 455 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~-~g~-~~~A~~l~ 455 (592)
+..|....+.....+ +.|+...-.-..+|...|+++.|+..|+++.+. .|+...-+.=|..|.+ ... .+...++|
T Consensus 273 ~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 273 YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777 778888888888888888888888888888874 4555555444444433 233 33446777
Q ss_pred HHHHHC
Q 007695 456 LELEKD 461 (592)
Q Consensus 456 ~~m~~~ 461 (592)
..|...
T Consensus 350 ~~mF~k 355 (397)
T KOG0543|consen 350 ANMFAK 355 (397)
T ss_pred HHHhhc
Confidence 777653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.18 E-value=7.1 Score=33.72 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..+...++.+...|+-+.-.++++.+.+ .-.+++.....+..+|.+.|+..++..++.+.-++|
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344445556666666666666666654 234466666666666666666666666666665554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.93 E-value=12 Score=39.79 Aligned_cols=63 Identities=11% Similarity=0.028 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGE-APPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.+-..+..++-+.|+.++|.+.++++.+... ..+..+...|+.++...+.+.++..++.+-.+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3334455666677777777777777765322 22445666777777777777777777776643
|
The molecular function of this protein is uncertain. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.77 E-value=9.9 Score=34.51 Aligned_cols=133 Identities=14% Similarity=0.043 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH-
Q 007695 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP-DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPAT-YTVLV- 474 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t-y~~li- 474 (592)
..|..-++ +.+.+..++|+.-|.++.+.|..- ..-.-..+.....+.|+...|...|++.-...-.|-..- ...|-
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 34443333 345566777777777777765431 111222233445667777777777777766544443321 11111
Q ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 475 -DWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 475 -~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
-.+...|.+++...-.+-+...+-..-...-.+|.-+-.+.|++.+|...|..+...
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 123556777776666665554433333344456666666778888888887777653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.35 E-value=21 Score=37.39 Aligned_cols=141 Identities=11% Similarity=0.148 Sum_probs=86.9
Q ss_pred HHHHhh-cCC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007695 212 AEWKEL-LQP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI 288 (592)
Q Consensus 212 ~~~~~~-~~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 288 (592)
++-+++ ..| |..+|-.|+.-+ .++.++...+..+++... ++--..+|..-|++-...+++.....+|.+.....+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 444444 244 567799999988 666677777777777644 344445677788887888999999999999887644
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHH---HcCCc------hHHHHHHH
Q 007695 289 VPDIVTSTVLVHMYSKAGNL------DRAKEAFESLRS-HGFQPD-KKVYNSMIMAYV---NAGQP------KLGMSLVD 351 (592)
Q Consensus 289 ~pd~~~~~~Li~~~~~~g~~------~~A~~~~~~m~~-~g~~pd-~~t~~~li~a~~---~~g~~------~~A~~l~~ 351 (592)
+...|..-+..-.+.... ....+.|+-... .++.|- ...|+..+..+- ..|.+ +.....|.
T Consensus 108 --~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 --NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred --cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 466677777655544321 123344444432 344443 345555554442 23443 45666777
Q ss_pred HHHHC
Q 007695 352 MMITS 356 (592)
Q Consensus 352 ~m~~~ 356 (592)
+|+..
T Consensus 186 ral~t 190 (660)
T COG5107 186 RALQT 190 (660)
T ss_pred HHHcC
Confidence 77653
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.05 E-value=6.9 Score=33.71 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=46.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCH
Q 007695 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSE---EIYLALLRSFAQCGDV 378 (592)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~Ll~~~~~~g~~ 378 (592)
.+..|+++.|++.|.+....- +-+...||.-..++.-.|+.++|++=+.+.++..-.-+. ..|..-...|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 345566666666666555432 334556666666666666666666555555542111121 2233333445556666
Q ss_pred HHHHHHHHHHHHcC
Q 007695 379 RGAGQITNIMRIEE 392 (592)
Q Consensus 379 ~~A~~~~~~m~~~g 392 (592)
+.|..=|...-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.90 E-value=12 Score=40.35 Aligned_cols=179 Identities=11% Similarity=-0.000 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHH----cCCch
Q 007695 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG-FQPD-----KKVYNSMIMAYVN----AGQPK 344 (592)
Q Consensus 275 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~pd-----~~t~~~li~a~~~----~g~~~ 344 (592)
-..-+|.-+... +||. +..++....-.||-+.+++.+.+..+.+ +.-. .-.|+.++..++. ....+
T Consensus 175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 334455555543 3333 2345556666677777777766655422 1111 1234444443333 34556
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 345 LGMSLVDMMITSGIERSEEIYL-ALLRSFAQCGDVRGAGQITNIMRIEE---FQPTLESCTLLVEAYGQAGDPDQARSNF 420 (592)
Q Consensus 345 ~A~~l~~~m~~~g~~p~~~t~~-~Ll~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~Li~~~~~~g~~~~A~~lf 420 (592)
.|.+++..+... -|+...|. .-.+.+...|++++|.+.|+...... -+.....+--+.-.+.-..++++|...|
T Consensus 251 ~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 251 EAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 777777777764 34444433 33455666777888887777544211 0223445555666777788888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 007695 421 DYMIRLGHKPDDRCTASMIA-AYGKKNLL-------DKALNLLLELEK 460 (592)
Q Consensus 421 ~~m~~~g~~pd~~t~~~li~-a~~~~g~~-------~~A~~l~~~m~~ 460 (592)
..+.+..- -+..+|.-+.. ++...|+. ++|..+|.+...
T Consensus 329 ~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88887432 23334443333 33455666 788888877643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.84 E-value=16 Score=35.14 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 470 YTVLVDWLGRLQLINEAEQLLGKISELG---EAPPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 470 y~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
|...|-.+....++..|...++.-...+ -.-+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3344444445556666666665532221 112445555666555 455666655553
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.70 E-value=12 Score=39.63 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=92.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
.+..+...-.+.-.+..+ +.||-.+.- ++-+--...-..+|.++|++..+.|- ..+ .+.......-
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAY-ILLAEEeA~Ti~Eae~l~rqAvkAgE----~~l-------g~s~~~~~~g 244 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAY-ILLAEEEASTIVEAEELLRQAVKAGE----ASL-------GKSQFLQHHG 244 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHH-hhcccccccCHHHHHHHHHHHHHHHH----Hhh-------chhhhhhccc
Confidence 344444444444444443 234433222 22233344557888888888766431 111 0100001111
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 488 QLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM-GPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 488 ~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
..++........|-..+-..|..++.+.|+.++|.+.+++|.+..... +......|+.++...+.+.++..++.+-.+-
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 122222233333334455568888889999999999999997643222 3345677999999999999999999987654
Q ss_pred CCCCCH--HHHHHHHhhhhhc
Q 007695 567 GFAASE--RLKVALISSQTFN 585 (592)
Q Consensus 567 g~~pd~--~~~~~l~~~~~~~ 585 (592)
....+. .+..+|+.+...+
T Consensus 325 ~lpkSAti~YTaALLkaRav~ 345 (539)
T PF04184_consen 325 SLPKSATICYTAALLKARAVG 345 (539)
T ss_pred cCCchHHHHHHHHHHHHHhhc
Confidence 444445 4444555544443
|
The molecular function of this protein is uncertain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.24 E-value=14 Score=33.66 Aligned_cols=224 Identities=17% Similarity=0.061 Sum_probs=138.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCchHHH
Q 007695 270 ENCLEDAERILKKMNENGIVP-DIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPDKKVYNSMIMAYVNAGQPKLGM 347 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~li~a~~~~g~~~~A~ 347 (592)
.+.+..+...+.......... ....+......+...+.+..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 456666666666666543221 3566777777788888888888877777642 22445566667777777777788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 348 SLVDMMITSGIERSEEIYLALLR-SFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~t~~~Ll~-~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888777654332 222223333 67788888888888888754221 1233444445555667788888888888877
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 425 RLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 425 ~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
..........+..+-..+...++++.|...+....... |+ ...+..+...+...+..+.+...+......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 74222135666667777777788888888887776632 32 233333333333555566666666655543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.24 E-value=18 Score=34.79 Aligned_cols=205 Identities=17% Similarity=0.143 Sum_probs=103.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
|.--..+|....++++|...+.+..+. ..-|...|.+ ...++.|.-+.+++... +--+..|+--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 334444555566666666655554421 1112211111 12234444444444432 1123455666677777
Q ss_pred cCCHHHHHHHHHHHHH--cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 410 AGDPDQARSNFDYMIR--LGHKPDD--RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINE 485 (592)
Q Consensus 410 ~g~~~~A~~lf~~m~~--~g~~pd~--~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 485 (592)
+|.++.|-..+++.-+ .+..|+. ..|..-+......++...|.. .|..+-+.+.+...+++
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e---------------l~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE---------------LYGKCSRVLVRLEKFTE 168 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH---------------HHHHhhhHhhhhHHhhH
Confidence 7777777666665443 1233332 122222222222333333333 33444455666667766
Q ss_pred HHHHHHHHHhc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhCCCHHHHH
Q 007695 486 AEQLLGKISEL----GEAPP-FKIQVSLCDMYARAGIEKKALQALGFLEAKKE---QMGPDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 486 A~~l~~~m~~~----g~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~a~~~~g~~~~A~ 557 (592)
|-..+.+-... .-.++ ...|...|-.|.-..++..|.+.++.--+.+. .-+..+...|+.+|- .|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHH
Confidence 66555443211 11122 24566667777778899999999987444322 223446777888874 56777665
Q ss_pred HHH
Q 007695 558 RVH 560 (592)
Q Consensus 558 ~l~ 560 (592)
+++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.15 E-value=3.3 Score=40.88 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS-----HGFQPDKKVYNSM 333 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~l 333 (592)
++..++..+...|+++.+...++.+..... -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 566677777777777777777777777632 3677777777777777777777777777654 4666666665555
Q ss_pred HHH
Q 007695 334 IMA 336 (592)
Q Consensus 334 i~a 336 (592)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.93 E-value=6.8 Score=39.24 Aligned_cols=155 Identities=12% Similarity=-0.042 Sum_probs=96.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCc
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK----KVYNSMIMAYVNAGQP 343 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~li~a~~~~g~~ 343 (592)
.-+|++.+|...++++.+. .+.|...+...=.+|.-.|+...-...+++..-.- .+|. .....+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 4467777777778777765 45577777777778888888888777777776331 2333 2223333445567888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT---LESCTLLVEAYGQAGDPDQARSNF 420 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~Li~~~~~~g~~~~A~~lf 420 (592)
++|++.-++..+.+ +-|.....++...+--.|+..++.++..+-...=-..+ ..-|=...-.+...+.++.|+.+|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888877777654 33666677777777777888887776655432100000 111222233445567788888888
Q ss_pred HHHHH
Q 007695 421 DYMIR 425 (592)
Q Consensus 421 ~~m~~ 425 (592)
+.-.-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 75443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.72 E-value=8.1 Score=38.70 Aligned_cols=152 Identities=10% Similarity=-0.090 Sum_probs=96.0
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHH--HHHHHHhcCCHH
Q 007695 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD--RCTAS--MIAAYGKKNLLD 449 (592)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~t~~~--li~a~~~~g~~~ 449 (592)
-.|+..+|-..++++.+.- |.|..+++-.-.+|.-.|+.+.-...++++... -.+|. .+|.. ..-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4566677777777777553 677888888888888888888888888887763 12333 23322 223445678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA---PPFKIQVSLCDMYARAGIEKKALQALG 526 (592)
Q Consensus 450 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p~~~~~~~Li~~~~~~g~~~~A~~~~~ 526 (592)
+|.+.-++..+-+ +.|...-.++...+...|+..++.++..+-...--. .-..-|=...-.+...+.++.|+.+|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888887766543 345556666777777888888888877654432100 011112223334555678888888887
Q ss_pred HH
Q 007695 527 FL 528 (592)
Q Consensus 527 ~m 528 (592)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 53
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.71 E-value=23 Score=35.14 Aligned_cols=144 Identities=9% Similarity=0.148 Sum_probs=80.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
.......|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..+....-.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345567788888888888777553 3344566677777888888888888877765432221222222334444444444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 007695 379 RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL--GHKPDDRCTASMIAAYGKKN 446 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~--g~~pd~~t~~~li~a~~~~g 446 (592)
.+...+-...-.. +-|...-..+...|...|+.+.|.+.+-.+... |.. |...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 4444444333322 235666666667777777777776666555442 222 4444444555444444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.55 E-value=7.2 Score=34.29 Aligned_cols=82 Identities=15% Similarity=-0.003 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 223 IDWINLLDRLREQNTQLYFKVAELVLSEESFQT-NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHM 301 (592)
Q Consensus 223 ~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~ 301 (592)
.-|+.-..++..++...+.+.++.+..+..+.+ ...+.-.|+.+|.+.++++.|...+++..+....---.-|-..+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 334444555555666666666666655544433 2334556667777777777777777777665433222334444444
Q ss_pred HHH
Q 007695 302 YSK 304 (592)
Q Consensus 302 ~~~ 304 (592)
++.
T Consensus 92 L~~ 94 (142)
T PF13512_consen 92 LSY 94 (142)
T ss_pred HHH
Confidence 443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.23 E-value=5.7 Score=38.73 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=11.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
+--|.....+.|+.++|..+|+++.+
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33334444444444444444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=89.13 E-value=36 Score=36.70 Aligned_cols=163 Identities=19% Similarity=0.146 Sum_probs=107.9
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSG-IERSE-----EIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
+..+++...=.|+-+.+++.+.+..+.+ +.-.. -+|...+..++. ..+.+.|.+++..+... -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3455566666788899999888876643 22111 224444444433 45688899999999977 467665
Q ss_pred HHH-HHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 400 CTL-LVEAYGQAGDPDQARSNFDYMIRLG---HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475 (592)
Q Consensus 400 ~~~-Li~~~~~~g~~~~A~~lf~~m~~~g---~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 475 (592)
|.. -...+...|++++|.+.|+...... .+.....+--+.-.+...+++++|...|..+.+.+ .-+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 544 3566778999999999999765421 11233445556777888999999999999998864 223445554443
Q ss_pred -HHHHcCCH-------HHHHHHHHHHHh
Q 007695 476 -WLGRLQLI-------NEAEQLLGKISE 495 (592)
Q Consensus 476 -~~~~~g~~-------~~A~~l~~~m~~ 495 (592)
++...++. ++|..++.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33456766 788888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.54 E-value=33 Score=37.90 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=9.0
Q ss_pred hCCCHHHHHHHHHHHHH
Q 007695 374 QCGDVRGAGQITNIMRI 390 (592)
Q Consensus 374 ~~g~~~~A~~~~~~m~~ 390 (592)
...+.+.|...|+....
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 33455555555555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.45 E-value=7.5 Score=38.60 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=64.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHH
Q 007695 287 GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHG---FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEE 363 (592)
Q Consensus 287 g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ 363 (592)
|.+....+...++..-....+++.+...+-++...- ..|+. +-.+.++.+. .-++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 444455555666666666667777777776665421 11221 1122233332 235667777777777778888888
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEE 392 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g 392 (592)
+++.+|+.+.+.+++.+|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888777777666543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.32 E-value=45 Score=36.83 Aligned_cols=275 Identities=16% Similarity=0.108 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHH----H-HHHcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHHc
Q 007695 273 LEDAERILKKMNENGIVPDIVTSTVLVH----M-YSKAGNLDRAKEAFESLRS-------HGFQPDKKVYNSMIMAYVNA 340 (592)
Q Consensus 273 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~----~-~~~~g~~~~A~~~~~~m~~-------~g~~pd~~t~~~li~a~~~~ 340 (592)
...|.+.++...+.| +...-..+.. + +....|.+.|...|....+ .| +....+-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 467888888888876 3333322222 2 4466789999999998876 44 334666777777764
Q ss_pred C-----CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCC
Q 007695 341 G-----QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ-CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG--QAGD 412 (592)
Q Consensus 341 g-----~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~--~~g~ 412 (592)
. +...|+.++...-+.|. |+...+...+..... ..+...|.++|...-..| .+...-+.+++.... -..+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCC
Confidence 3 55679999998888773 344443333333333 246789999999999888 333333322222222 3347
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HH-----HH--cCCHH
Q 007695 413 PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD-WL-----GR--LQLIN 484 (592)
Q Consensus 413 ~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~-~~-----~~--~g~~~ 484 (592)
...|...+.+.-..| .|....-...+..+.. +.++.+.-.+..+.+.|... ..+-...+. .. .. ..+..
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchh
Confidence 889999999988877 3332222233444444 77777777777776655321 111111111 10 00 12445
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhCCCHHHH
Q 007695 485 EAEQLLGKISELGEAPPFKIQVSLCDMYARA----GIEKKALQALGFLEAKKEQMGPDDFERIINGL----LAGGFLQDA 556 (592)
Q Consensus 485 ~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~----~~~g~~~~A 556 (592)
.+...+.+....| +......|-+.|... .+.+.|...+......+ ....|| +...+ .... +..|
T Consensus 457 ~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~-~~~a 528 (552)
T KOG1550|consen 457 RAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LGYMHEHGEGIKV-LHLA 528 (552)
T ss_pred HHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcch-hHHH
Confidence 5555555555444 444555555554432 24666666666655543 222333 11111 1122 5666
Q ss_pred HHHHHHHHHC
Q 007695 557 QRVHGLMEAQ 566 (592)
Q Consensus 557 ~~l~~~m~~~ 566 (592)
.+++++..+.
T Consensus 529 ~~~~~~~~~~ 538 (552)
T KOG1550|consen 529 KRYYDQASEE 538 (552)
T ss_pred HHHHHHHHhc
Confidence 6666666544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.22 E-value=34 Score=35.26 Aligned_cols=283 Identities=16% Similarity=0.106 Sum_probs=184.6
Q ss_pred ccCCchhHHHHHHhh---cCCCHhhHHHHHHHH---HhhCHHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHHcCCHH
Q 007695 203 KEEDPSPLLAEWKEL---LQPSRIDWINLLDRL---REQNTQLYFKVAELVLSEESFQTNVRD--YSKLIDAHAKENCLE 274 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~---~~p~~~t~~~lL~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~--y~~Li~~~~~~g~~~ 274 (592)
-.|+-..|+++-.+. +..|......||.+- ..|+.+.+.+-++.|+.. |.... ...|.-..-+.|..+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHH
Confidence 678888888887653 556666666677654 567888888888887642 33222 344444455688889
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHH--HHHHHHHHHH---HcCCchHHH
Q 007695 275 DAERILKKMNENGIVP-DIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPDKK--VYNSMIMAYV---NAGQPKLGM 347 (592)
Q Consensus 275 ~A~~l~~~m~~~g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~--t~~~li~a~~---~~g~~~~A~ 347 (592)
.|.++-+..-.. .| -...+...+...|..|+++.|+++.+.-+.. -+.++.. .-..|+.+-. -..+...|.
T Consensus 172 aAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 888888877654 33 3556788999999999999999999887643 2344432 1222332221 123455666
Q ss_pred HHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 007695 348 SLVDMMITSGIERSEE-IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR- 425 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~-t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~- 425 (592)
..-.+..+ +.||-. .-.....++.+.|++.++-.+++.+-+..-.|+ .+. +..+.+.|+ .+..-++...+
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHH
Confidence 65555544 445533 233456788999999999999999988754444 322 223344554 34444443333
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCC
Q 007695 426 LGHKP-DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL-QLINEAEQLLGKISELGEAPP 501 (592)
Q Consensus 426 ~g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~ 501 (592)
...+| +..+...+..+-...|++..|..--+.... ..|....|..|.+.-.-. |+-.++.+.+.+..+..-.|.
T Consensus 322 ~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 322 ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 12344 445666677788888999888776665544 578888888888766544 999999999999887655554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.22 E-value=7.8 Score=37.77 Aligned_cols=97 Identities=21% Similarity=0.162 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KP-DDRCTASMI 439 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~p-d~~t~~~li 439 (592)
.|+..+..| +.|++..|...|....+..- .-....+-.|..++...|+++.|..+|..+.+.-+ .| -..++--+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555444 44557777777776665531 11234455567777777777777777766665321 11 123444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 007695 440 AAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 440 ~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
.+....|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5566666666666666666553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.87 E-value=7 Score=43.75 Aligned_cols=243 Identities=14% Similarity=0.052 Sum_probs=136.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI----MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li----~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
...-+....+...++-|..+-+.-. .+..+...+. +-+.+.|++++|...|-+.+.. +.|. .++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 3456667777777777776654322 2333433444 3445678888888877766543 3332 3455
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK-PDDRCTASMIAAYGKKNLLD 449 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~-pd~~t~~~li~a~~~~g~~~ 449 (592)
-|....++..-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+... .|.. .| ....+..|.+.+-.+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLD 480 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHH
Confidence 56666667777778888888884 456666888899999998888777766554 2321 12 334566677777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 450 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
+|..+-..... +......+ +-..+++++|.+.+..+.-...- .+.+....-+. ....++-..++-+..
T Consensus 481 ~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l---~~l~kyGk~Ll-~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELL---RTLNKYGKILL-EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHH---HHHHHHHHHHH-hhChHHHHHHHHHHH
Confidence 77766654422 33333333 45677888888888766321111 11111111121 234555555544443
Q ss_pred HcCCCCCHHHHHHH-----HHHHHhCCCHHHHHHHHHHHHH
Q 007695 530 AKKEQMGPDDFERI-----INGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 530 ~~~~~~~~~~~~~l-----i~a~~~~g~~~~A~~l~~~m~~ 565 (592)
.....++....... -....-.++++.-...++.|.+
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E 589 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSE 589 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHh
Confidence 32222222222211 1222445677776667776654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=87.64 E-value=41 Score=35.59 Aligned_cols=80 Identities=10% Similarity=-0.098 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528 (592)
Q Consensus 449 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 528 (592)
.+|.++.+...+.+ .-|+.....+..+....++++.|...|++....+.. ...+|......+.-+|+.++|.+.+++.
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444433 234444444444445555555566666555554332 3334444444444556666666655554
Q ss_pred HH
Q 007695 529 EA 530 (592)
Q Consensus 529 ~~ 530 (592)
.+
T Consensus 399 lr 400 (458)
T PRK11906 399 LQ 400 (458)
T ss_pred hc
Confidence 43
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.64 E-value=31 Score=34.23 Aligned_cols=163 Identities=9% Similarity=-0.035 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 398 ESCTLLVEAYGQAGDPD---QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLV 474 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~---~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 474 (592)
.+...++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+.+.+|...-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 34556666776666543 455555555443222 2334444455555677777777777777765211 122333333
Q ss_pred HHH---HHcCCHHHHHHHHHHHHhcCCCCCHH-HHH-HHHHH---HHHcC------CHHHHHHHHHHHHH-cCCCCCHHH
Q 007695 475 DWL---GRLQLINEAEQLLGKISELGEAPPFK-IQV-SLCDM---YARAG------IEKKALQALGFLEA-KKEQMGPDD 539 (592)
Q Consensus 475 ~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~-~Li~~---~~~~g------~~~~A~~~~~~m~~-~~~~~~~~~ 539 (592)
..+ ... ....+...+..+....+.|... ... .++.- ....+ .++....+++.+.. .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 333 332 2344555555555444444443 111 11111 11111 14444444553332 223444443
Q ss_pred HHHH-------HHHHHhCCCHHHHHHHHHHH
Q 007695 540 FERI-------INGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 540 ~~~l-------i~a~~~~g~~~~A~~l~~~m 563 (592)
-.++ ...+.+.+++++|.+.|+--
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2222 34566889999999998753
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.55 E-value=1.6 Score=29.60 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
+..+...|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.74 E-value=19 Score=31.62 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007695 438 MIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
++.+|.+.+++++|...+++.++
T Consensus 53 l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444444444444433
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.63 E-value=2.5 Score=28.64 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=5.7
Q ss_pred HHHcCCHHHHHHHHHH
Q 007695 407 YGQAGDPDQARSNFDY 422 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~ 422 (592)
|...|++++|.++|++
T Consensus 11 ~~~~G~~~~A~~~~~~ 26 (44)
T PF13428_consen 11 YRRLGQPDEAERLLRR 26 (44)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 3333333333333333
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=47 Score=35.16 Aligned_cols=116 Identities=12% Similarity=0.081 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHH---------cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 007695 308 LDRAKEAFESLR-SHGFQPD-KKVYNSMIMAYVN---------AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376 (592)
Q Consensus 308 ~~~A~~~~~~m~-~~g~~pd-~~t~~~li~a~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 376 (592)
.+.|+.+|.+.. ...+.|+ ...|..+..++.. .....+|.++-+...+.+. -|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 456677777766 1222333 3333333333221 1123345555566665542 26666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+++.|...|++....+ +-...+|......+.-+|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6777777777766553 22345555555555666777777777776554
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.34 E-value=13 Score=36.60 Aligned_cols=122 Identities=11% Similarity=0.135 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHH
Q 007695 253 FQTNVRDYSKLIDAHAK-EN-CLEDAERILKKMNE-NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPDKK 328 (592)
Q Consensus 253 ~~p~~~~y~~Li~~~~~-~g-~~~~A~~l~~~m~~-~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~ 328 (592)
+-.|..+...|++.... .+ ....-.++.+.+.. .|-.++..+...++..+++.+++.+-.++++..... +..-|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 44566666666666655 22 22333333343332 244567777778888888888888888888776644 4456778
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHHh
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDM-----MITSGIERSEEIYLALLRSFAQ 374 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~-----m~~~g~~p~~~t~~~Ll~~~~~ 374 (592)
.|..+|......|+..-...+..+ +...++..+...-..+-..+.+
T Consensus 240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 888888888888887766666554 2344566666666665555543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.28 E-value=21 Score=30.85 Aligned_cols=92 Identities=20% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCC
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTL---ESCTLLVEAYGQAGD 412 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~Li~~~~~~g~ 412 (592)
+....|+.+.|++.|.+.+.. .+-....||.-.+++.-.|+.++|+.=+++..+..-..+. .+|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456788999999999888775 3347788999999998899999988888887765323333 334444566778888
Q ss_pred HHHHHHHHHHHHHcCC
Q 007695 413 PDQARSNFDYMIRLGH 428 (592)
Q Consensus 413 ~~~A~~lf~~m~~~g~ 428 (592)
-+.|..=|+..-+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888887766553
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=85.90 E-value=50 Score=34.79 Aligned_cols=275 Identities=15% Similarity=0.135 Sum_probs=144.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--H
Q 007695 267 HAKENCLEDAERILKKMNENGIVPD------IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY--V 338 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~--~ 338 (592)
+-+.+++.+|.++|.+..+.. ..+ ...-+.++++|.. .+.+.....+..+.+. .| ...|-.+..+. -
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 456788899999998886642 212 2223556666654 3455555555555543 22 23444444433 3
Q ss_pred HcCCchHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCHHHH
Q 007695 339 NAGQPKLGMSLVDMMITS--GIER------------SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF----QPTLESC 400 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~--g~~p------------~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~ 400 (592)
+.+++++|.+.+..-.++ +..| |-..=+..+.++...|++.++..+++++...-+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 677888888888776654 3222 111124566778889999999988888876543 3688888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRL---GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWL 477 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~---g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 477 (592)
+.++-+++++ .|-++++. .+-|| |--+|..|.+.=. .++.-.=..+.|....+..++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHH
Confidence 8887777764 44444331 22222 3334444433211 111100012334444444444433
Q ss_pred HHcC--CHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhC
Q 007695 478 GRLQ--LINEAEQLLGKISELGEAPPFK-IQVSLCDMYARAGIEKKALQALGFLEAKKEQM----GPDDFERIINGLLAG 550 (592)
Q Consensus 478 ~~~g--~~~~A~~l~~~m~~~g~~p~~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~a~~~~ 550 (592)
.-.. +..--.+++......-+.|+.. +...|...+.+ +.+++..+.+.+......+ =..+|..++....+.
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~ 311 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ 311 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1222233333333333445543 23344444443 4455555544443321111 123577777777888
Q ss_pred CCHHHHHHHHHHHHH
Q 007695 551 GFLQDAQRVHGLMEA 565 (592)
Q Consensus 551 g~~~~A~~l~~~m~~ 565 (592)
++...|.+.+.-++.
T Consensus 312 ~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 312 VQTEEAKQYLALLKI 326 (549)
T ss_pred HhHHHHHHHHHHHHh
Confidence 888888877776654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.55 E-value=45 Score=33.98 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=35.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320 (592)
Q Consensus 263 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 320 (592)
...+..+.|+++...+........ .++...|.++... ..++++++....+....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356777888888866655555432 2355555555544 78888888888777654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.53 E-value=17 Score=33.40 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPT--LESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 365 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
+..+...|++.|+.+.|.+.|.++...-..+. ...+-.+|....-.+++..+.....+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44444555555555555555555444322221 2333444444444555555544444433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=85.50 E-value=10 Score=34.96 Aligned_cols=59 Identities=19% Similarity=0.199 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHH
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPD--KKVYNSMIMAYVNAGQPKLGMSLVDMM 353 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m 353 (592)
+..+...|++.|+.+.|.+.|.++......+. ...+-.+|....-.+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44445555555555555555555444322222 223344444444455555444444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.37 E-value=2 Score=27.79 Aligned_cols=26 Identities=8% Similarity=-0.130 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888754
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.35 E-value=29 Score=31.61 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=24.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIV-TSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
++.+..++|+.-|..+.+.|..--.. .-..........|+...|...|++.-..
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34445555666666555554331111 1111222334445555555555555443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.07 E-value=39 Score=32.81 Aligned_cols=184 Identities=13% Similarity=0.078 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIV--PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPDKKVYNSMIM 335 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~li~ 335 (592)
.|+.-+. -.+.|++++|.+.|+.+..+.+- -...+--.++.++-+.++++.|...+++.... +-.||+ -|-..|.
T Consensus 37 LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylk 114 (254)
T COG4105 37 LYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLK 114 (254)
T ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHH
Confidence 3444333 45567777777777777654211 12334445556666677777777777666543 223332 3334444
Q ss_pred HHHHc-------CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 336 AYVNA-------GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408 (592)
Q Consensus 336 a~~~~-------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~ 408 (592)
+++.. .+...+...+..+. .++.-|-.+.-...|......+... =...=..+...|.
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~------------~~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~ 178 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFK------------ELVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYL 178 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHH------------HHHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 43322 12222222222221 1122222222222333322222211 0011123455666
Q ss_pred HcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 409 QAGDPDQARSNFDYMIRLGH--KPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 409 ~~g~~~~A~~lf~~m~~~g~--~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
+.|.+..|..-++.|.+.-. .-....+-.+..+|...|..++|...-.-+..
T Consensus 179 kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 179 KRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 77777777777777766411 11123445566667777777776666555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=84.43 E-value=32 Score=31.27 Aligned_cols=27 Identities=4% Similarity=-0.061 Sum_probs=13.4
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007695 422 YMIRLGHKPDDRCTASMIAAYGKKNLL 448 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~~li~a~~~~g~~ 448 (592)
.+...++.|+...|..+|..+.+.|++
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 333444555555555555555555543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=84.32 E-value=48 Score=33.82 Aligned_cols=226 Identities=14% Similarity=0.103 Sum_probs=111.7
Q ss_pred HHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhC
Q 007695 303 SKAGNLDRAKEAFESLRSH--GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMIT----SG-IERSEEIYLALLRSFAQC 375 (592)
Q Consensus 303 ~~~g~~~~A~~~~~~m~~~--g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~Ll~~~~~~ 375 (592)
....+.++|+..+.+-+.+ ...---.+|..+..+.++.|.+++++..--.-++ .. -..-...|..+.+++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777665532 0111234566666777777777666544322111 10 000112333444444444
Q ss_pred CCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcC
Q 007695 376 GDVRGAGQITNIMRIE-EFQP---TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-----KPDDRCTASMIAAYGKKN 446 (592)
Q Consensus 376 g~~~~A~~~~~~m~~~-g~~~---~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-----~pd~~t~~~li~a~~~~g 446 (592)
-++.+++.+-..-... |..+ .-...-++..++.-.+.++++++.|+.....-. ......|..+-+.|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444444333221 1111 112333455666666677777777776655211 112345666677777777
Q ss_pred CHHHHHHHHHHHHHC----CCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHh----cCCCC-CHHHHHHHHHHH
Q 007695 447 LLDKALNLLLELEKD----GFEPGPATYTV-----LVDWLGRLQLINEAEQLLGKISE----LGEAP-PFKIQVSLCDMY 512 (592)
Q Consensus 447 ~~~~A~~l~~~m~~~----g~~p~~~ty~~-----li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~~~~~Li~~~ 512 (592)
|+++|.-+.....+. ++..-...|.. +.-++...|.+-.|.+.-++..+ .|-.+ .......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 777777665554331 32221222322 22345556666666666655443 23221 122334556666
Q ss_pred HHcCCHHHHHHHHHHH
Q 007695 513 ARAGIEKKALQALGFL 528 (592)
Q Consensus 513 ~~~g~~~~A~~~~~~m 528 (592)
...|+.+.|..-++..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 6777777766666555
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=84.15 E-value=27 Score=30.29 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~ 568 (592)
..-++.....|+-++-.+++..+.. +..+++...-.+..+|.+.|+..++-+++++..+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344455555555555555555543 2344555555555566666666666666655555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=83.82 E-value=82 Score=35.52 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 446 NLLDKALNLLLELEKD-GFEPGP--ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522 (592)
Q Consensus 446 g~~~~A~~l~~~m~~~-g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 522 (592)
.+.+.|..++...... ++.+.. .....+.......+...++...+....... .+......-+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 4456677777665433 222222 222333333333322445555555443222 13344444455555777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhhhhhc
Q 007695 523 QALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISSQTFN 585 (592)
Q Consensus 523 ~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~~~~~~~ 585 (592)
..+..|...... ...-.--+..++...|+.++|..+|+..... .++..+++....+
T Consensus 333 ~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa~~Lg 388 (644)
T PRK11619 333 TWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAAQRLG 388 (644)
T ss_pred HHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHHHHcC
Confidence 777776543221 1121223566666678888888777776321 2344555555544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=83.79 E-value=54 Score=33.49 Aligned_cols=127 Identities=13% Similarity=-0.036 Sum_probs=59.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC---C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHH-
Q 007695 367 ALLRSFAQCGDVRGAGQITNIMRIEEF---Q--PTLESCTLLVEAYGQAGDPDQARSNFDYMIR----LGHKPDDRCTA- 436 (592)
Q Consensus 367 ~Ll~~~~~~g~~~~A~~~~~~m~~~g~---~--~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~----~g~~pd~~t~~- 436 (592)
++..++...+.++++++.|+...+... . ....+|..|.+.|.+..++++|.-+..+..+ .++.--...|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344555555556666666655543211 1 1234566666666666666666554443322 12211111121
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 437 ----SMIAAYGKKNLLDKALNLLLELE----KDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKI 493 (592)
Q Consensus 437 ----~li~a~~~~g~~~~A~~l~~~m~----~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m 493 (592)
.|.-++...|..-.|.+.-++.. ..|-.+. .....++.+.|...|+.+.|..-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 23334455555555544444432 2232221 233345555666666666666555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.76 E-value=21 Score=40.25 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERS--EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
....-+..+++...++-|+.+-+.- +..++ ........+.+.+.|++++|...|-+-...- .| ..+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHH
Confidence 4456777788888888888776543 33222 2233444555678899999988877655321 22 235666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 486 (592)
|........-..+++.+.+.|.. +...-+.|+.+|.+.++.++...+.+.-. .|.. ..-....+..|.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 77777788888889999998885 56666779999999999999777776543 3322 11244566677777778887
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528 (592)
Q Consensus 487 ~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 528 (592)
..+-.+... +......+ +-..|++++|++.+..+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 776554432 33444444 44678999999998866
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.62 E-value=49 Score=32.12 Aligned_cols=174 Identities=16% Similarity=0.146 Sum_probs=91.4
Q ss_pred HhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh------
Q 007695 373 AQCGDVRGAGQITNIMRIEE--FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK------ 444 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~------ 444 (592)
.+.|++++|.+.|+.+.... -+-...+.-.++-++.+.++++.|...+++....-+.....-|..-|.+.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 45677777777777776542 0112445555666677777777777777776664332222333333333321
Q ss_pred -cCCHHHH---HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 445 -KNLLDKA---LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520 (592)
Q Consensus 445 -~g~~~~A---~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~ 520 (592)
..|...+ +.-|+.++.. -||.. -...|..-...+... =...=..+.+-|.+.|.+..
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChHH
Confidence 1222223 3333333322 23221 111111111111110 01112345677888888888
Q ss_pred HHHHHHHHHHcCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 521 ALQALGFLEAKKEQMGP---DDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 521 A~~~~~~m~~~~~~~~~---~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
|..-++.|.+. .+-+. ..+-.+..+|...|-.++|.+.-+-+...
