Citrus Sinensis ID: 007803

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
MVWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVNEKDLICAVLSGHLDPSVLISPSPPVLISSSCSTDETVVADSDAETEEETSPGHATAAVDNEEAPTYLSKEEISINHAVNRSDNQHETGLRDGNSSIAYRSADIHGADRSEASHGADFGDGYSCTANRLEDSHCAGFRDGSNSIANRSEDRRGTGFRDGNNCMTTSREKADLERENSDIIYSQNLVVRDLNVASTISSTANNGVLNFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTEEMAVSMKEEKKRKQMEALAEDMFNSAKGKRRGVAGTIYGLLSRK
cEEEEEccccccccccEEEEcccEEEEEcccEEEEEccccccccccEEEEEEEEccccccccccccccccEEEEEcccEEEEEEcccccccccEEEccccccccccccEEEEcccccEEEEEEccEEEEEccccccHHHHHHHHHcccEEcccccccccEEEEcccccccHHHHHHHHccccEEcHHHHHHHHHHccccccccccccccccccccccccccccccHHHcccccEEEEccccccccHHHHHHHHHHcccEEEEEEcccccccccccEEccEEEEEcccccHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEccccc
cEEEEEcccccccccEEEEEcccEEEEEcccccEEEcccccccccEEEEEEEccccccccccccccccccEEEEEEccccEEEEcccccccccEEEccccEEEEccccEEEEEccccEEEEEEEEEEEEEccccccHHHHHHHHHcccEEEcccccccEEEEEEcccccHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccEEEEEcHHHccccHHHHHHHHHccccEEEHHccccccccccccccccEEEEEccccHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccEEEEccccccccEEcccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccEcccccccEEcccccccccccccEEEEEcEEEcccccccccccccccccccHHEEEcccccccccHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccc
mvwglfpidplpgedkyyifskgnykvgrkgcdiiinkdkgvsrVHAEILVDEMislnpfqdksskvsttrvrikdcskygtfinknlgskekvhefpnkeatlkdgdlvsfgtgnatyrfcyAPLILFVdsfqvnaplqekvsSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVakkplvdvsWLEVVAEKsirtdfpgcnshvttlimegdpvelanvdtlenCMRGYTFLldssmkykygdQLQSLLEvsgaktlsiesfcpssqdsecvehnsvvyvlprksedcskSILKLsslsrvneKDLICAVLsghldpsvlispsppvlissscstdetvvadsdaeteeetspghataavdneeaptylskeeisinhavnrsdnqhetglrdgnssiayrsadihgadrseashgadfgdgysctanrledshcagfrdgsnsianrsedrrgtgfrdgnncmttsrekadlerensdiiysqnlvVRDLNVASTISstanngvlnfkrfrktniqsgnsfsslipfskypykdsdngtEEMAVSMKEEKKRKQMEALAEDMFNSakgkrrgvAGTIYGLLSRK
mvwglfpidplpgeDKYYIFSKGNYKVGRKGCDIIinkdkgvsRVHAEILVDemislnpfqdksskvsttrvrikdcskygtfinknlgskekVHEFpnkeatlkdgdlvsFGTGNATYRFCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAeksirtdfpgcnSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFcpssqdsecveHNSVVYvlprksedcSKSILklsslsrvnEKDLICAVLSGHLDPSVLISPSPPVLISSSCSTDETVVADSDAEteeetspghataavdneeapTYLSKEEISINhavnrsdnqhetglrdgnsSIAYRSADIHGADRSEASHGADFGDGYSCTANRLEDSHCAgfrdgsnsianrsedrrgtgfrdgnncmttsrekadlerensdiiysqnlvvRDLNVASTisstanngvlnfkrFRKTNiqsgnsfsslipfskypykdsdNGTEEMAVSMKEEKKRKQMEALAEDmfnsakgkrrgvaGTIYGLLSRK
MVWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCsksilklsslsRVNEKDLICAVLSGHLDpsvlispsppvlisssCSTDETVVADSDAETEEETSPGHATAAVDNEEAPTYLSKEEISINHAVNRSDNQHETGLRDGNSSIAYRSADIHGADRSEASHGADFGDGYSCTANRLEDSHCAGFRDGSNSIANRSEDRRGTGFRDGNNCMTTSREKADLERENSDIIYSQNLVVRDLNVASTISSTANNGVLNFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTEEMAVSMKEEKKRKQMEALAEDMFNSAKGKRRGVAGTIYGLLSRK
*VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ*****VSTTRVRIKDCSKYGTFINKNLGS***********ATLKDGDLVSFGTGNATYRFCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCP*****ECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVNEKDLICAVLSGHLDPSVLI*************************************************************************************************************************************************************DIIYSQNLVVRDLNVASTISSTANNGVLNFKRFRKTNIQ*******LIP*************************************************TIY******
MVWGLF*IDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMI**************TRVRIKDCSKYGTFINKNLG**********KEATLKDGDLVSFGTGNATYRFCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVT****************LENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIES************HNSVVYVLPRK***********SSLSRVNEKDLICAVLSGHLDP*****************************************************************************************************************************************************************************************************************PFSKYP*******************************F**********AGTIYGLLS**
MVWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQ***********RIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVNEKDLICAVLSGHLDPSVLISPSPPVLIS**************************TAAVDNEEAPTYLSKEEISINHAVNRSDNQHETGLRDGNSSIAYRSADIHGADRSEASHGADFGDGYSCTANRLEDSHCAGFRDGSNSIANRSEDRRGTGFRDGNNCMTTSREKADLERENSDIIYSQNLVVRDLNVASTISSTANNGVLNFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGT****************EALAEDMFNSAKGKRRGVAGTIYGLLSRK
MVWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMIS**********VSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVNEKDLICAVLSGHLDPSVLISPSPPVLISSSC*T******************************************************************************************************************************NCMTTSR**ADLERENSDIIYSQNLVVRDLNV**********GVLNFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTEEMAVSMKEEKKRKQMEALAEDMFNSAKGKRR**********SRK
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MVWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSILKLSSLSRVNEKDLICAVLSGHLDPSVLISPSPPVLISSSCSTDETVVADSDAETEEETSPGHATAAVDNEEAPTYLSKEEISINHAVNRSDNQHETGLRDGNSSIAYRSADIHGADRSEASHGADFGDGYSCTANRLEDSHCAGFRDGSNSIANRSEDRRGTGFRDGNNCMTTSREKADLERENSDIIYSQNLVVRDLNVASTISSTANNGVLNFKRFRKTNIQSGNSFSSLIPFSKYPYKDSDNGTEEMAVSMKEEKKRKQMEALAEDMFNSAKGKRRGVAGTIYGLLSRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query589 2.2.26 [Sep-21-2011]
Q9R207 751 Nibrin OS=Mus musculus GN yes no 0.388 0.304 0.276 4e-17
Q5RCV3 754 Nibrin OS=Pongo abelii GN yes no 0.390 0.305 0.277 4e-17
Q9DE07 753 Nibrin OS=Gallus gallus G yes no 0.385 0.301 0.273 5e-17
O60934 754 Nibrin OS=Homo sapiens GN yes no 0.288 0.225 0.318 4e-16
Q9JIL9 750 Nibrin OS=Rattus norvegic yes no 0.388 0.305 0.272 1e-15
Q5I2W8 818 Nibrin OS=Danio rerio GN= yes no 0.365 0.262 0.258 1e-13
>sp|Q9R207|NBN_MOUSE Nibrin OS=Mus musculus GN=Nbn PE=1 SV=1 Back     alignment and function desciption
 Score = 90.5 bits (223), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 21/250 (8%)