T Consensus 186 A~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 186 AINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 88888888875 22222 24556678888888888888777666544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=82.38 E-value=3 Score=26.90 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 007695 295 STVLVHMYSKAGNLDRAKEAFES 317 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~ 317 (592)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=82.14 E-value=56 Score=32.41 Aligned_cols=132 Identities=8% Similarity=-0.026 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 412 DPDQARSNFDYMIR-LGHKPDDRCTASMIAAYGK-KN-LLDKALNLLLELEKD-GFEPGPATYTVLVDWLGRLQLINEAE 487 (592)
Q Consensus 412 ~~~~A~~lf~~m~~-~g~~pd~~t~~~li~a~~~-~g-~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~ 487 (592)
.+.+|+.+|+.... ..+--|......++..... .+ ....-.++.+-+... |-.++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663222 2234466666666666554 21 222333344444333 45677778888888888888888888
Q ss_pred HHHHHHHhc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHH
Q 007695 488 QLLGKISEL-GEAPPFKIQVSLCDMYARAGIEKKALQALGF-----LEAKKEQMGPDDFERI 543 (592)
Q Consensus 488 ~l~~~m~~~-g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~-----m~~~~~~~~~~~~~~l 543 (592)
+++...... +..-|...|..+|......|+..-..++.+. +...+...++..-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 888877655 5556788888888888888888777777653 2334444455443333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 5e-14
Identities = 66/428 (15%), Positives = 132/428 (30%), Gaps = 106/428 (24%)
Query: 166 TEVAEKIHERGEMILPEEPKPITG-KCKLITDKILSLEKEEDPSPLLAEWKELLQPSRID 224
E E ++ +++ E + CK + D S+ +E+ ++ + R+
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 225 WINLLDRLREQNTQLYFKVAELVLSE------ESFQTNVRDYSKLIDAHAKE-NCLEDAE 277
W L + ++ K E VL +T R S + + ++ + L +
Sbjct: 69 WT-----LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 278 RILKKMN----------ENGIVPDIVTSTVLVH-MYSKAGNLDRAKE--AFESLRSHGFQ 324
++ K N ++ VL+ + G+ K A + S+ Q
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV---LGS---GKTWVALDVCLSYKVQ 177
Query: 325 --PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382
D K++ ++N ++++M+ LL R
Sbjct: 178 CKMDFKIF------WLNLKNCNSPETVLEML------------QKLLYQIDPNWTSRSDH 219
Query: 383 QITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442
+RI Q L LL ++ L + A A+
Sbjct: 220 SSNIKLRIHSIQAELR--RLLKS-------KPYENC---LLV-L----LNVQNAKAWNAF 262
Query: 443 --GKKNLL---DKAL----------NLLLELEKDGFEPGPATYTVLVDWLG-RLQ-LINE 485
K LL K + ++ L+ P ++L+ +L R Q L E
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPRE 321
Query: 486 AEQ----LLGKISELGEAPPFKIQVSLCDMYARAGIEK------KALQALGFLEAKK--E 533
L I+E + ++ D + +K +L L E +K +
Sbjct: 322 VLTTNPRRLSIIAES-----IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 534 QMG--PDD 539
++ P
Sbjct: 377 RLSVFPPS 384
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 2e-12
Identities = 81/617 (13%), Positives = 172/617 (27%), Gaps = 173/617 (28%)
Query: 31 QDFSEDLWRTVWEVSNLVLEDMEKARKKEKMKGFLQSDKVKEMSRFAGEIGIRGDMLREL 90
F + V N +D++ + K L +++ + I + + L
Sbjct: 23 SVFEDAF------VDNFDCKDVQ-----DMPKSILSKEEIDHI------IMSKDAVSGTL 65
Query: 91 RFKWAREEMEES---EFYEGL---------ERLRKEANAQEMGEKA-EGKAAAECAEVEE 137
R W +E +F E + ++ E M + + + +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 138 KPKV-ITLPKRHGKIKYKIYGLDLSDP-----------KWTEVAEKIHERGEMILPEEPK 185
K ++ + + K++ + L K + + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVC--LSYKVQCKMDF 182
Query: 186 PI----TGKCK---LITDKILSLEKEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQ 238
I C + + + L + DP+ RI I LR
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKS 240
Query: 239 LYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVL 298
++ LVL NV++ +K +A +C +IL + T
Sbjct: 241 KPYENCLLVLL------NVQN-AKAWNAF-NLSC-----KIL-----------LTTRFKQ 276
Query: 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL------GMSLVDM 352
V + + S PD+ S+++ Y++ L
Sbjct: 277 V---TDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF-QPTLESCTLLVEAYGQAG 411
+I +R + + + + T ++E+
Sbjct: 332 IIA-----------ESIRDG--------------LATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 412 DPDQARSNFDYMIRLGHKPDD----RCTASMIAAYGKKNLLDKALNLLLE---LEKDGFE 464
+P + R FD + P S+I K+ + +N L + +EK E
Sbjct: 367 EPAEYRKMFDRLSVF---PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 465 PGPATYTVLVDWLGRLQLINEAE---QLLGKISELGEAPPFKIQVSLCDMY--------- 512
+ ++ ++ +++L NE ++ + + D Y
Sbjct: 424 STISIPSIYLEL--KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 513 ARAGIEKKA------LQALGFLEAK------------------------KEQMGPDD--F 540
++ FLE K K + +D +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 541 ERIINGLLAGGFLQDAQ 557
ER++N +L FL +
Sbjct: 542 ERLVNAILD--FLPKIE 556
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 4e-08
Identities = 82/582 (14%), Positives = 153/582 (26%), Gaps = 209/582 (35%)
Query: 8 KVVSEMEKGGL-ERMIESASASPSQDFSEDLWRTVWEVSNLVLEDMEKARKKEKMKGFLQ 66
K V +M K L + I+ S R W L ++ ++ ++ L+
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAV--SGTLRLFW-----TLLSKQEEMVQKFVEEVLR 88
Query: 67 SDKVKEMSRFAGEIGIRGDMLRELRFKWAREEM----------------EESEFYEGLER 110
+ MS E R + + R+ + + + L
Sbjct: 89 INYKFLMSPIKTEQ--RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 111 LRKEANAQEMGEKAEGK---AAAECAEVEEKPKVITLPKRHGKIKYKIYGLDLS------ 161
LR N G GK A C K K+ +KI+ L+L
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLS----------YKVQCKMDFKIFWLNLKNCNSPE 196
Query: 162 -------------DPKWTE----------------------VAEKIHERGEMIL-----P 181
DP WT + K +E ++L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 182 EEPKPITGKCK-LIT-------D-----------------------------KILSLEKE 204
+ CK L+T D K L +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 205 EDP------SPL-LAEWKELLQ--PSRID-WINL------------LDRLREQNTQLYF- 241
+ P +P L+ E ++ + D W ++ L+ L + F
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 242 ---------KVAELVLS----------EESFQTNVRDYSKLIDAHAKE------------ 270
+ ++LS + YS L++ KE
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLEL 435
Query: 271 --NCLEDAE---------RILKKMNENGIVPDIVTSTVLVH-MY--SKAGNLDRA---KE 313
+ I K + + ++P + H + + +R +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 314 AFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMM-----ITSGIERSEEIYLAL 368
F R F ++K+ + + L + I + E + A+
Sbjct: 496 VFLDFR---FL-EQKIRHDSTAWNASGSILNT---LQQLKFYKPYICDNDPKYERLVNAI 548
Query: 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410
L + + + T+++RI E + EA+ Q
Sbjct: 549 LDFLPKIEENLICSKYTDLLRI-ALMA--EDEAIFEEAHKQV 587
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.8 bits (148), Expect = 5e-10
Identities = 19/180 (10%), Positives = 52/180 (28%), Gaps = 5/180 (2%)
Query: 249 SEESFQTNVRDYSKLIDAHAKENCLEDAERIL---KKMNENGIVPDIVTSTVLVHMYSKA 305
S+ + + L A +L + + + ++ +++
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ-PKLGMSLVDMMITSGIERSEEI 364
G ++ G PD Y + + Q ++ M G++
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 365 YLALLRSFAQCGDVRGAGQITNIMRIE-EFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423
LL + ++ ++ + + P + + LL + Y + G + +
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 2e-09
Identities = 29/271 (10%), Positives = 76/271 (28%), Gaps = 4/271 (1%)
Query: 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALL 369
R + L+ + K + ++ L D + EE LL
Sbjct: 40 RMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLL 99
Query: 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDY---MIRL 426
+ + + + + + A +
Sbjct: 100 QEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK 159
Query: 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL-QLINE 485
+++ + ++ + + +L ++ G P +Y + +GR Q
Sbjct: 160 RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT 219
Query: 486 AEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545
E+ L ++S+ G L RA + K + + P + +++
Sbjct: 220 IERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
Query: 546 GLLAGGFLQDAQRVHGLMEAQGFAASERLKV 576
+ A ++H ++ ++L +
Sbjct: 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQLHM 310
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 592 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.64 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.62 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.6 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.59 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.59 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.51 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.5 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.5 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.49 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.49 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.48 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.48 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.48 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.48 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.48 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.47 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.46 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.4 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.37 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.34 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.33 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.3 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.3 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.27 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.25 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.21 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.18 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.18 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.17 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.07 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.07 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.06 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.05 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.03 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.03 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.94 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.81 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.8 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.77 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.77 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.77 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.76 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.73 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.73 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.69 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.68 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.66 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.65 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.64 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.64 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.64 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.62 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.61 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.59 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.59 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.58 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.56 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.56 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.55 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.54 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.49 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.48 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.48 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.43 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.43 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.38 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.38 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.36 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.35 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.35 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.35 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.32 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.29 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.29 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.27 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.26 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.24 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.23 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.22 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.22 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.18 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.16 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.16 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.15 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.15 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.15 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.14 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.13 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.1 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.09 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.08 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.08 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.07 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.07 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.06 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.05 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.02 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.01 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.0 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.95 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.95 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.94 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.93 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.93 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.92 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.91 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.91 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.9 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.9 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.89 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.88 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.88 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.88 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.87 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.85 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.7 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.69 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.68 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.65 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.61 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.6 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.59 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.55 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.51 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.5 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.49 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.49 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.48 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.47 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.46 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.4 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.36 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.29 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.27 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.26 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.26 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.1 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.05 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.03 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.99 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.95 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.94 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.9 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.88 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.83 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.56 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.44 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.39 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.36 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.49 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.46 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.13 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.12 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.02 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.02 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.0 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.96 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.81 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 94.19 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.78 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.74 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.14 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.07 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 92.99 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.39 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.96 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.78 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.61 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 90.85 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 90.55 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.25 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 89.68 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 88.62 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 88.31 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.26 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.21 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 87.32 | |
| 2xl1_A | 26 | Arginine attenuator peptide; translation, antibiot | 85.14 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 84.45 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 83.63 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.95 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 82.75 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.51 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-30 Score=281.79 Aligned_cols=392 Identities=10% Similarity=-0.098 Sum_probs=259.2
Q ss_pred HHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH-HhhCHHHHHHHHH
Q 007695 170 EKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL-REQNTQLYFKVAE 245 (592)
Q Consensus 170 ~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~-~~~~~~~~~~~~~ 245 (592)
|++.+|...|. ......|+.. ....+...+ +.|++++|+.+|+++ ..++..+|+.+..++ ..++.+.+..+++
T Consensus 98 g~~~~A~~~~~--~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 98 QQYKCAAFVGE--KVLDITGNPN-DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp TCHHHHHHHHH--HHHHHHCCHH-HHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred cCchHHHHHHH--HHHhhCCCch-HHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence 45666666661 1111222222 223344444 788888888888877 567777788777777 5566777776665
Q ss_pred HHhhhC--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------------------
Q 007695 246 LVLSEE--------------SFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGI----------------------- 288 (592)
Q Consensus 246 ~~~~~~--------------~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~----------------------- 288 (592)
...... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 254 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDL 254 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHH
T ss_pred ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHH
Confidence 322221 2233567788888888888888888888887765432
Q ss_pred -----------------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 289 -----------------------------------------------VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 289 -----------------------------------------------~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
+++..+|+.++.+|.+.|++++|..+|+++.+.
T Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 334 (597)
T 2xpi_A 255 VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334 (597)
T ss_dssp HHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc
Confidence 145555666666666666666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401 (592)
Q Consensus 322 g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 401 (592)
+ +.+..+|+.++.+|.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+
T Consensus 335 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 411 (597)
T 2xpi_A 335 D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWI 411 (597)
T ss_dssp C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 3 3355566666666666666666666666665432 3356677777777777777777777777776654 44567777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 481 (592)
.++.+|.+.|++++|..+|+++...++ .+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..+|+.++.+|.+.|
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKS 489 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence 777777777777777777777776533 366777777777777777777777777776543 335677777777777777
Q ss_pred CHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 007695 482 LINEAEQLLGKISEL----GEAPP--FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQD 555 (592)
Q Consensus 482 ~~~~A~~l~~~m~~~----g~~p~--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~ 555 (592)
++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|...|+++.+.+ +.++.+|..+..+|.+.|++++
T Consensus 490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 777777777777654 55565 6677777777777777777777777776653 3466777777777777777777
Q ss_pred HHHHHHHHHHCCCCCCH
Q 007695 556 AQRVHGLMEAQGFAASE 572 (592)
Q Consensus 556 A~~l~~~m~~~g~~pd~ 572 (592)
|.+.|+++.+. .|+.
T Consensus 569 A~~~~~~~l~~--~p~~ 583 (597)
T 2xpi_A 569 AITHLHESLAI--SPNE 583 (597)
T ss_dssp HHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHhc--CCCC
Confidence 77777777664 4554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=270.99 Aligned_cols=378 Identities=10% Similarity=-0.045 Sum_probs=306.0
Q ss_pred HHHHHccc-ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHc
Q 007695 195 TDKILSLE-KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKE 270 (592)
Q Consensus 195 ~~~l~~~~-~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~ 270 (592)
...+...+ +.|++++|+.+|+++ ..|+..+|..+..++ ..++.+.+...+..+.. .++++.+++.++.+|.+.
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHH
Confidence 34455444 999999999999998 568889999988888 66778888888877643 368899999999999999
Q ss_pred CCHHHHHHHHHHHH-HC--------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC------------
Q 007695 271 NCLEDAERILKKMN-EN--------------GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF------------ 323 (592)
Q Consensus 271 g~~~~A~~l~~~m~-~~--------------g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~------------ 323 (592)
|++++|.++|+++. .. |.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 243 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSN 243 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHT
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHh
Confidence 99999999999532 21 2334688999999999999999999999999865421
Q ss_pred ----------------------------------------------------------CCCHHHHHHHHHHHHHcCCchH
Q 007695 324 ----------------------------------------------------------QPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 324 ----------------------------------------------------------~pd~~t~~~li~a~~~~g~~~~ 345 (592)
+++..+|+.++.+|.+.|++++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 2567777888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|..+|+++.+.+. .+..+++.++.+|.+.|++++|..+++.+.... +.+..+|+.++.+|.+.|++++|..+|+++..
T Consensus 324 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888888877543 366778888888888888888888888887654 56788899999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007695 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505 (592)
Q Consensus 426 ~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 505 (592)
..+ .+..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.... +..+|
T Consensus 402 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~ 478 (597)
T 2xpi_A 402 MDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLL 478 (597)
T ss_dssp HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHH
T ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 543 367789999999999999999999999988754 346788899999999999999999999999876544 78889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAK----KEQMG--PDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALI 579 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~ 579 (592)
+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..++..+.
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 99999999999999999999988765 44666 6789999999999999999999999988764 22444444444
Q ss_pred hh
Q 007695 580 SS 581 (592)
Q Consensus 580 ~~ 581 (592)
.+
T Consensus 558 ~~ 559 (597)
T 2xpi_A 558 LV 559 (597)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=273.65 Aligned_cols=202 Identities=19% Similarity=0.221 Sum_probs=107.5
Q ss_pred HHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------chHHH
Q 007695 278 RILKKMNENGIVPDI-VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ---------PKLGM 347 (592)
Q Consensus 278 ~l~~~m~~~g~~pd~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~---------~~~A~ 347 (592)
.+.+.+.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|++||..|||+||.+|++.+. ++.|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 333444444433322 23444555555555555555555555555555555555555555544333 34555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 348 SLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLG 427 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g 427 (592)
++|++|...|+.||..||++||.+|++.|++++|.++|++|...|+.||..+|+++|.+|++.|++++|.++|++|...|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55555555555555555555555555555555566666655555555666666666666666666666666666665556
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007695 428 HKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479 (592)
Q Consensus 428 ~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 479 (592)
+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666555556666666655555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=270.88 Aligned_cols=196 Identities=17% Similarity=0.209 Sum_probs=183.1
Q ss_pred hCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHH
Q 007695 250 EESFQTNV-RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN---------LDRAKEAFESLR 319 (592)
Q Consensus 250 ~~~~~p~~-~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~---------~~~A~~~~~~m~ 319 (592)
+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+. ++.|.++|++|.
T Consensus 18 ~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 18 KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp ------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence 34444443 45899999999999999999999999999999999999999999998765 688999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 007695 320 SHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLES 399 (592)
Q Consensus 320 ~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 399 (592)
..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 98 ~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 98 VDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~ 445 (592)
|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-23 Score=217.64 Aligned_cols=359 Identities=14% Similarity=0.040 Sum_probs=310.0
Q ss_pred cccCCchhHHHHHHhh--cCCCHhhHHHHHHHH--HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 202 EKEEDPSPLLAEWKEL--LQPSRIDWINLLDRL--REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277 (592)
Q Consensus 202 ~~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~ 277 (592)
++.|++++|+..+..+ ..|+......++..+ ..+..+.+...+...+.. .+.+..+|..+..++.+.|++++|.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 3899999999999887 467666555555544 566788888887777654 3568889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 007695 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357 (592)
Q Consensus 278 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g 357 (592)
..|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.+.|+++....
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999998863 2356789999999999999999999999998764 4456678888899999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437 (592)
Q Consensus 358 ~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~ 437 (592)
+-+..+|..+...+.+.|++++|...|+++...+ +.+...|..+...+...|++++|...|++.....+. +..++..
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 242 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGN 242 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHH
Confidence 3368899999999999999999999999999876 567889999999999999999999999999885432 5788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 007695 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~ 517 (592)
+..+|...|++++|...|+++.+.. +.+..+|..+..++.+.|++++|...++++.+... .+..++..+...+...|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998854 33578899999999999999999999999998754 488999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 518 ~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
+++|...++++.+. .+.+..++..+..+|.+.|++++|++.|+++.+ +.|+.
T Consensus 321 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 321 IEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp HHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred HHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence 99999999999876 344678899999999999999999999999986 46665
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-22 Score=210.46 Aligned_cols=372 Identities=12% Similarity=-0.013 Sum_probs=309.7
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhhc--C-CCHhhHHHHHHHH-HhhCHHHHHHH
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKELL--Q-PSRIDWINLLDRL-REQNTQLYFKV 243 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~--~-p~~~t~~~lL~~~-~~~~~~~~~~~ 243 (592)
.|++.+|...+ .......|+...+...+..++ +.|++++|...++... . .+..+|..+...+ ..++.+.+...
T Consensus 12 ~g~~~~A~~~~--~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 89 (388)
T 1w3b_A 12 AGDFEAAERHC--MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHH--HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 56777777766 111222343334455555666 8999999999998762 3 4567788888877 67788999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007695 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323 (592)
Q Consensus 244 ~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (592)
++..+... +.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.+..
T Consensus 90 ~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 90 YRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 98887642 446678999999999999999999999999886422 56677888899999999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
+.+..+|+.+...|...|++++|...|+++...+. -+...|..+...+...|++++|...+.+..... +.+..++..+
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 243 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHH
Confidence 45688999999999999999999999999998653 368889999999999999999999999998875 5568999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
...|.+.|++++|...|+++....+. +..+|..+..+|.+.|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999986443 57789999999999999999999999998753 56788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~ 552 (592)
++|...++++.+.... +..++..+...|.+.|++++|...|+++.+.. +.++..|..+...+...|+
T Consensus 322 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999886433 68899999999999999999999999998763 3467788888887776653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-19 Score=192.35 Aligned_cols=309 Identities=11% Similarity=0.042 Sum_probs=235.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
+.+...+..+...+.+.|++++|..+|+.+.+.. +.+..+|..+..+|...|++++|...|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3456678888888888888888888888887753 3367788888888888888888888888887764 4567788888
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITSGIERSE---EIYLAL------------LRSFAQCGDVRGAGQITNIMRIEEFQPTLE 398 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~L------------l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 398 (592)
..+|.+.|++++|...|+++..... .+. .++..+ ...+.+.|++++|...|+.+.... +.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 8888888888888888888876532 133 455444 344788888888888888888765 56778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVL----- 473 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l----- 473 (592)
++..++.+|.+.|++++|...|+++..... .+..+|..+..+|...|++++|+..|+++.... +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 888888888888888888888888877533 367788888888888888888888888887642 2233344333
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 474 -------VDWLGRLQLINEAEQLLGKISELGEAPP----FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542 (592)
Q Consensus 474 -------i~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 542 (592)
...|.+.|++++|...++++.+.... + ...+..+..++.+.|++++|...++.+... .+.++..|..
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~ 334 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHH
Confidence 67788888888888888888775432 2 346778888888888888888888887765 2346778888
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
+..+|...|++++|...|+++.+ +.|+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH--hCcch
Confidence 88888888888888888888876 45655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-19 Score=187.23 Aligned_cols=318 Identities=13% Similarity=0.105 Sum_probs=246.1
Q ss_pred hCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 235 QNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEA 314 (592)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~ 314 (592)
++.+.+...+..++.. .+.+..+|..+..++.+.|++++|...|+++.+.+. .+..++..+..+|.+.|++++|...
T Consensus 40 g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 40 GQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3334444444433332 245677888888999999999999999999888643 3678888899999999999999999
Q ss_pred HHHHHhCCCCCCH---HHHHHHH------------HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 007695 315 FESLRSHGFQPDK---KVYNSMI------------MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379 (592)
Q Consensus 315 ~~~m~~~g~~pd~---~t~~~li------------~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 379 (592)
|+++.+.. +.+. .++..+. ..+...|++++|..+|+++.+.. +.+..++..+..+|.+.|+++
T Consensus 117 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 194 (450)
T 2y4t_A 117 FKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPR 194 (450)
T ss_dssp HHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHH
Confidence 99998763 2233 5555553 44888999999999999998764 347888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCC
Q 007695 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASM------------IAAYGKKNL 447 (592)
Q Consensus 380 ~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~l------------i~a~~~~g~ 447 (592)
+|...|+.+.... +.+..++..+..+|...|++++|...|+++....+. +...+..+ ...|.+.|+
T Consensus 195 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 272 (450)
T 2y4t_A 195 KAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGR 272 (450)
T ss_dssp GGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999988765 567889999999999999999999999999875332 34444444 778899999
Q ss_pred HHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 448 LDKALNLLLELEKDGFEPG-----PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKAL 522 (592)
Q Consensus 448 ~~~A~~l~~~m~~~g~~p~-----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 522 (592)
+++|..+|..+.+. .|+ ..++..+..++.+.|++++|...++++.+.... +..+|..+..+|...|++++|.
T Consensus 273 ~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~ 349 (450)
T 2y4t_A 273 YTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAI 349 (450)
T ss_dssp HHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999998874 344 457888889999999999999999998876433 7889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH------------HHhCC-----CHHHHHHHHHHH
Q 007695 523 QALGFLEAKKEQMGPDDFERIING------------LLAGG-----FLQDAQRVHGLM 563 (592)
Q Consensus 523 ~~~~~m~~~~~~~~~~~~~~li~a------------~~~~g-----~~~~A~~l~~~m 563 (592)
..|+++.+.. +-++..+..+..+ |...| +.+++.+.|+++
T Consensus 350 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 350 QDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999998753 3356666666533 33344 556778888763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-19 Score=192.94 Aligned_cols=360 Identities=11% Similarity=-0.018 Sum_probs=301.2
Q ss_pred ccCCchhHHHHHHhh--cCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 203 KEEDPSPLLAEWKEL--LQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERI 279 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~--~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l 279 (592)
+.|++++|+..|+++ ..|+...|..+..++ ..++.+.+...+...+... +.+..+|..+..++.+.|++++|...
T Consensus 18 ~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 899999999999998 468988888888877 6788999999999887653 45678899999999999999999999
Q ss_pred HHHHHHCCCCC---------------------------------------------------------------------
Q 007695 280 LKKMNENGIVP--------------------------------------------------------------------- 290 (592)
Q Consensus 280 ~~~m~~~g~~p--------------------------------------------------------------------- 290 (592)
|+++...+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 99998764210
Q ss_pred ---------CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----CCC--------CCCHHHHHHHHHHHHHcCCchH
Q 007695 291 ---------DIVTSTVLVHMYSK---AGNLDRAKEAFESLRS-----HGF--------QPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 291 ---------d~~~~~~Li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~pd~~t~~~li~a~~~~g~~~~ 345 (592)
+...+..+...+.. .|++++|...|+++.+ ..- +.+..++..+...+...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 13333333333443 8999999999999987 311 2235678889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|..+++++..... +..++..+..+|...|++++|...++.+.... +.+..++..+...|...|++++|...|++...
T Consensus 256 A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 256 AHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp HHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999998653 38889999999999999999999999998775 55788999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC---
Q 007695 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA-PP--- 501 (592)
Q Consensus 426 ~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~--- 501 (592)
..+. +...+..+...|...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.... ++
T Consensus 333 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 410 (514)
T 2gw1_A 333 LDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410 (514)
T ss_dssp TCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS
T ss_pred hChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH
Confidence 6543 66788889999999999999999999988753 335678889999999999999999999998765332 12
Q ss_pred -HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 502 -FKIQVSLCDMYAR---AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 502 -~~~~~~Li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
..++..+...|.. .|++++|...++.+.... +.++.++..+...|...|++++|.+.|++..+. .|+.
T Consensus 411 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~ 482 (514)
T 2gw1_A 411 GIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTM 482 (514)
T ss_dssp CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--cccc
Confidence 4488999999999 999999999999998863 446788999999999999999999999999875 5665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-17 Score=166.96 Aligned_cols=316 Identities=11% Similarity=0.039 Sum_probs=254.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
|+..+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..+|..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 35567788888999999999999999988763 3368888999999999999999999999988763 447788999999
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCC--CCHHHHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIE--RSEEIYLAL------------LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~L------------l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 401 (592)
.|...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++.+.... +.+..++.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999999875320 244444444 578889999999999999998876 66788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----------
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT---------- 471 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~---------- 471 (592)
.+...|...|++++|...|++.....+ .+..++..+...|...|++++|...|+...+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 999999999999999999999988643 367888889999999999999999999987743 22233222
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 472 --VLVDWLGRLQLINEAEQLLGKISELGEAPPF----KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545 (592)
Q Consensus 472 --~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 545 (592)
.+...+.+.|++++|...++++.+.... +. ..+..+...|...|++++|...++...+. .+.++..|..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence 2366788999999999999999886544 33 23556788999999999999999999886 3447888999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHh
Q 007695 546 GLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVALIS 580 (592)
Q Consensus 546 a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~l~~ 580 (592)
.|...|++++|.+.|++..+. .|+. .....+..
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEK 348 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence 999999999999999999865 5665 44444433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-16 Score=172.40 Aligned_cols=356 Identities=12% Similarity=0.035 Sum_probs=278.4
Q ss_pred ccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 203 KEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAER 278 (592)
Q Consensus 203 ~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~ 278 (592)
+.|++++|+..|+++. .| +...|..+..++ ..++.+.+...+...+... +.+..++..+..++...|++++|..
T Consensus 37 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999998873 44 556666666666 6778888998888887653 4567788899999999999999999
Q ss_pred HHHHHHHCC------------------------------------CCCCHH-----------------------------
Q 007695 279 ILKKMNENG------------------------------------IVPDIV----------------------------- 293 (592)
Q Consensus 279 l~~~m~~~g------------------------------------~~pd~~----------------------------- 293 (592)
.|+.+.... ..|+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (537)
T 3fp2_A 115 DLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYA 194 (537)
T ss_dssp HHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHH
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHH
Confidence 886432110 001111
Q ss_pred -HHHHHHHHHH--------HcCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 007695 294 -TSTVLVHMYS--------KAGNLDRAKEAFESLRSHGFQPD-------KKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357 (592)
Q Consensus 294 -~~~~Li~~~~--------~~g~~~~A~~~~~~m~~~g~~pd-------~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g 357 (592)
....+...+. ..|++++|..+|+++.+.. +.+ ..++..+...+...|++++|...+++.....
T Consensus 195 ~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~ 273 (537)
T 3fp2_A 195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273 (537)
T ss_dssp HHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 1111111111 1247889999999998763 223 3357777788899999999999999999854
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437 (592)
Q Consensus 358 ~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~ 437 (592)
|+..++..+...|...|++++|...+..+.... +.+..++..+...|...|++++|...|++.....+. +...+..
T Consensus 274 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 349 (537)
T 3fp2_A 274 --PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQ 349 (537)
T ss_dssp --CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHH
T ss_pred --CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 568889999999999999999999999999876 567899999999999999999999999999986543 5678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHH
Q 007695 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE-----APPFKIQVSLCDMY 512 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~~~~~Li~~~ 512 (592)
+..+|...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+... ......+..+...|
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~ 428 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATIL 428 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 34567888999999999999999999999875421 11233355566778
Q ss_pred HHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 513 ARA----------GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 513 ~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
... |++++|...|+++.... +.++..|..+...|...|++++|.+.|++..+..
T Consensus 429 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 429 ARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 888 99999999999998863 4467889999999999999999999999998764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-17 Score=174.91 Aligned_cols=328 Identities=11% Similarity=-0.050 Sum_probs=273.6
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 312 (592)
..++.+.+...+...+... |+...|..+..+|.+.|++++|...|+++.+.+ +.+..+|..+..+|.+.|++++|.
T Consensus 18 ~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 6788899999999888754 789999999999999999999999999999875 337789999999999999999999
Q ss_pred HHHHHHHhCCCCCC------------------------------------------------------------------
Q 007695 313 EAFESLRSHGFQPD------------------------------------------------------------------ 326 (592)
Q Consensus 313 ~~~~~m~~~g~~pd------------------------------------------------------------------ 326 (592)
..|+++...+ +++
T Consensus 94 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 94 FDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 9999987654 111
Q ss_pred -------------HHHHHHHHHHHHH---cCCchHHHHHHHHHHH-----CCC--------CCCHHHHHHHHHHHHhCCC
Q 007695 327 -------------KKVYNSMIMAYVN---AGQPKLGMSLVDMMIT-----SGI--------ERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 327 -------------~~t~~~li~a~~~---~g~~~~A~~l~~~m~~-----~g~--------~p~~~t~~~Ll~~~~~~g~ 377 (592)
...+......+.. .|++++|..+|+++.. ..- +.+..++..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 3333333343443 7999999999999987 311 2235678889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~ 457 (592)
+++|...++.+.... |+..++..+...|...|++++|...|+++..... .+...+..+...|...|++++|...|+.
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999875 3388999999999999999999999999988644 3677888899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC
Q 007695 458 LEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-MG 536 (592)
Q Consensus 458 m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~-~~ 536 (592)
..+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...|...|++++|...++.+...... +.
T Consensus 330 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 330 AKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 98864 335678889999999999999999999999886544 6788999999999999999999999988764221 11
Q ss_pred ----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCCCCH
Q 007695 537 ----PDDFERIINGLLA---GGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 537 ----~~~~~~li~a~~~---~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
...|..+...|.. .|++++|.+.|+++... .|+.
T Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 448 (514)
T 2gw1_A 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRS 448 (514)
T ss_dssp CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--Cccc
Confidence 3378899999999 99999999999999875 4544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-16 Score=157.07 Aligned_cols=303 Identities=13% Similarity=0.112 Sum_probs=240.3
Q ss_pred hhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 234 EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKE 313 (592)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~ 313 (592)
.++.+.+...+...+... +.+..++..+...+...|++++|...|+++.+.. +-+...|..+..+|...|++++|..
T Consensus 16 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 16 AGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHH
Confidence 344444444444444332 3456788888999999999999999999988763 2367888999999999999999999
Q ss_pred HHHHHHhCCCCC----CHHHHHHH------------HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 007695 314 AFESLRSHGFQP----DKKVYNSM------------IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 314 ~~~~m~~~g~~p----d~~t~~~l------------i~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 377 (592)
.|+++.+. .| +...+..+ ...+...|++++|..+++++.+.. +.+..++..+...+...|+
T Consensus 93 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 93 DFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCC
Confidence 99999876 34 44455544 578889999999999999998864 3478899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHhc
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA------------SMIAAYGKK 445 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~------------~li~a~~~~ 445 (592)
+++|...++...... +.+..++..+...|...|++++|...|+......+. +...+. .+...+.+.
T Consensus 170 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 170 PRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999998775 667899999999999999999999999999885432 333332 235668899
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 446 NLLDKALNLLLELEKDGFEPG-P----ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520 (592)
Q Consensus 446 g~~~~A~~l~~~m~~~g~~p~-~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~ 520 (592)
|++++|...+++..+.. |+ . ..+..+..++...|++++|...+++..+.... +..++..+...|...|++++
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~ 324 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDE 324 (359)
T ss_dssp TCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 99999999999988753 33 2 33556778899999999999999999887543 78899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 521 ALQALGFLEAKKEQMGPDDFERIINGLL 548 (592)
Q Consensus 521 A~~~~~~m~~~~~~~~~~~~~~li~a~~ 548 (592)
|...|+++.+.. +-++..+..+..+..
T Consensus 325 A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 325 AIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 999999998863 335666666665544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.4e-17 Score=163.12 Aligned_cols=295 Identities=10% Similarity=-0.028 Sum_probs=234.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007695 253 FQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNS 332 (592)
Q Consensus 253 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 332 (592)
.+.+...+..+...+...|++++|.++|+++.+... .+...+..++.++...|++++|..+|+++.+.. +.+..+|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 345556777888888999999999999999887643 355667778888899999999999999988754 456788888
Q ss_pred HHHHHHHcC-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 007695 333 MIMAYVNAG-QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAG 411 (592)
Q Consensus 333 li~a~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g 411 (592)
+...+...| ++++|...|++..... +.+..++..+...+...|++++|...++...... +.+...+..+...|...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 999999999 8999999999988764 3357788899999999999999999999988775 445677777889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCH
Q 007695 412 DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG--------FEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 412 ~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g--------~~p~~~ty~~li~~~~~~g~~ 483 (592)
++++|...|++.....+ .+...+..+...|...|++++|...+++..+.. ......++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999887644 367788888889999999999999998876531 133357888888888999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCCHH
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL-LAGGFLQ 554 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~-~~~g~~~ 554 (592)
++|...+++..+.... +..++..+...|...|++++|...|++..+.. +.++..+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999988876544 67788888888999999999999988887653 34667777777777 4555543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-16 Score=158.85 Aligned_cols=286 Identities=9% Similarity=-0.077 Sum_probs=241.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007695 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLAL 368 (592)
Q Consensus 289 ~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 368 (592)
+.+...+..+...+...|++++|..+|+++.+.. +.+..++..++.++...|++++|..+++++.+.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4466677888999999999999999999998764 4566677788899999999999999999999864 3367889999
Q ss_pred HHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007695 369 LRSFAQCG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447 (592)
Q Consensus 369 l~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~ 447 (592)
...+...| ++++|...|+...... +.+..+|..+...|...|++++|...|++....... +...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999998775 556788999999999999999999999999986543 45667778999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHHcCCHH
Q 007695 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG--------EAPPFKIQVSLCDMYARAGIEK 519 (592)
Q Consensus 448 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~~~~~Li~~~~~~g~~~ 519 (592)
+++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. ......++..+...|...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998754 4467889999999999999999999999987642 1334678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHhhh
Q 007695 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVALISSQ 582 (592)
Q Consensus 520 ~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~l~~~~ 582 (592)
+|...+++..+.. +.++..|..+...|...|++++|.+.|++..+ +.|+. .....+..+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHH
Confidence 9999999998864 34677899999999999999999999999875 46665 4444444443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=163.93 Aligned_cols=288 Identities=13% Similarity=0.014 Sum_probs=191.0
Q ss_pred cCCHHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH
Q 007695 270 ENCLEDAER-ILKKMNENGI---VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 270 ~g~~~~A~~-l~~~m~~~g~---~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 345 (592)
.|++++|.. .|++...... ..+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 345555555 5544332211 0123345555666666666666666666666543 3455566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHHc
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL---------------LVEAYGQA 410 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------Li~~~~~~ 410 (592)
|...|+++.+.. +.+..++..+...|...|++++|...++.+.... +.+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666665543 2255566666666666666666666666665543 111111110 23333488
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 411 GDPDQARSNFDYMIRLGHKP-DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQL 489 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 489 (592)
|++++|...|+++....+.. +..++..+...|...|++++|...|++..+.. +.+...+..+..++...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999888754322 57788888889999999999999999887743 34577888899999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhCCCHHHHHHH
Q 007695 490 LGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM----------GPDDFERIINGLLAGGFLQDAQRV 559 (592)
Q Consensus 490 ~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~----------~~~~~~~li~a~~~~g~~~~A~~l 559 (592)
++++.+.... +..++..+..+|.+.|++++|...|+++....... ...+|..+..+|...|++++|..+
T Consensus 274 ~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 9998876543 67889999999999999999999998877642211 267899999999999999999888
Q ss_pred HHH
Q 007695 560 HGL 562 (592)
Q Consensus 560 ~~~ 562 (592)
+++
T Consensus 353 ~~~ 355 (368)
T 1fch_A 353 DAR 355 (368)
T ss_dssp HTT
T ss_pred HHH
Confidence 764
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-16 Score=161.43 Aligned_cols=265 Identities=10% Similarity=-0.060 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a 336 (592)
...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4567888999999999999999999999874 3478889999999999999999999999998765 5588899999999
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHH
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLA---------------LLRSFAQCGDVRGAGQITNIMRIEEFQP--TLES 399 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---------------Ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~ 399 (592)
|...|++++|...++++...... +...+.. .+..+...|++++|...++.+.... +. +..+
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 219 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDV 219 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHH
Confidence 99999999999999999886432 2222221 2444448899999999999998875 33 5899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR 479 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 479 (592)
+..+...|.+.|++++|...|+++....+ .+..+|..+...|...|++++|...|++..+.. +.+...+..+..+|.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 99999999999999999999999988643 367889999999999999999999999988753 3457889999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 480 LQLINEAEQLLGKISELGEAP----------PFKIQVSLCDMYARAGIEKKALQALGF 527 (592)
Q Consensus 480 ~g~~~~A~~l~~~m~~~g~~p----------~~~~~~~Li~~~~~~g~~~~A~~~~~~ 527 (592)
.|++++|...++++.+..... ...+|..+..+|...|+.++|..++++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 999999999999987653321 278999999999999999999988763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-15 Score=162.64 Aligned_cols=320 Identities=13% Similarity=0.011 Sum_probs=234.0
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAK 312 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~ 312 (592)
..++.+.+...+...+... +.++..|..+..+|.+.|++++|.+.|+++.+.+ +.+..++..+..+|...|++++|.
T Consensus 37 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 5566777777777776543 4566777888888888888888888888877754 236777777888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC------CCCCCHHHH---------------------
Q 007695 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS------GIERSEEIY--------------------- 365 (592)
Q Consensus 313 ~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~--------------------- 365 (592)
..|+.+.. .|+ ..+..+..+...+....|...++++... ...|+....
T Consensus 114 ~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVLSL---NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHhc---CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 88863322 222 2222334444455556677777666432 112222221
Q ss_pred ---------HHHHHHHHh--------CCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 366 ---------LALLRSFAQ--------CGDVRGAGQITNIMRIEEFQPT-------LESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 366 ---------~~Ll~~~~~--------~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
..+...+.. .|++++|..+++.+.... +.+ ..++..+...+...|++++|...|+
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 112212111 247889999999988764 333 3357777888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 007695 422 YMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPP 501 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 501 (592)
+..... |+..++..+...|...|++++|...|....+.. +.+..++..+...+...|++++|...++++.+.... +
T Consensus 268 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~ 343 (537)
T 3fp2_A 268 ESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-N 343 (537)
T ss_dssp HHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C
Confidence 999853 557888889999999999999999999988754 346788999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 502 FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 502 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
...+..+...|...|++++|...++++.... +.++..|..+...|...|++++|.+.|+++.+.
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6889999999999999999999999998873 446778999999999999999999999998754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.9e-16 Score=158.81 Aligned_cols=274 Identities=9% Similarity=-0.052 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a 336 (592)
...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+..+|..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446777777777888888888888777653 2366777777777777777777777777777653 3456677777777
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIERSE-EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
|...|++++|...|+++.+.. |+. ..+..+. .....+..+...|...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 777777777777777776532 111 1111110 012233344555555666666
Q ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 416 ARSNFDYMIRLGHK-PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 416 A~~lf~~m~~~g~~-pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
|...|+++....+. ++..++..+...|...|++++|+..|++..+.. +.+..++..+..+|...|++++|...++++.
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666665554221 145555556666666666666666666655432 2345566666666666666666666666666
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ-----------MGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
+.... +..++..+..+|...|++++|...|+++...... .+...|..+..++...|+.+.+.++.+
T Consensus 275 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 275 EIQPG-FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred hcCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 54333 4666666667777777777777776665542211 124567777777777777777666554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=157.14 Aligned_cols=274 Identities=12% Similarity=-0.027 Sum_probs=170.9
Q ss_pred CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 221 SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLV 299 (592)
Q Consensus 221 ~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li 299 (592)
+...|..+-..+ ..++.+.+...++..+... +.+..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 344465555555 7788999999999988653 4578889999999999999999999999998864 33688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 007695 300 HMYSKAGNLDRAKEAFESLRSHGFQPDK-KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDV 378 (592)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 378 (592)
.+|...|++++|...|+++.+. .|+. ..+..+. ....++..+...+.+.|++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHCC--------------------------------------------CCHHH
T ss_pred HHHHccccHHHHHHHHHHHHHh--CccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhH
Confidence 9999999999999999999864 2322 1121110 1122334444555555555
Q ss_pred HHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007695 379 RGAGQITNIMRIEEFQP--TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456 (592)
Q Consensus 379 ~~A~~~~~~m~~~g~~~--~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 456 (592)
++|...++++.... +. +..++..+...|...|++++|...|++.....+ .+..+|..+..+|...|++++|...|+
T Consensus 194 ~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 194 EGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555543 22 455555555556666666666666655555322 244555555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 457 ELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA-----------PPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 457 ~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
+..+.. +.+..++..+..+|...|++++|...++++.+.... .+..+|..+..++...|+.+.+..+.
T Consensus 272 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 272 RALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 555432 223555556666666666666666666655433111 13567888888888888888887765
Q ss_pred HH
Q 007695 526 GF 527 (592)
Q Consensus 526 ~~ 527 (592)
+.
T Consensus 351 ~~ 352 (365)
T 4eqf_A 351 LG 352 (365)
T ss_dssp TT
T ss_pred Hh
Confidence 53
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-15 Score=149.60 Aligned_cols=278 Identities=11% Similarity=-0.004 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
..+..+...+...|++++|..+|+++.+... .+...+..+..++...|++++|...|+++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 3456677777888888888888888777532 367777778888888888888888888877653 44667777777778
Q ss_pred HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHHcCCHHH
Q 007695 338 VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL-VE-AYGQAGDPDQ 415 (592)
Q Consensus 338 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L-i~-~~~~~g~~~~ 415 (592)
...|++++|...++++...... +...+..+... .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 8888888888888777765321 22222222000 0111111122 11 2556667777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 416 A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
|...++++...... +...+..+...|...|++++|...+.++.+.. +.+..++..+...+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777665432 56667777777777777777777777776543 33466777778888888888888888888777
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM-----------GPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 496 ~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
.... +..++..+...|...|++++|...++++....... ++..|..+..+|...|++++|..++++.
T Consensus 235 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 INPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6433 67788888888888999999998888877653221 4667888889999999999998887643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-15 Score=149.00 Aligned_cols=275 Identities=11% Similarity=-0.054 Sum_probs=187.5
Q ss_pred HHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007695 225 WINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS 303 (592)
Q Consensus 225 ~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~ 303 (592)
|..+-..+ ..++.+.+...++..+... +.+...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+...|.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 43344443 7788999999999887653 4577889999999999999999999999998863 347889999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhCCCHHHH
Q 007695 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR--SFAQCGDVRGA 381 (592)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~--~~~~~g~~~~A 381 (592)
..|++++|...|+++.+.. +.+...+..+... .|+......+.. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 9999999999999998763 2222223222110 011111112212 24555666677
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 382 GQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 382 ~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
...++.+.... +.+..++..+...|...|++++|...|+++....+ .+..++..+...|...|++++|...|++..+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77776666554 44566677777777777777777777777666432 24566667777777777777777777776654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP-----------PFKIQVSLCDMYARAGIEKKALQALGFL 528 (592)
Q Consensus 462 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~~~~~Li~~~~~~g~~~~A~~~~~~m 528 (592)
. +.+...+..+..++...|++++|...++++....... +..++..+..+|.+.|+.++|..+++..
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2 2346667777777777788888887777776543221 4678888889999999999998887643
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-17 Score=183.80 Aligned_cols=153 Identities=12% Similarity=0.142 Sum_probs=128.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNE---NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
..-..+||+||++|++.|++++|.++|+.|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44556899999999999999999999988764 589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC------HHHHHHH
Q 007695 331 NSMIMAYVNAGQP-KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT------LESCTLL 403 (592)
Q Consensus 331 ~~li~a~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~L 403 (592)
|++|.++++.|+. +.|.++|++|.+.|+.||..+|++++.++.+.+ +++..+.+ .-++.|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999999985 789999999999999999999999998776643 33333333 2233333 4455566
Q ss_pred HHHHHHcC
Q 007695 404 VEAYGQAG 411 (592)
Q Consensus 404 i~~~~~~g 411 (592)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 67776655
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-12 Score=137.41 Aligned_cols=338 Identities=12% Similarity=-0.002 Sum_probs=283.6
Q ss_pred cCCchhHHHHHHhhcC-CCHhhHHHHHHHHH-----hhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCH
Q 007695 204 EEDPSPLLAEWKELLQ-PSRIDWINLLDRLR-----EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK----ENCL 273 (592)
Q Consensus 204 ~g~~~~A~~~~~~~~~-p~~~t~~~lL~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~----~g~~ 273 (592)
.+++++|+..|++..+ -+...+..|-..+. .++.+.+...++..... .+...+..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCH
Confidence 7899999999988743 34555555544443 45678888888777643 366778888888888 8899
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchH
Q 007695 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSK----AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN----AGQPKL 345 (592)
Q Consensus 274 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~ 345 (592)
++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +..++..+...|.. .+++++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999999875 67788889889988 789999999999999865 78899999999988 899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ----AGDPDQAR 417 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~ 417 (592)
|..+|++..+.| +...+..+...|.. .+++++|...|+.....+ +...+..+...|.. .+++++|.
T Consensus 206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 999999999876 67788888888887 789999999999988765 56788888888888 89999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 007695 418 SNFDYMIRLGHKPDDRCTASMIAAYGKK-----NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ---LINEAEQL 489 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~~t~~~li~a~~~~-----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g---~~~~A~~l 489 (592)
..|++..+.| +...+..+...|... +++++|+.+|++..+.| +...+..+...|...| ++++|...
T Consensus 280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~ 353 (490)
T 2xm6_A 280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEW 353 (490)
T ss_dssp HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence 9999998753 456777777788777 89999999999998865 4567777777787766 78999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHH
Q 007695 490 LGKISELGEAPPFKIQVSLCDMYAR----AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHG 561 (592)
Q Consensus 490 ~~~m~~~g~~p~~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~----~g~~~~A~~l~~ 561 (592)
|++..+.+ +...+..|...|.. .+++++|...|++..+.+ ++..+..|...|.. .++.++|...|+
T Consensus 354 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 354 FRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998874 68889999999998 899999999999998865 57788889999988 899999999999
Q ss_pred HHHHCCCC
Q 007695 562 LMEAQGFA 569 (592)
Q Consensus 562 ~m~~~g~~ 569 (592)
+..+.|..
T Consensus 428 ~A~~~~~~ 435 (490)
T 2xm6_A 428 TASTNDMN 435 (490)
T ss_dssp HHHHHHCC
T ss_pred HHHHCCCC
Confidence 99988754
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-17 Score=180.23 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMIT---SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402 (592)
Q Consensus 326 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 402 (592)
-..|||+||++||+.|++++|.++|.+|.+ .|+.||..|||+||++||+.|++++|.++|++|...|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 355788888888888888888888776653 46777888888888888888888888888888887788888888888
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 007695 403 LVEAYGQAGD-PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK 445 (592)
Q Consensus 403 Li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~ 445 (592)
||.++++.|+ .++|.++|++|...|+.||.++|++++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888877776 367777888887777878888887777655544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-13 Score=149.80 Aligned_cols=390 Identities=8% Similarity=-0.003 Sum_probs=276.1
Q ss_pred HHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhhc--CCCHhhHHHHHHHH--HhhCHHH----H
Q 007695 170 EKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKELL--QPSRIDWINLLDRL--REQNTQL----Y 240 (592)
Q Consensus 170 ~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~--~p~~~t~~~lL~~~--~~~~~~~----~ 240 (592)
+++.+|+..| .......|.+..+......++ +.|++++|+.+|++++ .|+...|...+.-. ..++... .
T Consensus 26 ~~~~~a~~~~--e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~ 103 (530)
T 2ooe_A 26 QPIDKARKTY--ERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKM 103 (530)
T ss_dssp SCHHHHHHHH--HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHH
T ss_pred CCHHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHH
Confidence 3455666666 222334455556666777777 8999999999999984 47877787776533 2233333 3
Q ss_pred HHHHHHHhhhCCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--------
Q 007695 241 FKVAELVLSEESFQT-NVRDYSKLIDAHAK---------ENCLEDAERILKKMNENGIVPDIVTSTVLVHMY-------- 302 (592)
Q Consensus 241 ~~~~~~~~~~~~~~p-~~~~y~~Li~~~~~---------~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~-------- 302 (592)
..+++..+...|..| +...|...+....+ .|+++.|..+|++..+....+....|.......
T Consensus 104 ~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~ 183 (530)
T 2ooe_A 104 AQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLA 183 (530)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHH
Confidence 335555555555544 56678887776655 788999999999998831111123443332211
Q ss_pred -----HHcCCHHHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHHHc----CCc----hHHHHHHHH
Q 007695 303 -----SKAGNLDRAKEAFESL------RSHG---FQPD--------KKVYNSMIMAYVNA----GQP----KLGMSLVDM 352 (592)
Q Consensus 303 -----~~~g~~~~A~~~~~~m------~~~g---~~pd--------~~t~~~li~a~~~~----g~~----~~A~~l~~~ 352 (592)
...+++..|..++..+ .+.. ++|+ ...|...+...... ++. ..+..+|++
T Consensus 184 ~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~ 263 (530)
T 2ooe_A 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ 263 (530)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHH
Confidence 1235677788777763 2221 3444 34666666443332 232 377889999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh-------CCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 353 MITSGIERSEEIYLALLRSFAQ-------CGDVR-------GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 353 m~~~g~~p~~~t~~~Ll~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
.+... +-+...|..+...+.+ .|+++ +|..+|++....-.+.+...|..++..+.+.|++++|..
T Consensus 264 al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 264 CLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 88853 4478888888888876 79987 899999998863235568999999999999999999999
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Q 007695 419 NFDYMIRLGHKPD--DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD-WLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 419 lf~~m~~~g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~-~~~~~g~~~~A~~l~~~m~~ 495 (592)
+|+++... .|+ ...|...+..+.+.|++++|..+|++..+.. +.+...|..... .+...|++++|..+|+...+
T Consensus 343 ~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~ 419 (530)
T 2ooe_A 343 IYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 419 (530)
T ss_dssp HHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 99999985 343 3578888888899999999999999998753 222333333222 23468999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 496 LGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QM--GPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 496 ~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~--~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.... +...|..++..+.+.|+.++|..+|++....+. .| ....|...+......|+.+.+.++++++.+.
T Consensus 420 ~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 420 KYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6543 789999999999999999999999999988632 22 2347888898889999999999999998864
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.8e-15 Score=145.97 Aligned_cols=251 Identities=11% Similarity=0.069 Sum_probs=175.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 265 DAHAKENCLEDAERILKKMNENGIVPDI--VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 265 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~ 342 (592)
+-....|++..|+..++..... .|+. .....+.++|...|+++.|...++.. -+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 4455677888888777665443 2332 34455677888888888887766442 25667777777788888888
Q ss_pred chHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 343 PKLGMSLVDMMITSGIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 343 ~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
.++|++.++++...+..| +...+..+...+...|++++|.+.++. +.+..++..++..|.+.|++++|...|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888887765434 455666666778888888888888776 4567778888888888888888888888
Q ss_pred HHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007695 422 YMIRLGHKPDDRCTA---SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~---~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 498 (592)
++.... |+....+ ..+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++.....
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 887753 4432111 1223334457788888888887765 345677777788888888888888888888777654
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc
Q 007695 499 APPFKIQVSLCDMYARAGIEKK-ALQALGFLEAK 531 (592)
Q Consensus 499 ~p~~~~~~~Li~~~~~~g~~~~-A~~~~~~m~~~ 531 (592)
. +..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4 67777778878888887765 56777777664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-11 Score=130.24 Aligned_cols=330 Identities=16% Similarity=0.016 Sum_probs=274.5
Q ss_pred HHHHHHhh-cCCCHhhHHHHHHHHH-----hhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 007695 210 LLAEWKEL-LQPSRIDWINLLDRLR-----EQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAK----ENCLEDAERI 279 (592)
Q Consensus 210 A~~~~~~~-~~p~~~t~~~lL~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~----~g~~~~A~~l 279 (592)
++..++.. ...+...+..+-..+. .++...+...++..... -+...+..|...|.. .+++++|.+.
T Consensus 26 ~~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 34455444 3345555555555553 45678888887777643 456788889999998 8999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHH
Q 007695 280 LKKMNENGIVPDIVTSTVLVHMYSK----AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN----AGQPKLGMSLVD 351 (592)
Q Consensus 280 ~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~A~~l~~ 351 (592)
|++..+.| +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|...|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999875 77788889999988 889999999999999875 67888899999987 789999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 007695 352 MMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ----AGDPDQARSNFDYM 423 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~lf~~m 423 (592)
+..+.| +...+..|...|.. .++.++|...|+.....+ +..++..+...|.. .+++++|...|++.
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999876 78889999999988 899999999999998865 67888889999987 89999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHH
Q 007695 424 IRLGHKPDDRCTASMIAAYGK----KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL-----QLINEAEQLLGKIS 494 (592)
Q Consensus 424 ~~~g~~pd~~t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-----g~~~~A~~l~~~m~ 494 (592)
...| +...+..+-..|.. .++.++|+.+|+...+.| +...+..+...|... +++++|...+++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8753 45666667777777 899999999999988764 556777788888887 89999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 007695 495 ELGEAPPFKIQVSLCDMYARAG---IEKKALQALGFLEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~----~g~~~~A~~l~~~m~~~g 567 (592)
+.+ +...+..|...|...| +.++|...|++..+.+ ++..+..+...|.. .++.++|++.|++..+.|
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 875 5678888888888867 8899999999998863 57788899999998 899999999999999876
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.3e-14 Score=139.62 Aligned_cols=256 Identities=11% Similarity=0.057 Sum_probs=210.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDK--KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 376 (592)
++-....|++..|+..++..... .|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44566789999999999887643 3443 3556778999999999999987654 24567888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007695 377 DVRGAGQITNIMRIEEFQP-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLL 455 (592)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~ 455 (592)
+.++|.+.++++...+..| +...+..+...|.+.|++++|...|++ ..+...+..+...|.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876444 677788888999999999999999997 357888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 456 LELEKDGFEPGPATY---TVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 456 ~~m~~~g~~p~~~ty---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
+.+.+.. |+...+ ...+..+...|++++|..+|+++.+... .+...++.+..++...|++++|...|+++...
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~- 229 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDK- 229 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9998753 553211 2233444456899999999999998744 48899999999999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHCCCCCCH
Q 007695 533 EQMGPDDFERIINGLLAGGFLQD-AQRVHGLMEAQGFAASE 572 (592)
Q Consensus 533 ~~~~~~~~~~li~a~~~~g~~~~-A~~l~~~m~~~g~~pd~ 572 (592)
.+-++.++..++..+...|+.++ +.++++++.+. .|+.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~ 268 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSH 268 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCC
Confidence 34578899999999999999876 57899988864 6766
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=155.37 Aligned_cols=263 Identities=12% Similarity=0.047 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
+|+.|+.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|...++...+. .+++.+.+.++.+|.
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 5556666666666666666666432 35556666666666666666666655544442 344555666666666
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+
T Consensus 106 Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVe 169 (449)
T 1b89_A 106 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 169 (449)
T ss_dssp ---CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHH
Confidence 6666666655553 245556666666666666666666666654 256666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 007695 419 NFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE 498 (592)
Q Consensus 419 lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 498 (592)
.+.++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.|++++|..+++......
T Consensus 170 a~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le- 237 (449)
T 1b89_A 170 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE- 237 (449)
T ss_dssp HHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-
T ss_pred HHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-
Confidence 66666 2566666666667766766666433332 22333334456666677777777777776666544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC------CHHHHHHHHHHHHhCCCHHHHHH
Q 007695 499 APPFKIQVSLCDMYARAGIEKKALQALGFLEAK-KEQM------GPDDFERIINGLLAGGFLQDAQR 558 (592)
Q Consensus 499 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-~~~~------~~~~~~~li~a~~~~g~~~~A~~ 558 (592)
+-...+|+-|..+|++- ++++..+.++....+ +.++ +...|..+.-.|.+.++++.|..
T Consensus 238 ~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 238 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 33566666666666654 233333333322211 1111 12346666667777777776655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=9e-13 Score=140.29 Aligned_cols=362 Identities=9% Similarity=-0.043 Sum_probs=167.1
Q ss_pred HHHHHHccc-ccCCchhHHHHHHhhc-----------CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhh---C--CCC
Q 007695 194 ITDKILSLE-KEEDPSPLLAEWKELL-----------QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSE---E--SFQ 254 (592)
Q Consensus 194 ~~~~l~~~~-~~g~~~~A~~~~~~~~-----------~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~---~--~~~ 254 (592)
+++.|..++ ..|+.++|++.|++.. .| ..++|+.+-..+ ..++.+.+...+...+.- . ...
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 455566666 8999999999997752 12 133444444444 445555555544443321 0 011
Q ss_pred -CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 007695 255 -TNVRDYSKLIDAHAKE--NCLEDAERILKKMNENGIVPDIVTSTVLVHM---YSKAGNLDRAKEAFESLRSHGFQPDKK 328 (592)
Q Consensus 255 -p~~~~y~~Li~~~~~~--g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~---~~~~g~~~~A~~~~~~m~~~g~~pd~~ 328 (592)
....+|+.+..++.+. +++++|...|++..+.... +...+..+..+ +...++.++|++.|++..+.. +.+..
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~ 210 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQY 210 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchH
Confidence 1233444444444332 3456666666665553211 33333333333 223455555666665555432 33444
Q ss_pred HHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 329 VYNSMIMAYVN----AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404 (592)
Q Consensus 329 t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li 404 (592)
++..+...+.. .+++++|.+++++..... +.+..++..+...|...|++++|...+.+..+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 44444443333 234555666666555543 2245555566666666666666666666655543 33455555555
Q ss_pred HHHHHc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007695 405 EAYGQA-------------------GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEP 465 (592)
Q Consensus 405 ~~~~~~-------------------g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p 465 (592)
..|... +..+.|...|++.....+. +..++..+...|...|++++|...|++..+....+
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 555332 1234455555554443221 23344455555666666666666666555532222
Q ss_pred CH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 466 GP--ATYTVLVD-WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFER 542 (592)
Q Consensus 466 ~~--~ty~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 542 (592)
.. ..+..+.. .....|+.++|...|.+..+... +..... +....+.++++..... .+.++.+|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~~l~~~~~~~l~~-~p~~~~~~~~ 435 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKDKLQKIAKMRLSK-NGADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHHHHHHHHHHHHHH-CC-CTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 11 11111111 12345556666666665555322 211111 1112223333333333 2446778999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CCCCH
Q 007695 543 IINGLLAGGFLQDAQRVHGLMEAQG-FAASE 572 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~~~g-~~pd~ 572 (592)
+...|...|++++|++.|++.++.| ..|+.
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHCC-------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 9999999999999999999998764 33443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.6e-15 Score=152.16 Aligned_cols=250 Identities=10% Similarity=0.022 Sum_probs=112.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHH
Q 007695 269 KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMS 348 (592)
Q Consensus 269 ~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~ 348 (592)
+.|++++|.++++++. +..+|..|..++.+.|++++|.+.|.+. +|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6678999999999983 3358999999999999999999999653 577899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 007695 349 LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428 (592)
Q Consensus 349 l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~ 428 (592)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777763 4567889999999999999999998885 477789999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 007695 429 KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508 (592)
Q Consensus 429 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~L 508 (592)
..|..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|...... +..++.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 36999999999999999999999988 3789999999999999999999655443 23355556679
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 007695 509 CDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG--GFLQDAQRVH 560 (592)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~--g~~~~A~~l~ 560 (592)
+..|.+.|++++|..+++...... +-....|+-|..+|++- ++..+.++.|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999887653 44566788777777755 3444444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-13 Score=129.14 Aligned_cols=224 Identities=9% Similarity=-0.100 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF--QPT----LESCTL 402 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~ 402 (592)
.|..+...+...|++++|..+|++..+.. .+..++..+..+|...|++++|...+........ .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44444455555555555555555554443 3445555555555555555555555555443320 011 355556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQL 482 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 482 (592)
+...|...|++++|...|++..... |+. ..+...|++++|...+..+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 6666666666666666666665532 221 23445566666666666665532 2234556666666777777
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007695 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562 (592)
Q Consensus 483 ~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~ 562 (592)
+++|...++++.+.... +..++..+...|...|++++|...|+...... +.++..|..+...|...|++++|.+.|++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777776665433 56677777777777777777777777776652 33566677777777777777777777777
Q ss_pred HHHC
Q 007695 563 MEAQ 566 (592)
Q Consensus 563 m~~~ 566 (592)
..+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-11 Score=131.86 Aligned_cols=366 Identities=9% Similarity=0.014 Sum_probs=260.6
Q ss_pred HHHHHHcccccCCchhHHHHHHhhc--CC-CHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-H
Q 007695 194 ITDKILSLEKEEDPSPLLAEWKELL--QP-SRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAH-A 268 (592)
Q Consensus 194 ~~~~l~~~~~~g~~~~A~~~~~~~~--~p-~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~-~ 268 (592)
....++.+.+.|++++|+.+|++++ .| +...|...+... ..++.+.+..+++..+.. .|++..|...+... .
T Consensus 15 ~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~~~~~~ 91 (530)
T 2ooe_A 15 AWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYLSYVRE 91 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHHHHHHH
Confidence 3344444447899999999999984 35 455577777766 667888899988888754 46877777777533 4
Q ss_pred HcCCHHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 269 KENCLEDAER----ILKKMNE-NGIVP-DIVTSTVLVHMYSK---------AGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 269 ~~g~~~~A~~----l~~~m~~-~g~~p-d~~~~~~Li~~~~~---------~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
..|+++.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++..+....+....|...
T Consensus 92 ~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~ 171 (530)
T 2ooe_A 92 TKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDY 171 (530)
T ss_dssp HTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHH
T ss_pred HccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 5677777665 7777654 35444 56778887776655 78899999999999873111112444433
Q ss_pred HHHH-------------HHcCCchHHHHHHHHHH------HCC---CCCC--------HHHHHHHHHHHHhC----CCH-
Q 007695 334 IMAY-------------VNAGQPKLGMSLVDMMI------TSG---IERS--------EEIYLALLRSFAQC----GDV- 378 (592)
Q Consensus 334 i~a~-------------~~~g~~~~A~~l~~~m~------~~g---~~p~--------~~t~~~Ll~~~~~~----g~~- 378 (592)
.... .+.+++..|..++.+.. +.. ++|+ ...|...+...... ++.
T Consensus 172 ~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~ 251 (530)
T 2ooe_A 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQT 251 (530)
T ss_dssp HHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSH
T ss_pred HHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcch
Confidence 3211 12345667777766532 211 2443 24555555443332 232
Q ss_pred ---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 379 ---RGAGQITNIMRIEEFQPTLESCTLLVEAYGQ-------AGDPD-------QARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 379 ---~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~-------~g~~~-------~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
..+..+|++..... +.+...|..++..+.+ .|+++ +|..+|++....-.+-+...|..++..
T Consensus 252 ~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 252 LITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 46778898888764 5678899999988886 79987 899999998862122357788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHcCCH
Q 007695 442 YGKKNLLDKALNLLLELEKDGFEPG-P-ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDM-YARAGIE 518 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m~~~g~~p~-~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~-~~~~g~~ 518 (592)
+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +...|+.
T Consensus 331 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCH
T ss_pred HHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCCh
Confidence 99999999999999999884 454 2 57888888899999999999999999876432 33444333322 3468999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 519 KKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 519 ~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
++|..+|+...+.. +-++..|..++..+.+.|+.++|..+|++....+
T Consensus 408 ~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 408 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99999999988763 4468899999999999999999999999999874
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-13 Score=127.84 Aligned_cols=223 Identities=14% Similarity=0.084 Sum_probs=113.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI--ERS----EEIYLAL 368 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~--~p~----~~t~~~L 368 (592)
|..+...+...|++++|...|++..+.. .+..+|..+..+|...|++++|...+.+..+... .++ ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444444444444444444333 3334444444444444444444444444433210 011 2444445
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007695 369 LRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448 (592)
Q Consensus 369 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~ 448 (592)
...|...|++++|...++...... |+. ..+.+.|++++|...++.+....+ .+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCH
Confidence 555555555555555555544432 221 234444555666666655555321 1334455555556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 449 DKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFL 528 (592)
Q Consensus 449 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 528 (592)
++|...|++..+.. +.+..++..+..++...|++++|...+++..+.... +...+..+...|...|++++|...+++.
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66666666655432 224555666666666666666666666666655433 4666666677777777777777776665
Q ss_pred HHc
Q 007695 529 EAK 531 (592)
Q Consensus 529 ~~~ 531 (592)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-10 Score=131.81 Aligned_cols=314 Identities=12% Similarity=0.050 Sum_probs=245.3
Q ss_pred HHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 198 ILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDA 276 (592)
Q Consensus 198 l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A 276 (592)
+..++ ..|.+++|..+|++...+ ....+.++. ..++++.+.+.+... -+..+|..+..++.+.|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~-~~A~~VLie--~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVN-TSAVQVLIE--HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHHH--HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHH
Confidence 55666 899999999999997532 222344444 345566667666543 3466889999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC
Q 007695 277 ERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS 356 (592)
Q Consensus 277 ~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 356 (592)
.+.|.+. -|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. .
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 9999664 388889999999999999999999999887653 44444556999999999988644442 2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 357 GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436 (592)
Q Consensus 357 g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~ 436 (592)
.++...|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 346677888999999999999999999984 48999999999999999999999977 4678999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 007695 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516 (592)
Q Consensus 437 ~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g 516 (592)
.+-.+|...|++..|...... +..++..+..++..|.+.|.+++|..+++...... +-+...|+-|..+|++.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy- 1327 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF- 1327 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-
Confidence 999999999999999876654 34567788899999999999999999998887655 33667888888888875
Q ss_pred CHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHhCCCHHHHHH
Q 007695 517 IEKKALQALGFLEAKKEQM-------GPDDFERIINGLLAGGFLQDAQR 558 (592)
Q Consensus 517 ~~~~A~~~~~~m~~~~~~~-------~~~~~~~li~a~~~~g~~~~A~~ 558 (592)
+.++..+.++....+...| +...|..++-.|.+.|+++.|+.
T Consensus 1328 ~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3344333333333332222 34579999999999999999983
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-12 Score=123.76 Aligned_cols=199 Identities=18% Similarity=0.056 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
+++...+..+...+.+.|++++|...|++..+... .+...+..+..++.+.|++++|...|++..+.. +.+..++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 34556667777777777777777777777776532 266677777777777777777777777777653 4456677777
Q ss_pred HHHHHHc-----------CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 334 IMAYVNA-----------GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTL 402 (592)
Q Consensus 334 i~a~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 402 (592)
..++... |++++|+..|++..+... -+...+..+..+|...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 777777777766666432 245666666666667777777777776666665 55666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m 458 (592)
+..+|...|++++|...|++..+..+. +...+..+..++...|++++|+..|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666777777777777666664332 4555566666666666666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-12 Score=123.80 Aligned_cols=113 Identities=21% Similarity=0.151 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 446 NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 446 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
|++++|+..|++..+.. +-+...+..+..++...|++++|...|++..+.. .+...+..+..+|...|++++|...|
T Consensus 98 g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444444321 1123344444444444555555555555444444 24444555555555555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 007695 526 GFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGL 562 (592)
Q Consensus 526 ~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~ 562 (592)
++..+.. +-++..+..+...+...|++++|+..|++
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5544431 22344444455555555555555554444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-11 Score=117.31 Aligned_cols=202 Identities=12% Similarity=-0.026 Sum_probs=136.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
+...+..+...+...|++++|.+.|+.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34556777777777788888888777777653 2356677777777777777777777777776543 445667777777
Q ss_pred HHHHc-CCchHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 336 AYVNA-GQPKLGMSLVDMMITSGIERS-EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413 (592)
Q Consensus 336 a~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~ 413 (592)
.|... |++++|...++++.+.+..|+ ..++..+..++...|++++|...+..+.... +.+...+..+...|.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77777 777777777777776322222 5566667777777777777777777776654 44566677777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 414 ~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
++|...|++.....+..+...+..+...+...|+.+.|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777766643313555566666666667777777777766654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-12 Score=120.81 Aligned_cols=200 Identities=13% Similarity=0.007 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a 336 (592)
...|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4456777777778888888888888777653 2356777777777888888888888887776653 3466677777777
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
|...|++++|..+++++...+..| +...+..+...|...|++++|...+....... +.+..++..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776632233 45566666777777777777777777776654 4456666777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 416 A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
|...|+++..... .+...+..+...|...|+.++|..+++.+.+
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777665432 3455566666666677777777777776655
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-11 Score=119.16 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=97.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007695 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444 (592)
Q Consensus 365 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~ 444 (592)
+..+...+...|++++|...++.+.... +.+..++..+...|...|++++|...|+++..... .+...+..+...|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHH
Confidence 3444444444444444444444444332 23344444444445555555555555544444322 133444444455555
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 445 KNLLDKALNLLLELEKDGFEP-GPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQ 523 (592)
Q Consensus 445 ~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~ 523 (592)
.|++++|..+|+++...+..| +...+..+..++...|++++|...++++.+.... +...+..+...|...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555544422222 2344444555555555555555555555544322 45555555556666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 524 ~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.++.+... .+.+...+..+...+...|+.++|.++++++.+.
T Consensus 197 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 197 YYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66555543 2234445555555566666666666666665543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.2e-11 Score=116.46 Aligned_cols=227 Identities=13% Similarity=-0.038 Sum_probs=114.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN----AGQPKLGMSLVDMMITSGIERSEEIYL 366 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 366 (592)
+..++..+...|...|++++|...|++..+. .+..++..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555555555555555555555542 234445555555555 555555555555554443 444444
Q ss_pred HHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 367 ALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY 442 (592)
Q Consensus 367 ~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~ 442 (592)
.+...|.. .+++++|...|+.....+ +..++..+...|... .
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~-------------------------------~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG-------------------------------K 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC-------------------------------S
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC-------------------------------C
Confidence 44444544 455555555554444432 344444444444440 0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----
Q 007695 443 GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGR----LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR---- 514 (592)
Q Consensus 443 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~---- 514 (592)
...+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|..
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 198 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGA 198 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 00455555555555544433 33344444444444 555555555555555442 34455555555655
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHC
Q 007695 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 515 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~----~g~~~~A~~l~~~m~~~ 566 (592)
.+++++|...|++..+.+ ++..+..+...|.. .+++++|++.|++..+.
T Consensus 199 ~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 199 TKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 666666666666555542 14445555556655 56666666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-11 Score=114.08 Aligned_cols=201 Identities=14% Similarity=-0.022 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
..++..+...+...|++++|...++.+.... +.+..++..+...|...|++++|...|++...... .+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHH
Confidence 3444455555555555555555555555443 33445555555555555555555555555554322 244455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 442 YGKK-NLLDKALNLLLELEKDGFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519 (592)
Q Consensus 442 ~~~~-g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~ 519 (592)
|... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.... +...+..+...|...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 5566 666666666665554222222 345555555666666666666666665554332 4556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 520 KALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 520 ~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+|...++.+.......++..+..+...+...|+.+.|..+++.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666665542213455555555666666666666666666654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.1e-11 Score=125.07 Aligned_cols=306 Identities=14% Similarity=-0.009 Sum_probs=175.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNEN--------GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH-----G 322 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~--------g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g 322 (592)
....||.|...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...|++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3445777777777777777777777665431 11223556777777777777777777777665431 0
Q ss_pred --CCCCHHHHHHHHHHHHHc--CCchHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHcCCCC
Q 007695 323 --FQPDKKVYNSMIMAYVNA--GQPKLGMSLVDMMITSGIERSEEIYLALLRS---FAQCGDVRGAGQITNIMRIEEFQP 395 (592)
Q Consensus 323 --~~pd~~t~~~li~a~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~---~~~~g~~~~A~~~~~~m~~~g~~~ 395 (592)
......+++.+..++... +++++|+..|++..+.... +...+..+..+ +...++.++|.+.+++..... +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 011344555555555443 3566777777777664321 34444444333 334556666676666666554 44
Q ss_pred CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007695 396 TLESCTLLVEAYGQA----GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYT 471 (592)
Q Consensus 396 ~~~~~~~Li~~~~~~----g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 471 (592)
+..++..+...+... |++++|...+++.....+ .+...+..+...|...|++++|...|.+..+.. +-+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 555555555444443 455667777776665433 245566667777777777777777777766532 22344444
Q ss_pred HHHHHHHH-------------------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 472 VLVDWLGR-------------------LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 472 ~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
.+..+|.. .+..+.|...++...+.... +..++..+...|...|++++|...|++.....
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 44444322 12345666667666655433 44566777778888888888888888777653
Q ss_pred CCCCHH--HHHHHHH-HHHhCCCHHHHHHHHHHHHHC
Q 007695 533 EQMGPD--DFERIIN-GLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 533 ~~~~~~--~~~~li~-a~~~~g~~~~A~~l~~~m~~~ 566 (592)
..+... .+..+.. .+.+.|++++|++.|++....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 322111 1222322 234667788888887776653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-10 Score=114.66 Aligned_cols=225 Identities=14% Similarity=0.064 Sum_probs=186.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK----AGNLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
-+..++..+...+...|++++|.+.|++..+. -+...+..+...|.. .+++++|...|++..+.+ +..++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 36678888999999999999999999999984 367788889999999 999999999999999875 78899
Q ss_pred HHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 331 NSMIMAYVN----AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLESCTL 402 (592)
Q Consensus 331 ~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 402 (592)
..+...|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|...|+...+.+ +..++..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 999999999 999999999999999876 78899999999999 999999999999998875 6677888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007695 403 LVEAYGQ----AGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK----KNLLDKALNLLLELEKDGFEPGPATYTVLV 474 (592)
Q Consensus 403 Li~~~~~----~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 474 (592)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888888 888888888888887753 45666667777777 788888888887777653 245556666
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhcC
Q 007695 475 DWLGR----LQLINEAEQLLGKISELG 497 (592)
Q Consensus 475 ~~~~~----~g~~~~A~~l~~~m~~~g 497 (592)
..|.. .+++++|...+++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666 667777777777666654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-12 Score=122.48 Aligned_cols=28 Identities=18% Similarity=-0.045 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 504 IQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 504 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
+|..+...|...|++++|...|++..+.
T Consensus 223 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444555555555555555555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=128.28 Aligned_cols=249 Identities=11% Similarity=0.058 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN-LDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
...|+.+..++.+.|++++|+..|+++.+.... +...|+.+..++...|+ +++|+..|++..+.. +-+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 345777777888889999999999998886433 67888899999999996 999999999988764 557888999999
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ-AGDPD 414 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~-~g~~~ 414 (592)
++...|++++|+..|+++++.... +...|..+..++.+.|++++|...++++.... +.+..+|+.+..+|.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999886533 78888889999999999999999999988876 5678888888888888 56656
Q ss_pred HH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC------
Q 007695 415 QA-----RSNFDYMIRLGHKPDDRCTASMIAAYGKKN--LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ------ 481 (592)
Q Consensus 415 ~A-----~~lf~~m~~~g~~pd~~t~~~li~a~~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g------ 481 (592)
+| +..|++.....+. +...|+.+...+...| ++++|+..+..+ + ....+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 4777777775443 5667777777777777 577888777776 2 22344566777777776653
Q ss_pred ---CHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHH
Q 007695 482 ---LINEAEQLLGKI-SELGEAPPFKIQVSLCDMYA 513 (592)
Q Consensus 482 ---~~~~A~~l~~~m-~~~g~~p~~~~~~~Li~~~~ 513 (592)
.+++|..+++++ .+.... ....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTI-RKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHH
Confidence 246777777777 443322 3445555544443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-12 Score=128.72 Aligned_cols=250 Identities=13% Similarity=0.016 Sum_probs=122.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH
Q 007695 269 KENCLEDAERILKKMNENGIV---PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL 345 (592)
Q Consensus 269 ~~g~~~~A~~l~~~m~~~g~~---pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 345 (592)
..|++++|...|+++.+.... .+..+|..+...|...|++++|...|+++.+.. +.+..+|..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 345666666666666654211 134455566666666666666666666665543 3345566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|...|++..+.. +.+..++..+..+|.+.|++++|...++.+.... |+.......+..+...|++++|...|++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 666666665542 1244555555555556666666666665555542 2222222333333444555555555554444
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 007695 426 LGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQ 505 (592)
Q Consensus 426 ~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~ 505 (592)
... ++...+. ++..+...++.++|+..+....... |+. ...+..++
T Consensus 173 ~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~--~~~------------------------------~~~~~~~~ 218 (275)
T 1xnf_A 173 KSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDN--TSL------------------------------AEHLSETN 218 (275)
T ss_dssp HSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSH--HHH------------------------------HHHHHHHH
T ss_pred cCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhccc--ccc------------------------------cccccHHH
Confidence 321 1222222 3444444455555555554443321 100 00013455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVH 560 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~ 560 (592)
..+...|...|++++|...|++....+ | ..+.....++...|++++|++.+
T Consensus 219 ~~la~~~~~~g~~~~A~~~~~~al~~~--p--~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 219 FYLGKYYLSLGDLDSATALFKLAVANN--V--HNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--C--TTCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCC--c--hhHHHHHHHHHHHHHHHhhHHHH
Confidence 555566666666666666666555432 1 11223344445555555555444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=121.33 Aligned_cols=250 Identities=13% Similarity=-0.010 Sum_probs=195.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP--DKKVYNSMIM 335 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~li~ 335 (592)
..+......+...|++++|...|++..+.... +...+..+..+|...|++++|...|++..+.+-.+ ...+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34556778889999999999999999886432 55578889999999999999999999998743122 2345889999
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
.|...|++++|+..|++..+... .+..++..+...|...|++++|...+++..... +.+..++..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988643 367899999999999999999999999988764 5567888888834445569999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHC-CCCCC------HHHHHHHHHHHHHcCCHHH
Q 007695 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL---LDKALNLLLELEKD-GFEPG------PATYTVLVDWLGRLQLINE 485 (592)
Q Consensus 416 A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~---~~~A~~l~~~m~~~-g~~p~------~~ty~~li~~~~~~g~~~~ 485 (592)
|...|++.....+. +...+..+..++...|+ +++|...|++..+. .-.|+ ...|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999885432 46777778888888887 78888888887654 11233 2577888899999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 486 AEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 486 A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
|...++++.+.... +......+....
T Consensus 240 A~~~~~~al~~~p~-~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNILALDPT-NKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHC---
T ss_pred HHHHHHHHHhcCcc-HHHHHHHhhhhh
Confidence 99999999887544 555555554433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-10 Score=131.29 Aligned_cols=315 Identities=15% Similarity=0.133 Sum_probs=239.5
Q ss_pred HcccccCCchhHHHHHHhhc-CCC-----HhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 199 LSLEKEEDPSPLLAEWKELL-QPS-----RIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC 272 (592)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~-~p~-----~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~ 272 (592)
..+...|.+.+|+++++++. .|+ ...-+.++.+....+.......+...- .....-+...+...|.
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd--------~~d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD--------NYDAPDIANIAISNEL 1064 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhh--------hccHHHHHHHHHhCCC
Confidence 34448999999999999983 444 233444444433333333333333221 1123457788889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHH
Q 007695 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDM 352 (592)
Q Consensus 273 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~ 352 (592)
+++|..+|++... .....+.++ -..+++++|.++.++.. +..+|..+..++...|++++|...|.+
T Consensus 1065 yEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 9999999999631 222233333 27889999999998663 577999999999999999999999966
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 007695 353 MITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD 432 (592)
Q Consensus 353 m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~ 432 (592)
. -|...|..++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+. . .++.
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence 4 378899999999999999999999999877764 34344446999999999988644432 2 2566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007695 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMY 512 (592)
Q Consensus 433 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~ 512 (592)
..|..+...|...|++++|..+|... ..|..+..+|.+.|+++.|.+.+++.. +..+|..+..+|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHH
Confidence 77888999999999999999999974 489999999999999999999998772 678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 513 ARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 513 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
...|++..|...... ...+++.+..++..|.+.|.+++|+.+++... |+.|..
T Consensus 1261 ve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL--~LeraH 1313 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL--GLERAH 1313 (1630)
T ss_pred hhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--ccChhH
Confidence 999999999887553 34467778899999999999999999997775 344444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-12 Score=121.57 Aligned_cols=201 Identities=14% Similarity=0.091 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 334 (592)
.....|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344445556666666666666666666665542 2245556666666666666666666666655442 33455555555
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~ 414 (592)
..|...|++++|..+++++.+.. +.+...+..+...+.+.|++++|...++++.... +.+...+..+...|.+.|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666555542 2244555555555555555555555555555443 334455555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
+|...|++...... .+..++..+..+|...|++++|...+++..+
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 55555555544322 1344444455555555555555555555444
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-12 Score=120.23 Aligned_cols=195 Identities=12% Similarity=0.025 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
..+...+...|++++|..+|+++.+.. +.+..++..+...|...|++++|...++...... +.+..++..+...|...
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ---------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 333333334444444444444433321 1133333444444444444444444444443332 22334444444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 411 GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 411 g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 490 (592)
|++++|...|+++..... .+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...+
T Consensus 105 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp TCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444444444444443221 123333334444444444444444444433321 122333444444444444444444444
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 491 GKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 491 ~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
+++...... +..++..+...|...|++++|...++++.+
T Consensus 183 ~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 183 AAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 444433221 344444444444444444444444444444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-12 Score=125.30 Aligned_cols=247 Identities=13% Similarity=-0.018 Sum_probs=185.7
Q ss_pred hhCHHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 234 EQNTQLYFKVAELVLSEESFQT--NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRA 311 (592)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~p--~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A 311 (592)
.++.+.+...+...+......+ +..+|..+...+...|++++|...|+++.+... .+..+|..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHH
Confidence 4567888888888876532222 466789999999999999999999999988643 3788999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 007695 312 KEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 312 ~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~ 391 (592)
...|++..+.. +.+..++..+..+|...|++++|...|+++.+.. |+.......+..+...|++++|...+......
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999998764 4568899999999999999999999999998853 44445555556667789999999999888776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007695 392 EFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP---DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468 (592)
Q Consensus 392 g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p---d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ 468 (592)
. +++...+. ++..+...++.++|...+.......... +..++..+..+|...|++++|...|++..... |+.
T Consensus 174 ~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp S-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred C-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 4 44544444 7777888889999999998886532210 14667777778888888888888888877643 422
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLL 490 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~ 490 (592)
+.....++...|++++|...+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 222234555666666665554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-11 Score=127.49 Aligned_cols=249 Identities=11% Similarity=0.027 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-chHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ-PKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 292 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
...|+.+...+.+.|++++|+..|++..+.. +-+..+|+.+..++...|+ +++|+..|++.+..... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567778888899999999999999998764 5568899999999999997 99999999999987543 7889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK-KNLLD 449 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~-~g~~~ 449 (592)
++...|++++|...|+.+.... +-+..+|..+..++.+.|++++|+..|+++....+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999887 678999999999999999999999999999997554 77889989889988 66657
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC------
Q 007695 450 KA-----LNLLLELEKDGFEPGPATYTVLVDWLGRLQ--LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG------ 516 (592)
Q Consensus 450 ~A-----~~l~~~m~~~g~~p~~~ty~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g------ 516 (592)
+| +..|++..+.. +-+...|..+..++...| ++++|...+.++ +.. ..+...+..+..+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccc
Confidence 77 47788777642 234677888888888877 588899888887 433 336788888888888874
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 007695 517 ---IEKKALQALGFL-EAKKEQMGPDDFERIINGLL 548 (592)
Q Consensus 517 ---~~~~A~~~~~~m-~~~~~~~~~~~~~~li~a~~ 548 (592)
..++|..+++++ .+. .+.....|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~-DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK-DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHHH
Confidence 258899999988 554 3334556776666554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.3e-12 Score=129.73 Aligned_cols=275 Identities=12% Similarity=-0.015 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDI----VTSTVLVHMYSKAGNLDRAKEAFESLRSH----GF-QPDKKV 329 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~t 329 (592)
.+..+...+...|++++|...|+++.+.+.. +. ..|..+...|...|++++|...|++..+. +- .....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566677777888888888777765322 22 35667777777777777777777776532 10 112345
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhCCC-----------------HHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSG-----IERSEEIYLALLRSFAQCGD-----------------VRGAGQITNI 387 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~Ll~~~~~~g~-----------------~~~A~~~~~~ 387 (592)
+..+...|...|++++|...+.+..... ......++..+...|...|+ +++|...+.+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5666666666677777766666654421 01112344455555555555 5555555444
Q ss_pred HHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 388 MRIE----EFQ-PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 388 m~~~----g~~-~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
.... +-. ....++..+...|...|++++|...|++...... .++..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------- 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------- 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------------------
Confidence 3321 100 0122344444444444444444444444433110 00100
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---
Q 007695 462 GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA-----PPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE--- 533 (592)
Q Consensus 462 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~--- 533 (592)
.....+..+..+|...|++++|...+++....... ....++..+...|...|++++|...+++......