Query: 2   VWGLFPI-DPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPF 60
           +W L P     PGE  Y + +   Y VGRK C I+I  D+ +SR HA + V+      P 
Sbjct: 1   MWKLLPAAGAAPGEP-YRLLAGVEYVVGRKNCGILIENDQSISRNHAVLTVN-----FPV 54

Query: 61  QDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYR 120
              S       + IKD SKYGTF+N     +EK+        TLK GD V+FG   + +R
Sbjct: 55  TSLSQTDEIPTLTIKDNSKYGTFVN-----EEKMQT--GLSCTLKTGDRVTFGVFESKFR 107

Query: 121 FCYAPLILFVDSFQVNAP--LQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAIV 178
             Y PL++      V+    L + +  +G    + + +ECTH LV   ++V  + + A++
Sbjct: 108 VEYEPLVVCSSCLDVSGKTVLNQAILQLGGLTANNWTEECTH-LVMSAVKVTIKTICALI 166

Query: 179 AKKPLVDVSW----LEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYT 234
             +P++   +    L+ V  K    D       +    +    V+L+     +   +G T
Sbjct: 167 CGRPIIKPEYFSEFLKAVESKKQPPDIESFYPPIDEPAIGSKSVDLSGRHERKQIFKGKT 226

Query: 235 FLLDSSMKYK 244
           F+  ++ ++K
Sbjct: 227 FVFLNAKQHK 236
Component of the MRE11-RAD50-NBN (MRN complex) which plays a critical role in the cellular response to DNA damage and the maintenance of chromosome integrity. The complex is involved in double-strand break (DSB) repair, DNA recombination, maintenance of telomere integrity, cell cycle checkpoint control and meiosis. The complex possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity, which are provided by MRE11A. RAD50 may be required to bind DNA ends and hold them in close proximity. NBN modulate the DNA damage signal sensing by recruiting PI3/PI4-kinase family members ATM, ATR, and probably DNA-PKcs to the DNA damage sites and activating their functions. It can also recruit MRE11 and RAD50 to the proximity of DSBs by an interaction with the histone H2AX. NBN also functions in telomere length maintenance by generating the 3' overhang which serves as a primer for telomerase dependent telomere elongation. NBN is a major player in the control of intra-S-phase checkpoint and there is some evidence that NBN is involved in G1 and G2 checkpoints. The roles of NBS1/MRN encompass DNA damage sensor, signal transducer, and effector, which enable cells to maintain DNA integrity and genomic stability. Forms a complex with RBBP8 to link DNA double-strand break sensing to resection.
Mus musculus (taxid: 10090)
>sp|Q5RCV3|NBN_PONAB Nibrin OS=Pongo abelii GN=NBN PE=2 SV=2 Back     alignment and function description
>sp|Q9DE07|NBN_CHICK Nibrin OS=Gallus gallus GN=NBN PE=1 SV=1 Back     alignment and function description
>sp|O60934|NBN_HUMAN Nibrin OS=Homo sapiens GN=NBN PE=1 SV=1 Back     alignment and function description
>sp|Q9JIL9|NBN_RAT Nibrin OS=Rattus norvegicus GN=Nbn PE=1 SV=2 Back     alignment and function description
>sp|Q5I2W8|NBN_DANRE Nibrin OS=Danio rerio GN=nbn PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query589
359476463595 PREDICTED: uncharacterized protein LOC10 0.979 0.969 0.557 1e-172
255569821529 Nibrin, putative [Ricinus communis] gi|2 0.891 0.992 0.553 1e-165
357491637571 Nibrin [Medicago truncatula] gi|35551744 0.960 0.991 0.516 1e-156
356553212555 PREDICTED: uncharacterized protein LOC10 0.928 0.985 0.493 1e-146
297828728537 hypothetical protein ARALYDRAFT_477508 [ 0.901 0.988 0.458 1e-137
145338027542 nijmegen breakage syndrome 1 protein [Ar 0.906 0.985 0.448 1e-129
356499048526 PREDICTED: uncharacterized protein LOC10 0.882 0.988 0.456 1e-125
118027140533 NBS1 [Arabidopsis thaliana] 0.891 0.984 0.435 1e-124
111414330557 DNA damage signaling and repair protein 0.930 0.983 0.382 1e-103
242039311562 hypothetical protein SORBIDRAFT_01g01882 0.940 0.985 0.380 1e-102
>gi|359476463|ref|XP_003631844.1| PREDICTED: uncharacterized protein LOC100853048 [Vitis vinifera] gi|296083807|emb|CBI24024.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 337/604 (55%), Positives = 421/604 (69%), Gaps = 27/604 (4%)