T Consensus 261 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 261 ---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp ---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 00124444455555555555555555544322110 0134455556666666666666666655443210
Q ss_pred -C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 534 -Q-MGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 534 -~-~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
. ....++..+...|...|++++|.+.|++..+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 0122455566666666666666666666554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-11 Score=125.85 Aligned_cols=276 Identities=12% Similarity=-0.035 Sum_probs=153.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRSH----GFQP 325 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~p 325 (592)
......+..+...+.+.|++++|...|+++.+.+.. + ..+|..+...|...|++++|...|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445556667777778888888888888887775322 3 346777777888888888888888776432 1111
Q ss_pred -CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhCCC--------------------HH
Q 007695 326 -DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-ERS----EEIYLALLRSFAQCGD--------------------VR 379 (592)
Q Consensus 326 -d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~Ll~~~~~~g~--------------------~~ 379 (592)
...++..+...|...|++++|...+.+...... .++ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 234566677777777777777777777665321 011 2355566666666666 66
Q ss_pred HHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHH
Q 007695 380 GAGQITNIMRIE----EF-QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCTASMIAAYGKKNLLD 449 (592)
Q Consensus 380 ~A~~~~~~m~~~----g~-~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~ 449 (592)
+|...+...... +. +....++..+...|...|++++|...|++...... .++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 666666655432 10 01133455566666666666666666665544210 111 124455555566666666
Q ss_pred HHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCCHH
Q 007695 450 KALNLLLELEKD----GFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISELGEA-PP----FKIQVSLCDMYARAGIEK 519 (592)
Q Consensus 450 ~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~~Li~~~~~~g~~~ 519 (592)
+|...+++.... +..+. ..++..+...|...|++++|...+++....... .+ ..++..+...|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 666666554432 11000 234445555555555555555555554432110 01 334445555555555555
Q ss_pred HHHHHHHHHHH
Q 007695 520 KALQALGFLEA 530 (592)
Q Consensus 520 ~A~~~~~~m~~ 530 (592)
+|...+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-11 Score=126.64 Aligned_cols=262 Identities=15% Similarity=0.033 Sum_probs=134.3
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHc
Q 007695 233 REQNTQLYFKVAELVLSEESFQTN--VRDYSKLIDAHAKENCLEDAERILKKMNEN----GIVP-DIVTSTVLVHMYSKA 305 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~--~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~~~~Li~~~~~~ 305 (592)
..++.+.+...++..+....-.+. ...|..+...+...|++++|...|++.... +-.| ...++..+...|...
T Consensus 21 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 445566666666655544211111 234555666666666666666666654321 1111 133455566666666
Q ss_pred CCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC--------------------chHHHHHHHHHHHC----
Q 007695 306 GNLDRAKEAFESLRSHGF-QPD----KKVYNSMIMAYVNAGQ--------------------PKLGMSLVDMMITS---- 356 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~g~-~pd----~~t~~~li~a~~~~g~--------------------~~~A~~l~~~m~~~---- 356 (592)
|++++|...|++.....- .++ ..++..+...|...|+ +++|...+.+....
T Consensus 101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 180 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666666665543200 011 2355556666666666 66666666554431
Q ss_pred CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C
Q 007695 357 GIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF-QPT----LESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-K 429 (592)
Q Consensus 357 g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~ 429 (592)
+..+ ...++..+...|...|++++|...+++.....- .++ ..++..+...|...|++++|...|++...... .
T Consensus 181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 260 (406)
T 3sf4_A 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 260 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence 1011 123455556666666666666666665543210 111 22555566666666666666666665544211 0
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 430 PD----DRCTASMIAAYGKKNLLDKALNLLLELEKD----GFEPG-PATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 430 pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
++ ..++..+...|...|++++|...+.+..+. +..+. ..++..+..+|...|++++|...+++..
T Consensus 261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 334555556666666666666666655432 11111 3445555666666666666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-11 Score=122.07 Aligned_cols=275 Identities=13% Similarity=-0.019 Sum_probs=146.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRSH----GFQ-PDKKVY 330 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~-pd~~t~ 330 (592)
+......+...|++++|...|+++.+.... + ...+..+...|...|++++|...|++.... +-. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334445556666666666666666554211 2 244555666666666666666666554321 100 112344
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITSGI-ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
..+...|...|++++|...+.+..+... .++.. ....++..+...|..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence 4444555555555555555544433110 00100 002244445555555
Q ss_pred cCC--------------------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007695 410 AGD--------------------PDQARSNFDYMIRL----GHKP-DDRCTASMIAAYGKKNLLDKALNLLLELEKD--- 461 (592)
Q Consensus 410 ~g~--------------------~~~A~~lf~~m~~~----g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~--- 461 (592)
.|+ +++|...+++.... +..+ ...++..+...|...|++++|...+++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 55555555444321 1001 1234555555666666666666666665432
Q ss_pred -CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 007695 462 -GFE-PGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA-PP----FKIQVSLCDMYARAGIEKKALQALGFLEAKKEQ 534 (592)
Q Consensus 462 -g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~ 534 (592)
+.. ....++..+...+...|++++|...+++....... .+ ..++..+...|...|++++|...+++.......
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 100 01235666666777777777777777765532111 11 456667777788888888888887766542110
Q ss_pred -CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 535 -MG----PDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 535 -~~----~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.+ ..++..+...|...|++++|.+.+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 335667778888888888888888887754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-11 Score=127.92 Aligned_cols=227 Identities=12% Similarity=0.014 Sum_probs=161.8
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHc
Q 007695 233 REQNTQLYFKVAELVLSEESFQTN--VRDYSKLIDAHAKENCLEDAERILKKMNEN----GI-VPDIVTSTVLVHMYSKA 305 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~--~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~~~~~Li~~~~~~ 305 (592)
..++.+.+...++..+....-.+. ...|..+...|...|++++|...|++..+. +- +....++..+...|...
T Consensus 60 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 667899999999988875322121 146888999999999999999999987653 11 22456788899999999
Q ss_pred CCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCC-----------------chHHHHHHHHHHHC----CC-
Q 007695 306 GNLDRAKEAFESLRSH----G-FQPDKKVYNSMIMAYVNAGQ-----------------PKLGMSLVDMMITS----GI- 358 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~----g-~~pd~~t~~~li~a~~~~g~-----------------~~~A~~l~~~m~~~----g~- 358 (592)
|++++|...|++.... + ......++..+...|...|+ +++|...+.+..+. +.
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~ 219 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999987643 1 12234578889999999999 99999999887552 11
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-
Q 007695 359 ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF-QPT----LESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK-PD- 431 (592)
Q Consensus 359 ~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~-pd- 431 (592)
.....++..+...|...|++++|...+++.....- ..+ ..++..+...|...|++++|...|++....... .+
T Consensus 220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 11245788889999999999999999998875421 012 236677777888888888888888777653110 11
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 432 ---DRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 432 ---~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
..++..+...|...|++++|...+++..
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2345555556666666666666665544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.9e-11 Score=121.07 Aligned_cols=269 Identities=13% Similarity=-0.009 Sum_probs=167.4
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHc
Q 007695 233 REQNTQLYFKVAELVLSEESFQTN--VRDYSKLIDAHAKENCLEDAERILKKMNEN----GIVP-DIVTSTVLVHMYSKA 305 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~--~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~~~~Li~~~~~~ 305 (592)
..++.+.+...++..+....-.+. ...|..+...+...|++++|.+.+++.... +..| ...++..+...|...
T Consensus 17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 668899999999988875322211 367889999999999999999999987543 1111 255788899999999
Q ss_pred CCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCC--------------------chHHHHHHHHHHHCCCCC
Q 007695 306 GNLDRAKEAFESLRSHGF-QPD----KKVYNSMIMAYVNAGQ--------------------PKLGMSLVDMMITSGIER 360 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~g~-~pd----~~t~~~li~a~~~~g~--------------------~~~A~~l~~~m~~~g~~p 360 (592)
|++++|...|++..+..- .++ ..++..+...|...|+ +++|...+++....
T Consensus 97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~---- 172 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL---- 172 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH----
T ss_pred cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH----
Confidence 999999999998764210 122 3367777777877777 66666665554321
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHH
Q 007695 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCT 435 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~ 435 (592)
..... .......++..+...|...|++++|...+++...... .++ ..++
T Consensus 173 ------------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 226 (338)
T 3ro2_A 173 ------------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226 (338)
T ss_dssp ------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ------------------------HHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 10000 0001123445555555566666666666555443100 011 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC-CCHHHH
Q 007695 436 ASMIAAYGKKNLLDKALNLLLELEKD----GFEP-GPATYTVLVDWLGRLQLINEAEQLLGKISELG----EA-PPFKIQ 505 (592)
Q Consensus 436 ~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~-p~~~~~ 505 (592)
..+...|...|++++|...+++.... +..+ ...++..+...+...|++++|...+++..... .. ....++
T Consensus 227 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 55566666666776666666665432 1111 13456666677777777777777777665321 10 113466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..+...|...|++++|...+++....
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67788888888888888888877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-10 Score=118.81 Aligned_cols=294 Identities=10% Similarity=0.008 Sum_probs=200.9
Q ss_pred HHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH--HHcCCHHHHH-----------HHHHHHHhCCCCCCHHH
Q 007695 267 HAKENCLEDAERILKKMNEN--GIVPD--IVTSTVLVHMY--SKAGNLDRAK-----------EAFESLRSHGFQPDKKV 329 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~--g~~pd--~~~~~~Li~~~--~~~g~~~~A~-----------~~~~~m~~~g~~pd~~t 329 (592)
+.+.+++++|..+++.+.+. .+..| ...|-.++..- .-.++++.+. +.++.+... +.+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchh
Confidence 45688889998888887653 22223 33333333221 1223344444 666665432 111121
Q ss_pred ------HHHHHHHHHHcCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C---
Q 007695 330 ------YNSMIMAYVNAGQPKLGMSLVDMMITS----GIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEE--F--- 393 (592)
Q Consensus 330 ------~~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g--~--- 393 (592)
+......+...|++++|...+++.... +-.+ ...++..+...|...|+++.|...+.+..... .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556677889999999999988763 1111 24678888889999999999999888876541 1
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 007695 394 -QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCTASMIAAYGKKNLLDKALNLLLELEKD----GF 463 (592)
Q Consensus 394 -~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~ 463 (592)
+....+++.+...|...|++++|...|++...... .++ ..++..+..+|...|++++|...|.+..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 11245788888999999999999999988775311 122 246777888999999999999999887662 33
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCC
Q 007695 464 -EPGPATYTVLVDWLGRLQLINEAEQLLGKISELG----EAPPFKIQVSLCDMYARAGI---EKKALQALGFLEAKKEQM 535 (592)
Q Consensus 464 -~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~~~~~Li~~~~~~g~---~~~A~~~~~~m~~~~~~~ 535 (592)
+....++..+..++.+.|++++|...+++..+.. .......+..+...|...|+ +++|..+++.. +..+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHH
Confidence 3346778889999999999999999999876431 11122335677888888888 77777777765 2222
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 536 -GPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 536 -~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
....+..+...|...|++++|.+.|++...
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234577788999999999999999998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-10 Score=103.27 Aligned_cols=166 Identities=15% Similarity=0.117 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
+..+|..+...|.+.|++++|.+.|++..+.... +..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4455666666666666666666666666654322 55566666666666666666666666665443 334555555666
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
.+...++++.|...+.+..... +-+...+..+..+|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665543 2245556666666666666666666666665554 4455566666666666666666
Q ss_pred HHHHHHHHHH
Q 007695 416 ARSNFDYMIR 425 (592)
Q Consensus 416 A~~lf~~m~~ 425 (592)
|...|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666555
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.8e-10 Score=102.91 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
++..|..+...|...|++++|...|++..+.. +-+..+|..+..+|.+.|++++|...+........ -+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 56678888888888888888888888877654 44677788888888888888888888887776543 35667777777
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 450 (592)
.+...++++.+...+....... +.+..++..+...|.+.|++++|+..|++..+..+. +..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 7788888888888888777665 556777777888888888888888888877775432 56677777777888888888
Q ss_pred HHHHHHHHHH
Q 007695 451 ALNLLLELEK 460 (592)
Q Consensus 451 A~~l~~~m~~ 460 (592)
|+..|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877766
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-09 Score=108.15 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCc-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007695 309 DRAKEAFESLRSHGFQPDKKVYNSMIMAYVN-------AGQP-------KLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374 (592)
Q Consensus 309 ~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~-------~g~~-------~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 374 (592)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++.+..-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665532 4455566666665543 3554 5566666665552111234455555555666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLE-SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAY-GKKNLLDKAL 452 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~-~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~-~~~g~~~~A~ 452 (592)
.|++++|..+|++..... +.+.. +|..++..+.+.|++++|..+|++..+..+ ++...|....... ...|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666555432 11222 555555555555666666666655555322 1222232222111 1245555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG-EAP--PFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 453 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
.+|+...+.. +-+...+..++..+.+.|++++|..+|++..... ..| +...|..++..+.+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555544421 1234444455555555555555555555555431 122 23445555555555555555555555554
Q ss_pred H
Q 007695 530 A 530 (592)
Q Consensus 530 ~ 530 (592)
+
T Consensus 269 ~ 269 (308)
T 2ond_A 269 T 269 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-09 Score=107.36 Aligned_cols=220 Identities=9% Similarity=0.007 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 274 EDAERILKKMNENGIVPDIVTSTVLVHMYSK-------AGNL-------DRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 274 ~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
++|..+|++..... +-+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888887752 3377788877777653 5775 8899999998873114466788899999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 007695 340 AGQPKLGMSLVDMMITSGIERS-EE-IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG-QAGDPDQA 416 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~~p~-~~-t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~-~~g~~~~A 416 (592)
.|++++|..+|++.++. .|+ .. +|..+...+.+.|++++|..+|++..+.. +.+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999874 343 33 78888888999999999999999988765 445555554444432 36999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDG-FEP--GPATYTVLVDWLGRLQLINEAEQLLGKI 493 (592)
Q Consensus 417 ~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g-~~p--~~~ty~~li~~~~~~g~~~~A~~l~~~m 493 (592)
..+|+...+..+. +...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988875332 67788888888899999999999999988863 454 4677888888888899999999999988
Q ss_pred HhcCC
Q 007695 494 SELGE 498 (592)
Q Consensus 494 ~~~g~ 498 (592)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-10 Score=121.18 Aligned_cols=188 Identities=14% Similarity=0.028 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 364 IYLALLRSFAQCG---DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA----GDPDQARSNFDYMIRLGHKPDDRCTA 436 (592)
Q Consensus 364 t~~~Ll~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~----g~~~~A~~lf~~m~~~g~~pd~~t~~ 436 (592)
.+..|...|...| +.++|...|+.....| +++...+..|..+|... +++++|...|++.. . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 4444444555555 4555555555555444 34444434444444332 34555555555444 1 1222333
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 007695 437 SMIAA-Y--GKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ-----LINEAEQLLGKISELGEAPPFKIQVSL 508 (592)
Q Consensus 437 ~li~a-~--~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~~~~~L 508 (592)
.+-.. | ...+++++|+.+|++..+.| +...+..|...|. .| ++++|...|++.. .| +...+..|
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHH
Confidence 33332 2 23455555555555544433 3333444444443 22 5555555555444 21 34444444
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 007695 509 CDMYAR----AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLA----GGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 509 i~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~----~g~~~~A~~l~~~m~~~g 567 (592)
..+|.. ..++++|..+|++..+.+. +.....|...|.. ..+.++|...|+...+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 444433 2255555555555444332 2223334444432 234455555555444443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3e-10 Score=121.46 Aligned_cols=196 Identities=11% Similarity=0.033 Sum_probs=113.7
Q ss_pred CHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 361 SEEIYLALLRSFAQCGDV-RGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMI 439 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li 439 (592)
+...+..+...|...|++ ++|...|++..+.. +.+..+|..+...|.+.|++++|...|++..+. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 455555555555555555 55555555555543 334555666666666666666666666665553 24445555555
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCCC--C
Q 007695 440 AAYGKK---------NLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRL--------QLINEAEQLLGKISELGEA--P 500 (592)
Q Consensus 440 ~a~~~~---------g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~--p 500 (592)
.+|... |++++|+..|++..+.. +-+...+..+..+|... |++++|...|++..+.... -
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 555555 66666666666655532 22345555566666555 6666666666666654320 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
+...|..+..+|...|++++|...|++..+.. +-++..+..+..++...|++++|++.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666666666666777777776666666542 2345556666666666666666665443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=4e-11 Score=119.19 Aligned_cols=170 Identities=14% Similarity=0.081 Sum_probs=124.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------C
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNEN-------GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH------G 322 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~------g 322 (592)
+..++..+...+...|++++|..+|+++.+. ..+....++..+...|...|++++|...|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4566888889999999999999999988763 22334667888889999999999999999887653 1
Q ss_pred -CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Q 007695 323 -FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS------GI-ERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE--- 391 (592)
Q Consensus 323 -~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~------g~-~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~--- 391 (592)
.+....++..+...|...|++++|...+++..+. +. +....++..+...|...|++++|...++.....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223557778888888888888888888887653 21 223455677777888888888888888777654
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 392 ---EFQP-TLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 392 ---g~~~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+..| ...++..+...|...|++++|...|+++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 245677777778888888888888877765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=4.9e-10 Score=119.80 Aligned_cols=213 Identities=11% Similarity=-0.001 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHH
Q 007695 273 LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL-DRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVD 351 (592)
Q Consensus 273 ~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~-~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 351 (592)
++++.+.++...... +.+...+..+...|...|++ ++|...|++..+.. +.+..+|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544432 22555666666666666666 66666666665542 3345566666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CCHH
Q 007695 352 MMITSGIERSEEIYLALLRSFAQC---------GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA--------GDPD 414 (592)
Q Consensus 352 ~m~~~g~~p~~~t~~~Ll~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~--------g~~~ 414 (592)
+..+. .|+...+..+...|... |++++|...|++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66553 24455555566666555 55555555555555543 33455555555555555 4455
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
+|...|++.....+. ..-+...|..+..+|...|++++|...|++..
T Consensus 239 ~A~~~~~~al~~~p~---------------------------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 239 QALSAYAQAEKVDRK---------------------------------ASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHHHHHHHHHHHCGG---------------------------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---------------------------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555544442110 00234444555555555555555555555554
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 495 ELGEAPPFKIQVSLCDMYARAGIEKKALQA 524 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~ 524 (592)
+.... +...+..+..++...|++++|...
T Consensus 286 ~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 286 ALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44322 444455555555555555555543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.4e-10 Score=113.80 Aligned_cols=230 Identities=11% Similarity=-0.080 Sum_probs=162.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC--CC----CCHHHHH
Q 007695 298 LVHMYSKAGNLDRAKEAFESLRSH----GFQP-DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG--IE----RSEEIYL 366 (592)
Q Consensus 298 Li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g--~~----p~~~t~~ 366 (592)
....+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|...+.+..+.- .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556667788888888888887653 1111 23577788888888888888888888776521 11 1235677
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 007695 367 ALLRSFAQCGDVRGAGQITNIMRIEEF-QPT----LESCTLLVEAYGQAGDPDQARSNFDYMIRL----GH-KPDDRCTA 436 (592)
Q Consensus 367 ~Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~----g~-~pd~~t~~ 436 (592)
.+...|...|++++|...+.+.....- ..+ ..++..+...|...|++++|...|++.... +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888888888999999888887764310 111 247788888899999999999998887762 22 22356677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC-CHHHHHHH
Q 007695 437 SMIAAYGKKNLLDKALNLLLELEKD----GFEPGPATYTVLVDWLGRLQL---INEAEQLLGKISELGEAP-PFKIQVSL 508 (592)
Q Consensus 437 ~li~a~~~~g~~~~A~~l~~~m~~~----g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p-~~~~~~~L 508 (592)
.+..+|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888889999999999988886653 111122345667777778888 66677766655 2222 23567788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 007695 509 CDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~ 530 (592)
...|...|++++|...+++...
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999987765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-10 Score=111.61 Aligned_cols=239 Identities=9% Similarity=0.029 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------C
Q 007695 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-------GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE------E 392 (592)
Q Consensus 326 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~------g 392 (592)
+..++..+...|...|++++|..+++++.+. .......++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4678899999999999999999999999873 23335677888999999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007695 393 F-QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL------GHKP-DDRCTASMIAAYGKKNLLDKALNLLLELEKD--- 461 (592)
Q Consensus 393 ~-~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~------g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~--- 461 (592)
- +....++..+...|...|++++|...|++.... +..| ....+..+...|...|++++|..+|++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223677889999999999999999999988764 2222 3456778888999999999999999998764
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCC-------HHHHHHHHHHHHHcCCHHHHHH
Q 007695 462 ---GFEP-GPATYTVLVDWLGRLQLINEAEQLLGKISEL-------GEAPP-------FKIQVSLCDMYARAGIEKKALQ 523 (592)
Q Consensus 462 ---g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~-------~~~~~~Li~~~~~~g~~~~A~~ 523 (592)
+..| ...++..+..++...|++++|...++++.+. ...+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2123 2457888899999999999999999998753 11111 1122222333334445555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 524 ALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 524 ~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
.++..... .+....+|..+..+|.+.|++++|.++|++..+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555432 222455788899999999999999999998865
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-09 Score=113.72 Aligned_cols=287 Identities=13% Similarity=0.042 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHH
Q 007695 259 DYSKLIDAHAKENCL---EDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-----NLDRAKEAFESLRSHGFQPDKKVY 330 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-----~~~~A~~~~~~m~~~g~~pd~~t~ 330 (592)
.+..|...|...|+. ++|...|++..+. +...+..|...+...+ ++++|...|++..+.|. ++ .+
T Consensus 37 A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~ 109 (452)
T 3e4b_A 37 AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE-GN--TL 109 (452)
T ss_dssp GGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC-SS--CH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC-HH--HH
Confidence 344555556667777 8999999988764 5555666666555554 78899999999998762 33 67
Q ss_pred HHHHHHHHHcCCch---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 331 NSMIMAYVNAGQPK---LGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 331 ~~li~a~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..|...|...+... ++.+.+......| +......|...|...+.++.+......+.+.-...+..++..|...|
T Consensus 110 ~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~ 186 (452)
T 3e4b_A 110 IPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVY 186 (452)
T ss_dssp HHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77788887765543 4556666665555 34567777888888775544443332222221123334888999999
Q ss_pred HHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--
Q 007695 408 GQAG---DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK----NLLDKALNLLLELEKDGFEPGPATYTVLVDW-L-- 477 (592)
Q Consensus 408 ~~~g---~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~-- 477 (592)
.+.| +.++|...|++....|. ++...+..+...|... +++++|+.+|+... . -+...+..+... +
T Consensus 187 ~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 187 QKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDF 261 (452)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHS
T ss_pred HHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhC
Confidence 9999 99999999999998776 3555555566677554 79999999999987 3 345556666655 3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 007695 478 GRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG-----IEKKALQALGFLEAKKEQMGPDDFERIINGLLA--- 549 (592)
Q Consensus 478 ~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~--- 549 (592)
...+++++|...|++..+.| +...+..|..+|. .| ++++|...|++.. . -++..+..|...|..
T Consensus 262 ~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g 333 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYL 333 (452)
T ss_dssp GGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCC
Confidence 46899999999999999877 6788888888887 56 9999999999887 3 356777778877776
Q ss_pred -CCCHHHHHHHHHHHHHCCC
Q 007695 550 -GGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 550 -~g~~~~A~~l~~~m~~~g~ 568 (592)
..+.++|.+.|++..+.|.
T Consensus 334 ~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 334 GKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp SSCCHHHHHHHHHHHHTTTC
T ss_pred CCcCHHHHHHHHHHHHhhCh
Confidence 3499999999999888765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.6e-09 Score=108.43 Aligned_cols=310 Identities=10% Similarity=-0.040 Sum_probs=211.5
Q ss_pred CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH--HHcCCHHHHH---------HHH
Q 007695 253 FQTNVRDYSKLIDAH--AKENCLEDAERILKKMNEN--GIVPD--IVTSTVLVHMY--SKAGNLDRAK---------EAF 315 (592)
Q Consensus 253 ~~p~~~~y~~Li~~~--~~~g~~~~A~~l~~~m~~~--g~~pd--~~~~~~Li~~~--~~~g~~~~A~---------~~~ 315 (592)
..|+..+-+.|-..| .+.+++++|.++++.+.+. .+..| ...|-.|+..- .-.+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 346666666666666 7899999999999987653 22223 33344444321 1112222222 556
Q ss_pred HHHHhCCCCCC-H---HHHHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 316 ESLRSHGFQPD-K---KVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-ERS----EEIYLALLRSFAQCGDVRGAGQITN 386 (592)
Q Consensus 316 ~~m~~~g~~pd-~---~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~Ll~~~~~~g~~~~A~~~~~ 386 (592)
+.+.....+.+ . ..|......+...|++++|...|++...... .++ ..++..+...|...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 55543210101 1 1223344556789999999999999876421 122 4578888999999999999999998
Q ss_pred HHHHcC--CC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 007695 387 IMRIEE--FQ---P-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCTASMIAAYGKKNLLDKALNLL 455 (592)
Q Consensus 387 ~m~~~g--~~---~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~~A~~l~ 455 (592)
+..... .. + ...+++.+...|...|++++|...|++...... .++ ..++..+..+|...|++++|...|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 876531 11 1 256788899999999999999999988766310 112 346777888999999999999999
Q ss_pred HHHHHC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHcCC---HHHHHHH
Q 007695 456 LELEKD----GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE----APPFKIQVSLCDMYARAGI---EKKALQA 524 (592)
Q Consensus 456 ~~m~~~----g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~~~~~Li~~~~~~g~---~~~A~~~ 524 (592)
.+..+. +.+....++..+..++.+.|++++|...+++..+... ......+..+...|...++ +.+|...
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 988761 2223367888899999999999999999999876422 2223456666777777888 7777777
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 525 LGFLEAKKEQM-GPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 525 ~~~m~~~~~~~-~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
++.. +..+ ....+..+...|...|++++|.+.|++...
T Consensus 326 ~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7653 2222 233567788999999999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-08 Score=103.68 Aligned_cols=299 Identities=14% Similarity=0.041 Sum_probs=208.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH----HHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIV----TSTVLVHMYSKAGNLDRAKEAFESLRSHGF-QPDK----KVY 330 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~t~ 330 (592)
+......+...|++++|...+++........+.. +++.+...+...|++++|...+++.....- .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556778999999999999988764332332 466777888899999999999988764210 1222 346
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CCHHH
Q 007695 331 NSMIMAYVNAGQPKLGMSLVDMMITS----GIE--R-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ----PTLES 399 (592)
Q Consensus 331 ~~li~a~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~ 399 (592)
+.+...+...|++++|...+++.... +.. | ...++..+...+...|++++|...+.+.....-. ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788889999999999999888653 221 2 2455677888899999999999999988765321 12457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD--DRCTA----SMIAAYGKKNLLDKALNLLLELEKDGFEP---GPATY 470 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~t~~----~li~a~~~~g~~~~A~~l~~~m~~~g~~p---~~~ty 470 (592)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+.+.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 78888899999999999999998876321111 11111 23344778999999999998876543211 13356
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 471 TVLVDWLGRLQLINEAEQLLGKISEL----GEAPPF-KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545 (592)
Q Consensus 471 ~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 545 (592)
..+...+...|++++|...++..... +..++. .++..+..++...|+.++|...+++....... ...+.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~------~g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR------TGFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------HCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc------ccHHH
Confidence 67788888999999999999887643 222122 36667778888999999999999888764211 12334
Q ss_pred HHHhCCCHHHHHHHHHHHHHC
Q 007695 546 GLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 546 a~~~~g~~~~A~~l~~~m~~~ 566 (592)
.+...| +....+++.+...
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHT
T ss_pred HHHHcc--HHHHHHHHHHHhC
Confidence 455555 6677788887765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-09 Score=96.12 Aligned_cols=163 Identities=18% Similarity=0.166 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
.|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34555556666666666666666655432 2245556666666666666666666666655442 334555556666666
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARS 418 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 418 (592)
..|++++|...++++.... +.+...+..+...+...|++++|...++...... +.+..++..+...|...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655542 2245555555555556666666666655555543 3345555555555555555555555
Q ss_pred HHHHHHH
Q 007695 419 NFDYMIR 425 (592)
Q Consensus 419 lf~~m~~ 425 (592)
.+++...
T Consensus 166 ~~~~~~~ 172 (186)
T 3as5_A 166 HFKKANE 172 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-09 Score=95.62 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 293 VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372 (592)
Q Consensus 293 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 372 (592)
..|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345666677777777777777777766543 3456667777777777777777777777776643 23566666666777
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 452 (592)
...|++++|...++.+.... +.+...+..+...|...|++++|...|++...... .+...+..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777666654 44566666666667777777777777766665432 24555666666666666666666
Q ss_pred HHHHHHHH
Q 007695 453 NLLLELEK 460 (592)
Q Consensus 453 ~l~~~m~~ 460 (592)
..++...+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-08 Score=103.67 Aligned_cols=262 Identities=12% Similarity=-0.015 Sum_probs=145.2
Q ss_pred HhhCHHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHH
Q 007695 233 REQNTQLYFKVAELVLSEESFQTNV----RDYSKLIDAHAKENCLEDAERILKKMNENGI-VPDI----VTSTVLVHMYS 303 (592)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~p~~----~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~----~~~~~Li~~~~ 303 (592)
..++.+.+...+...+.... ..+. ..++.+...+...|++++|...+++...... .++. .++..+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 34566666666666554332 1122 1345555666677777777777776544210 0121 23455666667
Q ss_pred HcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCC----CCHHHHHHHHHHH
Q 007695 304 KAGNLDRAKEAFESLRSH----GFQ--P-DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIE----RSEEIYLALLRSF 372 (592)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~----g~~--p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~Ll~~~ 372 (592)
..|++++|...|++.... +.. | ...++..+...+...|++++|...+++....... ....++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 777777777777666532 211 2 2334555666677777777777777766653211 1234566666667
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPT--LESCT----LLVEAYGQAGDPDQARSNFDYMIRLGHKP---DDRCTASMIAAYG 443 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~----~Li~~~~~~g~~~~A~~lf~~m~~~g~~p---d~~t~~~li~a~~ 443 (592)
...|++++|...+++.....-.++ ..... ..+..+...|++++|...+++.......+ ....+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 777777777777776654311111 11111 22334667777777777776665432211 1224455566667
Q ss_pred hcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 444 KKNLLDKALNLLLELEKD----GFEPGP-ATYTVLVDWLGRLQLINEAEQLLGKISE 495 (592)
Q Consensus 444 ~~g~~~~A~~l~~~m~~~----g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~ 495 (592)
..|++++|...++..... |..++. ..+..+..++...|+.++|...+++...
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777777777777665432 222222 2455556666677777777777776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.5e-09 Score=116.81 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=140.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
+..+|+.|..+|.+.|++++|++.|++..+.... +...|+.|..+|.+.|++++|...|++..+.. +-+..+|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567899999999999999999999998886322 57889999999999999999999999988764 446788999999
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
+|...|++++|++.|++.++... -+...|+.+..+|.+.|++++|...|++..+.. +-+...+..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999888643 267889999999999999999999999988875 5568889999999999999998
Q ss_pred HHHHHHHHHH
Q 007695 416 ARSNFDYMIR 425 (592)
Q Consensus 416 A~~lf~~m~~ 425 (592)
|.+.|++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.1e-08 Score=95.28 Aligned_cols=196 Identities=13% Similarity=0.005 Sum_probs=152.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMI 334 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li 334 (592)
.|+..+......+.+.|++++|...|++..+...+++...+..+..++...|++++|...|++..+.. +.+..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888899999999999999999999887654688888889999999999999999999998764 34567899999
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 007695 335 MAYVNAGQPKLGMSLVDMMITSGIERSE-------EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQP--TLESCTLLVE 405 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~Li~ 405 (592)
.+|...|++++|+..+++..+... .+. .+|..+...+...|++++|...|+...+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 999999999999999999988542 245 558888888999999999999999988764 33 3577778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007695 406 AYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD 461 (592)
Q Consensus 406 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~ 461 (592)
+|...| ..+++++...+. .+...|.... ....+.+++|+..|++..+.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 876554 344555554432 2344444333 33456689999999988774
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.06 E-value=8.1e-07 Score=98.21 Aligned_cols=403 Identities=9% Similarity=0.004 Sum_probs=258.5
Q ss_pred CccHHHHHH------HHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCC---chhHHHHHHhhcC-----CCHhhHH
Q 007695 162 DPKWTEVAE------KIHERGEMILPEEPKPITGKCKLITDKILSLE-KEED---PSPLLAEWKELLQ-----PSRIDWI 226 (592)
Q Consensus 162 ~~~~~~~~~------~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~---~~~A~~~~~~~~~-----p~~~t~~ 226 (592)
...|..... .+..++.+| +......|.+..+...-+.+. +.++ .+.+..+|++++. |++..|.
T Consensus 66 ~~~W~~yi~~~~~~~~~~~aR~vy--EraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 66 IFLYVKLLKHHVSLKQWKQVYETF--DKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH--HHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 334665532 344455554 222223344444555555554 6677 8899999988732 7888888
Q ss_pred HHHHHHHh-hC--------HHHHHHHHHHHhhhCCC-CC-CHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHC
Q 007695 227 NLLDRLRE-QN--------TQLYFKVAELVLSEESF-QT-NVRDYSKLIDAHA---------KENCLEDAERILKKMNEN 286 (592)
Q Consensus 227 ~lL~~~~~-~~--------~~~~~~~~~~~~~~~~~-~p-~~~~y~~Li~~~~---------~~g~~~~A~~l~~~m~~~ 286 (592)
.-+.-... ++ .....++++..+..-|. .+ +...|...+.... ..++++.+..+|++....
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 77765422 22 12233556666655666 55 3456777776543 234578888999988853
Q ss_pred CCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHh--CCCC---------------C-----C---HH
Q 007695 287 GIVPDIVTSTVLVHMYSKAG-------------NLDRAKEAFESLRS--HGFQ---------------P-----D---KK 328 (592)
Q Consensus 287 g~~pd~~~~~~Li~~~~~~g-------------~~~~A~~~~~~m~~--~g~~---------------p-----d---~~ 328 (592)
....-..+|......-...+ +++.|...+.++.. .++. | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 11111234433222211111 22334455544321 1111 1 0 23
Q ss_pred HHHHHHHHHHHcC-------CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCCCHHHH
Q 007695 329 VYNSMIMAYVNAG-------QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG-QITNIMRIEEFQPTLESC 400 (592)
Q Consensus 329 t~~~li~a~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~ 400 (592)
.|...+..--..+ ....+..+|++.+.. .+-+...|...+..+.+.|+.++|. ++|+..... ++.+...|
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 4555554433222 123456778888775 3447888888888888999999996 999999865 36677788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRLG---------HKPD------------DRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~g---------~~pd------------~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
-..+...-+.|+++.|..+|+.+.... ..|+ ...|...+....+.|..+.|..+|....
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 889999999999999999999987631 0132 2357777777788899999999999998
Q ss_pred HC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 007695 460 KD-GFEPGPATYTVLVDWLGRL-QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM-- 535 (592)
Q Consensus 460 ~~-g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~-- 535 (592)
+. + .+....|...+..-.+. ++.+.|..+|+...+. ..-+...+...+......|+.+.|..+|++.......+
T Consensus 462 ~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 462 RLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 76 2 12233443333333343 4589999999999886 33367788889998889999999999999988764322
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 536 ~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
....|...+.--.+.|+.+.+.++.+++.+. .|+.
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 3457888888888999999999999999987 4443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=8.5e-09 Score=115.25 Aligned_cols=166 Identities=10% Similarity=0.040 Sum_probs=146.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
+...|+.|...|.+.|++++|...|++..+.. +-+..+|+.+..+|.+.|++++|+..|++.++... -+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 46789999999999999999999999998764 44688999999999999999999999999988643 26889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK 450 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~ 450 (592)
+|...|++++|.+.|++..+.. +-+..+|+.+..+|.+.|++++|+..|++..+..+. +...|..+..+|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998876 567899999999999999999999999999886443 57788889999999999999
Q ss_pred HHHHHHHHHH
Q 007695 451 ALNLLLELEK 460 (592)
Q Consensus 451 A~~l~~~m~~ 460 (592)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-08 Score=101.97 Aligned_cols=226 Identities=10% Similarity=-0.031 Sum_probs=109.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHHHCC--C---CC-CHHHHHHHH
Q 007695 301 MYSKAGNLDRAKEAFESLRSHGF-QPD----KKVYNSMIMAYVNAGQPKLGMSLVDMMITSG--I---ER-SEEIYLALL 369 (592)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g--~---~p-~~~t~~~Ll 369 (592)
.+...|++++|...|++..+..- .++ ..++..+...|...|+++.|...+.+..+.. . .+ ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34445555555555555442210 011 2344445555555555555555555443310 0 00 123445555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 007695 370 RSFAQCGDVRGAGQITNIMRIE----EFQ-PTLESCTLLVEAYGQAGDPDQARSNFDYMIR-----LGHKPDDRCTASMI 439 (592)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~-----~g~~pd~~t~~~li 439 (592)
.+|...|++++|...+.+.... +-+ ....++..+...|...|++++|...|++... ..+. ...++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHH
Confidence 5555555555555555544432 100 0123455556666666666666666655544 2221 244555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC-CHHHHHHHHHH
Q 007695 440 AAYGKKNLLDKALNLLLELEKD----GFEPGPATYTVLVDWLGRLQL---INEAEQLLGKISELGEAP-PFKIQVSLCDM 511 (592)
Q Consensus 440 ~a~~~~g~~~~A~~l~~~m~~~----g~~p~~~ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p-~~~~~~~Li~~ 511 (592)
.+|.+.|++++|...+++..+. +.+.....+..+...+...++ +.+|...++.. +..| ....+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence 6666666666666666655442 111112334444444445555 45555554442 1111 22345566667
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 007695 512 YARAGIEKKALQALGFLEA 530 (592)
Q Consensus 512 ~~~~g~~~~A~~~~~~m~~ 530 (592)
|...|++++|...|++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777777666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-08 Score=92.40 Aligned_cols=133 Identities=12% Similarity=-0.016 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
|+..+......+...|++++|...|++..+..-+++...+..+..++...|++++|+..+++..+.... +..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 445555555555555666666666655554431144455555555555555555555555555543211 3444555555
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTL-------ESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
+|...|++++|...+++..... +.+. ..|..+...+...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 5555555555555555555443 2223 2244444444444444444444444443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-09 Score=103.88 Aligned_cols=227 Identities=11% Similarity=-0.023 Sum_probs=141.9
Q ss_pred HcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 007695 269 KENCLEDAERILKKMNE-------NGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH------GF-QPDKKVYNSMI 334 (592)
Q Consensus 269 ~~g~~~~A~~l~~~m~~-------~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~------g~-~pd~~t~~~li 334 (592)
..|++++|..+|++..+ ...+....++..+...|...|++++|...|++..+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555555443 122224566777888888888888888888877643 11 22345777888
Q ss_pred HHHHHcCCchHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CC-CCCHHHH
Q 007695 335 MAYVNAGQPKLGMSLVDMMITS------G-IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE------EF-QPTLESC 400 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~------g-~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~ 400 (592)
..|...|++++|...+.+.... . .+....++..+...|...|++++|...+++.... +- +....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888877653 1 1223567778888888889998888888887765 11 2235678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCC
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRL-------GHKPD-DRCTASMIAAYGKKNL------LDKALNLLLELEKDGFEPG 466 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~-------g~~pd-~~t~~~li~a~~~~g~------~~~A~~l~~~m~~~g~~p~ 466 (592)
..+...|...|++++|...|++.... ...+. ...|..+...+...+. +..+...+..... .....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 88888899999999999998887653 11122 2223333333332222 2222222222111 11223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 467 PATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 467 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
..++..+..+|...|++++|..++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467788888999999999999999887653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.1e-09 Score=102.72 Aligned_cols=226 Identities=10% Similarity=-0.003 Sum_probs=157.2
Q ss_pred HcCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHH
Q 007695 339 NAGQPKLGMSLVDMMITS-------GIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIE------EF-QPTLESCTLLV 404 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~~~~~Li 404 (592)
..|++++|+.++++..+. ..+....++..+...|...|++++|...+.+.... +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 467777777777776652 22334677889999999999999999999998765 21 22367889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 007695 405 EAYGQAGDPDQARSNFDYMIRL-----GH-KP-DDRCTASMIAAYGKKNLLDKALNLLLELEKD------GFEP-GPATY 470 (592)
Q Consensus 405 ~~~~~~g~~~~A~~lf~~m~~~-----g~-~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~------g~~p-~~~ty 470 (592)
..|...|++++|...|.+.... +. .| ...++..+...|...|++++|...|++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988764 11 12 3567788888999999999999999998764 1123 34678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCC-CHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCCCC
Q 007695 471 TVLVDWLGRLQLINEAEQLLGKISEL-------GEAP-PFKIQVSLCDMYARAGI------EKKALQALGFLEAKKEQMG 536 (592)
Q Consensus 471 ~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p-~~~~~~~Li~~~~~~g~------~~~A~~~~~~m~~~~~~~~ 536 (592)
..+..++...|++++|...++++.+. ...+ ....+..+...+...+. +..+...++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88999999999999999999988753 1111 22334444433433332 22222222222111 1112
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 537 PDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 537 ~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
..++..+...|...|++++|.++|++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44678889999999999999999998865
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.94 E-value=7.1e-06 Score=90.67 Aligned_cols=389 Identities=11% Similarity=0.030 Sum_probs=239.0
Q ss_pred chHHHHHHHHccc-ccCCchhHHHHHHhhc---CCCHhhHHHHHHHH-HhhC---HHHHHHHHHHHhhhCCCCCCHHHHH
Q 007695 190 KCKLITDKILSLE-KEEDPSPLLAEWKELL---QPSRIDWINLLDRL-REQN---TQLYFKVAELVLSEESFQTNVRDYS 261 (592)
Q Consensus 190 ~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~---~p~~~t~~~lL~~~-~~~~---~~~~~~~~~~~~~~~~~~p~~~~y~ 261 (592)
........++.+. +.+.++.|..+|++++ ......|..-+..- ..++ .+.+..+++..+......|++..|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3333455566555 6677888888887773 23344455555543 3345 6667777777665432347777777
Q ss_pred HHHHHHHHcCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhC
Q 007695 262 KLIDAHAKENCL--------EDAERILKKMNE-NGI-VPD-IVTSTVLVHMYS---------KAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 262 ~Li~~~~~~g~~--------~~A~~l~~~m~~-~g~-~pd-~~~~~~Li~~~~---------~~g~~~~A~~~~~~m~~~ 321 (592)
.-+....+.+++ +...++|+.... .|. .|+ ...|...+.... ..++++.+..+|+..+..