Query: 1   MVWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEMISLNPF 60
           MVWGLFP+DPL GED YYIF+KG YKVGRKGCD+I+ KDKGVSR+HAEI+VD MISL+P 
Sbjct: 1   MVWGLFPVDPLSGEDSYYIFAKGTYKVGRKGCDVIVKKDKGVSRIHAEIIVDSMISLDPQ 60

Query: 61  QDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYR 120
            +KSS VS+  VRI+DCSKYGTFINK+LGSKEK+HEFPNKE TLKDGDLVSFGTGNATYR
Sbjct: 61  WNKSSNVSSN-VRIRDCSKYGTFINKDLGSKEKLHEFPNKETTLKDGDLVSFGTGNATYR 119

Query: 121 FCYAPLILFV---DSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLDAI 177
           F + PLI FV   + FQ+N  LQ+K+SSIGA +T  +  ECTH+LV   M VK +L+D  
Sbjct: 120 FGFVPLIFFVYRSEPFQMNHSLQDKISSIGASVTRAWSSECTHVLVDQFMLVKEDLVDIF 179

Query: 178 VAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTFLL 237
           +AKKPLV   W+E VAEK+IR + P CN +V TL   G  V++ +  + ENC++G TFLL
Sbjct: 180 LAKKPLVLNDWIEFVAEKNIRNEIPSCNDYVPTLTCGGVSVKVGDSISRENCLKGCTFLL 239

Query: 238 DSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCSKSIL 297
           + + KY +GD+LQSLLE SGAK  SI+     SQ  E  E+N VV+V+P  S D   S  
Sbjct: 240 EPAHKYNFGDRLQSLLEASGAKVDSIDGLSSRSQGLEGGENNRVVHVIPACSADKFDSFH 299

Query: 298 KLSSLSRVNEKDLICAVLSGHLDPSVLISPSPPVLISSSCSTDETVVADSDAETEEETSP 357
              S+S V E +LI AV+SGHLDPS +I  SPPVL+SSSCSTDETVVADSDAE E  TS 
Sbjct: 300 NRRSVSSVKEMNLISAVISGHLDPSTII--SPPVLVSSSCSTDETVVADSDAEVETATS- 356

Query: 358 GHATAAVDNEEAPTYLSKEEISINHAVNRSDNQHETGLRDGNSSIAYRSADIHGADRSEA 417
            HA +A   +E   Y SK EIS+   V  SD + ET      ++ A  +  I    + E 
Sbjct: 357 SHANSAAHTKEVFKYDSKGEISV---VADSDAEVETATLIHANAAACTTETIKYDSKGEI 413

Query: 418 SHGADFGDGYSCTANRLEDSHCAGFR---------DGSNSI---ANRSEDRRGTGFRDGN 465
           S  AD  D    TA  +  +  A  R          G  SI   AN SE    T FR  N
Sbjct: 414 SVVAD-SDAEVETATSIHTN--AAVRTAEDIKYDSKGEISIGQAANASETGHMTHFRQRN 470

Query: 466 NCMTTSREKAD-LERENSDIIYSQNLVVRDLNVASTISSTANNGVLNFKRFRKTNIQSGN 524
           + +TT R+K D  E  N D++YSQ+L+VRD+N+ ++ SST N  ++NFK FRK   QSGN
Sbjct: 471 DGVTTRRDKVDESESGNPDVLYSQDLIVRDINLLTSFSSTKNR-IVNFKCFRKAKTQSGN 529

Query: 525 SFSSLIPFSKYPYKDSDNGTEEMAVSMKEEKKRKQMEALAEDMFNSAKGKRRGVAGTIYG 584
           SF++LIPF+KYPYK+SDNG++E+  S+KEEKKRKQMEA+AED+FN+ KG+RRGVAG++ G
Sbjct: 530 SFNNLIPFAKYPYKESDNGSDEVMQSVKEEKKRKQMEAIAEDLFNNEKGRRRGVAGSLAG 589