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 777666665543 334467776543 455 443 456666665433 234567778888887753
Q ss_pred CCCCCHHHHHHHHHHHHHcCC-------------chHHHHHHHHHHH--CCCC---------------C-----C---HH
Q 007695 322 GFQPDKKVYNSMIMAYVNAGQ-------------PKLGMSLVDMMIT--SGIE---------------R-----S---EE 363 (592)
Q Consensus 322 g~~pd~~t~~~li~a~~~~g~-------------~~~A~~l~~~m~~--~g~~---------------p-----~---~~ 363 (592)
....-..+|......-...+. ++.|...+.++.. .++. | + ..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~ 303 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLL 303 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHH
Confidence 211122344333222211111 1223333433321 1110 1 0 13
Q ss_pred HHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHH
Q 007695 364 IYLALLRSFAQCG-------DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR-SNFDYMIRLGHKPDDRCT 435 (592)
Q Consensus 364 t~~~Ll~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~-~lf~~m~~~g~~pd~~t~ 435 (592)
.|...+..--..+ ..+.+..+|++....- +-+...|...+..+.+.|+.++|. .+|+..... ++.+...|
T Consensus 304 lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lw 381 (679)
T 4e6h_A 304 IWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLA 381 (679)
T ss_dssp HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHH
Confidence 3444444333222 1233456677776653 557888888888888999999996 999998874 33355566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 436 ASMIAAYGKKNLLDKALNLLLELEKDG---------FEPG------------PATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 436 ~~li~a~~~~g~~~~A~~l~~~m~~~g---------~~p~------------~~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
...+...-+.|+++.|..+|+.+.... -.|+ ...|...+....+.|.++.|..+|....
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777888888999999999999987631 0132 2467778888888999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-
Q 007695 495 ELGEAPPFKIQVSLCDMYARAG-IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE- 572 (592)
Q Consensus 495 ~~g~~p~~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~- 572 (592)
+....+...+|...+..-.+.+ +.+.|.++|+...+. .+-++..|..++......|+.+.|..+|++.......++.
T Consensus 462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 7611223445554444444444 589999999998886 4556777888888888899999999999999876443323
Q ss_pred -HHHHHHHhh
Q 007695 573 -RLKVALISS 581 (592)
Q Consensus 573 -~~~~~l~~~ 581 (592)
.++...+..
T Consensus 541 ~~lw~~~~~f 550 (679)
T 4e6h_A 541 KMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-07 Score=81.09 Aligned_cols=125 Identities=20% Similarity=0.216 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 376 (592)
.+...+...|++++|..+|+++.+.. +.+..++..+...+...|++++|..+++++...+ +.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 33344444444444444444443321 2233334444444444444444444444443322 113333444444444444
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 377 DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
++++|...++.+.... +.+..++..+...|.+.|++++|...|+++.
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444332 2233444444444444444444444444443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-07 Score=78.62 Aligned_cols=128 Identities=14% Similarity=0.037 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 007695 435 TASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYAR 514 (592)
Q Consensus 435 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~ 514 (592)
|..+...|...|++++|..++.++.+.. +.+...+..+...+...|++++|...++++...... +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 3344444555555555555555544432 223444555555555555555555555555544322 45555666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 515 AGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 515 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
.|++++|...++++.... +.+...+..+...+...|++++|.+.++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665542 23455566666666677777777776666654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-07 Score=92.51 Aligned_cols=55 Identities=15% Similarity=0.253 Sum_probs=29.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 007695 301 MYSKAGNLDRAKEAFESLRSH----GFQPD-KKVYNSMIMAYVNAGQPKLGMSLVDMMIT 355 (592)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 355 (592)
.|...|++++|...|.+.... |-+++ ..+|+.+..+|.+.|++++|+..|++.+.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 105 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566666666666655421 21111 34555566666666666666665555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=4.1e-07 Score=90.22 Aligned_cols=173 Identities=12% Similarity=-0.032 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhCCCHHHH
Q 007695 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITS----GIERS-EEIYLALLRSFAQCGDVRGA 381 (592)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~Ll~~~~~~g~~~~A 381 (592)
++++|...|++. ...|...|++++|...|.+.... |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 33566778888888887776542 21111 35667777777777777777
Q ss_pred HHHHHHHHHcCC---CC--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 007695 382 GQITNIMRIEEF---QP--TLESCTLLVEAYGQA-GDPDQARSNFDYMIRLGHK-PD----DRCTASMIAAYGKKNLLDK 450 (592)
Q Consensus 382 ~~~~~~m~~~g~---~~--~~~~~~~Li~~~~~~-g~~~~A~~lf~~m~~~g~~-pd----~~t~~~li~a~~~~g~~~~ 450 (592)
...+++...... .+ -..+++.+...|... |++++|+..|++....... .+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777766654210 00 023455555555554 6666666655555442110 00 2234444555555555555
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 451 ALNLLLELEKDGFEPGP------ATYTVLVDWLGRLQLINEAEQLLGKIS 494 (592)
Q Consensus 451 A~~l~~~m~~~g~~p~~------~ty~~li~~~~~~g~~~~A~~l~~~m~ 494 (592)
|+..|++..+....... ..|..+..++...|++++|...+++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555443211110 133344444444455555555554443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-06 Score=84.97 Aligned_cols=244 Identities=13% Similarity=0.026 Sum_probs=138.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~ 343 (592)
|+-..=.|++..++.-...+ ........-..+.++|...|++... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc--
Confidence 33444467777777632222 1122233333455777777776532 11134443433333333 211
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF-QPTLESCTLLVEAYGQAGDPDQARSNFDY 422 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~Li~~~~~~g~~~~A~~lf~~ 422 (592)
|+..|++....+ .++..++..+..++...|++++|++++.+....+- .-+...+..++..|.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566666666544 44555666777777777777777777777655441 13566677777777777777777777777
Q ss_pred HHHcCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 423 MIRLGHKP-----DDRCTASMIAAY--GKKN--LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493 (592)
Q Consensus 423 m~~~g~~p-----d~~t~~~li~a~--~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 493 (592)
|.+. .| +..+...+..++ ...| ++.+|+.+|+++.+. .|+..+-..++.++.+.|++++|...++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7663 34 244455555552 2223 677777777777553 344233333333677777777777777765
Q ss_pred HhcC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 494 SELG---------EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 494 ~~~g---------~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
.+.- -.-++.++..+|..+...|+ .|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 4420 01255566555555555665 667777777664
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.1e-07 Score=89.23 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=95.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHH
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD---IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF--QPDKKV 329 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t 329 (592)
.+...+-.+...+.+.|++++|...|+.+.+.... + ...+..+..+|.+.|++++|...|++..+..- +....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 34555556666666777777777777776664211 2 45566666667777777777777776665310 111345
Q ss_pred HHHHHHHHHH--------cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 330 YNSMIMAYVN--------AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCT 401 (592)
Q Consensus 330 ~~~li~a~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 401 (592)
+..+..++.. .|++++|+..|++.+..... +......+. .+..+... ....+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 5556666666 66666666666666654211 111111110 00000000 011134
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHH
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKP--DDRCTASMIAAYGKK----------NLLDKALNLLLELEK 460 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~p--d~~t~~~li~a~~~~----------g~~~~A~~l~~~m~~ 460 (592)
.+...|.+.|++++|...|+++....+.. ....+..+..+|... |++++|...|+.+.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 45556666666666666666665532211 123444455555544 555666666665554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.4e-07 Score=85.91 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=36.8
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
+..+|.+.|++++|+..|++.++... -+...+..+..+|...|++++|...|++..+.. +.+..++..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 44445555555555555555544321 144445555555555555555555555555443 33444455554444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-06 Score=85.79 Aligned_cols=180 Identities=14% Similarity=0.051 Sum_probs=111.8
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-ERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 311 A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
|...|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666677666554 45555666677777777777777777777765543 1256666777777777777777777777776
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 390 IEEFQP-----TLESCTLLVEA--YGQAG--DPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 390 ~~g~~~-----~~~~~~~Li~~--~~~~g--~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
+. .| +..+...|..+ ....| ++.+|..+|+++... .|+..+...++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65 34 24444555544 22233 677777777777553 24433334444467777777777777776543
Q ss_pred C-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 461 D-----G----FEPGPATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 461 ~-----g----~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
. . -+-|+.++..+|......|+ +|.+++.++....
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 2 0 02245555566666666665 6777777777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.73 E-value=7e-06 Score=81.70 Aligned_cols=165 Identities=13% Similarity=0.072 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 007695 376 GDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD--QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL------ 447 (592)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~--~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~------ 447 (592)
+++++++.+++.+.... +.|-.+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 44555555555555444 445555555555555555554 555555555554332 44555544444444443
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 448 LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLIN-EAEQLLGKISELG--EAPPFKIQVSLCDMYARAGIEKKALQA 524 (592)
Q Consensus 448 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~-~A~~l~~~m~~~g--~~p~~~~~~~Li~~~~~~g~~~~A~~~ 524 (592)
++++++.++.+.... +-|...++.+-..+.+.|+.. .+..+..++.+.+ -..+...+..+.+.|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 555555555554432 234444544444455554422 2333444443322 122556666666666666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHH
Q 007695 525 LGFLEAKKEQMGPDDFERI 543 (592)
Q Consensus 525 ~~~m~~~~~~~~~~~~~~l 543 (592)
++.+.++-.+.....|+..
T Consensus 281 ~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHH
Confidence 7666653233344445443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.5e-07 Score=85.04 Aligned_cols=169 Identities=12% Similarity=0.045 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhCC
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTV----------------LVHMYSKAGNLDRAKEAFESLRSHG 322 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~----------------Li~~~~~~g~~~~A~~~~~~m~~~g 322 (592)
.+-.....+.+.|++++|...|++..+.... +...|.. +..+|.+.|++++|...|++..+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3444556678899999999999998875221 3455666 8899999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCH--H
Q 007695 323 FQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD--VRGAGQITNIMRIEEFQPTL--E 398 (592)
Q Consensus 323 ~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~--~~~A~~~~~~m~~~g~~~~~--~ 398 (592)
+.+..+|..+..+|...|++++|...|++.++... -+..++..+..+|...|+ ...+...+.... .|+. .
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 158 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQY 158 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhH
Confidence 55788999999999999999999999999998653 368888888888876654 334455555543 3333 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTA 436 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~ 436 (592)
.+..+..++...|++++|...|++..+. .|+.....
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 4445566677788889999998888763 46654433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.3e-07 Score=87.51 Aligned_cols=183 Identities=10% Similarity=-0.018 Sum_probs=127.2
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHH
Q 007695 225 WINLLDRLREQNTQLYFKVAELVLSEESFQTN-VRDYSKLIDAHAKENCLEDAERILKKMNENGI-VP-DIVTSTVLVHM 301 (592)
Q Consensus 225 ~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~p-d~~~~~~Li~~ 301 (592)
|..-...+..++.+.+...+...+...+-.+. ...+..+..+|.+.|++++|...|++..+... .| ....+..+..+
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 33334445788999999999999876432222 66788899999999999999999999988632 12 24567788888
Q ss_pred HHH--------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007695 302 YSK--------AGNLDRAKEAFESLRSHGFQPD-KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSF 372 (592)
Q Consensus 302 ~~~--------~g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 372 (592)
+.. .|++++|...|+++.+. .|+ ......+.. +..+... ....+..+...|
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~la~~~ 158 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQYEAARLY 158 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHHHHHHHHH
Confidence 888 99999999999999875 343 223222211 1111100 012356677778
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcC
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQP--TLESCTLLVEAYGQA----------GDPDQARSNFDYMIRLG 427 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~Li~~~~~~----------g~~~~A~~lf~~m~~~g 427 (592)
.+.|++++|...|+.+....... ....+..+..+|... |++++|...|+++....
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 88888888888888887663111 245677777777765 78888888888888753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-06 Score=81.38 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----CchHHHHHH
Q 007695 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG----QPKLGMSLV 350 (592)
Q Consensus 275 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g----~~~~A~~l~ 350 (592)
+|.+.|++..+.| +...+..|...|...+++++|...|++..+.| +...+..|...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555566655543 55666666666666666666666666666644 55566666666655 4 566666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 007695 351 DMMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQ-PTLESCTLLVEAYGQ----AGDPDQARSNFD 421 (592)
Q Consensus 351 ~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~-~~~~~~~~Li~~~~~----~g~~~~A~~lf~ 421 (592)
++..+.| +...+..|...|.. .+++++|...|+.....+.. .+..++..|..+|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6666554 45556666666655 56666666666666655410 015566666666666 556666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 007695 422 YMIRLGHKPDDRCTASMIAAYGKK-N-----LLDKALNLLLELEKDG 462 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~~li~a~~~~-g-----~~~~A~~l~~~m~~~g 462 (592)
+....+ .+...+..+-..|... | +.++|..+|+...+.|
T Consensus 154 ~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 665541 1233444444444432 2 5666666666655544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.68 E-value=7.8e-05 Score=79.56 Aligned_cols=358 Identities=12% Similarity=0.034 Sum_probs=224.8
Q ss_pred chHHHHHHHHcccccCCchhHHHHHHhhc--CCCHhhHHHHHHHHHhhC--HHHHHHHHHHHhhhCCCC-CCHHHHHHHH
Q 007695 190 KCKLITDKILSLEKEEDPSPLLAEWKELL--QPSRIDWINLLDRLREQN--TQLYFKVAELVLSEESFQ-TNVRDYSKLI 264 (592)
Q Consensus 190 ~~~~~~~~l~~~~~~g~~~~A~~~~~~~~--~p~~~t~~~lL~~~~~~~--~~~~~~~~~~~~~~~~~~-p~~~~y~~Li 264 (592)
..+.++...+..+-.|+++.|..+|++.+ -|+...|..-+.-....+ .+.....++..+..-|.. .+...|...+
T Consensus 13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34455566666653488999999999985 489999998888764433 233444555555555543 3667777777
Q ss_pred HHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHhCCCCCCH
Q 007695 265 DAHA----KENCLEDAERILKKMNENGIVPDIVTSTVLVHMYS-------------KAGNLDRAKEAFESLRSHGFQPDK 327 (592)
Q Consensus 265 ~~~~----~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~-------------~~g~~~~A~~~~~~m~~~g~~pd~ 327 (592)
..+. ..++++.+.++|++.......--...|......-. ..+.+..|..+++.+...--..+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 35678999999999988421111122222211110 112334455555554421001244
Q ss_pred HHHHHHHHHHHHcC--C-----chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 328 KVYNSMIMAYVNAG--Q-----PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESC 400 (592)
Q Consensus 328 ~t~~~li~a~~~~g--~-----~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 400 (592)
..|...+..-...+ - ...+..+|++++.. .+.+...|...+..+.+.|+.+.|..++++.... +.+...|
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 56666555533221 1 23567889998875 3456888999999999999999999999999988 4444433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRLG---------HKP---DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPA 468 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~g---------~~p---d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ 468 (592)
.. |....+.++ +++.+.+.- ..+ ....|...+..+.+.+..+.|..+|... +.. ..+..
T Consensus 250 ~~----y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 250 LY----YGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp HH----HHHHTTCTH---HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred HH----HHhhcchhH---HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 32 222222122 133332210 001 1244556666666778899999999998 321 23444
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 469 TYTVLVDWLGR-LQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547 (592)
Q Consensus 469 ty~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~ 547 (592)
.|......-.. .++.+.|..+|+...+.-.. +...+...++...+.|+.+.|..+|+.+. .....|...+.--
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE 394 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 55433322222 33699999999998876433 45667778888889999999999999973 2467788888877
Q ss_pred HhCCCHHHHHHHHHHHHH
Q 007695 548 LAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 548 ~~~g~~~~A~~l~~~m~~ 565 (592)
...|+.+.+.++++++..
T Consensus 395 ~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 395 FMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 888999999998888774
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-07 Score=104.49 Aligned_cols=173 Identities=10% Similarity=-0.004 Sum_probs=137.0
Q ss_pred HHcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 268 AKENCLEDAERILKKMN--------ENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~--------~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
...|++++|++.|++.. +.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67889999999999987 432 3366778888899999999999999999988754 4577889999999999
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l 419 (592)
.|++++|+..|++..+... -+...+..+..+|.+.|++++ ...|++..+.+ +.+...|..+..+|.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999888643 267788888889999999999 99999888776 56788888999999999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 007695 420 FDYMIRLGHKPD-DRCTASMIAAYGKKNL 447 (592)
Q Consensus 420 f~~m~~~g~~pd-~~t~~~li~a~~~~g~ 447 (592)
|++..+. .|+ ...+..+..++...++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9887764 344 4566666666655444
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.3e-07 Score=103.58 Aligned_cols=174 Identities=13% Similarity=-0.022 Sum_probs=113.5
Q ss_pred HhCCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 007695 373 AQCGDVRGAGQITNIMR--------IEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGK 444 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~ 444 (592)
...|++++|.+.+++.. ... +.+...+..+...|.+.|++++|...|++..+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56677777777777766 332 445566777777777777777777777777764332 55666667777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007695 445 KNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQA 524 (592)
Q Consensus 445 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~ 524 (592)
.|++++|+..|++..+.. +-+...+..+..++.+.|++++ ...|++..+.... +...|..+..+|.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777766632 2235666677777777777777 7777777766544 666777777777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 007695 525 LGFLEAKKEQMGPDDFERIINGLLAGGF 552 (592)
Q Consensus 525 ~~~m~~~~~~~~~~~~~~li~a~~~~g~ 552 (592)
|++..+.+ +-+...|..+..++...|+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 77765542 1234456666666655444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-05 Score=79.89 Aligned_cols=228 Identities=8% Similarity=-0.004 Sum_probs=176.6
Q ss_pred HcCC-chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc-
Q 007695 339 NAGQ-PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG--DVRGAGQITNIMRIEEFQPTLESCTLLVEAY----GQA- 410 (592)
Q Consensus 339 ~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~----~~~- 410 (592)
+.|. .++|+.+++.++..+.. +...|+.--..+...+ ++++++..++.+.... +-+..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 3444 45788888888876433 5666777777777777 8999999999998876 55667777665555 555
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----
Q 007695 411 --GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD--KALNLLLELEKDGFEPGPATYTVLVDWLGRLQL---- 482 (592)
Q Consensus 411 --g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~--~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~---- 482 (592)
+++++++.+++.+....++ +..+|+.-..++.+.|.++ +++.+++.+.+.. .-|...|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 7899999999999987654 8889988888888889888 9999999998864 3466677666666666666
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCCHHHHH
Q 007695 483 --INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK-ALQALGFLEAKK--EQMGPDDFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 483 --~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~-A~~~~~~m~~~~--~~~~~~~~~~li~a~~~~g~~~~A~ 557 (592)
++++.+.+++++...+. |...|+.+...+.+.|+... +..+...+...+ ...++..+..+...|.+.|+.++|+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999999988777 99999999999999888544 455666555432 2447788899999999999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 007695 558 RVHGLMEAQGFAASE 572 (592)
Q Consensus 558 ~l~~~m~~~g~~pd~ 572 (592)
++++.+.+. +.|-.
T Consensus 279 ~~~~~l~~~-~Dpir 292 (306)
T 3dra_A 279 TVYDLLKSK-YNPIR 292 (306)
T ss_dssp HHHHHHHHT-TCGGG
T ss_pred HHHHHHHhc-cChHH
Confidence 999998753 44444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.9e-06 Score=79.56 Aligned_cols=187 Identities=16% Similarity=0.074 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 007695 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQ-P-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD--RCTA 436 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~t~~ 436 (592)
+...+..+...+.+.|++++|...|+.+...... + ....+..+..+|.+.|++++|...|++.....+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556677778888899999999999998876311 1 1467788889999999999999999998875443221 2344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 007695 437 SMIAAYGK------------------KNLLDKALNLLLELEKDGFEPGP-ATYTVLVDWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 437 ~li~a~~~------------------~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
.+..++.. .|++++|...|+++.+. .|+. ......... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH----
Confidence 44444443 45666777777666653 2321 111111000 0000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 007695 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM--GPDDFERIINGLLAGGFLQDAQRVHGLMEAQG 567 (592)
Q Consensus 498 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g 567 (592)
......+...|.+.|++++|...|+.+.+..... .+..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112356678889999999999999998763221 12568888999999999999999999988763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-06 Score=80.78 Aligned_cols=140 Identities=12% Similarity=0.061 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHH
Q 007695 311 AKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG----DVRGAGQITN 386 (592)
Q Consensus 311 A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g----~~~~A~~~~~ 386 (592)
|.+.|++..+.| +..++..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555443 55555555555555566666666666555544 44455555555544 3 5555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 007695 387 IMRIEEFQPTLESCTLLVEAYGQ----AGDPDQARSNFDYMIRLGHK-PDDRCTASMIAAYGK----KNLLDKALNLLLE 457 (592)
Q Consensus 387 ~m~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~lf~~m~~~g~~-pd~~t~~~li~a~~~----~g~~~~A~~l~~~ 457 (592)
...+.| +..++..|...|.. .+++++|...|++....|.. .+...+..+-..|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554433 34444455544444 44555555555554443221 013334444444444 3444444444444
Q ss_pred HHH
Q 007695 458 LEK 460 (592)
Q Consensus 458 m~~ 460 (592)
..+
T Consensus 155 A~~ 157 (212)
T 3rjv_A 155 SSS 157 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-06 Score=95.77 Aligned_cols=153 Identities=10% Similarity=-0.037 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHH
Q 007695 271 NCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLV 350 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~ 350 (592)
|++++|.+.|++..+... -+...|..+...|...|++++|.+.|++..+.. +.+..+|..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 566667777766655421 245666667777777777777777777766553 335666667777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcC
Q 007695 351 DMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA---GDPDQARSNFDYMIRLG 427 (592)
Q Consensus 351 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~---g~~~~A~~lf~~m~~~g 427 (592)
++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|...|++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7766643 2256666677777777777777777777766654 44566666677777777 77777777777666643
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-07 Score=83.00 Aligned_cols=59 Identities=7% Similarity=0.053 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS 320 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 320 (592)
..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...|+....
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 344445555555555555555544321 11444555555555555555555555555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.2e-06 Score=80.14 Aligned_cols=185 Identities=14% Similarity=0.075 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIV-PD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK----KVY 330 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~ 330 (592)
...+..+...+.+.|++++|...|+++.+.... |. ...+..+..+|.+.|++++|...|+++.+. .|+. .++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 445556677788889999999999998875322 11 356777888889999999999999988765 2331 244
Q ss_pred HHHHHHHHH------------------cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 007695 331 NSMIMAYVN------------------AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392 (592)
Q Consensus 331 ~~li~a~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g 392 (592)
..+..++.. .|++++|...|+++++.... +..+....... ..+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH----
Confidence 444455543 35566666666666654211 11111111100 0000000
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007695 393 FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD--DRCTASMIAAYGKKNLLDKALNLLLELEKDG 462 (592)
Q Consensus 393 ~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g 462 (592)
......+...|.+.|++++|...|+++.+..+... ...+..+..+|.+.|+.++|...++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01123567788899999999999999887533211 2467778889999999999999999887754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=9.6e-07 Score=87.40 Aligned_cols=163 Identities=9% Similarity=0.032 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-H
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM-I 334 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-i 334 (592)
+...+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|...|++.... .|+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 3344555555556666666666666665554221 4555555666666666666666666655543 2333322222 2
Q ss_pred HHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCC
Q 007695 335 MAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPT--LESCTLLVEAYGQAGD 412 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~Li~~~~~~g~ 412 (592)
..+...++.+.|...+++..... +.+...+..+...|...|++++|...|.++.... +.+ ...+..++..|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 22444555555555555555543 2245555555555555666666665555555543 111 4455555555555555
Q ss_pred HHHHHHHHHHH
Q 007695 413 PDQARSNFDYM 423 (592)
Q Consensus 413 ~~~A~~lf~~m 423 (592)
.++|...|++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 55555555443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-06 Score=94.36 Aligned_cols=154 Identities=14% Similarity=0.035 Sum_probs=119.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 007695 305 AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQI 384 (592)
Q Consensus 305 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~ 384 (592)
.|++++|...|++..+.. +.+...|..+...|...|++++|.+.|++..+.. +-+..++..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988663 4468899999999999999999999999999864 33688999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 007695 385 TNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK---NLLDKALNLLLELEKD 461 (592)
Q Consensus 385 ~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~---g~~~~A~~l~~~m~~~ 461 (592)
+++..+.. +.+...+..+..+|.+.|++++|...|++..+.... +...+..+..+|... |+.++|...+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999876 567889999999999999999999999999886443 577888899999999 9999999999998775
Q ss_pred C
Q 007695 462 G 462 (592)
Q Consensus 462 g 462 (592)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.8e-06 Score=85.35 Aligned_cols=167 Identities=7% Similarity=-0.059 Sum_probs=134.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHH-
Q 007695 289 VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLA- 367 (592)
Q Consensus 289 ~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~- 367 (592)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++..... |+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3456677788888999999999999999988764 4577889999999999999999999999887653 45443333
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP-DDRCTASMIAAYGKKN 446 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~t~~~li~a~~~~g 446 (592)
....+...++.+.|...+++..... +.+...+..+...|...|++++|...|.++....+.. +...+..+...|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2333667777888899999888876 6678999999999999999999999999998864432 2678888999999999
Q ss_pred CHHHHHHHHHHHH
Q 007695 447 LLDKALNLLLELE 459 (592)
Q Consensus 447 ~~~~A~~l~~~m~ 459 (592)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999998887754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-07 Score=82.94 Aligned_cols=81 Identities=11% Similarity=0.100 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG 376 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 376 (592)
.+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|+..|++.++... -+..++..+...|.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 34444444444444444444444332 22344444444444444444444444444443321 13334444444444444
Q ss_pred CHH
Q 007695 377 DVR 379 (592)
Q Consensus 377 ~~~ 379 (592)
+++
T Consensus 114 ~~~ 116 (150)
T 4ga2_A 114 VTD 116 (150)
T ss_dssp SSS
T ss_pred ChH
Confidence 443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.9e-07 Score=81.22 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=84.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHc
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDW-LGRL 480 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~~~~ 480 (592)
.+...+.+.|++++|...|++.....+. +...+..+..+|...|++++|+..|+..... .|+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3344455555555555555544432221 3344445555555555555555555544332 1222222111111 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHH
Q 007695 481 QLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM-GPDDFERIINGLLAGGFLQDAQRV 559 (592)
Q Consensus 481 g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~a~~~~g~~~~A~~l 559 (592)
+....+...+++..+.... +...+..+...+...|++++|...|+++......+ ++..+..+...|...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 1222355666666655433 56677777777777777777777777776654322 244666777777777777777777
Q ss_pred HHHHH
Q 007695 560 HGLME 564 (592)
Q Consensus 560 ~~~m~ 564 (592)
|++..
T Consensus 167 y~~al 171 (176)
T 2r5s_A 167 YRRQL 171 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-06 Score=84.58 Aligned_cols=160 Identities=9% Similarity=-0.047 Sum_probs=78.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC---CCC--CHHHHHHH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSH----GFQP-DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG---IER--SEEIYLAL 368 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g---~~p--~~~t~~~L 368 (592)
...|...|++++|...|.+.... +-.+ -..+|+.+...|...|++++|+..|++..+.- -.+ -..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44566667777777666665432 1000 12356666666666666666666666554321 011 12344555
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHH
Q 007695 369 LRSFAQCGDVRGAGQITNIMRIEEFQP-----TLESCTLLVEAYGQAGDPDQARSNFDYMIRL----GHKPD-DRCTASM 438 (592)
Q Consensus 369 l~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~----g~~pd-~~t~~~l 438 (592)
...|.. |++++|...|++.....-.. ...+++.+...|.+.|++++|...|++.... +..+. ..++..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 555555 66666666555554321000 0234555555555555555555555555442 10000 1133334
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 007695 439 IAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 439 i~a~~~~g~~~~A~~l~~~m~ 459 (592)
..++...|++++|...|++..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 444444555555555555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.3e-07 Score=81.21 Aligned_cols=143 Identities=8% Similarity=-0.059 Sum_probs=88.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 007695 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379 (592)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 379 (592)
.++...|++++|+..|....... +-+...+..+...|.+.|++++|++.|++.++... -+..+|..+..+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchH
Confidence 34445566777777777665431 11233455667777777777777777777776542 25677777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 007695 380 GAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSN-FDYMIRLGHKPDDRCTASMIAAYGKKN 446 (592)
Q Consensus 380 ~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~l-f~~m~~~g~~pd~~t~~~li~a~~~~g 446 (592)
+|...|+...+.. +-+..+|..+...|.+.|++++|... +++..+..+. +...|......+...|
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 7777777777664 44567777777777777776655443 4665553332 4455554444444444
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.49 E-value=7.7e-06 Score=81.58 Aligned_cols=199 Identities=10% Similarity=-0.041 Sum_probs=122.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHH
Q 007695 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSL 349 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l 349 (592)
.|++++|.+++++..+.. +.. + +...++++.|...|.+. ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567788888888776531 111 0 11146777777777665 4467778888888888
Q ss_pred HHHHHHCCC---CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 007695 350 VDMMITSGI---ER--SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF---QPT--LESCTLLVEAYGQAGDPDQARSN 419 (592)
Q Consensus 350 ~~~m~~~g~---~p--~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~Li~~~~~~g~~~~A~~l 419 (592)
|.+..+... .+ -..+|+.+...|.+.|++++|...|++...... .+. ..+++.+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 877755311 00 134677777778888888888887777654310 111 3456667777776 778887777
Q ss_pred HHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 007695 420 FDYMIRLGHKP-D----DRCTASMIAAYGKKNLLDKALNLLLELEKD----GFEPG-PATYTVLVDWLGRLQLINEAEQL 489 (592)
Q Consensus 420 f~~m~~~g~~p-d----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~~~~A~~l 489 (592)
|++........ + ..++..+...|.+.|++++|+..|++..+. +..+. ..++..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77665521100 1 345666677777777777777777776542 11111 12455555566666777777777
Q ss_pred HHHHH
Q 007695 490 LGKIS 494 (592)
Q Consensus 490 ~~~m~ 494 (592)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77766
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2e-05 Score=77.80 Aligned_cols=163 Identities=8% Similarity=-0.068 Sum_probs=115.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHH
Q 007695 403 LVEAYGQAGDPDQARSNFDYMIRLGH-KPDDR----CTASMIAAYGKKNLLDKALNLLLELEKDGF-EPG----PATYTV 472 (592)
Q Consensus 403 Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~----t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~ 472 (592)
.+..+...|++++|..++++...... .|+.. .+..+...|...|++++|+..|.+...... .++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888888888888888876422 22211 233456666777888999888888876321 122 336888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh----c-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 007695 473 LVDWLGRLQLINEAEQLLGKISE----L-GEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAK----KEQMG-PDDFE 541 (592)
Q Consensus 473 li~~~~~~g~~~~A~~l~~~m~~----~-g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----~~~~~-~~~~~ 541 (592)
+..+|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888899999999988888763 1 1111 2347788889999999999999998876542 22222 56788
Q ss_pred HHHHHHHhCC-CHHHHHHHHHHHHH
Q 007695 542 RIINGLLAGG-FLQDAQRVHGLMEA 565 (592)
Q Consensus 542 ~li~a~~~~g-~~~~A~~l~~~m~~ 565 (592)
.+..+|...| .+++|.+.|++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999 46999998887753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=7.1e-06 Score=76.38 Aligned_cols=126 Identities=10% Similarity=0.014 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 374 (592)
+..+...+...|++++|...|++.. .|+..+|..+..+|...|++++|+..|++..... +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344455555666666666665543 4455566666666666666666666666655543 2245556666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCCC----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 375 CGDVRGAGQITNIMRIEEFQP----------------TLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~----------------~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
.|++++|...|+...... +. ....+..+..+|.+.|++++|...|+.....
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 666666666666655532 11 1256677777777777777777777777664
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-05 Score=73.70 Aligned_cols=128 Identities=14% Similarity=-0.012 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLG 478 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 478 (592)
.+..+...+...|++++|...|++.. .|+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34555666667777777777776652 3566666667777777777777777777665542 234556666666677
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 479 RLQLINEAEQLLGKISELGEAP---------------PFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 479 ~~g~~~~A~~l~~~m~~~g~~p---------------~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..|++++|...+++..+..... ....+..+..+|...|++++|...|+.....
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777666543221 1155666666666666666666666666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=8.6e-05 Score=74.79 Aligned_cols=263 Identities=10% Similarity=-0.022 Sum_probs=156.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
+.+-....+.+..++|+++++.+...+.. +..+|+.--..+...| .+++++.+++.+.... +-+..+|+.-...+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 33333334445557899999998886443 6667887777777777 5899999999988765 5577888888777777
Q ss_pred c-C-CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 340 A-G-QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR--------GAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 340 ~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
. + ++++++++++.+.+...+ |..+|+--.-.+.+.+.++ ++++.++.+.+.. +.|..+|+.....+.+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred hcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 6 6 788888888888876533 6777766555555554444 6777777777665 5566777777666666
Q ss_pred cCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 007695 410 AGD-------PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDK--ALNLLLELEKDGFEPGPATYTVLVDWLGRL 480 (592)
Q Consensus 410 ~g~-------~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~--A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 480 (592)
.+. ++++++.+++.....+. |...|+-+-..+.+.|.... -..+. ...+...+ ..
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~---~~~~~~~~-~~----------- 277 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAIL---PYTASKLN-PD----------- 277 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHG---GGTC------------------
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCccccccccc---cccccccc-cc-----------
Confidence 664 56666666666654333 55555544444444333200 00000 00000000 00
Q ss_pred CCHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 481 QLINEAEQLLGKISELG-----EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIIN 545 (592)
Q Consensus 481 g~~~~A~~l~~~m~~~g-----~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 545 (592)
......+...+...+ ..++...+..|++.|...|+.++|.++++.+.++-.+....-|+..++
T Consensus 278 --~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 278 --IETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp ----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred --chhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 011111111111111 134677778888888888888888888888876544444555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-05 Score=70.53 Aligned_cols=125 Identities=11% Similarity=0.021 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ 374 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 374 (592)
+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+.+..... +.+..++..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444444555555555555444332 2234444444444444555555555544444432 1234444444444445
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHH
Q 007695 375 CGDVRGAGQITNIMRIEEFQPTLESCTL--LVEAYGQAGDPDQARSNFDY 422 (592)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~--Li~~~~~~g~~~~A~~lf~~ 422 (592)
.|++++|...+++..... +.+...+.. ++..+.+.|++++|...+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 555555555554444432 222333322 22224444445555444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.38 E-value=7.4e-05 Score=73.68 Aligned_cols=163 Identities=10% Similarity=-0.048 Sum_probs=110.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHH
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIEEF-QPT----LESCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCTAS 437 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~~~ 437 (592)
.+..+...|++++|..+++....... .++ ...+..+...+...|++++|...|++...... .++ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667777888888888777765421 112 11333466666677788888888888777322 122 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCC-HHHHH
Q 007695 438 MIAAYGKKNLLDKALNLLLELEKD-----GFEPG-PATYTVLVDWLGRLQLINEAEQLLGKISEL----GEAPP-FKIQV 506 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~ 506 (592)
+..+|...|++++|+..|++..+. +..+. ..+|..+..+|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888887631 11222 246778888888899999998888876642 22222 57888
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHH
Q 007695 507 SLCDMYARAG-IEKKALQALGFLEA 530 (592)
Q Consensus 507 ~Li~~~~~~g-~~~~A~~~~~~m~~ 530 (592)
.+..+|.+.| .+++|...+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8899999999 46889888876643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-05 Score=66.02 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=7.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 007695 263 LIDAHAKENCLEDAERILKKM 283 (592)
Q Consensus 263 Li~~~~~~g~~~~A~~l~~~m 283 (592)
+...+...|++++|.+.|+++
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~ 35 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKA 35 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.3e-05 Score=73.73 Aligned_cols=167 Identities=7% Similarity=-0.091 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--H
Q 007695 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDD-----RCTASMIAAYGKKNLLDKALNLLLELEKDG---FEPG--P 467 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~-----~t~~~li~a~~~~g~~~~A~~l~~~m~~~g---~~p~--~ 467 (592)
..+...+..+...|++++|...+.+........+. ..+..+...+...|++++|+..+.+..+.. ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44555667777888888888888777664322111 123345556677788888888888776531 1122 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-C
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISE---LGEA-P--PFKIQVSLCDMYARAGIEKKALQALGFLEAKK----EQM-G 536 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~---~g~~-p--~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~ 536 (592)
.+|+.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|...+++..... ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5777888888888888888888888762 2111 1 12577888888889999999998888765421 111 1
Q ss_pred HHHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 007695 537 PDDFERIINGLLAGGFLQDA-QRVHGLME 564 (592)
Q Consensus 537 ~~~~~~li~a~~~~g~~~~A-~~l~~~m~ 564 (592)
..+|..+...|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45678888888899999888 66676654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00071 Score=72.10 Aligned_cols=334 Identities=9% Similarity=-0.085 Sum_probs=202.6
Q ss_pred ccC-CchhHHHHHHhhcCCCHhhHHHHHHHHHhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 007695 203 KEE-DPSPLLAEWKELLQPSRIDWINLLDRLREQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENC-LEDAERIL 280 (592)
Q Consensus 203 ~~g-~~~~A~~~~~~~~~p~~~t~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~-~~~A~~l~ 280 (592)
+.| +++.|+.+|++++ .-+-.++.+.+..+++..+.. .|++..|...+....+.+. .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMSKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHTTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 456 4888888888762 112125677778888887753 5799999998888877764 45677888
Q ss_pred HHHHHC-CCCC-CHHHHHHHHHHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------------cC
Q 007695 281 KKMNEN-GIVP-DIVTSTVLVHMYS----KAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN-------------AG 341 (592)
Q Consensus 281 ~~m~~~-g~~p-d~~~~~~Li~~~~----~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~-------------~g 341 (592)
+..... |..| +...|...+..+. ..++++.+..+|++........-...|......-.. .+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 887654 5333 6677877776654 356788999999999874211112233322221111 11
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG--D-----VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPD 414 (592)
Q Consensus 342 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g--~-----~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~ 414 (592)
.+..|..+++.+...--..+...|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 22334444444432100013345555555433221 1 345677888888754 667888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHHcCC
Q 007695 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKD---------GFEP---GPATYTVLVDWLGRLQL 482 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~---------g~~p---~~~ty~~li~~~~~~g~ 482 (592)
.|..+|++.... |+...+.. .|+.....++. +..+.+. +..+ ....|...+..+.+.+.
T Consensus 231 ~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~ 301 (493)
T 2uy1_A 231 KAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG 301 (493)
T ss_dssp HHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC
Confidence 999999999987 44332221 23222111111 2222211 0011 12456666777777888
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 007695 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAG-IEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHG 561 (592)
Q Consensus 483 ~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~ 561 (592)
++.|..+|.+. ... ..+..+|...+..-...+ +.+.|..+|+...+. .+-++..|...+....+.|+.+.|..+|+
T Consensus 302 ~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 302 LELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp HHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999 322 235566654443333334 699999999998876 33356677778888888999999998888
Q ss_pred HH
Q 007695 562 LM 563 (592)
Q Consensus 562 ~m 563 (592)
..
T Consensus 379 r~ 380 (493)
T 2uy1_A 379 RL 380 (493)
T ss_dssp HS
T ss_pred HH
Confidence 75
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00023 Score=71.69 Aligned_cols=172 Identities=6% Similarity=-0.015 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 007695 236 NTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKEN-CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA-G-NLDRAK 312 (592)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~-g-~~~~A~ 312 (592)
..+.++.....++... +.+..+|+.--.++...| .+++++.+++.+.....+ +..+|+.-..++.+. + ++++++
T Consensus 69 ~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 3567888888887643 345556888777777888 599999999999988655 788888877777776 7 899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCch--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-------
Q 007695 313 EAFESLRSHGFQPDKKVYNSMIMAYVNAGQPK--------LGMSLVDMMITSGIERSEEIYLALLRSFAQCGD------- 377 (592)
Q Consensus 313 ~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~------- 377 (592)
++++.+.+.. +.|-.+|+.-...+.+.+.++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 9999999775 568889998877777777777 999999999997654 88999998888888876
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~ 413 (592)
++++++.+++..... +-|...|+-+-..+.+.|..
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 688999998888876 66888898887777776654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-05 Score=69.24 Aligned_cols=128 Identities=8% Similarity=-0.012 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..+..+...+...|++++|...|.+..... +.+..++..+..++...|++++|...+....... +.+..++..+..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 355666666777777777777777776643 2256667777777777777777777777766654 44566677777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTA--SMIAAYGKKNLLDKALNLLLEL 458 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~--~li~a~~~~g~~~~A~~l~~~m 458 (592)
...|++++|...|++.....+. +...+. .....+...|++++|+..+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777776664332 333332 2233355566666666666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.2e-05 Score=64.35 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 354 (592)
.|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33344444444444444444444443321 2233333344444444444444444444433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.3e-05 Score=66.86 Aligned_cols=94 Identities=10% Similarity=-0.045 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
|......|.+.|++++|++.|++..+... .+...|..+..+|.+.|++++|...|++..+.. +.+..+|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 33344444444444444444444433311 133344444444444444444444444443322 2233344444444444
Q ss_pred cCCchHHHHHHHHHHH
Q 007695 340 AGQPKLGMSLVDMMIT 355 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~ 355 (592)
.|++++|+..|++.++
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-05 Score=66.13 Aligned_cols=26 Identities=8% Similarity=-0.134 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
.+..+...|...|++++|...++...
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 33333333333333333333333333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.8e-05 Score=66.93 Aligned_cols=59 Identities=10% Similarity=-0.034 Sum_probs=22.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
|..+...+.+.|++++|...|++..+.. +.+...+..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444444444444444433321 1133333333334444444444444444333
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=8.2e-06 Score=75.07 Aligned_cols=155 Identities=14% Similarity=0.040 Sum_probs=72.1
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHHcCC
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRS----HGFQ-PDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~----~g~~-pd~~t~~~li~a~~~~g~ 342 (592)
...|++++|.++++.+... ......++..+...|...|++++|...|++... .+.. ....+++.+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456666666644444331 122455566666666666777776666666553 1111 123345555555666666
Q ss_pred chHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHHHcC
Q 007695 343 PKLGMSLVDMMITS----GIER--SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF---QPT--LESCTLLVEAYGQAG 411 (592)
Q Consensus 343 ~~~A~~l~~~m~~~----g~~p--~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~Li~~~~~~g 411 (592)
+++|...+.+.... +-.+ ...++..+...+...|++++|...+++.....- .+. ..++..+...|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 66666655554432 1011 122344444555555555555555554432100 000 122344444455555
Q ss_pred CHHHHHHHHHHH
Q 007695 412 DPDQARSNFDYM 423 (592)
Q Consensus 412 ~~~~A~~lf~~m 423 (592)
++++|...|++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555444443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.26 E-value=8e-05 Score=73.43 Aligned_cols=166 Identities=7% Similarity=-0.025 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC---CCC--HH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPD-----IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF---QPD--KK 328 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~~ 328 (592)
.+...+..+...|++++|.+.+....+.....+ ...+..+...+...|++++|...|++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566777788888888888887766532211 12233455556667788888888877764321 111 34
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCC-CH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMIT---S-GIER--SEEIYLALLRSFAQCGDVRGAGQITNIMRIEE----FQP-TL 397 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~---~-g~~p--~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g----~~~-~~ 397 (592)
+|+.+...|...|++++|...|++..+ . +..+ ...++..+...|.+.|++++|...+++..... ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677777777777777777777777652 1 1111 11466666777777777777777776655321 111 14
Q ss_pred HHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 007695 398 ESCTLLVEAYGQAGDPDQA-RSNFDYMI 424 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~~A-~~lf~~m~ 424 (592)
.+|..+...|.+.|++++| ...|++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5566666667777777666 55555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.9e-05 Score=66.27 Aligned_cols=101 Identities=10% Similarity=-0.147 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~ 547 (592)
..+......|.+.|++++|...|++..+.... +..+|..+..+|.+.|++++|...|++..+.+ +.++..|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 34455556666666666666666666655433 56666666666667777777777766666552 33455666666667
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 548 LAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 548 ~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
...|++++|++.|++..+. .|+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCC
Confidence 7777777777777666653 4554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.9e-06 Score=81.96 Aligned_cols=191 Identities=10% Similarity=-0.030 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 326 DKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVE 405 (592)
Q Consensus 326 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~ 405 (592)
+...+..+...+.+.|++++|...|++.+... +-+...|..+..+|.+.|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455555566666666666666666665542 1255566666666666666666666666665543 345566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007695 406 AYGQAGDPDQARSNFDYMIRLGH----KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481 (592)
Q Consensus 406 ~~~~~g~~~~A~~lf~~m~~~g~----~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 481 (592)
+|...|++++|...|.+.....+ ..+...+..+ ...+. . -+..........+......+.. + ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~------~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKK------K-RWNSIEERRIHQESELHSYLTR-L-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHH------H-HHHHHHHTCCCCCCHHHHHHHH-H-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHH------H-HHHHHHHHHHhhhHHHHHHHHH-H-HHH
Confidence 66677777777666666554211 0011111111 11111 1 1111222223333333332222 1 246
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 007695 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARA-GIEKKALQALGFLEA 530 (592)
Q Consensus 482 ~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~-g~~~~A~~~~~~m~~ 530 (592)
+.++|.+.++...+.... +......+...+.+. +.+++|.++|..+.+
T Consensus 150 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 150 ERERELEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 667777766666554221 333333444444444 556777777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.5e-05 Score=65.17 Aligned_cols=97 Identities=10% Similarity=0.012 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 327 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
...|..+...+...|++++|...|++..... +.+..++..+..+|...|++++|...++...... +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3344444444445555555555554444432 1134444444445555555555555555444433 2334445555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 007695 407 YGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~ 425 (592)
|.+.|++++|...|++...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-05 Score=73.12 Aligned_cols=96 Identities=13% Similarity=-0.098 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----H
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISEL----GEAP--PFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QMG----P 537 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~ 537 (592)
.+..+...+...|++++|...+++.... +..+ ....+..+...+...|++++|...+++...... ..+ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444555555555555555544322 1011 123455555566666666666666655442100 011 1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 538 DDFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 538 ~~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
.++..+...+...|++++|.+.+++..
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 124555666666677777666666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=3.7e-05 Score=64.50 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+....... +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 445555555555566666666665555432 2245555555666666666666666666655543 33455566666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007695 408 GQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~ 447 (592)
...|++++|...|++.....+. +...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 6666666666666665554321 34444444444444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.5e-05 Score=71.95 Aligned_cols=117 Identities=10% Similarity=0.072 Sum_probs=46.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCc--hHH
Q 007695 270 ENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMA-YVNAGQP--KLG 346 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a-~~~~g~~--~~A 346 (592)
.|++++|...|+...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444444444444332 1234444444444444444444444444444322 2233344444444 3344444 444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 347 MSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 347 ~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
...+++..... +-+...+..+...|...|++++|...++...
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44444444332 1123333334444444444444444444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.8e-05 Score=76.96 Aligned_cols=122 Identities=9% Similarity=-0.075 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD----------------KKVYNSMIMAYVNAGQPKLGMSLVDMMI 354 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t~~~li~a~~~~g~~~~A~~l~~~m~ 354 (592)
+...|..+...|.+.|++++|...|++..+.. |+ ..+|..+..+|.+.|++++|+..+++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777888888888888887777542 22 2344444444444444444444444444
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 355 ~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
+.. +.+...|..+..+|...|++++|...|+...+.. +.+..++..+..++.+.|+.++|
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 332 1133344444444444444444444444443332 22333333444444444443333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.3e-05 Score=70.76 Aligned_cols=117 Identities=14% Similarity=0.081 Sum_probs=49.0
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCH--HHHH
Q 007695 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA-YGQAGDP--DQAR 417 (592)
Q Consensus 341 g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~-~~~~g~~--~~A~ 417 (592)
|++++|...+++..... +.+...+..+...|...|++++|...|+...... +.+...+..+..+ |...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 34444444444443322 1233444444444444444444444444444332 2234444444444 4444444 4444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 418 SNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 418 ~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
..|++.....+. +...+..+..+|...|++++|...|....+
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444443221 233344444444444455555444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.15 E-value=9.7e-06 Score=79.82 Aligned_cols=194 Identities=10% Similarity=-0.027 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007695 361 SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIA 440 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~ 440 (592)
+...+..+...+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...+++.....+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 56778888999999999999999999999875 557899999999999999999999999999885442 6778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 441 AYGKKNLLDKALNLLLELEKDGFEPGP-ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEK 519 (592)
Q Consensus 441 a~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~ 519 (592)
+|...|++++|...|....+.. |+. ..+...+....+ ...+.. +..........+......+... ..|+.+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 9999999999999999876531 210 011111111111 111111 1222233344455555554333 368899
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHC
Q 007695 520 KALQALGFLEAKKEQMG-PDDFERIINGLLAG-GFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 520 ~A~~~~~~m~~~~~~~~-~~~~~~li~a~~~~-g~~~~A~~l~~~m~~~ 566 (592)
+|.+.++...+. .|+ ......+...+.+. +.+++|.++|.+..+.
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999988877664 333 33334444444444 6788899999887653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.15 E-value=4.4e-05 Score=77.18 Aligned_cols=132 Identities=11% Similarity=-0.082 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD--------------IVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
+...|..+...|.+.|++++|...|++......... ...|..+..+|.+.|++++|...|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777778888888888888887776532211 467777888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 007695 322 GFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGA-GQITNIMR 389 (592)
Q Consensus 322 g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A-~~~~~~m~ 389 (592)
. +.+..+|..+..+|...|++++|+..|++.++.. +-+...+..+..++.+.|+.+++ ..++..|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4467777788888888888888888888877753 23566777777777777777766 33455444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.15 E-value=3.1e-05 Score=68.51 Aligned_cols=101 Identities=12% Similarity=-0.065 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~ 547 (592)
..+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++....+ +-++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 44555666677777777777777777766544 66777777777777777777777777776653 33566677777777
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 548 LAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 548 ~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
...|++++|++.|++..+. .|+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCH
Confidence 7777777777777777664 3444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.14 E-value=8.5e-05 Score=65.64 Aligned_cols=97 Identities=13% Similarity=0.016 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|...|++.....+. +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 3445556666666677777777776666654 445666666666666777777777777666664432 44555566666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007695 442 YGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m~~ 460 (592)
|...|++++|...|++..+
T Consensus 114 ~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666777777666666655
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0017 Score=64.87 Aligned_cols=171 Identities=6% Similarity=-0.123 Sum_probs=109.1
Q ss_pred HHcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007695 268 AKENCLE-DAERILKKMNENGIVPDIVTSTVLVHMYSKAGN----------LDRAKEAFESLRSHGFQPDKKVYNSMIMA 336 (592)
Q Consensus 268 ~~~g~~~-~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~----------~~~A~~~~~~m~~~g~~pd~~t~~~li~a 336 (592)
.+.|.++ +|+.+++.+...+.. +...|+.=-..+...+. +++++.+++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3456554 788888888876433 44555543333322222 567777787777653 4577778777777
Q ss_pred HHHcCC--chHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---
Q 007695 337 YVNAGQ--PKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD-VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA--- 410 (592)
Q Consensus 337 ~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~--- 410 (592)
+.+.++ +++++.++..+.+.... |..+|+.-.-.+...|. ++++++.+..+.... +.|..+|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 777774 67888888888776543 77777777666777777 577888888777766 56777777666665554
Q ss_pred -----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 411 -----------GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYG 443 (592)
Q Consensus 411 -----------g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~ 443 (592)
+.++++++.+.......+. |...|+-+-..+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLG 238 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 3466777777776665443 5555654433333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3e-05 Score=68.21 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
..+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|+...... +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 344444555555555555555555555432 2244555555555555555555555555555443 33445555555555
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 007695 408 GQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 408 ~~~g~~~~A~~lf~~m~~ 425 (592)
...|++++|...|+....
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.09 E-value=9.2e-05 Score=72.17 Aligned_cols=185 Identities=13% Similarity=0.022 Sum_probs=84.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCCchHHHHHHHHHHHCCCCCC---------------
Q 007695 304 KAGNLDRAKEAFESLRSHGFQPDKKVYNSM-------IMAYVNAGQPKLGMSLVDMMITSGIERS--------------- 361 (592)
Q Consensus 304 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-------i~a~~~~g~~~~A~~l~~~m~~~g~~p~--------------- 361 (592)
..++...|.+.|.+..... +-....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4566666666666666543 3344556555 3344444444444433333322 1111
Q ss_pred -------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---
Q 007695 362 -------EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPD--- 431 (592)
Q Consensus 362 -------~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd--- 431 (592)
......+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+..... |+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCccc
Confidence 1223334444555555555555555554332 22224444444555555555555555433221 11
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 432 -DRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG--PATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 432 -~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11333344455555555555555555443221132 123333444455555555555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=8.8e-06 Score=75.21 Aligned_cols=122 Identities=11% Similarity=-0.043 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCC-C--------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIE-R--------------SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF 393 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~-p--------------~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~ 393 (592)
.+..+...+...|++++|...|.+....... | ...++..+..+|.+.|++++|...++......
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444444555555555555555555442111 0 02455556666666666666666666665553
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007695 394 QPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452 (592)
Q Consensus 394 ~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 452 (592)
+.+..++..+..+|...|++++|...|++.....+. +...+..+..++...++..++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666553221 3444444444444444444443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00013 Score=59.87 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m 318 (592)
..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 333333344444444444444433321 113333333333333344444444444333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=6.2e-06 Score=76.24 Aligned_cols=156 Identities=8% Similarity=-0.016 Sum_probs=94.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----------------HHH
Q 007695 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD----------------KKV 329 (592)
Q Consensus 266 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t 329 (592)
.....|+++.+.+.++.-.... ......+..+...+...|++++|...|++..... +.+ ..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHH
Confidence 3344455555555444221110 0134456666777777788888888887777542 112 267
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQ 409 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~ 409 (592)
|..+..+|...|++++|+..+++.+... +.+...+..+..+|...|++++|...|+...... +.+...+..+..++..
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHH
Confidence 7788888888888888888888887753 3367788888888888888888888888887765 4567777777777777
Q ss_pred cCCHHHHH-HHHHHHHH
Q 007695 410 AGDPDQAR-SNFDYMIR 425 (592)
Q Consensus 410 ~g~~~~A~-~lf~~m~~ 425 (592)
.++.+++. ..|..|..
T Consensus 169 ~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 77666665 44555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=2.5e-05 Score=68.70 Aligned_cols=95 Identities=14% Similarity=0.020 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~ 548 (592)
.+..+...+...|++++|...|+........ +...|..+..+|...|++++|...|++....+ +.++..|..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3334444455555555555555555444332 44455555555555555555555555554432 223444455555555
Q ss_pred hCCCHHHHHHHHHHHHH
Q 007695 549 AGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 549 ~~g~~~~A~~l~~~m~~ 565 (592)
..|++++|++.|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0001 Score=71.85 Aligned_cols=190 Identities=12% Similarity=0.016 Sum_probs=114.0
Q ss_pred HcCCchHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhCCCHHHHHHHHHHHHH------------cCCC-----
Q 007695 339 NAGQPKLGMSLVDMMITSGIERSEEIYLAL-------LRSFAQCGDVRGAGQITNIMRI------------EEFQ----- 394 (592)
Q Consensus 339 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L-------l~~~~~~g~~~~A~~~~~~m~~------------~g~~----- 394 (592)
..++...|.+.|.+....... ....|+.+ ...+.+.++..+++..+..-.. .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 567888888888888876432 56666655 3444444444444443333332 1100
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 007695 395 ---PTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG--PAT 469 (592)
Q Consensus 395 ---~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~--~~t 469 (592)
.-...+..+...+...|++++|.++|+.+...+ |+......+...|.+.+++++|+..|....... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 002344556677777888888888887776543 333344445556777788888888876443311 111 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 470 YTVLVDWLGRLQLINEAEQLLGKISELGEAPP--FKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 470 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 56667777777788888777777764332243 2355566667777777777777777777653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00015 Score=59.46 Aligned_cols=113 Identities=11% Similarity=-0.008 Sum_probs=93.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
+...+..+...+...|++++|...|+...... +.+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45677888899999999999999999988753 4578889999999999999999999999998864 336888999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
++...|++++|...+....... +.+...+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 9999999999999999988765 4455665555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.006 Score=60.93 Aligned_cols=154 Identities=12% Similarity=0.031 Sum_probs=101.1
Q ss_pred HHcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------chHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 303 SKAGNLD-RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ----------PKLGMSLVDMMITSGIERSEEIYLALLRS 371 (592)
Q Consensus 303 ~~~g~~~-~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 371 (592)
.+.|.+. +|+.+++.+.... +-+..+|+.--..+...+. +++++.+++.+.....+ +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3556655 7899999888764 3455567654444433332 56777777777775433 67777776666
Q ss_pred HHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 007695 372 FAQCG--DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD-PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKK--- 445 (592)
Q Consensus 372 ~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~--- 445 (592)
+.+.+ .+++++.+++.+.+.. +.|..+|+.-...+...|. ++++++.++.+....+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 76766 3778888888888776 6677777777777777777 57888888888776553 666666555444443
Q ss_pred -----------CCHHHHHHHHHHHHH
Q 007695 446 -----------NLLDKALNLLLELEK 460 (592)
Q Consensus 446 -----------g~~~~A~~l~~~m~~ 460 (592)
+.+++++..+.....
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~ 221 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFF 221 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHH
Confidence 235555666655554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00016 Score=61.00 Aligned_cols=96 Identities=7% Similarity=-0.157 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~ 548 (592)
.+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...+++....+ +.++..|..+..+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4444555556666666666666666554433 55666666666666666666666666665542 234555666666666
Q ss_pred hCCCHHHHHHHHHHHHHC
Q 007695 549 AGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 549 ~~g~~~~A~~l~~~m~~~ 566 (592)
..|++++|+..|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666666543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00021 Score=60.17 Aligned_cols=89 Identities=12% Similarity=-0.073 Sum_probs=34.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL 447 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~ 447 (592)
+...+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|...|++.....+. +...|..+..+|...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhC
Confidence 3333344444444444444433332 223334444444444444444444444444332211 23333333344444444
Q ss_pred HHHHHHHHHHH
Q 007695 448 LDKALNLLLEL 458 (592)
Q Consensus 448 ~~~A~~l~~~m 458 (592)
+++|...|++.
T Consensus 88 ~~~A~~~~~~a 98 (126)
T 3upv_A 88 YASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00024 Score=60.59 Aligned_cols=96 Identities=9% Similarity=-0.154 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING 546 (592)
Q Consensus 467 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a 546 (592)
...+..+...+...|++++|...|+........ +...+..+..+|...|++++|...++.....+ +.++..|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 334444444444444444444444444443322 34444444444444555555555444444432 2234444444444
Q ss_pred HHhCCCHHHHHHHHHHHH
Q 007695 547 LLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 547 ~~~~g~~~~A~~l~~~m~ 564 (592)
|...|++++|+..|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00015 Score=62.96 Aligned_cols=92 Identities=12% Similarity=-0.063 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 007695 437 SMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAG 516 (592)
Q Consensus 437 ~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g 516 (592)
.+...+.+.|++++|...|+...... +.+...+..+..++...|++++|...|++....... +...+..+..+|...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 34444455555555555555544422 123444444455555555555555555555444332 3344444555555555
Q ss_pred CHHHHHHHHHHHHH
Q 007695 517 IEKKALQALGFLEA 530 (592)
Q Consensus 517 ~~~~A~~~~~~m~~ 530 (592)
++++|...|+....
T Consensus 101 ~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 101 DLDGAESGFYSARA 114 (142)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00026 Score=62.83 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 327 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
...|..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|...|+...... +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344455555555555555555555554432 1144445555555555555555555555554443 3334445555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 007695 407 YGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~ 425 (592)
|...|++++|...|++...
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555554444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00022 Score=60.65 Aligned_cols=59 Identities=7% Similarity=-0.122 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 365 YLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 365 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
+..+...+.+.|++++|...|++..... +.+..+|+.+..+|.+.|++++|+..|++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444433 3334444444444444444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.93 E-value=8.6e-05 Score=60.41 Aligned_cols=99 Identities=7% Similarity=-0.054 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQP--DKKVYNSMI 334 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~li 334 (592)
...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...|++..+.. +. +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3455666667777777777777777776653 2256667777777777777777777777777653 33 466777777
Q ss_pred HHHHHc-CCchHHHHHHHHHHHCC
Q 007695 335 MAYVNA-GQPKLGMSLVDMMITSG 357 (592)
Q Consensus 335 ~a~~~~-g~~~~A~~l~~~m~~~g 357 (592)
.++... |++++|.+.++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777776543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00033 Score=60.29 Aligned_cols=98 Identities=12% Similarity=-0.042 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYN 331 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~ 331 (592)
+...+..+...+.+.|++++|.+.|++..+. .|+ ...|..+..+|...|++++|...|++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4555566666666666666666666666553 344 4555555666666666666666666655432 23455555
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHC
Q 007695 332 SMIMAYVNAGQPKLGMSLVDMMITS 356 (592)
Q Consensus 332 ~li~a~~~~g~~~~A~~l~~~m~~~ 356 (592)
.+..+|...|++++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5555666666666666666655543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00023 Score=60.59 Aligned_cols=103 Identities=12% Similarity=-0.041 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE--QMG----PDDFER 542 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~--~~~----~~~~~~ 542 (592)
.+..+...+.+.|++++|...|++.++.... +...|..+..+|...|++++|+..+++..+.+. ..+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4455566666777777777777776665443 566677777777777777777777766654311 111 124566
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 007695 543 IINGLLAGGFLQDAQRVHGLMEAQGFAASERL 574 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 574 (592)
+..++...|++++|++.|++.+.. .||+.+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 667777777777777777776653 455533
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00027 Score=62.81 Aligned_cols=99 Identities=10% Similarity=0.019 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 291 DIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 291 d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
+...|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++.+... +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666666666666666665543 3355566666666666666666666666666543 224556666666
Q ss_pred HHHhCCCHHHHHHHHHHHHHc
Q 007695 371 SFAQCGDVRGAGQITNIMRIE 391 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~ 391 (592)
+|...|++++|...|++....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00031 Score=59.80 Aligned_cols=96 Identities=8% Similarity=-0.076 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 327 KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEA 406 (592)
Q Consensus 327 ~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~ 406 (592)
...|..+...+...|++++|...|.+..... +.+...+..+..+|...|++++|...++...... +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3334444444444444444444444443322 1133344444444444444444444444444332 2233444444444
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 007695 407 YGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~ 424 (592)
|...|++++|...|.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444444444444444433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00073 Score=70.05 Aligned_cols=197 Identities=10% Similarity=0.026 Sum_probs=139.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCC
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPD----------------IVTSTVLVHMYSKAGNLDRAKEAFESLRSH-GFQPD 326 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd----------------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~pd 326 (592)
...+.+.|++++|.+.|..+.+...... ...+..|...|.+.|++++|.+.+..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456788999999999999887532211 124678899999999999999999887642 11122
Q ss_pred H----HHHHHHHHHHHHcCCchHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CC--
Q 007695 327 K----KVYNSMIMAYVNAGQPKLGMSLVDMMIT----SGIERS-EEIYLALLRSFAQCGDVRGAGQITNIMRIE--EF-- 393 (592)
Q Consensus 327 ~----~t~~~li~a~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~--g~-- 393 (592)
. .+.+.+-..+...|+++.|..++..... .+..+. ..++..+...|...|++++|..++.++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 1233333444456888999998887754 232332 567788999999999999999999987653 11
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 394 QP-TLESCTLLVEAYGQAGDPDQARSNFDYMIRL--GH-KPD---DRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 394 ~~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~--g~-~pd---~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
.+ ...++..++..|...|++++|..++++.... .. .|. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2567888999999999999999999887652 12 221 24566667777888999999988877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00014 Score=60.94 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m 318 (592)
|..+...+...|++++|...|++..... +.+...+..+...|...|++++|...|++.
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3333444444444444444444443321 113333334444444444444444444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00016 Score=60.61 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH--KPD----DRCTAS 437 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~--~pd----~~t~~~ 437 (592)
.+..+...+...|+++.|...+....... +.+...+..+...|...|++++|...|++...... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 33444444444455555555554444433 33344444445555555555555555544443211 111 333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 007695 438 MIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
+..+|...|++++|...|....+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444445555555555544444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00058 Score=70.83 Aligned_cols=165 Identities=8% Similarity=-0.100 Sum_probs=85.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHH
Q 007695 400 CTLLVEAYGQAGDPDQARSNFDYMIRL-GHKPDDR----CTASMIAAYGKKNLLDKALNLLLELEK----DGFEPG-PAT 469 (592)
Q Consensus 400 ~~~Li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~----t~~~li~a~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t 469 (592)
+..+...|.+.|++++|...+..+... +..++.. ..+.+-..+...|+.+.|..++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445566666666666666666555441 1111111 112222223344666666666655432 122222 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HH
Q 007695 470 YTVLVDWLGRLQLINEAEQLLGKISEL----GEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAKK--EQMG----PD 538 (592)
Q Consensus 470 y~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~--~~~~----~~ 538 (592)
+..+...+...|++++|..+++.+... +..+ ...++..++..|...|++++|..++++..... ...+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 566666667777777777666665432 1111 23456666677777777777777766554311 1111 12
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 539 DFERIINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~~l~~~m~ 564 (592)
.+..++..+...|++++|...|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34445555666677777766665554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00063 Score=58.43 Aligned_cols=96 Identities=13% Similarity=-0.088 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 007695 433 RCTASMIAAYGKKNLLDKALNLLLELEKDGFEPG----PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSL 508 (592)
Q Consensus 433 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~L 508 (592)
..+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++....... +...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHHH
Confidence 34444444444555555555555544432 233 334444444455555555555555554443222 34445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 007695 509 CDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 509 i~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..+|...|++++|...|++....
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555555555555555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00027 Score=61.26 Aligned_cols=87 Identities=15% Similarity=0.023 Sum_probs=34.3
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 007695 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLD 449 (592)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~ 449 (592)
..+.+.|++++|...|+...... +.+...|..+..+|.+.|++++|...|+......+. +...+..+..+|...|+++
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHH
Confidence 33344444444444444443332 223334444444444444444444444444332221 2233333333444444444
Q ss_pred HHHHHHHHH
Q 007695 450 KALNLLLEL 458 (592)
Q Consensus 450 ~A~~l~~~m 458 (592)
+|...|+..
T Consensus 104 ~A~~~~~~a 112 (142)
T 2xcb_A 104 GAESGFYSA 112 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00011 Score=59.64 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
.+..+...|...|++++|...|++..
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333333333333333333333333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00033 Score=59.06 Aligned_cols=92 Identities=11% Similarity=-0.134 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 007695 472 VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGG 551 (592)
Q Consensus 472 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g 551 (592)
.+...+.+.|++++|...+++..+.... +...|..+..++...|++++|...|++....+ +-++..|..+..+|...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3445566666777777777666665443 56666666677777777777777777666652 234556666666777777
Q ss_pred CHHHHHHHHHHHHH
Q 007695 552 FLQDAQRVHGLMEA 565 (592)
Q Consensus 552 ~~~~A~~l~~~m~~ 565 (592)
++++|+..|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00032 Score=60.91 Aligned_cols=61 Identities=11% Similarity=-0.043 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 399 SCTLLVEAYGQAGDPDQARSNFDYMIRLGH-KPD----DRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 399 ~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
++..+...|...|++++|...+++...... .++ ..++..+...|...|++++|...+++..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555555555555555555443210 011 1234444555555555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00038 Score=60.45 Aligned_cols=131 Identities=17% Similarity=0.051 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCchHHHHHHHHHHHCC----CCC-CHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGF-QPD----KKVYNSMIMAYVNAGQPKLGMSLVDMMITSG----IER-SEE 363 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g----~~p-~~~ 363 (592)
++..+...|...|++++|...|++..+..- .++ ..++..+...|...|++++|...+++..... ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444455555555555555544432100 001 1244444455555555555555554443310 000 022
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIE----EFQ-PTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
++..+...+...|++++|...+++.... +.. ....++..+...|...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3344444444555555555444443321 000 002233444444445555555555444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00048 Score=57.98 Aligned_cols=60 Identities=13% Similarity=0.010 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 363 EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 363 ~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
..+..+..++...|++++|...|++..... +.+...+..+..+|.+.|++++|...|++.
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 52 EAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333344444444333333332 223333333333444444444444444333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0022 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 007695 297 VLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
.+..++...|++++|...|+...
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444444444444444433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0015 Score=54.80 Aligned_cols=88 Identities=14% Similarity=-0.027 Sum_probs=39.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 007695 476 WLGRLQLINEAEQLLGKISELGEAPPF---KIQVSLCDMYARAGIEKKALQALGFLEAKKEQMG---PDDFERIINGLLA 549 (592)
Q Consensus 476 ~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~a~~~ 549 (592)
.+...|++++|...++.+.+.... +. ..+..+..+|...|++++|...|+.+..... .+ +..+..+..+|..
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHH
Confidence 344444444444444444443221 11 3444444445555555555555555444321 11 3334444555555
Q ss_pred CCCHHHHHHHHHHHHH
Q 007695 550 GGFLQDAQRVHGLMEA 565 (592)
Q Consensus 550 ~g~~~~A~~l~~~m~~ 565 (592)
.|++++|...|+++..
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00057 Score=72.12 Aligned_cols=88 Identities=7% Similarity=-0.005 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
.+|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+...+.. +.+..++..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555554432 1244455555555555555555555555554432 22344455555555
Q ss_pred HHcCCHHHHH
Q 007695 408 GQAGDPDQAR 417 (592)
Q Consensus 408 ~~~g~~~~A~ 417 (592)
.+.++.+++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00084 Score=70.81 Aligned_cols=95 Identities=8% Similarity=0.055 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
..+|..+..+|.+.|++++|...++...... +.+..+|..+..+|...|++++|...|++..+..+. +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4567777777888888888888888777765 456777777777888888888888888777764332 34456666666
Q ss_pred HHhcCCHHHHH-HHHHHH
Q 007695 442 YGKKNLLDKAL-NLLLEL 458 (592)
Q Consensus 442 ~~~~g~~~~A~-~l~~~m 458 (592)
+.+.++.+++. .++..|
T Consensus 395 ~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 66666666554 334444
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00083 Score=68.73 Aligned_cols=86 Identities=2% Similarity=-0.139 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 328 KVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAY 407 (592)
Q Consensus 328 ~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~ 407 (592)
.+|+.+..+|.+.|++++|+..+++.++.. +-+...|..+..+|...|++++|...|++..+.. +.+...+..+...+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344455555555555555555555554432 1134444555555555555555555555544442 22344444444444
Q ss_pred HHcCCHHH
Q 007695 408 GQAGDPDQ 415 (592)
Q Consensus 408 ~~~g~~~~ 415 (592)
...++.++
T Consensus 352 ~~~~~~~~ 359 (370)
T 1ihg_A 352 QKIKAQKD 359 (370)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00027 Score=58.91 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=46.2
Q ss_pred cCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 340 AGQPKLGMSLVDMMITSG--IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQAR 417 (592)
Q Consensus 340 ~g~~~~A~~l~~~m~~~g--~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 417 (592)
.|++++|+..|++.++.+ -+-+..++..+..+|...|++++|...|++..+.. +-+..++..+..+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355555666665555532 11134455555566666666666666666665554 344556666666666666666666
Q ss_pred HHHHHHHH
Q 007695 418 SNFDYMIR 425 (592)
Q Consensus 418 ~lf~~m~~ 425 (592)
..|++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666555
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00024 Score=75.52 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=62.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 007695 301 MYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRG 380 (592)
Q Consensus 301 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~ 380 (592)
.+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|+..+++..+.. +-+..++..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555556665555555432 2345555666666666666666666666665543 2245556666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 007695 381 AGQITNIMRIEEFQPTLESCTLLVEA--YGQAGDPDQARSNFD 421 (592)
Q Consensus 381 A~~~~~~m~~~g~~~~~~~~~~Li~~--~~~~g~~~~A~~lf~ 421 (592)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|...++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666665543 2233344444443 666666777776666
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0016 Score=57.55 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 398 ESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 398 ~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
..|..+..+|.+.|++++|...++......+. +...|..+..+|...|++++|...|....+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 44555555555555555555555555553221 344555555555555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00018 Score=59.99 Aligned_cols=86 Identities=14% Similarity=0.076 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHH
Q 007695 270 ENCLEDAERILKKMNENGI--VPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGM 347 (592)
Q Consensus 270 ~g~~~~A~~l~~~m~~~g~--~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 347 (592)
.|++++|+..|++..+.+. +-+...+..+..+|...|++++|...|++..+.. +-+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777766431 2234556667777777777777777777776553 345666777777777777777777
Q ss_pred HHHHHHHHC
Q 007695 348 SLVDMMITS 356 (592)
Q Consensus 348 ~l~~~m~~~ 356 (592)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00032 Score=74.53 Aligned_cols=121 Identities=12% Similarity=-0.006 Sum_probs=73.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
...|.+.|++++|...|++..+.... +..+|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34556677777777777777664332 46667777777777777777777777776642 23456666777777777777
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDM--YARAGIEKKALQALGF 527 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~--~~~~g~~~~A~~~~~~ 527 (592)
++|...+++..+.... +...+..+..+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7777777777665432 23344444444 6666777777766654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.001 Score=68.11 Aligned_cols=123 Identities=9% Similarity=-0.013 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNEN---------------GIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~---------------g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (592)
.+..+...+.+.|++++|...|++..+. --+-+..+|..+..+|.+.|++++|...+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4677888899999999999999988761 011246778899999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQ 383 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~ 383 (592)
+.+..+|..+..+|...|++++|+..|++..+.. +-+...+..+..++...++.+++.+
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999998864 2367777777777777777666543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0015 Score=57.71 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
...|..+..+|.+.|++++|...++...... +.+...|..+..+|...|++++|...|++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3566666777777777777777777777664 456677777777777777777777777777664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.013 Score=63.47 Aligned_cols=171 Identities=6% Similarity=-0.129 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD----------PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKN- 446 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~----------~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g- 446 (592)
.++|.+.++.+.... +-+..+|+.--..+...|+ +++++..++.+....++ +..+|+.--.++.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 456677777777665 4456666666666666655 77777888777776554 6677777777777777
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc---------
Q 007695 447 -LLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ-LINEAEQLLGKISELGEAPPFKIQVSLCDMYARA--------- 515 (592)
Q Consensus 447 -~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~--------- 515 (592)
++++++.+++++.+.. +-|...|+.-..++.+.| .++++.+.+.++.+..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 6678888888777653 235566666666666777 777788888777776655 777777776666653
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 007695 516 -----GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFL 553 (592)
Q Consensus 516 -----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~ 553 (592)
+.++++.+.+++....+ +-+...|+.+...+.+.++.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45678888888777653 34677788777777666653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00046 Score=69.71 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~ 424 (592)
.|..+..+|.+.|++++|...++...... +.+..+|..+..+|...|++++|...|++..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444444444444432 2334444444444444444444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0071 Score=52.03 Aligned_cols=110 Identities=10% Similarity=-0.127 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN----AGQPKLGM 347 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~A~ 347 (592)
++++|.+.|++..+.| .|+.. |...|...+.+++|.+.|++..+.| +...++.|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4555666666665554 22222 4444555555555666666555543 45555555555555 45555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Q 007695 348 SLVDMMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEE 392 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g 392 (592)
.+|++..+.| +...+..|...|.. .++.++|...|+...+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555544 44455555555555 455555555555555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.015 Score=62.97 Aligned_cols=175 Identities=6% Similarity=-0.131 Sum_probs=134.2
Q ss_pred HcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 269 KENC-LEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGN----------LDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 269 ~~g~-~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~----------~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
+.|. -++|++.++.+...+.. +...|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444 46788999988886433 56667766666666666 889999999988765 55778888888888
Q ss_pred HHcC--CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----
Q 007695 338 VNAG--QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCG-DVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA---- 410 (592)
Q Consensus 338 ~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~---- 410 (592)
.+.+ +++++++.++++.+.+.. |..+|+.-...+.+.| .++++.+.++.+.+.. +-|..+|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 8888 569999999999987654 7888888888888888 8889999988888776 56788888887777663
Q ss_pred ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 007695 411 ----------GDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL 448 (592)
Q Consensus 411 ----------g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~ 448 (592)
+.++++.+.+++.....+. |...|+-.-..+.+.+..
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 4578899999888876553 677787777777776663
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.003 Score=54.46 Aligned_cols=111 Identities=14% Similarity=0.044 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHH
Q 007695 306 GNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ----CGDVRGA 381 (592)
Q Consensus 306 g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A 381 (592)
+++++|.+.|++..+.| .|+.. +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 34566666666666655 33332 4445555555566666666666554 45555666666655 5566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 007695 382 GQITNIMRIEEFQPTLESCTLLVEAYGQ----AGDPDQARSNFDYMIRLG 427 (592)
Q Consensus 382 ~~~~~~m~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~lf~~m~~~g 427 (592)
...|+...+.| +...+..|...|.. .+++++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666665544 45555556666655 556666666666555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00068 Score=68.43 Aligned_cols=150 Identities=9% Similarity=-0.061 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVD 475 (592)
Q Consensus 396 ~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 475 (592)
....+..+...+.+.|++++|...|++.... .|+... +...|+..++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3577888889999999999999999998774 244332 233444444443221 136778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhCCCHH
Q 007695 476 WLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIING-LLAGGFLQ 554 (592)
Q Consensus 476 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a-~~~~g~~~ 554 (592)
+|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..... +-++..+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998886544 78889999999999999999999999887652 2244455555554 34456777
Q ss_pred HHHHHHHHHHHC
Q 007695 555 DAQRVHGLMEAQ 566 (592)
Q Consensus 555 ~A~~l~~~m~~~ 566 (592)
.+.++|+.|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888888888654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0056 Score=53.95 Aligned_cols=101 Identities=11% Similarity=-0.099 Sum_probs=66.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCC
Q 007695 472 VLVDWLGRLQLINEAEQLLGKISELGEAP------P-----FKIQVSLCDMYARAGIEKKALQALGFLEAK-----KEQM 535 (592)
Q Consensus 472 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~-----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----~~~~ 535 (592)
.....+.+.|++++|...|++.++..... + ...|..+..++.+.|++++|+..+++..+. ...|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 34444555566666666666555432220 2 237778888888888888888888877764 0133
Q ss_pred -CHHHH----HHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCH
Q 007695 536 -GPDDF----ERIINGLLAGGFLQDAQRVHGLMEA-----QGFAASE 572 (592)
Q Consensus 536 -~~~~~----~~li~a~~~~g~~~~A~~l~~~m~~-----~g~~pd~ 572 (592)
+...| .....++...|++++|+..|++.++ .|+.+..