Query: 585 LLSR 588
           LL+R
Sbjct: 590 LLTR 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255569821|ref|XP_002525874.1| Nibrin, putative [Ricinus communis] gi|223534788|gb|EEF36478.1| Nibrin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357491637|ref|XP_003616106.1| Nibrin [Medicago truncatula] gi|355517441|gb|AES99064.1| Nibrin [Medicago truncatula] Back     alignment and taxonomy information
>gi|356553212|ref|XP_003544952.1| PREDICTED: uncharacterized protein LOC100783205 [Glycine max] Back     alignment and taxonomy information
>gi|297828728|ref|XP_002882246.1| hypothetical protein ARALYDRAFT_477508 [Arabidopsis lyrata subsp. lyrata] gi|297328086|gb|EFH58505.1| hypothetical protein ARALYDRAFT_477508 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145338027|ref|NP_186917.2| nijmegen breakage syndrome 1 protein [Arabidopsis thaliana] gi|76782245|gb|ABA54896.1| NBS1 [Arabidopsis thaliana] gi|332640326|gb|AEE73847.1| nijmegen breakage syndrome 1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356499048|ref|XP_003518356.1| PREDICTED: uncharacterized protein LOC100789459 [Glycine max] Back     alignment and taxonomy information
>gi|118027140|gb|ABK59968.1| NBS1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|111414330|gb|ABH09757.1| DNA damage signaling and repair protein [Zea mays] gi|413933979|gb|AFW68530.1| DNA damage signaling and repair protein [Zea mays] Back     alignment and taxonomy information
>gi|242039311|ref|XP_002467050.1| hypothetical protein SORBIDRAFT_01g018820 [Sorghum bicolor] gi|241920904|gb|EER94048.1| hypothetical protein SORBIDRAFT_01g018820 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query589
TAIR|locus:2076934542 NBS1 "AT3G02680" [Arabidopsis 0.624 0.678 0.469 4.5e-122
UNIPROTKB|Q6XV80 763 nbn "NBS1" [Xenopus laevis (ta 0.385 0.297 0.278 1.9e-18
UNIPROTKB|Q6EKW1 763 NBS1 "Recombination and DNA re 0.385 0.297 0.278 2.3e-18
MGI|MGI:1351625 751 Nbn "nibrin" [Mus musculus (ta 0.407 0.319 0.274 2.8e-18
UNIPROTKB|Q9DE07 753 NBN "Nibrin" [Gallus gallus (t 0.385 0.301 0.269 2.3e-17
UNIPROTKB|F1NX19 753 NBN "Nibrin" [Gallus gallus (t 0.385 0.301 0.269 3e-17
UNIPROTKB|Q5RCV3 754 NBN "Nibrin" [Pongo abelii (ta 0.390 0.305 0.273 3.2e-17
UNIPROTKB|F6PSE2 754 NBN "Uncharacterized protein" 0.388 0.303 0.273 6.1e-17
RGD|621420 750 Nbn "nibrin" [Rattus norvegicu 0.387 0.304 0.278 5.4e-16
UNIPROTKB|F1RXF2332 NBN "Uncharacterized protein" 0.388 0.689 0.281 7.1e-16
TAIR|locus:2076934 NBS1 "AT3G02680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 890 (318.4 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
 Identities = 176/375 (46%), Positives = 249/375 (66%)

Query:     1 MVWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCDIIINKDKGVSRVHAEILVDEM-ISLNP 59
             MVWGLFP+DPL GEDKYYIFSKG YKVGRKGCDIIINKDKGVSR+HAE+  D   +S + 
Sbjct:     1 MVWGLFPVDPLSGEDKYYIFSKGIYKVGRKGCDIIINKDKGVSRIHAELTFDATTVSTSR 60

Query:    60 FQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATY 119
                 SS  S+  +R+KDCSKYGTF+  +LG+K+KVHE  NKE  L+DGD+++FGTG+A Y
Sbjct:    61 RNKSSSDTSSFVIRVKDCSKYGTFVKTDLGTKDKVHELSNKEKILQDGDVIAFGTGSAIY 120

Query:   120 RFCYAPLILFV----DSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVKGELLD 175
             R    PL+ ++    ++F+V+ P+Q+ VSSIGA I+    +ECTH+L++  M+V   L++
Sbjct:   121 RLSLIPLVFYLCPSSETFKVDQPVQDAVSSIGARISPTLSEECTHVLLEPRMQVNEALIN 180

Query:   176 AIVAKKPLVDVSWLEVVAEKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMRGYTF 235
             AI+AKK ++  +W+ ++AEKSI ++ PG + +  ++++E   V++  ++  E C+ G+TF
Sbjct:   181 AILAKKTIILTNWVMLLAEKSICSEIPGYSQYRPSVMVEEALVDVLELNVREKCLEGFTF 240

Query:   236 LLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSEDCXXX 295
             +L+ +  Y++G    SLLEV GA+T++IE     SQDS+  E N ++ V+P+ + D    
Sbjct:   241 VLEPTDTYRFGCSFPSLLEVCGAETVTIEDISSMSQDSQFGEINRMICVIPKSAGDKFGR 300

Query:   296 XXXXXXXXRVNEKDLICAVLSGHLDXXXXXXXXXXXXXXXXCSTDETVVADSDAETEEET 355
                     RVNE DL+CAV SG+L                 CSTDETVVADS+AE EE T
Sbjct:   301 FKHLSLLSRVNEMDLVCAVFSGNLPSTSLIPPSVVISSS--CSTDETVVADSEAEEEETT 358

Query:   356 SPGHATAAVDNEEAP 370
             S  H   A +  E P
Sbjct:   359 SSVHMIDATEKAETP 373
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0007129 "synapsis" evidence=IGI;RCA
GO:0007131 "reciprocal meiotic recombination" evidence=IGI;RCA
GO:0000003 "reproduction" evidence=RCA
GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006259 "DNA metabolic process" evidence=RCA
GO:0006302 "double-strand break repair" evidence=RCA
GO:0006310 "DNA recombination" evidence=RCA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0006325 "chromatin organization" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0007059 "chromosome segregation" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0007067 "mitosis" evidence=RCA
GO:0007126 "meiosis" evidence=RCA
GO:0007140 "male meiosis" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010332 "response to gamma radiation" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0010638 "positive regulation of organelle organization" evidence=RCA
GO:0016444 "somatic cell DNA recombination" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0032204 "regulation of telomere maintenance" evidence=RCA
GO:0032504 "multicellular organism reproduction" evidence=RCA
GO:0033044 "regulation of chromosome organization" evidence=RCA
GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA
GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048451 "petal formation" evidence=RCA
GO:0048453 "sepal formation" evidence=RCA
UNIPROTKB|Q6XV80 nbn "NBS1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6EKW1 NBS1 "Recombination and DNA repair protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
MGI|MGI:1351625 Nbn "nibrin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9DE07 NBN "Nibrin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NX19 NBN "Nibrin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RCV3 NBN "Nibrin" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F6PSE2 NBN "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|621420 Nbn "nibrin" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RXF2 NBN "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 3e-14
pfam0049867 pfam00498, FHA, FHA domain 9e-10
smart0024052 smart00240, FHA, Forkhead associated domain 0.001
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information 
 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 24/122 (19%)

Query: 2   VWGLFPIDPLPGEDKYYIFSKGNYKVGR--KGCDIIINKDKGVSRVHAEILVDEMISLNP 59
           V  L  +       +YY+   G Y +GR    CDI++  D  VSR HA I  D    +  
Sbjct: 1   VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVL-DDPSVSRRHAVIRYDGDGGV-- 57

Query: 60  FQDKSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATY 119
                       V I   S  GTF+N    S       P +   L+DGD++  G  + ++
Sbjct: 58  ------------VLIDLGSTNGTFVNGQRVS-------PGEPVRLRDGDVIRLGNTSISF 98

Query: 120 RF 121
           RF
Sbjct: 99  RF 100

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 589
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.53
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.39
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.38
TIGR03354396 VI_FHA type VI secretion system FHA domain protein 99.12
KOG1882293 consensus Transcriptional regulator SNIP1, contain 99.08
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.0
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 98.68
COG3456430 Predicted component of the type VI protein secreti 98.65
KOG1881793 consensus Anion exchanger adaptor protein Kanadapt 98.49
KOG2043896 consensus Signaling protein SWIFT and related BRCT 98.27
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 98.18
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 98.08
KOG1880337 consensus Nuclear inhibitor of phosphatase-1 [Gene 98.06
KOG4362684 consensus Transcriptional regulator BRCA1 [Replica 98.03
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 97.79
PF0859965 Nbs1_C: DNA damage repair protein Nbs1; InterPro: 97.58
smart0029280 BRCT breast cancer carboxy-terminal domain. 97.54
KOG0615475 consensus Serine/threonine protein kinase Chk2 and 97.5
KOG3226508 consensus DNA repair protein [Replication, recombi 97.03
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 95.46
TIGR02500410 type_III_yscD type III secretion apparatus protein 94.93
KOG3524 850 consensus Predicted guanine nucleotide exchange fa 92.67
KOG2293547 consensus Daxx-interacting protein MSP58/p78, cont 91.81
PRK06195309 DNA polymerase III subunit epsilon; Validated 89.8
KOG35481176 consensus DNA damage checkpoint protein RHP9/CRB2/ 89.56
PLN03123 981 poly [ADP-ribose] polymerase; Provisional 87.14
PLN03122 815 Poly [ADP-ribose] polymerase; Provisional 85.57
TIGR01663526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 85.49
KOG1892 1629 consensus Actin filament-binding protein Afadin [C 84.88
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 83.16
smart0029280 BRCT breast cancer carboxy-terminal domain. 80.68
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information 
Probab=99.53  E-value=2.8e-14  Score=115.98  Aligned_cols=66  Identities=41%  Similarity=0.764  Sum_probs=57.8

Q ss_pred             EEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-CccceEEeCcCCCceeeeccCCceE
Q 007803           25 YKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SKYGTFINKNLGSKEKVHEFPNKEA  102 (589)
Q Consensus        25 YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-SknGTfVNg~~~~~ekI~~~~g~~~  102 (589)
                      |+|||.. |+|.| ++++|||.||.|.+...               ..|+|+|+ |+||||||+     +++.  ++.++
T Consensus         1 ~~iGR~~~~di~l-~~~~iSr~Ha~i~~~~~---------------~~~~i~d~~s~ngt~vng-----~~l~--~~~~~   57 (68)
T PF00498_consen    1 VTIGRSPDCDIVL-PDPSISRRHARISFDDD---------------GQFYIEDLGSTNGTFVNG-----QRLG--PGEPV   57 (68)
T ss_dssp             EEEESSTTSSEEE-TSTTSSTTSEEEEEETT---------------EEEEEEESSSSS-EEETT-----EEES--STSEE
T ss_pred             CEEcCCCCCCEEE-CCHheeeeeeEEEEece---------------eeEEEEeCCCCCcEEECC-----EEcC--CCCEE
Confidence            7899997 99999 68999999999999863               26999999 999999999     7886  57899