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 45567 8888999999999999999988764 3555554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0076 Score=53.10 Aligned_cols=61 Identities=13% Similarity=-0.011 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-------CCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIE-------EFQPTLESC----TLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~----~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.|..+..++.+.|++++|...++..... . +-+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444555555555555555555544443 2 2223444 4555555555555555555554433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0032 Score=66.69 Aligned_cols=124 Identities=11% Similarity=-0.032 Sum_probs=62.3
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-C-CHHHHHH
Q 007695 442 YGKKNLLDKALNLLLELEKD---GFEPG----PATYTVLVDWLGRLQLINEAEQLLGKISEL-----GEA-P-PFKIQVS 507 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m~~~---g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~-p-~~~~~~~ 507 (592)
+...|++++|+.++.+..+. -+.|+ ..+++.|..+|...|++++|..++++..+. |.. | ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34455666666555554331 11111 245555666666666666666665554321 221 1 1245556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH---cCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 508 LCDMYARAGIEKKALQALGFLEA---KKEQMG----PDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 508 Li~~~~~~g~~~~A~~~~~~m~~---~~~~~~----~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
|...|...|++++|..++++... .-..++ ..+.+.+-.++...+.+++|..+|+.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655432 111111 12234444555566666666666666654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0031 Score=66.83 Aligned_cols=124 Identities=6% Similarity=-0.093 Sum_probs=61.1
Q ss_pred HHHcCCHHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCCchHHHHHHHHHHHC-----C-CCC-CHHHHHH
Q 007695 302 YSKAGNLDRAKEAFESLRSH---GFQP----DKKVYNSMIMAYVNAGQPKLGMSLVDMMITS-----G-IER-SEEIYLA 367 (592)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~---g~~p----d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~-----g-~~p-~~~t~~~ 367 (592)
+...|++++|..++++.++. -+.| ...+++.|..+|...|++++|..++++.++. | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666555421 1111 1345566666666666666666666554431 1 111 1334555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIE-----EF-QP-TLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|...|...|++++|..++.+.... |- .| ...+.+.+..++...+.+++|+.+|..+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666555555554321 20 11 123334445555555556666666555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0035 Score=50.69 Aligned_cols=91 Identities=10% Similarity=0.023 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-------HH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPD-------KK 328 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd-------~~ 328 (592)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34556677777777888888888888777653 226677777777888888888888888877765 333 44
Q ss_pred HHHHHHHHHHHcCCchHHHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSL 349 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l 349 (592)
.+..+..++...|+.+.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhH
Confidence 555555666665655554433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0059 Score=50.18 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=41.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 346 GMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 346 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
|+..|++..+.. +.+...+..+...|...|++++|...|+...... +.+...|..+..+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444445444432 2244555555555555555555555555555543 33455555555566666666666666555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0085 Score=46.36 Aligned_cols=79 Identities=18% Similarity=0.109 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
..+..+...+.+.|++++|...|++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+..++..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555566666666666666666665542 1245555666666666666666666666655432 23444554444444
Q ss_pred H
Q 007695 338 V 338 (592)
Q Consensus 338 ~ 338 (592)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00068 Score=55.12 Aligned_cols=61 Identities=11% Similarity=-0.127 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.+..+...+...|++++|...+++..+.... +...+..+..+|...|++++|...+++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444444555555555555554443322 444455555555555555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.012 Score=45.38 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=6.7
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 007695 300 HMYSKAGNLDRAKEAFES 317 (592)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~ 317 (592)
..+...|++++|...|++
T Consensus 17 ~~~~~~~~~~~A~~~~~~ 34 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQK 34 (91)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHH
Confidence 333333333333333333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.011 Score=48.49 Aligned_cols=79 Identities=14% Similarity=-0.083 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 450 KALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 450 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
.|+..|++..+.. +.+...+..+..++...|++++|...+++....... +...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566555432 234556666666677777777777777776665433 45666666677777777777777766655
Q ss_pred H
Q 007695 530 A 530 (592)
Q Consensus 530 ~ 530 (592)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0053 Score=54.01 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=66.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNL----------DRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~----------~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
.+.+.+++|.+.++...+.... +...|+.+..++...+++ ++|+..|++..+.. +.+..+|+.+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3455677888888877776433 677777777777777654 47888888777654 44567777788887
Q ss_pred HHcC-----------CchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007695 338 VNAG-----------QPKLGMSLVDMMITSGIERSEEIYLALLRS 371 (592)
Q Consensus 338 ~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 371 (592)
...| ++++|++.|++.++. .|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 7654 677777777777763 4555555444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.016 Score=46.40 Aligned_cols=63 Identities=10% Similarity=0.005 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007695 396 TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELE 459 (592)
Q Consensus 396 ~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 459 (592)
+...+..+...|.+.|++++|...|++.....+. +...|..+..+|...|++++|...|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555555555555555555543322 33344445555555555555555555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.019 Score=45.95 Aligned_cols=62 Identities=16% Similarity=0.067 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 467 PATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLE 529 (592)
Q Consensus 467 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 529 (592)
...+..+..+|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444555555555555555555555444332 33445555555555555555555554443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.009 Score=52.53 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007695 415 QARSNFDYMIRLGHKPDDRCTASMIAAYGKK-----------NLLDKALNLLLELEKDGFEPGPATYT 471 (592)
Q Consensus 415 ~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~ty~ 471 (592)
+|+..|++..+..+. +..+|..+-.+|... |++++|+..|++..+ +.|+...|.
T Consensus 64 eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~ 128 (158)
T 1zu2_A 64 EAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYL 128 (158)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHH
Confidence 555555554443222 334444444444443 255555555555554 334444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.14 Score=57.41 Aligned_cols=154 Identities=12% Similarity=-0.020 Sum_probs=84.7
Q ss_pred HHHHHcCCchHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 335 MAYVNAGQPKLGMS-LVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413 (592)
Q Consensus 335 ~a~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~ 413 (592)
......+++++|.+ ++.. + ++......++..+.+.|.++.|.++.+.-. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33445677777765 4421 1 112334777777777888777776553211 112345567888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKI 493 (592)
Q Consensus 414 ~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 493 (592)
+.|.++.+.+ .+...|..+...+.+.|+++.|...|.++.. |..+...+...++.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8887775433 4667788888888888888888877776632 333444444455555544444333
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007695 494 SELGEAPPFKIQVSLCDMYARAGIEKKALQALGF 527 (592)
Q Consensus 494 ~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 527 (592)
...|. ++.-..+|.+.|++++|.+++..
T Consensus 734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 33221 12223334445555555555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.42 Score=53.49 Aligned_cols=46 Identities=15% Similarity=-0.044 Sum_probs=26.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
....|+++.|.++.+.+ .+...|..+...+.+.|+++.|...|..+
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34456666666554332 24556666666666666666666666655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.35 Score=48.53 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 007695 464 EPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDF 540 (592)
Q Consensus 464 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 540 (592)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|...+++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 4456666666655666677777777777777664 56666666667777777777777777766664 3344443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.074 Score=55.24 Aligned_cols=87 Identities=7% Similarity=0.002 Sum_probs=60.4
Q ss_pred HcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHH
Q 007695 269 KENCLEDAERILKKMNEN---GIVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRS-----HG-FQPD-KKVYNSMI 334 (592)
Q Consensus 269 ~~g~~~~A~~l~~~m~~~---g~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-----~g-~~pd-~~t~~~li 334 (592)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++.+. .| -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888888876542 12222 45688888888888888888888887753 12 1222 34677788
Q ss_pred HHHHHcCCchHHHHHHHHHHH
Q 007695 335 MAYVNAGQPKLGMSLVDMMIT 355 (592)
Q Consensus 335 ~a~~~~g~~~~A~~l~~~m~~ 355 (592)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888877777654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.078 Score=41.66 Aligned_cols=56 Identities=18% Similarity=0.002 Sum_probs=31.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 475 DWLGRLQLINEAEQLLGKISELGEAPPFK-IQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 475 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
..+...|++++|...+++..+.... +.. .+..+..+|...|++++|...|++....
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445555666666666655554332 444 5555666666666666666666665554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.076 Score=55.16 Aligned_cols=91 Identities=9% Similarity=-0.049 Sum_probs=52.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCC-HHH
Q 007695 264 IDAHAKENCLEDAERILKKMNENG---IVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRSH-----G-FQPD-KKV 329 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g---~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g-~~pd-~~t 329 (592)
+..+.+.|++++|+.++++..+.. +.|+ ..+++.|...|...|++++|..++++.+.. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556667777777777665431 1222 345666777777777777777766665421 1 0111 235
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHH
Q 007695 330 YNSMIMAYVNAGQPKLGMSLVDMMI 354 (592)
Q Consensus 330 ~~~li~a~~~~g~~~~A~~l~~~m~ 354 (592)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666666665554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.17 Score=52.44 Aligned_cols=88 Identities=14% Similarity=-0.030 Sum_probs=42.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC-CH---HHHHH
Q 007695 477 LGRLQLINEAEQLLGKISELG---EAP----PFKIQVSLCDMYARAGIEKKALQALGFLEAK---KEQM-GP---DDFER 542 (592)
Q Consensus 477 ~~~~g~~~~A~~l~~~m~~~g---~~p----~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---~~~~-~~---~~~~~ 542 (592)
+.+.|++++|..++++..+.. +.| ...+++.|...|...|++++|..++++.... -..+ .+ .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 444555555555555554321 111 1234555555566666666666655544321 0111 11 23555
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 007695 543 IINGLLAGGFLQDAQRVHGLME 564 (592)
Q Consensus 543 li~a~~~~g~~~~A~~l~~~m~ 564 (592)
|...|...|++++|..++++..
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666666666655543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.15 Score=39.86 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=28.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 370 RSFAQCGDVRGAGQITNIMRIEEFQPTLE-SCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
..+.+.|++++|...++...... +.+.. .+..+..+|...|++++|...|++....
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33444555555555555555443 23344 5555555555555555555555555543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.06 Score=55.92 Aligned_cols=24 Identities=0% Similarity=-0.146 Sum_probs=12.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 540 FERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 540 ~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
++.|...|...|++++|..+|++.
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHH
Confidence 444555555555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.81 E-value=1.1 Score=44.97 Aligned_cols=64 Identities=19% Similarity=0.036 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 360 RSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 360 p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 345555555544444566666666666655553 4555555555555666666666666655554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.39 E-value=1.1 Score=39.73 Aligned_cols=130 Identities=10% Similarity=-0.097 Sum_probs=87.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
.....+.|+++.|.++.+.+ -+...|..+-......|+++-|...|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34556789999998887765 4788899999999999999999988887532 33444456667787
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLM 563 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m 563 (592)
+...++-+.....|- ++.-...+.-.|+++++.++|.+... |.--+......|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 776666555554431 34445556678899999888755421 111122223467777888777665
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.43 Score=37.57 Aligned_cols=65 Identities=6% Similarity=-0.091 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 361 SEEIYLALLRSFAQCGD---VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 361 ~~~t~~~Ll~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
|...+..+..++...++ .++|..++++..... +-+..+...+...+.+.|++++|...|+.+...
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 455666666655554 444555555566666666666666666666553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.52 Score=37.73 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 255 TNVRDYSKLIDAHAKENCLEDAERILKKMNENG------IVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 255 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
.+...+..|...+.+.+++..|...|+...+.- -.+....+..|..+|.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344556667777777777777777777655421 1224556666777777777777777777766654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.43 Score=37.58 Aligned_cols=47 Identities=13% Similarity=-0.035 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 483 INEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 483 ~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.++|..++++....... +......+...+...|++++|...|+.+.+
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444443333 344444444444444444444444444444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.14 E-value=0.61 Score=40.40 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---CchHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhCCCHHHHHHH
Q 007695 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG---QPKLGMSLVDMMITSGIER--SEEIYLALLRSFAQCGDVRGAGQI 384 (592)
Q Consensus 310 ~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~Ll~~~~~~g~~~~A~~~ 384 (592)
.+.+.|.+....| .++..+...+..++++.+ +.++++.+|++..+.+ .| +...+-.|.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3344444444333 245555555555555544 3335555555554432 12 233333444444555555555555
Q ss_pred HHHHHHc
Q 007695 385 TNIMRIE 391 (592)
Q Consensus 385 ~~~m~~~ 391 (592)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.07 E-value=1.9 Score=38.25 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=26.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007695 266 AHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLR 319 (592)
Q Consensus 266 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 319 (592)
...+.|+++.|.++.+.+ -+...|..|.......|+++-|.+.|....
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 344555566655555443 145555566665556666665555555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.99 E-value=0.63 Score=40.30 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=9.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 007695 440 AAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 440 ~a~~~~g~~~~A~~l~~~m~~ 460 (592)
-+|.+.|++++|.++++.+.+
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHh
Confidence 344444444444444444444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.39 E-value=1.3 Score=35.20 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=8.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 007695 297 VLVHMYSKAGNLDRAKEAFES 317 (592)
Q Consensus 297 ~Li~~~~~~g~~~~A~~~~~~ 317 (592)
.|...+.+.|++..|...|+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~ 30 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQ 30 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHH
Confidence 333333334444444433333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=1.2 Score=43.00 Aligned_cols=66 Identities=20% Similarity=0.078 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCC
Q 007695 504 IQVSLCDMYARA-----GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG-GFLQDAQRVHGLMEAQGFA 569 (592)
Q Consensus 504 ~~~~Li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~-g~~~~A~~l~~~m~~~g~~ 569 (592)
.|..|...|... |+.++|.+.|++..+.+..-+..++..+...++.. |+.+++.+.+++.+.....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 444444444442 44444444444444432222234444444444442 4444444444444444333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.78 E-value=1.3 Score=38.01 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=47.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHhh
Q 007695 514 RAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVALISS 581 (592)
Q Consensus 514 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~l~~~ 581 (592)
..++.++|.++|+.+....... ...|-....--.+.|+.+.|.+++...+..+.+|...+..++-..
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 3478888888888776543333 555666666667888888888888888888777777666655443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.61 E-value=7.8 Score=40.02 Aligned_cols=162 Identities=14% Similarity=0.050 Sum_probs=83.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC--HHH
Q 007695 366 LALLRSFAQCGDVRGAGQITNIMRIE--EFQPT---LESCTLLVEAYGQAGDPDQARSNFDYMIR----LGHKPD--DRC 434 (592)
Q Consensus 366 ~~Ll~~~~~~g~~~~A~~~~~~m~~~--g~~~~---~~~~~~Li~~~~~~g~~~~A~~lf~~m~~----~g~~pd--~~t 434 (592)
..|...|...|++.+|..++..+... +.... +..+...+..|...+++.+|..++.+... ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45666777777777777777776532 21111 34556667777777888887777776543 111222 134
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007695 435 TASMIAAYGKKNLLDKALNLLLELEKD-GFEPGPATYT----VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509 (592)
Q Consensus 435 ~~~li~a~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li 509 (592)
|...+..+...+++.+|.+.|.+.... ...-+...+. .++.+..-.+....-..++........-++...+..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 455666667777777777777666442 1112222111 11111111111111222222222222223566777788
Q ss_pred HHHHHc--CCHHHHHHHHHH
Q 007695 510 DMYARA--GIEKKALQALGF 527 (592)
Q Consensus 510 ~~~~~~--g~~~~A~~~~~~ 527 (592)
.+|... .++......|..
T Consensus 301 k~f~~~~L~~~~~~~~~~~~ 320 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEP 320 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCS
T ss_pred HHHHhchHhhhHHHHHHHHH
Confidence 887654 345555555543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=1.2 Score=42.87 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCc
Q 007695 273 LEDAERILKKMNENGIVPD---IVTSTVLVHMYSK-----AGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA-GQP 343 (592)
Q Consensus 273 ~~~A~~l~~~m~~~g~~pd---~~~~~~Li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~-g~~ 343 (592)
...|..++++..+. .|+ -..|..|...|.+ .|+.++|.+.|++.++.+-.-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46778888888874 566 5578899999998 499999999999999863112478888899999885 999
Q ss_pred hHHHHHHHHHHHCCCC--CCHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIE--RSEEIYLAL 368 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~--p~~~t~~~L 368 (592)
+.+.+.+++.+..... |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999987766 665544443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=90.55 E-value=7.1 Score=32.92 Aligned_cols=139 Identities=15% Similarity=0.000 Sum_probs=76.8
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007695 373 AQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKAL 452 (592)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~ 452 (592)
.-.|..++..++..+.... .+..-||.+|.-....-+-+...++++..-.. .|. ...|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 4456666666666666653 25556666665555555555555555544331 222 1233333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 007695 453 NLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKK 532 (592)
Q Consensus 453 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~ 532 (592)
..+-.+ ..+...+...++.+...|+-++-.+++..+.. +..|++.....+..+|.+.|+..+|.+++.+.-++|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333222 12334555556666667777777777766543 344566667777777777777777777776666665
Q ss_pred C
Q 007695 533 E 533 (592)
Q Consensus 533 ~ 533 (592)
.
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=1.9 Score=43.83 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 007695 504 IQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA-----QGFAASERLKVAL 578 (592)
Q Consensus 504 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~-----~g~~pd~~~~~~l 578 (592)
....++..+...|++.+|...+..+... .+.+...|..++.+|.+.|+..+|++.|+...+ .|+.|+..+..+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445666777788888888777777665 455677788888888888888888888777653 3888887544443
Q ss_pred H
Q 007695 579 I 579 (592)
Q Consensus 579 ~ 579 (592)
.
T Consensus 252 ~ 252 (388)
T 2ff4_A 252 E 252 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=89.68 E-value=8.4 Score=32.47 Aligned_cols=62 Identities=16% Similarity=0.021 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 007695 506 VSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGF 568 (592)
Q Consensus 506 ~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~ 568 (592)
..-++.....|+-++-.+++..+.. +.+|++...-.+..+|.+.|+..+|.+++++..+.|+
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3334444445555555444444322 2344444444445555555555555555555554443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=88.62 E-value=3 Score=35.85 Aligned_cols=105 Identities=8% Similarity=0.078 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHHhCCCHHHHHHHHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQP------KLGMSLVDMMITSGIERSEE----IYLALLR---SFAQCGDVRGAGQITNIMRI 390 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~Ll~---~~~~~g~~~~A~~~~~~m~~ 390 (592)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+-- .+...++.+.|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34666777777777777777 6677777776663 455421 1111100 01223677777777777765
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 391 EEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430 (592)
Q Consensus 391 ~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p 430 (592)
.. .--...|......-.+.|++..|.+++......+.+|
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 53 2226666666666777888888888888777766654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=88.31 E-value=2.7 Score=35.01 Aligned_cols=81 Identities=12% Similarity=0.127 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchH---HHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHH
Q 007695 310 RAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKL---GMSLVDMMITSGIE-RSEEIYLALLRSFAQCGDVRGAGQIT 385 (592)
Q Consensus 310 ~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~---A~~l~~~m~~~g~~-p~~~t~~~Ll~~~~~~g~~~~A~~~~ 385 (592)
.+.+.|......| .++..+-..+..++++..+... ++.+++++...+.+ -.....-.|.-++.+.|+++.|.+.+
T Consensus 19 ~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 19 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3444444433333 2445555555555555544433 44555554443200 12223333444455555555555555
Q ss_pred HHHHHc
Q 007695 386 NIMRIE 391 (592)
Q Consensus 386 ~~m~~~ 391 (592)
+.+.+.
T Consensus 98 ~~lL~~ 103 (126)
T 1nzn_A 98 RGLLQT 103 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.26 E-value=1.8 Score=47.81 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCC-chHHHHHHHHHHHC------CCCC-CH--
Q 007695 296 TVLVHMYSKAGN-LDRAKEAFESLRSHGFQPDKKVY--NSMIMAYVNAGQ-PKLGMSLVDMMITS------GIER-SE-- 362 (592)
Q Consensus 296 ~~Li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~--~~li~a~~~~g~-~~~A~~l~~~m~~~------g~~p-~~-- 362 (592)
..|+..+...++ ++.|..+|+++.+. .|...++ ..++..+.+.++ --+|.+++.+.++. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 345555555555 47788888888765 3433322 223333322222 22345555444321 1111 11
Q ss_pred --------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 363 --------EIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 363 --------~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
.....-...|...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 122333455778899999999999888774 556889999999999999999999988876
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.21 E-value=20 Score=36.90 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 007695 341 GQPKLGMSLVDMMIT-----SGIERSEEIYLALLRSFAQCGDVRGAGQITNIMR 389 (592)
Q Consensus 341 g~~~~A~~l~~~m~~-----~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~ 389 (592)
++++.|++.+..+.+ .+...+......++..|...++++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 556666666555543 1233445566667777777777766655555444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=87.32 E-value=2.5 Score=35.21 Aligned_cols=65 Identities=12% Similarity=-0.061 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 501 PFKIQVSLCDMYARAGIEKK---ALQALGFLEAKKEQ-MGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~~~~---A~~~~~~m~~~~~~-~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+..+-..+..++.+..+... ++.+++.+...+.+ -..+..-.|.-++.+.|++++|.+.++.+++
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44444444555555444433 44444444333100 0122233344455555555555555555554
|
| >2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa} | Back alignment and structure |
|---|
Probab=85.14 E-value=0.31 Score=26.61 Aligned_cols=19 Identities=42% Similarity=0.721 Sum_probs=13.4
Q ss_pred ccCCCCCCcc-ccHHHHHHH
Q 007695 23 ESASASPSQD-FSEDLWRTV 41 (592)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~~~ 41 (592)
|..+-..|+| |||.||+++
T Consensus 3 grpsvftsqdylsdhlwral 22 (26)
T 2xl1_A 3 GRPSVFTSQDYLSDHLWRAL 22 (26)
T ss_pred CCCceeecHHHHHHHHHHHH
Confidence 4444566666 799999975
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.45 E-value=5.8 Score=43.79 Aligned_cols=28 Identities=11% Similarity=-0.077 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHcC
Q 007695 365 YLALLRSFAQCGD-VRGAGQITNIMRIEE 392 (592)
Q Consensus 365 ~~~Ll~~~~~~g~-~~~A~~~~~~m~~~g 392 (592)
...++..+...++ ++.|..+++.+....
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~ 279 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD 279 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC
Confidence 3455555555655 467777888777664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=83.63 E-value=19 Score=40.69 Aligned_cols=273 Identities=11% Similarity=-0.010 Sum_probs=137.9
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHH
Q 007695 302 YSKAGNLDRAKEAFESLRSHGFQPD--KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI--E-----RSEEIYLALLRSF 372 (592)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~--~-----p~~~t~~~Ll~~~ 372 (592)
....|+.++++.+++.....+-..+ +..=..+.-+....|..+++..++...+...- . +....-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3445666666666655543110112 22333344455566666678877777655321 0 1111112222222
Q ss_pred HhCCC-HHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCC
Q 007695 373 AQCGD-VRGAGQITNIMRIEEFQPTLESCT--LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCT--ASMIAAYGKKNL 447 (592)
Q Consensus 373 ~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~--~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~--~~li~a~~~~g~ 447 (592)
+-.|. -+++...+..+.... ........ +|...|.-.|+.+....++..+.... +.... ..+--++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 22332 235555555555432 11111122 23334556677777788887776531 22222 223334456788
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007695 448 LDKALNLLLELEKDGFEPGPATYT--VLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 448 ~~~A~~l~~~m~~~g~~p~~~ty~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 525 (592)
.+.+..+.+.+.... .|....-. ++.-+|+..|+.....+++..+.+... .++.-...+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 888888888876632 22222222 334466778888877778888876422 13333333444445567766677777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHCCCCCCH-HHHHHHHhhhhh
Q 007695 526 GFLEAKKEQMGPDDFERIINGLLAGGFL-QDAQRVHGLMEAQGFAASE-RLKVALISSQTF 584 (592)
Q Consensus 526 ~~m~~~~~~~~~~~~~~li~a~~~~g~~-~~A~~l~~~m~~~g~~pd~-~~~~~l~~~~~~ 584 (592)
+.+.+.+ .|....-..+.-+....|.. .+|+.++..+.. .+|. +-..++++....
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMI 674 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHH
Confidence 6665543 23333223333444444443 577778887753 3455 444444444333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.95 E-value=10 Score=29.98 Aligned_cols=62 Identities=15% Similarity=0.046 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544 (592)
Q Consensus 482 ~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 544 (592)
+.-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.+..+- .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 344555666666666666777777777777777777777777776666542 22233455444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=82.75 E-value=69 Score=36.17 Aligned_cols=153 Identities=12% Similarity=0.183 Sum_probs=71.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHH-HH---HHHHHHHhCCC
Q 007695 302 YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEI-YL---ALLRSFAQCGD 377 (592)
Q Consensus 302 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~---~Ll~~~~~~g~ 377 (592)
+...|+-+....++..+.+.. .-+..-+..+.-++...|+.+.+..+++.+.... ++.+ |. ++.-+|+..|+
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCC
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCC
Confidence 344566666666666555431 1111122223333445677777777766666531 2222 22 23344566667
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLL-DKALNLLL 456 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~-~~A~~l~~ 456 (592)
.....+++..+.... ..++.....+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+++.++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 666666776666432 2223323333333444566555666665554432 23333222333333333332 45566666
Q ss_pred HHHH
Q 007695 457 ELEK 460 (592)
Q Consensus 457 ~m~~ 460 (592)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 6653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.51 E-value=6.3 Score=39.86 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 007695 366 LALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR-----LGHKPDDRC 434 (592)
Q Consensus 366 ~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~-----~g~~pd~~t 434 (592)
..++..+...|+++++...+..+.... +.+...|..+|.+|.+.|+..+|.+.|+.+.. .|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345555566666666666666665544 45566666666666666666666666665443 255555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 592 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.82 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.08 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.04 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.04 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.01 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.96 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.85 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.83 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.79 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.25 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.24 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.22 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.2 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.16 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.09 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.06 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.05 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.04 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.0 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.97 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.77 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.71 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.7 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.59 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.53 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.43 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.38 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.37 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.36 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.31 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.29 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.23 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.07 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.05 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.99 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.96 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.77 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.75 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.66 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.53 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.07 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.02 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.35 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.03 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.93 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.9 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.58 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.66 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.66 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.5 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 82.14 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.8e-16 Score=158.94 Aligned_cols=364 Identities=14% Similarity=0.018 Sum_probs=286.4
Q ss_pred cccCCchhHHHHHHhh--cCCC-HhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007695 202 EKEEDPSPLLAEWKEL--LQPS-RIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLEDAE 277 (592)
Q Consensus 202 ~~~g~~~~A~~~~~~~--~~p~-~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~ 277 (592)
++.|++++|+..++++ ..|+ ...|..+-..+ ..++.+.+...+...+... +.+..+|..+..+|.+.|++++|.
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~A~ 87 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhccccccc
Confidence 3789999999999887 3454 44455544444 5677888888888877653 345677888888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCC
Q 007695 278 RILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSG 357 (592)
Q Consensus 278 ~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g 357 (592)
..+......... +...+..........+....+........... .................+....+...+.......
T Consensus 88 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 88 EHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred cccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC
Confidence 999888876433 55555556666666666666666665555443 3445555666666777788888888888777654
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007695 358 IERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTAS 437 (592)
Q Consensus 358 ~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~ 437 (592)
+-+..++..+...+...|+++.|...+....... +-+..++..+...+...|++++|...|+.....+. .+...+..
T Consensus 166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 242 (388)
T d1w3ba_ 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGN 242 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred -cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHH
Confidence 3367888889999999999999999999988775 55688899999999999999999999999888654 36777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 007695 438 MIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGI 517 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~ 517 (592)
+...|.+.|++++|+..|++..+.. +-+..++..+..++...|++++|...++........ +...+..+...+...|+
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 320 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHHHCCC
Confidence 8899999999999999999988753 335778889999999999999999999998876544 78899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHH
Q 007695 518 EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVA 577 (592)
Q Consensus 518 ~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~ 577 (592)
+++|...|++..+.. +-++.+|..+..+|.+.|++++|++.|++..+ +.|+. ..+..
T Consensus 321 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~ 378 (388)
T d1w3ba_ 321 IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSN 378 (388)
T ss_dssp HHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 999999999987753 33677889999999999999999999999886 46765 43333
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=3.1e-16 Score=158.52 Aligned_cols=372 Identities=13% Similarity=-0.004 Sum_probs=294.1
Q ss_pred HHHHHhhcccccCCCCCCCCcchHHHHHHHHccc-ccCCchhHHHHHHhhc--CCC-HhhHHHHHHHH-HhhCHHHHHHH
Q 007695 169 AEKIHERGEMILPEEPKPITGKCKLITDKILSLE-KEEDPSPLLAEWKELL--QPS-RIDWINLLDRL-REQNTQLYFKV 243 (592)
Q Consensus 169 ~~~~~ea~~~f~~~~~~~~~~~~~~~~~~l~~~~-~~g~~~~A~~~~~~~~--~p~-~~t~~~lL~~~-~~~~~~~~~~~ 243 (592)
.|++.+|...+ .......|....+...+..++ +.|++++|+..|++++ .|+ ..+|..+...+ ..++.+.+...
T Consensus 12 ~G~~~~A~~~~--~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 12 AGDFEAAERHC--MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHH--HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccc
Confidence 56777777776 111112333333445555566 8999999999999873 454 55666666666 66788888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 007695 244 AELVLSEESFQTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF 323 (592)
Q Consensus 244 ~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 323 (592)
+....... +.+...+..........+....+............. ...............+....+...+.......
T Consensus 90 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (388)
T d1w3ba_ 90 YRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred cccccccc--cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccC-
Confidence 88876653 445555566666666777777777766666555333 45555666777778888888888888877653
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 324 QPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 324 ~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
+.+..++..+...+...|++++|...+.+...... -+..++..+...+...|++++|...+......+ +.+...+..+
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 243 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNL 243 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHH
Confidence 45677888899999999999999999999988642 367889999999999999999999999998876 6678889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 404 VEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 404 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
...|.+.|++++|...|++..+..+. +..++..+..+|...|++++|...++...... +.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 321 (388)
T d1w3ba_ 244 ACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCH
Confidence 99999999999999999999886443 57788889999999999999999999887653 56778888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~ 552 (592)
++|...+++..+.... +..++..+..+|...|++++|...|++..+.+ +-++..|..+..+|.+.|+
T Consensus 322 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 322 EEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999886544 67889999999999999999999999998763 3367889999999988775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=3.4e-11 Score=118.89 Aligned_cols=270 Identities=10% Similarity=-0.003 Sum_probs=175.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g 341 (592)
.....+.+.|++++|...|+++.+.... +..+|..+..+|...|++++|...|.+..+.. +-+...|..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3556678889999999999988886432 67788888888889999999999998887653 446778888888888888
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 342 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
++++|.+.+.+..... |+............. ..+.......+..+...+...+|...|.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 8888888888887643 221110000000000 0011111112223334455667777777
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 007695 422 YMIRLGH-KPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAP 500 (592)
Q Consensus 422 ~m~~~g~-~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 500 (592)
+.....+ .++...+..+...+...|++++|+..|+...... +-+...+..+..++...|++++|.+.+++..+....
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~- 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG- 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence 6665332 2355667777777778888888888888776542 234667777778888888888888888887775443
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHhCCCHHHH
Q 007695 501 PFKIQVSLCDMYARAGIEKKALQALGFLEAKK----------EQMGPDDFERIINGLLAGGFLQDA 556 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~----------~~~~~~~~~~li~a~~~~g~~~~A 556 (592)
+..++..+..+|.+.|++++|...|++..+.. .......|..+-.++...|+.+.+
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 56778888888888888888888887765521 111223455555566555555433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.6e-11 Score=121.39 Aligned_cols=242 Identities=12% Similarity=-0.013 Sum_probs=159.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 007695 298 LVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGD 377 (592)
Q Consensus 298 Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 377 (592)
....+.+.|++++|...|+++.+.. +-+..+|..+..+|...|++++|...|.+..+... -+...+..+..+|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 3445556666666666666666543 33455666666666666666666666666655432 245555556666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLES-CTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLL 456 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~-~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~ 456 (592)
+++|.+.+....... |+... +....... . ..+.......+..+...+.+.+|...|.
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGA-G-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhh-h-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 666666666555432 21100 00000000 0 0000111112233445566778888888
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 457 ELEKD-GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQM 535 (592)
Q Consensus 457 ~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~ 535 (592)
...+. .-.++..++..+...+...|++++|...+++....... +..+|..+...|...|++++|...|++..+.+ +-
T Consensus 161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 238 (323)
T d1fcha_ 161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PG 238 (323)
T ss_dssp HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hc
Confidence 77653 23456788888999999999999999999999887655 78899999999999999999999999988763 34
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 536 GPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 536 ~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
++.+|..+..+|.+.|++++|++.|++.++
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 678899999999999999999999998875
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=3.3e-08 Score=97.10 Aligned_cols=214 Identities=10% Similarity=0.037 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007695 258 RDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAG-NLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336 (592)
Q Consensus 258 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~t~~~li~a 336 (592)
..|+.+...+.+.+.+++|+++++++.+.+.. +...|+....++...| ++++|+..++...+.. +-+..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 45677777788888999999999999886433 6777888888888866 5899999999887664 5578899999999
Q ss_pred HHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----
Q 007695 337 YVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD---- 412 (592)
Q Consensus 337 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~---- 412 (592)
+.+.|++++|+..+.++++.... +...|..+...+.+.|++++|...++.+.+.+ +.+..+|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999886533 78889999999999999999999999998876 5677888887777776665
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 007695 413 --PDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFE-PGPATYTVLVDWL 477 (592)
Q Consensus 413 --~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~ 477 (592)
+++|...+.......+. +...|+.+...+...| .+++...+....+.... .+...+..++..|
T Consensus 200 ~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 56788888777775442 5666666655554433 46666666666543211 2344455555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.3e-07 Score=92.58 Aligned_cols=297 Identities=15% Similarity=0.063 Sum_probs=206.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHH
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPD----IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGF-QPD----KKVYN 331 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~ 331 (592)
......+...|++++|.+++++..+.....+ ...++.+..+|...|++++|...|++..+..- .++ ..++.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3345667889999999999999887632212 34677788899999999999999998764210 112 34566
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHH----CCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCCHHHH
Q 007695 332 SMIMAYVNAGQPKLGMSLVDMMIT----SGIER---SEEIYLALLRSFAQCGDVRGAGQITNIMRIEE----FQPTLESC 400 (592)
Q Consensus 332 ~li~a~~~~g~~~~A~~l~~~m~~----~g~~p---~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~ 400 (592)
.+...+...|++..+...+.+... .+... ....+..+...+...|+++.+...+....... ......++
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 777888899999999988887654 22111 12356667788899999999999998887643 22235666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCHHHHH
Q 007695 401 TLLVEAYGQAGDPDQARSNFDYMIRL--GHKPD----DRCTASMIAAYGKKNLLDKALNLLLELEKDGF---EPGPATYT 471 (592)
Q Consensus 401 ~~Li~~~~~~g~~~~A~~lf~~m~~~--g~~pd----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~---~p~~~ty~ 471 (592)
..+...+...++...+...+.+.... ..... ...+......+...|+++.|...+........ ......+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 77778888999999999888876552 11111 23455566678889999999999988655422 12245666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC----CCHH
Q 007695 472 VLVDWLGRLQLINEAEQLLGKISE----LGEAP-PFKIQVSLCDMYARAGIEKKALQALGFLEAK----KEQ----MGPD 538 (592)
Q Consensus 472 ~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~~ 538 (592)
.+..++...|++++|...++.... .+..| ....+..+...|...|++++|.+.+++.... +.. ....
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~ 335 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGE 335 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHH
Confidence 788899999999999999998763 23333 2457788889999999999999999876542 111 0112
Q ss_pred HHHHHHHHHHhCCCHHHHH
Q 007695 539 DFERIINGLLAGGFLQDAQ 557 (592)
Q Consensus 539 ~~~~li~a~~~~g~~~~A~ 557 (592)
.+..++..+...++.+++.
T Consensus 336 ~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 336 AMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHhcCCChHHH
Confidence 2344455555666555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=3.7e-08 Score=96.70 Aligned_cols=217 Identities=9% Similarity=0.032 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007695 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG-QPKLGMSLVDMMITSGIERSEEIYLALLR 370 (592)
Q Consensus 292 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 370 (592)
...|+.+...+.+.+.+++|+.+++++.+.. +-+..+|+....++...| ++++|+..++..++.... +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 4456777778888999999999999999874 556778888888888876 489999999999886543 7889999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---
Q 007695 371 SFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNL--- 447 (592)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~--- 447 (592)
.+.+.|++++|...++.+.+.. +.+..+|..+...+.+.|++++|+..|+++.+..+. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 9999999999999999999886 667999999999999999999999999999986553 66777766666655544
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHH
Q 007695 448 ---LDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEA-PPFKIQVSLCDMYAR 514 (592)
Q Consensus 448 ---~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~~~~~Li~~~~~ 514 (592)
+++|+..+....+.. +-+...+..+...+.. ...+++.+.++...+.... .+...+..++..|..
T Consensus 199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 678888888877643 2355666666554443 4457777777777654433 245566666666644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=1.3e-07 Score=92.49 Aligned_cols=270 Identities=13% Similarity=-0.040 Sum_probs=197.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHHHCCC-CCC----HHH
Q 007695 295 STVLVHMYSKAGNLDRAKEAFESLRSHGFQPD-----KKVYNSMIMAYVNAGQPKLGMSLVDMMITSGI-ERS----EEI 364 (592)
Q Consensus 295 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t 364 (592)
.......+...|++++|.++|++..+.. +.+ ..+++.+..+|...|++++|...|++...... .++ ..+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 3344567789999999999999988753 222 34677888999999999999999998865321 111 345
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHH
Q 007695 365 YLALLRSFAQCGDVRGAGQITNIMRIE----EFQP---TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH----KPDDR 433 (592)
Q Consensus 365 ~~~Ll~~~~~~g~~~~A~~~~~~m~~~----g~~~---~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~----~pd~~ 433 (592)
+..+...+...|++..+...+...... +... ....+..+...+...|+++.+...+........ .....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 667778889999999999988876542 1111 134566778889999999999999998877422 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CHHH
Q 007695 434 CTASMIAAYGKKNLLDKALNLLLELEKD--GFEPG----PATYTVLVDWLGRLQLINEAEQLLGKISELGEAP---PFKI 504 (592)
Q Consensus 434 t~~~li~a~~~~g~~~~A~~l~~~m~~~--g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~ 504 (592)
++......+...++...+...+...... ..... ...+..+...+...|+++.|...+.......... ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5666677788889999999888776542 11111 2345666777889999999999999876543322 2456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 505 QVSLCDMYARAGIEKKALQALGFLEA----KKEQM-GPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 505 ~~~Li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+..+...+...|++++|...++.... .+..| ....+..+...|...|++++|.+.+++...
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67788899999999999999988753 22222 234577788999999999999999988754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=5.2e-08 Score=95.22 Aligned_cols=186 Identities=6% Similarity=-0.078 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007695 378 VRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLE 457 (592)
Q Consensus 378 ~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~ 457 (592)
.++|..+|+...+...+.+...|...+..+.+.|+++.|..+|+.+...........|...+..+.+.|+.+.|..+|..
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 45667777776655445556677777777777788888888887777654433345677777777777778888888877
Q ss_pred HHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC
Q 007695 458 LEKDGFEPGPATYTVLVDW-LGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKE-QM 535 (592)
Q Consensus 458 m~~~g~~p~~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~-~~ 535 (592)
..+.+. .+...|...... +...|+.+.|..+|+.+.+.... +...|...++.+.+.|+++.|..+|++...... .|
T Consensus 160 al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 766532 223333333322 33457778888888887765333 677788888888888888888888888766532 22
Q ss_pred --CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 536 --GPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 536 --~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
....|...+.--...|+.+.+.++++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 133577777766777888888888887754
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=1.8e-07 Score=91.31 Aligned_cols=188 Identities=12% Similarity=0.034 Sum_probs=139.3
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 342 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
..++|..+|++.++...+-+...+...+..+.+.|+++.|..+|+.+..........+|...+..+.+.|+++.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34677788888776544556677778888888888888888888888765422335578888888888888999999998
Q ss_pred HHHHcCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C
Q 007695 422 YMIRLGHKPDDRCTASMI-AAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGE-A 499 (592)
Q Consensus 422 ~m~~~g~~pd~~t~~~li-~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~ 499 (592)
.+...++. +...|.... .-+...|+.+.|..+|+.+.+. .+.+...+...++.+.+.|+++.|..+|++...... .
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 88876543 233333222 2344568889999999888775 244577888888888899999999999999877542 3
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 500 P--PFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 500 p--~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
| ....|...+..-..+|+.+.+..+++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 3467888888878889999999998887663
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=1.1e-07 Score=89.62 Aligned_cols=95 Identities=12% Similarity=-0.017 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 329 VYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYG 408 (592)
Q Consensus 329 t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~ 408 (592)
+|..+..+|.+.|++++|+..|++.+.... -+..+|..+..+|.+.|++++|...|++..... +.+..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 344444444555555555555555444321 134445555555555555555555555554443 223444445555555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 007695 409 QAGDPDQARSNFDYMIR 425 (592)
Q Consensus 409 ~~g~~~~A~~lf~~m~~ 425 (592)
..|++++|...|+...+
T Consensus 117 ~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHh
Confidence 55555555555555444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.83 E-value=1.2e-08 Score=101.05 Aligned_cols=265 Identities=10% Similarity=-0.044 Sum_probs=166.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH----------HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 007695 271 NCLEDAERILKKMNENGIVPD-IVTSTVLVHM----------YSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN 339 (592)
Q Consensus 271 g~~~~A~~l~~~m~~~g~~pd-~~~~~~Li~~----------~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~ 339 (592)
+..++|++++++..+. .|+ ...|+..-.. +...|.+++|+.+|+...+.. +.+...|..+..++..