Q ss_pred             EccCCCeEEEc
Q 007803          103 TLKDGDLVSFG  113 (589)
Q Consensus       103 ~L~~GD~I~fG  113 (589)
                      .|++||+|+||
T Consensus        58 ~L~~gd~i~~G   68 (68)
T PF00498_consen   58 PLKDGDIIRFG   68 (68)
T ss_dssp             EE-TTEEEEET
T ss_pred             ECCCCCEEEcC
Confidence            99999999998

It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [] Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] Back     alignment and domain information
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton] Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
3huf_A325 DNA repair and telomere maintenance protein NBS1; 1e-30
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 4e-16
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 1e-12
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 4e-12
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 1e-11
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 4e-11
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 7e-10
3po8_A100 RV0020C protein, putative uncharacterized protein 2e-09
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 4e-09
2xt9_B115 Putative signal transduction protein GARA; lyase-s 1e-08
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 1e-08
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 2e-08
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 3e-08
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 4e-08
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 4e-08
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 5e-08
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 6e-08
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 7e-08
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 8e-08
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 9e-08
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 2e-07
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 3e-07
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 3e-07
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 4e-07
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 2e-06
1t15_A214 Breast cancer type 1 susceptibility protein; prote 2e-06
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 3e-06
2g1l_A104 Kinesin-like protein KIF1C; transport, FHA domain, 8e-06
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 4e-05
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 6e-05
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 2e-04
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 5e-04
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Length = 325 Back     alignment and structure
 Score =  121 bits (304), Expect = 1e-30
 Identities = 49/326 (15%), Positives = 109/326 (33%), Gaps = 34/326 (10%)

Query: 3   WGLFPIDPLPGEDKYYIFSKGNYKVGRKGCD---IIINKDKGVSRVHAEILVDEMISLNP 59
           W +     +       +F  G Y VGR   D    I    K +S+ HA   +        
Sbjct: 2   WIIEAEGDILKGKSRILF-PGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSE--- 57

Query: 60  FQDKSSKVSTTRVRIKDC-SKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNAT 118
                         +KD  +K+GT +N+     + V    N ++  +    +  G    T
Sbjct: 58  --KDYFTGGPCEFEVKDLDTKFGTKVNE-----KVV--GQNGDSYKEKDLKIQLGKCPFT 108

Query: 119 YRFCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKFCQECTHILVQHHMRVK--GELLDA 176
               +  + +  D+ ++ +     ++ +G     +     TH ++            + A
Sbjct: 109 INAYWRSMCIQFDNPEMLSQWASNLNLLGIPTGLRDSDATTHFVMNRQAGSSITVGTMYA 168

Query: 177 IVAKKPLVDVSWLEVVA-----EKSIRTDFPGCNSHVTTLIMEGDPVELANVDTLENCMR 231
            + K  ++D S+L+ ++          +  P        +I   D    +  D + +   
Sbjct: 169 FLKKTVIIDDSYLQYLSTVKESVIEDASLMPDALECFKNIIKNNDQFPSSPEDCINSLEG 228

Query: 232 GYTFLLDSSMKYKYGDQLQSLLEVSGAKTLSIESFCPSSQDSECVEHNSVVYVLPRKSED 291
               +L++S       +   LLE+ G   L I +F       + +  +   +V+   +  
Sbjct: 229 FSCAMLNTS------SESHHLLELLG---LRISTFMSLGDIDKELI-SKTDFVVLNNAVY 278

Query: 292 CSKSILKLSSLSRVNEKDLICAVLSG 317
            S+ I     +  +  + L   ++  
Sbjct: 279 DSEKISFPEGIFCLTIEQLWKIIIER 304
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419 Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Length = 158 Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 182 Back     alignment and structure
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural genomics consortium, kines transport protein; 2.60A {Homo sapiens} SCOP: b.26.1.2 Length = 104 Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Length = 124 Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Length = 259 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query589
3huf_A325 DNA repair and telomere maintenance protein NBS1; 100.0
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.73
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.68
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.66
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.65
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.64
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.63
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.63
3po8_A100 RV0020C protein, putative uncharacterized protein 99.63
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 99.62
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.62
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 99.61
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.61
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.61
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 99.61
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.61
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.6
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.6
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.6
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.6
2k2w_A118 Recombination and DNA repair protein; BRCT domain, 99.59
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.59
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.57
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.57
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 99.57
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.55
1t15_A214 Breast cancer type 1 susceptibility protein; prote 99.53
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.53
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.52
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 99.51
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.51
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.48
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.47
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 99.47
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.46
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 99.41
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 99.39
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.39
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.38
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.23
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.14
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.03
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 98.91
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 98.85
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 98.8
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 98.71
2vxb_A241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 98.68
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 98.65
4a0e_A123 YSCD, type III secretion protein; transport protei 98.57
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 98.31
3t7k_A256 RTT107, regulator of TY1 transposition protein 107 98.25
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 98.18
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 98.08
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 98.05
1wv3_A238 Similar to DNA segregation ATPase and related prot 97.97
4id3_A92 DNA repair protein REV1; BRCT domain, protein bind 97.84
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 97.79
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 97.76
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 97.62
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 97.47
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 97.46
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 97.45
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 97.29
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 97.18
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 95.72
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 95.7
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 95.28
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 95.1
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 95.01
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 94.74
2coe_A120 Deoxynucleotidyltransferase, terminal variant; BRC 94.05
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 93.37
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 93.17
2dun_A133 POL MU, DNA polymerase MU; layers A/B/A, parallel 92.93
2ep8_A100 Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r 92.71
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 91.23
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 90.91
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 90.51
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 90.42
3pc7_A88 DNA ligase 3; DNA repair, BRCT domain, protein:pro 88.42
2ep8_A100 Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r 83.08
4id3_A92 DNA repair protein REV1; BRCT domain, protein bind 82.0
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 81.32
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 80.35
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-45  Score=379.55  Aligned_cols=238  Identities=17%  Similarity=0.271  Sum_probs=195.1

Q ss_pred             eeEEeeCCCCCCCCeEEEecCCeEEEccCCCC----eeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC
Q 007803            2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKGCD----IIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC   77 (589)
Q Consensus         2 MW~L~~~~~~~G~~~~~Ll~g~~YtIGRk~cd----IvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl   77 (589)
                      ||+|++.+++.+|+++||.++. |+|||+.|+    |++ +|++|||+||+|.+..+..+++.     +..++.++|+|+
T Consensus         1 MWiL~~~~d~~~Gkr~~L~pg~-YlIGR~~~~~~~lI~i-dD~SISRqHA~I~v~~v~~~dg~-----~~~~~~l~I~DL   73 (325)
T 3huf_A            1 MWIIEAEGDILKGKSRILFPGT-YIVGRNVSDDSSHIQV-ISKSISKRHARFTILTPSEKDYF-----TGGPCEFEVKDL   73 (325)
T ss_dssp             CEEEEESTTTTTTCCEEECSEE-EEEESSCCCBTTEEEC-CCTTSCSSCEEEEECCCCHHHHH-----HCCCCCEEEEEC
T ss_pred             CcEEeccCccCCCeEEEecCCe-EEECCCCCccCceeec-CCCCccccceEEEEecccccccc-----cCCcceEEEEEC
Confidence            9999998655577999999988 999999853    466 99999999999999865333221     134568999999


Q ss_pred             -CccceEEeCcCCCceeeeccCCceEEc-cCCCeEEEccCCcccceecCCeEEeecCcccchhHHHHHHhcCCeecccc-
Q 007803           78 -SKYGTFINKNLGSKEKVHEFPNKEATL-KDGDLVSFGTGNATYRFCYAPLILFVDSFQVNAPLQEKVSSIGAFITSKF-  154 (589)
Q Consensus        78 -SknGTfVNg~~~~~ekI~~~~g~~~~L-~~GD~I~fG~~~~~frl~~~PlVl~~Ssl~~~~~L~~~l~~LGg~vv~~w-  154 (589)
                       |||||||||     ++|.   +....| .+||+|+||.+...|||+|+|+|+++++.+....|++.+.+|||+++ +| 
T Consensus        74 gSknGTfVNG-----erI~---~~~~~L~~dgd~I~fG~~~~~fRl~W~P~Vl~~Sske~~~~L~~~L~~LGik~v-~~~  144 (325)
T 3huf_A           74 DTKFGTKVNE-----KVVG---QNGDSYKEKDLKIQLGKCPFTINAYWRSMCIQFDNPEMLSQWASNLNLLGIPTG-LRD  144 (325)
T ss_dssp             SCSSCEEETT-----EECC---TTCEEECSSEEEEEETTCSSCEEEEECCCCEEESCHHHHHHHHHHHHTTTCCEE-SSC
T ss_pred             CCCCCEEECC-----EECC---CceeeecCCCCEEEecCCcceEEEEEeeeEEEecCHHHHHHHHHHHHHcCCEEE-Ecc
Confidence             999999999     8886   555666 48999999999999999999999999754444569999999999999 99 


Q ss_pred             cccceEEEEec--cccchhhHHHHHHcCCceechhHHHHHH--hccC---CCCCCCCCCCCCCCccCCCCccccCCcCcc
Q 007803          155 CQECTHILVQH--HMRVKGELLDAIVAKKPLVDVSWLEVVA--EKSI---RTDFPGCNSHVTTLIMEGDPVELANVDTLE  227 (589)
Q Consensus       155 s~~cTHLV~~~--s~r~T~KlL~ALi~gkpIVtp~wl~aLa--~~~~---~~elPd~~dflPpl~ie~~~~~l~p~~~R~  227 (589)
                      +++||||||..  ..++|+|+|+||++|||||+++||++++  +.++   ..+||++++|+|+++...+++. .|.+.=.
T Consensus       145 ~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~e~~~~~~~~~wPdp~dflP~i~~g~Ep~~-~~~~~~~  223 (325)
T 3huf_A          145 SDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTVKESVIEDASLMPDALECFKNIIKNNDQFP-SSPEDCI  223 (325)
T ss_dssp             CTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTCTTCCCCTTSSHHHHHHHHHHHHTTCTTCC-SCHHHHT
T ss_pred             CCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHhhhhhhhcccCCCChHHcCCCCCCCCCCCC-CCHHHhh
Confidence            77899999941  4567888999999999999999999996  4455   6799999999999754333332 2334447