T Consensus 43 ~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 3447888888888775 344 3344332222 223345778888888877653 4567777777777766
Q ss_pred cCC--chHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 340 AGQ--PKLGMSLVDMMITSGIERSEEIYL-ALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQA 416 (592)
Q Consensus 340 ~g~--~~~A~~l~~~m~~~g~~p~~~t~~-~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A 416 (592)
.++ +++|...+..+.+... .+...+. .....+...+.++.|...++...... +-+..+|+.+...+.+.|++++|
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred hccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHH
Confidence 654 6788888888877543 3455544 44466667788888888888887775 56778888888888888888777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 417 RSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 417 ~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
...+...... .|+. ..+...+...+..+++...+....... +++...+..+...+...++..+|...+.+..+.
T Consensus 198 ~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 198 GPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6555443331 0111 112233444555666666666665542 233344455555666677777777777777655
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 497 GEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLL 548 (592)
Q Consensus 497 g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~ 548 (592)
... +..++..+..+|...|+.++|...++.+.+.+ +.+..-|..|...+.
T Consensus 272 ~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 272 NKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFL 321 (334)
T ss_dssp CHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHH
T ss_pred Cch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHHh
Confidence 433 45667777777888888888888888777652 223444555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=1.7e-07 Score=88.35 Aligned_cols=129 Identities=11% Similarity=-0.036 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007695 294 TSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFA 373 (592)
Q Consensus 294 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~ 373 (592)
+|..+..+|.+.|++++|...|++..+.. +-+..+|+.+..+|.+.|++++|+..|++..+.... +..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 45556667777777777777777766543 445667777777777777777777777777664322 4556667777777
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 374 QCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
..|++++|...++...+.. +.+......+...+.+.+..+.+..+......
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 7777777777777776654 34444444444555555555555555555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.69 E-value=5.7e-08 Score=95.91 Aligned_cols=271 Identities=9% Similarity=-0.064 Sum_probs=191.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH----------HHcCCchHHHHHHHHHHHCCCCCCHHH
Q 007695 296 TVLVHMYSKAGNLDRAKEAFESLRSHGFQPD-KKVYNSMIMAY----------VNAGQPKLGMSLVDMMITSGIERSEEI 364 (592)
Q Consensus 296 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~li~a~----------~~~g~~~~A~~l~~~m~~~g~~p~~~t 364 (592)
..++.........++|++++++..+. .|+ ...|+..-..+ ...|++++|+.+++....... -+...
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~ 109 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGT 109 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHH
Confidence 33443333344458999999999875 454 44565433333 234457889999999988653 37777
Q ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 007695 365 YLALLRSFAQCG--DVRGAGQITNIMRIEEFQPTLESCT-LLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAA 441 (592)
Q Consensus 365 ~~~Ll~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~-~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a 441 (592)
+..+..++...+ ++++|...+..+.... +.+...+. .....+...+.++.|+..++......+. +...|+.+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~ 187 (334)
T d1dcea1 110 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHH
T ss_pred HHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 777777777765 4889999999998875 55666655 4557777889999999999999886554 78888888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 442 YGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKA 521 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A 521 (592)
+.+.|++++|...+....+. .|+ ...+...+...+..+++...+......... +...+..+...+...|+..+|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHH
Confidence 99999888776555433221 111 122334455667777888888877765433 455666777888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHh
Q 007695 522 LQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE-RLKVALIS 580 (592)
Q Consensus 522 ~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~l~~ 580 (592)
...+.+....+ +-+...|..+..+|...|++++|++.|++..+. .|+. .++..+..
T Consensus 262 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~ 318 (334)
T d1dcea1 262 CKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRS 318 (334)
T ss_dssp HHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHH
T ss_pred HHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHH
Confidence 99998876542 224556788889999999999999999999874 7765 45444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3.8e-05 Score=68.68 Aligned_cols=127 Identities=11% Similarity=-0.021 Sum_probs=77.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 441 AYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKK 520 (592)
Q Consensus 441 a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~ 520 (592)
.+...|+++.|++.|.++ ..|+..++..+..++...|++++|...|++.++.... +...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence 445566666666666543 2455566666666666666666666666666665544 56666666666777777777
Q ss_pred HHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 007695 521 ALQALGFLEAKKEQ--------------M-GPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASE 572 (592)
Q Consensus 521 A~~~~~~m~~~~~~--------------~-~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~ 572 (592)
|...|++....... + ...++..+..++.+.|++++|.+.++........|+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~ 155 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 155 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch
Confidence 76666665432110 0 0234555666777777777777777777665555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=4.2e-05 Score=68.39 Aligned_cols=121 Identities=12% Similarity=0.057 Sum_probs=57.0
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 007695 303 SKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAG 382 (592)
Q Consensus 303 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~ 382 (592)
...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++.++.+. -+...|..+..+|.+.|++++|.
T Consensus 16 ~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 16 ADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHHHH
Confidence 34444444444444321 33444444444444444444444444444444321 13444444444444444444444
Q ss_pred HHHHHHHHc------------CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 007695 383 QITNIMRIE------------EFQ--P-TLESCTLLVEAYGQAGDPDQARSNFDYMIRLGH 428 (592)
Q Consensus 383 ~~~~~m~~~------------g~~--~-~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~ 428 (592)
..|+..... |.. . ...++..+..+|.+.|++++|.+.|.......+
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 444443321 000 0 124455566677777777777777776665433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.22 E-value=3.1e-05 Score=74.11 Aligned_cols=131 Identities=12% Similarity=-0.022 Sum_probs=62.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNEN----GIVP-DIVTSTVLVHMYSKAGNLDRAKEAFESLRSH----GF-QPDKKV 329 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~t 329 (592)
|......|...+++++|.+.|.+.... +-.+ -..+|+.+..+|.+.|++++|...|++.... |- .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 455556666777777777777665432 1111 1235666666666666666666666654321 10 001223
Q ss_pred HHHHHHHHHH-cCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 330 YNSMIMAYVN-AGQPKLGMSLVDMMITS----GIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRI 390 (592)
Q Consensus 330 ~~~li~a~~~-~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~ 390 (592)
+..+...|.. .|++++|++.+.+..+. +..+ ...++..+...|...|++++|...|++...
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 3344444432 35555555555544321 1000 012334444444455555555555544443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.21 E-value=6.2e-05 Score=71.90 Aligned_cols=127 Identities=13% Similarity=0.017 Sum_probs=57.0
Q ss_pred HHHHHHcCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---C--CCHHHHHHH
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITS----GIER-SEEIYLALLRSFAQCGDVRGAGQITNIMRIEEF---Q--PTLESCTLL 403 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~---~--~~~~~~~~L 403 (592)
...|...+++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|...++....... . ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 34555666666666666655442 1111 123455555666666666666655554432200 0 012333334
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007695 404 VEAYGQ-AGDPDQARSNFDYMIRL----GHKP-DDRCTASMIAAYGKKNLLDKALNLLLELEK 460 (592)
Q Consensus 404 i~~~~~-~g~~~~A~~lf~~m~~~----g~~p-d~~t~~~li~a~~~~g~~~~A~~l~~~m~~ 460 (592)
...|.. .|++++|...|.+.... +-.+ -..++..+...|...|++++|+..|++...
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 444432 35555555555544321 0000 012234444445555555555555554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=0.002 Score=59.71 Aligned_cols=158 Identities=14% Similarity=0.098 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 007695 256 NVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSK----AGNLDRAKEAFESLRSHGFQPDKKVYN 331 (592)
Q Consensus 256 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~ 331 (592)
|+..+..|...+.+.+++.+|.+.|++..+.| |...+..|...|.. ..+...|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34556667777777888888888888887765 55666666666665 557777888877777654 444444
Q ss_pred HHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007695 332 SMIMAYVN----AGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEEFQPTLESCTLL 403 (592)
Q Consensus 332 ~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~L 403 (592)
.+...+.. ..+.+.|...++.....|. ......+...+.. ......+...+...... .+...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence 44444433 3456677777777766652 2233333333332 23455555555554443 345555556
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHH
Q 007695 404 VEAYGQ----AGDPDQARSNFDYMIR 425 (592)
Q Consensus 404 i~~~~~----~g~~~~A~~lf~~m~~ 425 (592)
...|.. ..+...+...++...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~ 174 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACD 174 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccc
Confidence 555554 2334444444444444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.16 E-value=0.0028 Score=58.61 Aligned_cols=95 Identities=13% Similarity=-0.057 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007695 292 IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN----AGQPKLGMSLVDMMITSGIERSEEIYLA 367 (592)
Q Consensus 292 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 367 (592)
+..+..|...+.+.+++++|.+.|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455556666666777777777777776654 55555556666654 445666666666665554 3333333
Q ss_pred HHHHHHh----CCCHHHHHHHHHHHHHcC
Q 007695 368 LLRSFAQ----CGDVRGAGQITNIMRIEE 392 (592)
Q Consensus 368 Ll~~~~~----~g~~~~A~~~~~~m~~~g 392 (592)
+...+.. ..+.+.|...++.....|
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cccccccccccchhhHHHHHHHhhhhhhh
Confidence 3333332 334555666666555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=6.3e-05 Score=61.21 Aligned_cols=92 Identities=12% Similarity=-0.039 Sum_probs=59.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 007695 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQ 342 (592)
Q Consensus 263 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~ 342 (592)
-...+.+.|++++|+..|++..+... -+...|..+..+|.+.|++++|...|....+.. +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 34456666777777777777666532 256666666677777777777777777666554 4566666666667777777
Q ss_pred chHHHHHHHHHHHC
Q 007695 343 PKLGMSLVDMMITS 356 (592)
Q Consensus 343 ~~~A~~l~~~m~~~ 356 (592)
+++|+..|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777666654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.06 E-value=0.0019 Score=62.27 Aligned_cols=265 Identities=12% Similarity=0.106 Sum_probs=153.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007695 254 QTNVRDYSKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSM 333 (592)
Q Consensus 254 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 333 (592)
.||...-..+.+.|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+.. +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 45655566778888899999999999986543 6678888889999999888776543 67789889
Q ss_pred HHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 007695 334 IMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDP 413 (592)
Q Consensus 334 i~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~ 413 (592)
..++.+......+ .+.......+......++..|-..|.+++...++....... ..+...++-++..|++.+ .
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-h
Confidence 9888887665443 23333445567777888999999999999999888776443 567778888988888864 3
Q ss_pred HHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 007695 414 DQARSNFDYMIRLGHKPDDR----------CTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLI 483 (592)
Q Consensus 414 ~~A~~lf~~m~~~g~~pd~~----------t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 483 (592)
++..+.+... +...|.. .|.-++-.|.+.|+++.|..+.- ++ .++..-....+..+.+..+.
T Consensus 149 ~kl~e~l~~~---s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~ 220 (336)
T d1b89a_ 149 QKMREHLELF---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANV 220 (336)
T ss_dssp HHHHHHHHHH---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSST
T ss_pred HHHHHHHHhc---cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCCh
Confidence 3433333322 1111211 12334444444455544443322 11 22333334455556666666
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHH-------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 007695 484 NEAEQLLGKISELGEAPPFKIQVS-------------LCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAG 550 (592)
Q Consensus 484 ~~A~~l~~~m~~~g~~p~~~~~~~-------------Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~ 550 (592)
+...++.....+. .| ...+. ++..+.+.+++......++.....+ +....+++...|...
T Consensus 221 e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~ 293 (336)
T d1b89a_ 221 ELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITE 293 (336)
T ss_dssp HHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCc
Confidence 6666655554442 12 12233 3444455555555555555554433 456788899999999
Q ss_pred CCHHH
Q 007695 551 GFLQD 555 (592)
Q Consensus 551 g~~~~ 555 (592)
++++.
T Consensus 294 ~d~~~ 298 (336)
T d1b89a_ 294 EDYQA 298 (336)
T ss_dssp TCHHH
T ss_pred chhHH
Confidence 98654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=9.1e-05 Score=63.74 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=42.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 007695 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379 (592)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 379 (592)
+.|.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++.++.. +-+..+|..+..+|...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 34444555555555555444432 3344444444445555555555555555444432 113344444444455555555
Q ss_pred HHHHHHHHHHHc
Q 007695 380 GAGQITNIMRIE 391 (592)
Q Consensus 380 ~A~~~~~~m~~~ 391 (592)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 555544444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.04 E-value=4.3e-05 Score=68.20 Aligned_cols=99 Identities=12% Similarity=-0.084 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007695 430 PDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLC 509 (592)
Q Consensus 430 pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li 509 (592)
|+...+......|.+.|++++|+..|.+..+.. +-+...|..+..+|.+.|++++|...++...+.... +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 677777778888999999999999999887753 446788888999999999999999999999876544 678889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 007695 510 DMYARAGIEKKALQALGFLEA 530 (592)
Q Consensus 510 ~~~~~~g~~~~A~~~~~~m~~ 530 (592)
.+|...|++++|...|++...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=0.00014 Score=62.43 Aligned_cols=92 Identities=8% Similarity=-0.021 Sum_probs=58.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 007695 333 MIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGD 412 (592)
Q Consensus 333 li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~ 412 (592)
..+.|.+.|++++|+..|.+.++.. +-+...|..+..+|...|++++|...|+...+.. +-+..+|..+..+|...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3445566666666666666666654 2256666666666666666666666666666554 4455666666666666666
Q ss_pred HHHHHHHHHHHHHc
Q 007695 413 PDQARSNFDYMIRL 426 (592)
Q Consensus 413 ~~~A~~lf~~m~~~ 426 (592)
+++|...|++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 66666666666654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=0.00012 Score=59.41 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=41.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 007695 300 HMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVR 379 (592)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 379 (592)
+.+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|+..+...+..+ +.+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 34444455555555555544432 3344444445555555555555555555444432 224444444444444445554
Q ss_pred HHHHHHHHHHH
Q 007695 380 GAGQITNIMRI 390 (592)
Q Consensus 380 ~A~~~~~~m~~ 390 (592)
+|...|+...+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.97 E-value=6.7e-05 Score=66.85 Aligned_cols=98 Identities=9% Similarity=-0.047 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 325 PDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLV 404 (592)
Q Consensus 325 pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li 404 (592)
|+...+......|.+.|++++|+..|.+.+... +-+...|..+..+|.+.|++++|...|+...... +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 344444444445555555555555555444432 2244444444445555555555555554444332 22344444444
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 007695 405 EAYGQAGDPDQARSNFDYMI 424 (592)
Q Consensus 405 ~~~~~~g~~~~A~~lf~~m~ 424 (592)
.+|.+.|++++|...|++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 44555555555544444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.77 E-value=0.00013 Score=58.82 Aligned_cols=89 Identities=11% Similarity=-0.117 Sum_probs=60.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 007695 473 LVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGF 552 (592)
Q Consensus 473 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~ 552 (592)
+...+.+.|++++|...+++....... +...|..+..++.+.|++++|...|++..+.+ +.++..|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 344566677777777777777665544 56777777777777777777777777766652 3356667777777777777
Q ss_pred HHHHHHHHHHH
Q 007695 553 LQDAQRVHGLM 563 (592)
Q Consensus 553 ~~~A~~l~~~m 563 (592)
+++|++.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777664
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00013 Score=59.76 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=15.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007695 299 VHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYV 338 (592)
Q Consensus 299 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~ 338 (592)
++.+...+++++|.+.|++....+ +.+..++..+..++.
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~ 44 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLV 44 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 333344444444444444444332 333344444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.70 E-value=0.00021 Score=57.46 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007695 362 EEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFD 421 (592)
Q Consensus 362 ~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~ 421 (592)
..+|..+..++.+.|++++|...|+...+.. +.+..++..+...|...|++++|.+.|+
T Consensus 50 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A~~~l~ 108 (112)
T d1hxia_ 50 EEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLR 108 (112)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333444444444433333332 2233333334444444444444443333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.00018 Score=58.92 Aligned_cols=24 Identities=8% Similarity=0.032 Sum_probs=9.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 402 LLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 402 ~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.+..+|.+.|++++|...|+++.+
T Consensus 77 ~Lg~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 77 YLAVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333333333333333333333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.0016 Score=56.25 Aligned_cols=62 Identities=18% Similarity=0.060 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
+|+.+..+|.+.|++++|...++...... +.+..+|..+..+|...|++++|...|++....
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45556666777777777777777776664 446667777777777777777777777776664
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.002 Score=55.68 Aligned_cols=62 Identities=15% Similarity=-0.122 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 469 TYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 469 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
+|+.+..+|.+.|++++|...++..+..... ++..+..+..+|...|++++|...|+...+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444555555555555555555555554333 5555555555555666666666665555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=0.0017 Score=56.81 Aligned_cols=126 Identities=12% Similarity=0.045 Sum_probs=87.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 007695 438 MIAAYGKKNLLDKALNLLLELEKD--GFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARA 515 (592)
Q Consensus 438 li~a~~~~g~~~~A~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~ 515 (592)
........|++++|...|.+.... |-.... + ..+.+ +...-..+... ....+..+...+.+.
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~---------~-~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD---------L-RDFQF--VEPFATALVED----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG---------G-TTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc---------C-cchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 334667889999999999888764 211000 0 00010 01111111111 245677889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHHh
Q 007695 516 GIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLME-----AQGFAASERLKVALIS 580 (592)
Q Consensus 516 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~-----~~g~~pd~~~~~~l~~ 580 (592)
|++++|...++.+... .+.+...|..++.+|...|+..+|++.|+++. +.|+.|+..+..+.-.
T Consensus 81 g~~~~Al~~~~~al~~-~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~ 149 (179)
T d2ff4a2 81 GRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 149 (179)
T ss_dssp TCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 9999999999999887 45688899999999999999999999999875 4699999855444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.38 E-value=0.0047 Score=52.11 Aligned_cols=62 Identities=16% Similarity=0.039 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
+|+.+..+|.+.|++++|...+....... +.+..+|..+..+|...|++++|...|+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55566666677777777777777666664 556667777777777777777777777766664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.0018 Score=53.07 Aligned_cols=90 Identities=16% Similarity=0.138 Sum_probs=41.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC-----HHHHHHHHHH
Q 007695 368 LLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHK-PD-----DRCTASMIAA 441 (592)
Q Consensus 368 Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~-pd-----~~t~~~li~a 441 (592)
+...|.+.|++++|...|.+..+.+ +.+..++..+..+|.+.|++++|...++++...... +. ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555443 334455555555555555555555555554431110 00 1233344444
Q ss_pred HHhcCCHHHHHHHHHHH
Q 007695 442 YGKKNLLDKALNLLLEL 458 (592)
Q Consensus 442 ~~~~g~~~~A~~l~~~m 458 (592)
+...+++++|+..|...
T Consensus 89 ~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 44455555555555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.36 E-value=0.069 Score=50.93 Aligned_cols=275 Identities=9% Similarity=0.078 Sum_probs=143.6
Q ss_pred HHHccc-ccCCchhHHHHHHhhcCCCHhhHHHHHHHH-HhhCHHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 007695 197 KILSLE-KEEDPSPLLAEWKELLQPSRIDWINLLDRL-REQNTQLYFKVAELVLSEESFQTNVRDYSKLIDAHAKENCLE 274 (592)
Q Consensus 197 ~l~~~~-~~g~~~~A~~~~~~~~~p~~~t~~~lL~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~Li~~~~~~g~~~ 274 (592)
.+...+ +.|.++.|..++..+.+ |..++..+ ..++...+.+.+... -+..+|..+...|.+.....
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp ----------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHHHHHHhCcHHH
Confidence 356666 89999999999987654 44445554 344456666655432 35567778888888777665
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007695 275 DAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMI 354 (592)
Q Consensus 275 ~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~ 354 (592)
.| .+.......+......++..|-..|.+++...+++...... ..+...++-++..|++.+ .++..+.+...
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~kl~e~l~~~- 158 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELF- 158 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HHHHHHHHHHH-
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hHHHHHHHHhc-
Confidence 43 22233334466666778888888888888888888765432 567777888888887754 34444444332
Q ss_pred HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 355 TSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE--------FQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 355 ~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g--------~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
....| ...+++.|-..+-+.++.-++..+.... .+++..-....+..+.+..+.+...++.....+.
T Consensus 159 --s~~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~ 233 (336)
T d1b89a_ 159 --WSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 233 (336)
T ss_dssp --STTSC---HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred --cccCC---HHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc
Confidence 11111 1223444444444444443333322100 0112112222333444444444333333333221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 007695 427 GHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQV 506 (592)
Q Consensus 427 g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~ 506 (592)
.|+ ..+.++......-+... ++..+.+.+++.....++......+ +..+.+
T Consensus 234 --~p~--~i~~lL~~v~~~~d~~r----------------------~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~ 284 (336)
T d1b89a_ 234 --KPL--LLNDLLMVLSPRLDHTR----------------------AVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNE 284 (336)
T ss_dssp --CGG--GHHHHHHHHGGGCCHHH----------------------HHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHH
T ss_pred --CHH--HHHHHHHHhccCCCHHH----------------------HHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHH
Confidence 121 12223333333333322 3444445556666666776665544 457899
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 007695 507 SLCDMYARAGIEKKALQAL 525 (592)
Q Consensus 507 ~Li~~~~~~g~~~~A~~~~ 525 (592)
+|...|...++++.-.+..
T Consensus 285 al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 285 SLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCcchhHHHHHHH
Confidence 9999999999976644443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.31 E-value=0.0051 Score=51.92 Aligned_cols=108 Identities=9% Similarity=-0.027 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007695 260 YSKLIDAHAKENCLEDAERILKKMNENGIV----PDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIM 335 (592)
Q Consensus 260 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~----pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~ 335 (592)
+..-...+.+.|++.+|...|.+....-.. ++.... .... .....+|+.+..
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~--------------------~~~~----~~~~~~~~Nla~ 75 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--------------------DKKK----NIEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--------------------HHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH--------------------Hhhh----hHHHHHHhhHHH
Confidence 344455677888888888888887653110 111100 0000 001234555555
Q ss_pred HHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 007695 336 AYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEE 392 (592)
Q Consensus 336 a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g 392 (592)
+|.+.|++++|++.+...++.+ +.+..+|..+..++...|++++|...|....+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 5666666666666666655543 2255566666666666666666666666655553
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.002 Score=52.69 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=23.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 263 LIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESL 318 (592)
Q Consensus 263 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m 318 (592)
+...+.+.|++++|+..|.+..+.+. .+..+|..+..+|.+.|++++|.+.|+++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence 33344444444444444444444321 13344444444444444444444444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.25 E-value=0.0023 Score=55.02 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
.|..+..+|.+.|++++|...+....+.. +.+..+|..+..+|...|++++|...|+...+
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 33344444444455555555444444433 33444444455555555555555555554444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.23 E-value=0.002 Score=55.42 Aligned_cols=128 Identities=7% Similarity=-0.086 Sum_probs=70.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 007695 261 SKLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNA 340 (592)
Q Consensus 261 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~ 340 (592)
......+.+.|+++.|++.|.+..+. ............... +. +.+...|+.+..+|.+.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~----~~----~~~~~~~~nla~~~~~~ 90 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAK----LQ----PVALSCVLNIGACKLKM 90 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGG----GH----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHH----hC----hhhHHHHHHHHHHHHhh
Confidence 34555677888888888888776541 000000000000000 00 12344556666666677
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 007695 341 GQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQA 410 (592)
Q Consensus 341 g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~ 410 (592)
|++++|+..+.+.++.. +-+..+|..+..+|.+.|++++|...|....+.. +.+......+..+..+.
T Consensus 91 ~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 91 SDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKI 158 (169)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 77777777777666653 2356666667777777777777777777666654 34555555555444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.12 E-value=0.021 Score=48.64 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 364 IYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRL 426 (592)
Q Consensus 364 t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~ 426 (592)
+|+.+..+|.+.|++++|...++...... +.+..+|..+..+|...|++++|...|......
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34455566666666666666666666654 455666666666666666666666666666653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.07 E-value=0.013 Score=50.16 Aligned_cols=81 Identities=12% Similarity=-0.096 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 007695 468 ATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGL 547 (592)
Q Consensus 468 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~ 547 (592)
.+|+.+..+|.+.|++++|...++........ +...|..+..+|...|++++|...|+.+...+ +.++..+..+-...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556667777888888888888887776544 77777788888888888888888888877753 33555555444444
Q ss_pred HhC
Q 007695 548 LAG 550 (592)
Q Consensus 548 ~~~ 550 (592)
...
T Consensus 143 ~~~ 145 (168)
T d1kt1a1 143 KKA 145 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.05 E-value=0.0047 Score=53.74 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 007695 262 KLIDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAG 341 (592)
Q Consensus 262 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g 341 (592)
.........|++++|.+.|.+....- +... +........+...-..+.. .....+..+..++.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 34456777888888888888887641 1110 0000010111111111211 12346667777777788
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 007695 342 QPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRI-----EEFQPTLES 399 (592)
Q Consensus 342 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 399 (592)
++++|+..+++++... +-+...|..++.+|.+.|+..+|.+.|+++.. .|+.|...+
T Consensus 82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 8888888888777754 33777788888888888888888877777643 477777654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.0003 Score=72.56 Aligned_cols=210 Identities=10% Similarity=-0.040 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007695 259 DYSKLIDAHAKENCLEDAERILKKMNENGIVPDI-VTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAY 337 (592)
Q Consensus 259 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~ 337 (592)
.+..+..++...+++++| |+++... .|+. ..++.. ..+.+ ..+..+.+.++...+..-.++..-....+..+
T Consensus 22 a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e-~~Lw~-~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~ 94 (497)
T d1ya0a1 22 SKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE-QDLWN-HAFKNQITTLQGQAKNRANPNRSEVQANLSLF 94 (497)
T ss_dssp SSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH-HHHHH-HHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHH
T ss_pred HHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH-HHHHH-HHHHHHHHHHHHhcccccCccHHHHHHHHHHH
Confidence 456667777777877765 6666553 2221 112111 11111 12455667777766543333333222222222
Q ss_pred --HHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 007695 338 --VNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQ 415 (592)
Q Consensus 338 --~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~ 415 (592)
...+.++.++..+....+.. .++...+..+...+.+.|+.+.|...+....... ...++..+...+...|++++
T Consensus 95 l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~ 170 (497)
T d1ya0a1 95 LEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQ 170 (497)
T ss_dssp HHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHH
Confidence 22344555554444433322 2345667777788888888888887777665432 13567778888889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 007695 416 ARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQ 481 (592)
Q Consensus 416 A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 481 (592)
|...|.+.....+. +..+|+.+...|...|+..+|+..|.+..... .|-..++..|...+.+..
T Consensus 171 A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 171 AESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 99999988885443 56788888888999999999998888887654 566778888877765543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.96 E-value=0.00031 Score=72.51 Aligned_cols=227 Identities=8% Similarity=-0.084 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCchHHHHHHHH
Q 007695 275 DAERILKKMNENGIVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDK-KVYNSMIMAYVNAGQPKLGMSLVDM 352 (592)
Q Consensus 275 ~A~~l~~~m~~~g~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~li~a~~~~g~~~~A~~l~~~ 352 (592)
+|.+.|++..+. +|| ...+..+..+|...+++++| |+++... .|+. ..++..- .+ -...+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~-~L-w~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQ-DL-WNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHH-HH-HHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHH-HH-HHHHHHHHHHHHHH
Confidence 678888888763 444 44566777888888888766 7776643 2321 1122111 11 11224567777777
Q ss_pred HHHCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 007695 353 MITSGIERSEEIYLALLRS--FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKP 430 (592)
Q Consensus 353 m~~~g~~p~~~t~~~Ll~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~p 430 (592)
..+....++..-....+.. +...+.++.+...+....+.. +++...+..+...+.+.|+.+.|...+.......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 7665434443332222222 223344555555554443332 3456778888899999999999998887765521
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007695 431 DDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCD 510 (592)
Q Consensus 431 d~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~ 510 (592)
...++..+...+...|++++|...|.+..+.. +-+...|+.|...+...|+..+|...|.+...... |...++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHH
Confidence 23567778889999999999999999988743 23458999999999999999999999999987654 57888888888
Q ss_pred HHHHcC
Q 007695 511 MYARAG 516 (592)
Q Consensus 511 ~~~~~g 516 (592)
.|.+..
T Consensus 229 ~~~~~~ 234 (497)
T d1ya0a1 229 ALSKAL 234 (497)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 876544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.77 E-value=0.0032 Score=52.71 Aligned_cols=73 Identities=11% Similarity=-0.016 Sum_probs=47.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007695 267 HAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKA----------GNLDRAKEAFESLRSHGFQPDKKVYNSMIMA 336 (592)
Q Consensus 267 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~----------g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a 336 (592)
|-+.+.+++|.+.|+...+.. +.+..++..+..+|... +.+++|...|++..+.. +.+..+|+.+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 345566888888888887764 33677777777776643 34466777777776653 4456677777777
Q ss_pred HHHcC
Q 007695 337 YVNAG 341 (592)
Q Consensus 337 ~~~~g 341 (592)
|...|
T Consensus 85 y~~~g 89 (145)
T d1zu2a1 85 YTSFA 89 (145)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 65544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.75 E-value=0.0011 Score=61.96 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=35.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 268 AKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 268 ~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
.+.|++++|+..|++..+.... |...+..+...|+..|++++|...|+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4556777777777776665332 6666777777777777777777777766654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.66 E-value=0.0017 Score=60.60 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=27.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 007695 444 KKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISEL 496 (592)
Q Consensus 444 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 496 (592)
+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455555555555555532 234455555555555555555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.53 E-value=0.0072 Score=50.45 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 007695 414 DQARSNFDYMIRLGHKPDDRCTASMIAAYG 443 (592)
Q Consensus 414 ~~A~~lf~~m~~~g~~pd~~t~~~li~a~~ 443 (592)
++|+..|++..+..+. +..+|..+..+|.
T Consensus 58 ~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 58 QEAITKFEEALLIDPK-KDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcch-hhHHHhhHHHHHH
Confidence 4445555544443221 3334444444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.07 E-value=0.043 Score=45.93 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=49.8
Q ss_pred HHHHH--HHHHHHcCCHHHHHHHHHHHHHCCCC-CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 007695 259 DYSKL--IDAHAKENCLEDAERILKKMNENGIV-PD----------IVTSTVLVHMYSKAGNLDRAKEAFESLRSH---- 321 (592)
Q Consensus 259 ~y~~L--i~~~~~~g~~~~A~~l~~~m~~~g~~-pd----------~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---- 321 (592)
+|..+ ...+.+.|++++|++.|++..+.... |+ ..+|+.+..+|.+.|++++|...+++..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 34455667777777777776542100 11 345666666666666666666666655421
Q ss_pred -CCCCC-----HHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 007695 322 -GFQPD-----KKVYNSMIMAYVNAGQPKLGMSLVDMMI 354 (592)
Q Consensus 322 -g~~pd-----~~t~~~li~a~~~~g~~~~A~~l~~~m~ 354 (592)
...++ ..+|+.+..+|...|++++|+..|++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 1134444555555555555555555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.02 E-value=0.064 Score=44.75 Aligned_cols=89 Identities=12% Similarity=-0.080 Sum_probs=53.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC-C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC----
Q 007695 477 LGRLQLINEAEQLLGKISELGEA-P----------PFKIQVSLCDMYARAGIEKKALQALGFLEAK-----KEQMG---- 536 (592)
Q Consensus 477 ~~~~g~~~~A~~l~~~m~~~g~~-p----------~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~---- 536 (592)
+.+.|++++|...|++.++.... | ....|+.+..+|...|++++|...+++.... ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34445555555555555432110 1 1345667777777777777777777665431 11111
Q ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 537 -PDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 537 -~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
...|+.+..+|...|++++|++.|++..+
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12456677888888888888888887653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.046 Score=41.49 Aligned_cols=65 Identities=17% Similarity=0.047 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 007695 257 VRDYSKLIDAHAKENCLEDAERILKKMNENG-----IVPD-IVTSTVLVHMYSKAGNLDRAKEAFESLRSH 321 (592)
Q Consensus 257 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd-~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 321 (592)
...+-.+...+.+.|+++.|...|++..+.. ..++ ..+++.|..+|.+.|++++|...|+++++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3344456666667777777777666654321 1111 445666666666667777776666666654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.03 E-value=0.33 Score=38.88 Aligned_cols=110 Identities=11% Similarity=-0.081 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCchHHH
Q 007695 272 CLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVN----AGQPKLGM 347 (592)
Q Consensus 272 ~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~----~g~~~~A~ 347 (592)
++++|.+.|.+..+.|.. ..+..|.. ....+.++|...|++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 455666666666555421 22222221 22344555555555555544 33444444444433 22344555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHcC
Q 007695 348 SLVDMMITSGIERSEEIYLALLRSFAQ----CGDVRGAGQITNIMRIEE 392 (592)
Q Consensus 348 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~~~~~~m~~~g 392 (592)
++|++..+.| ++..+..|...|.. ..+..+|..+|+...+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555554444 33333334333333 224444444444444433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.1 Score=39.32 Aligned_cols=60 Identities=15% Similarity=-0.043 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007695 366 LALLRSFAQCGDVRGAGQITNIMRIEE-----FQPT-LESCTLLVEAYGQAGDPDQARSNFDYMIR 425 (592)
Q Consensus 366 ~~Ll~~~~~~g~~~~A~~~~~~m~~~g-----~~~~-~~~~~~Li~~~~~~g~~~~A~~lf~~m~~ 425 (592)
-.+...+.+.|+++.|...|++..+.. ..++ ..+++.+..+|.+.|++++|+..+++..+
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 344444445555555554444443220 0111 33444555555555555555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.90 E-value=0.31 Score=39.08 Aligned_cols=109 Identities=15% Similarity=0.043 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHH
Q 007695 307 NLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQPKLGMSLVDMMITSGIERSEEIYLALLRSFAQ----CGDVRGAG 382 (592)
Q Consensus 307 ~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~----~g~~~~A~ 382 (592)
|+++|.+.|.+..+.| +......|.. ....+.++|+.++++..+.| +...+..|...|.. ..+.+.|.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 5566777777766655 2222222221 22345556666666665554 34444444444443 23455555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Q 007695 383 QITNIMRIEEFQPTLESCTLLVEAYGQ----AGDPDQARSNFDYMIRL 426 (592)
Q Consensus 383 ~~~~~m~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~lf~~m~~~ 426 (592)
++|+...+.| +...+..|...|.. ..+.++|...|+...+.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 5555555544 33344444444443 23455555555554443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.58 E-value=1.8 Score=33.89 Aligned_cols=140 Identities=16% Similarity=0.017 Sum_probs=79.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007695 372 FAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKA 451 (592)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A 451 (592)
+.-.|.+++..+++.+.... .+..-||.+|.-....-+-+....+++..-.. .|. ...++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHH
Confidence 34467777777777776654 35666666666666666666655555555331 221 112222222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 007695 452 LNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAK 531 (592)
Q Consensus 452 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 531 (592)
...+-.+ ..+...+...++.+..+|+-+...++++.+.+ +-.|++.....+..+|.+.|...++..++.+.-++
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 2222211 12334455556666677777777777777665 34556777777777777777777777777776666
Q ss_pred CC
Q 007695 532 KE 533 (592)
Q Consensus 532 ~~ 533 (592)
|.
T Consensus 150 G~ 151 (161)
T d1wy6a1 150 GE 151 (161)
T ss_dssp TC
T ss_pred hH
Confidence 54
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.66 E-value=2.4 Score=33.22 Aligned_cols=141 Identities=11% Similarity=-0.075 Sum_probs=88.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007695 407 YGQAGDPDQARSNFDYMIRLGHKPDDRCTASMIAAYGKKNLLDKALNLLLELEKDGFEPGPATYTVLVDWLGRLQLINEA 486 (592)
Q Consensus 407 ~~~~g~~~~A~~lf~~m~~~g~~pd~~t~~~li~a~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 486 (592)
+.-.|.+++..++..+.... .+..-||-+|--....-+-+.....++..-+ ..|. ..++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FDl----------s~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhh---hcCc----------hhhhcHHHH
Confidence 34456667777777666653 2444455555444444444444444444322 1111 122233222
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 007695 487 EQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQ 566 (592)
Q Consensus 487 ~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~ 566 (592)
...+-.+ + -+......-++....+|+-++-.++++.+.+ +..+++...-.+..+|.+.|...++-+++.+..+.
T Consensus 76 v~C~~~~---n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 2222221 1 1344556667888899999999999988766 46788888899999999999999999999999999
Q ss_pred CCC
Q 007695 567 GFA 569 (592)
Q Consensus 567 g~~ 569 (592)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 875
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.66 E-value=4.6 Score=29.88 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 007695 482 LINEAEQLLGKISELGEAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERII 544 (592)
Q Consensus 482 ~~~~A~~l~~~m~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 544 (592)
+.-++.+-++.+......|++.+..+-+.+|.+.+++..|.++|+.+..+ ...+...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 44455666666666666777777777777777777777777777766655 222334555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.50 E-value=5.6 Score=30.93 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 007695 501 PFKIQVSLCDMYARAGI---EKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEA 565 (592)
Q Consensus 501 ~~~~~~~Li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~ 565 (592)
+..+--....++.++.+ .+++..+|+.+...+..-..+.+..|..+|.+.|++++|.+.++.+++
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33333344444443322 234444554444321111123334444555555555555555555544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=82.14 E-value=22 Score=33.86 Aligned_cols=278 Identities=11% Similarity=0.024 Sum_probs=143.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCc
Q 007695 264 IDAHAKENCLEDAERILKKMNENGIVPDIVTSTVLVHMYSKAGNLDRAKEAFESLRSHGFQPDKKVYNSMIMAYVNAGQP 343 (592)
Q Consensus 264 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~li~a~~~~g~~ 343 (592)
+..+.+.+++......+. ..+++...-.....+....|+.+.|...+..+-..|. . .+
T Consensus 79 l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~----------------~p 136 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-S----------------QP 136 (450)
T ss_dssp HHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-C----------------CC
T ss_pred HHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-C----------------Cc
Confidence 455566666655443331 1233455445566666677777777666665554331 1 12
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 007695 344 KLGMSLVDMMITSGIERSEEIYLALLRSFAQCGDVRGAGQITNIMRIEEFQPTLESCTLLVEAYGQAGDPDQARSNFDYM 423 (592)
Q Consensus 344 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~lf~~m 423 (592)
+..-.++..+...| .++...+-.-+......|+...|..+...+. ..........+....+-..+.. . .
T Consensus 137 ~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~----~~~~~~~~a~~~l~~~p~~~~~---~---~ 205 (450)
T d1qsaa1 137 NACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANNPNTVLT---F---A 205 (450)
T ss_dssp THHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHCGGGHHH---H---H
T ss_pred hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCC----hhHHHHHHHHHHHHhChHhHHH---H---H
Confidence 22223333333332 2244444444555555666666666654332 1122333444443322222211 1 1
Q ss_pred HHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHhcC
Q 007695 424 IRLGHKPDDRCTASMIAAYGK--KNLLDKALNLLLELEKDGFEPGPATYTVLV----DWLGRLQLINEAEQLLGKISELG 497 (592)
Q Consensus 424 ~~~g~~pd~~t~~~li~a~~~--~g~~~~A~~l~~~m~~~g~~p~~~ty~~li----~~~~~~g~~~~A~~l~~~m~~~g 497 (592)
... .++......+..++.+ ..+.+.|..++....... ..+..-...+- ..+...+..+.+...+......+
T Consensus 206 ~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 282 (450)
T d1qsaa1 206 RTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS 282 (450)
T ss_dssp HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC
T ss_pred hcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc
Confidence 111 1233333333333333 256777888777765542 22222222222 22233455677777777665543
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007695 498 EAPPFKIQVSLCDMYARAGIEKKALQALGFLEAKKEQMGPDDFERIINGLLAGGFLQDAQRVHGLMEAQGFAASERLKVA 577 (592)
Q Consensus 498 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~a~~~~g~~~~A~~l~~~m~~~g~~pd~~~~~~ 577 (592)
. +.......+......+++..+...+..+..... -.+.-.--+..++...|+.++|...|...-. .++ +..
T Consensus 283 ~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG 353 (450)
T d1qsaa1 283 Q--STSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYP 353 (450)
T ss_dssp C--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHH
T ss_pred c--chHHHHHHHHHHHHcCChHHHHHHHHhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHH
Confidence 3 455555566667778899988888887754211 1222223467888899999999999988753 233 666
Q ss_pred HHhhhhhcc
Q 007695 578 LISSQTFNR 586 (592)
Q Consensus 578 l~~~~~~~~ 586 (592)
++++...+.
T Consensus 354 ~LAa~~Lg~ 362 (450)
T d1qsaa1 354 MVAAQRIGE 362 (450)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 677666663
|