Q ss_pred             cCcCCcEEEEcCCCcccchhhHHHHHHHcCceEE
Q 007803          228 NCMRGYTFLLDSSMKYKYGDQLQSLLEVSGAKTL  261 (589)
Q Consensus       228 ~LF~G~TFIf~~~~qy~~~~~L~~lIe~aGGkvl  261 (589)
                      +-|+||+|+|++...     .+..++++.|-.+-
T Consensus       224 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  252 (325)
T 3huf_A          224 NSLEGFSCAMLNTSS-----ESHHLLELLGLRIS  252 (325)
T ss_dssp             TTTTTCEEEEETCCH-----HHHHHHHHTTCEEE
T ss_pred             cccCceEEEEEcCch-----hhhHHHHHhcceee
Confidence            889999999999875     78999999997654
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis} Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* Back     alignment and structure
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* Back     alignment and structure
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 589
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 2e-08
d2g1la1102 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {H 1e-07
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 4e-07
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 2e-06
d1wlna1107 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [T 5e-06
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 2e-05
d1lgpa_113 b.26.1.2 (A:) Cell cycle checkpoint protein Chfr { 2e-05
d2affa198 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapi 3e-04
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 5e-04
d2brfa1101 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosph 0.002
d2ff4a399 b.26.1.2 (A:284-382) Probable regulatory protein E 0.002
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Phosphotyrosine binding domain of Rad53
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (123), Expect = 2e-08
 Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 11/142 (7%)

Query: 5   LFPIDPLPGEDKYYI-FSKGNYKVGR-KGCDIIINKDKGVSRVHAEILVDEMISLNPFQD 62
           L P+     ++   I      + +GR + C+  I  D  +SRVH  I             
Sbjct: 8   LKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIE-DNRLSRVHCFIFKKRHAVGK-SMY 65

Query: 63  KSSKVSTTRVRIKDCSKYGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGNATYRFC 122
           +S       +         +++N       ++      +  L+DGD +            
Sbjct: 66  ESPAQGLDDIWYCHTGTNVSYLN-----NNRMI--QGTKFLLQDGDEIKIIWDKNNKFVI 118

Query: 123 YAPLILFVDSFQVNAPLQEKVS 144
              + +   +   N  L     
Sbjct: 119 GFKVEINDTTGLFNEGLGMLQE 140
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query589
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.68
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.63
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.62
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.62
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.59
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.56
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.56
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.56
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.55
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.54
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.52
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.34
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 98.78
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 98.17
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 97.96
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 97.8
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 95.83
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 95.26
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 94.94
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 94.39
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 88.36
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 88.01
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 80.54
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 80.1
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Probable regulatory protein EmbR, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=6.3e-17  Score=139.33  Aligned_cols=85  Identities=28%  Similarity=0.396  Sum_probs=71.5

Q ss_pred             eeEEeeCCCCCCCCeEEEecCCeEEEccCC-CCeeecCCCcccccceEEEEeecccCCcccCCCCCcccccEEEEEC-Cc
Q 007803            2 VWGLFPIDPLPGEDKYYIFSKGNYKVGRKG-CDIIINKDKGVSRVHAEILVDEMISLNPFQDKSSKVSTTRVRIKDC-SK   79 (589)
Q Consensus         2 MW~L~~~~~~~G~~~~~Ll~g~~YtIGRk~-cdIvI~~D~sISR~HA~I~v~~~~~~~~~~~~~~~~~~~~v~I~Dl-Sk   79 (589)
                      |++|....    ..+.|.+....++|||.. |||+| +|+.|||.||.|.+...                .|+|+|+ |+
T Consensus         6 ~~~l~~~~----~G~~~~l~~~~~~IGR~~~~di~l-~d~~VSr~Ha~i~~~~~----------------~~~i~Dl~S~   64 (99)
T d2ff4a3           6 VAYLHDIA----SGRGYPLQAAATRIGRLHDNDIVL-DSANVSRHHAVIVDTGT----------------NYVINDLRSS   64 (99)
T ss_dssp             CCEEEETT----TCCEEECCSSEEEEESSTTSSEEC-CCTTSCTTCEEEEECSS----------------CEEEEECSCS
T ss_pred             EEEEEcCC----CCCEEEECCCCEEEeeCcCCCEEE-CCccccceeEEEEEeCC----------------EEEEEECCCc
Confidence            67777643    235677778899999987 99999 79999999999998652                5899999 99


Q ss_pred             cceEEeCcCCCceeeeccCCceEEccCCCeEEEccCC
Q 007803           80 YGTFINKNLGSKEKVHEFPNKEATLKDGDLVSFGTGN  116 (589)
Q Consensus        80 nGTfVNg~~~~~ekI~~~~g~~~~L~~GD~I~fG~~~  116 (589)
                      |||||||     ++|+    .++.|++||+|+||...
T Consensus        65 nGt~vNg-----~~i~----~~~~L~~Gd~i~iG~~~   92 (99)
T d2ff4a3          65 NGVHVQH-----ERIR----SAVTLNDGDHIRICDHE   92 (99)
T ss_dssp             SCCEETT-----EECS----SEEEECTTCEEEETTEE
T ss_pred             CCCeECC-----EEcC----CceECCCCCEEEECCEE
Confidence            9999999     8885    57899999999999643
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure