Citrus Sinensis ID: 007808
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 589 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LS72 | 600 | Pentatricopeptide repeat- | no | no | 0.891 | 0.875 | 0.386 | 1e-120 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.901 | 0.716 | 0.394 | 1e-120 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.908 | 0.724 | 0.353 | 1e-114 | |
| Q9FHR3 | 550 | Putative pentatricopeptid | no | no | 0.882 | 0.945 | 0.376 | 1e-107 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.835 | 0.629 | 0.397 | 1e-107 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.889 | 0.751 | 0.343 | 1e-107 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.843 | 0.772 | 0.375 | 1e-105 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.906 | 0.784 | 0.355 | 1e-105 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.882 | 0.617 | 0.354 | 1e-104 | |
| Q1PEU4 | 555 | Pentatricopeptide repeat- | no | no | 0.877 | 0.931 | 0.377 | 1e-104 |
| >sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 205/530 (38%), Positives = 328/530 (61%), Gaps = 5/530 (0%)
Query: 17 HLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYA 76
+ Q+ Q++ L + +I P++I+A + +Q A ++F+++ + NV N++ +A
Sbjct: 34 QVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHA 93
Query: 77 QNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIF 136
QN +F++M++ + FT+P +LK+C + L + +H + K G ++I+
Sbjct: 94 QNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIY 153
Query: 137 VGTALIELYST--GKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPE 194
V ALI+ YS G + A K+F +M ER+ V W SM+ G + G++ AR LF+ P+
Sbjct: 154 VPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQ 213
Query: 195 RDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEM 254
RD+I WNT++ GY R M +A +LF++MP+++ +SW+TM+ GY+ GD+E + +F++M
Sbjct: 214 RDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKM 273
Query: 255 P--ERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312
P +NV +W +I GYA GL E +M+ G F + A ++++L+AC G L
Sbjct: 274 PLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKF-DAAAVISILAACTESGLLS 332
Query: 313 FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLA 372
+H + + N V NAL+DMYAKCG ++ A DVFN + KDL++WNT++ GL
Sbjct: 333 LGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLG 392
Query: 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI 432
+HG G A+ LF M+ G PD +TFI +LC+C H GL++EG+ YF SM Y +VPQ+
Sbjct: 393 VHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQV 452
Query: 433 EHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTE 492
EHYGC+VDLL R GRL EA+ V+ MP+E + VIW LLG+CR++ V++A+ L+ L +
Sbjct: 453 EHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVK 512
Query: 493 LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542
L+P +P N+ +LSNIY W+ VA I+ M+ G +K G SS+E+ +
Sbjct: 513 LDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELED 562
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 227/576 (39%), Positives = 334/576 (57%), Gaps = 45/576 (7%)
Query: 13 ETTKHLHQIQTQVVTSGLEKSDYITPRIITAC---AQLKQMTYARKMFDKITDQNVVSWN 69
+T + L I Q++ GL ++Y ++I C + + YA +F I + N++ WN
Sbjct: 44 KTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWN 103
Query: 70 AMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKN 129
MF G+A + + + L+ M L +PN +TFP VLKSC K A +EG+++H VLK
Sbjct: 104 TMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKL 163
Query: 130 GFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLF 189
G +++V T+LI +Y +E A+KVF + R+VV +T++I GY S G I +A+ LF
Sbjct: 164 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLF 223
Query: 190 ELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVIS------------------- 230
+ P +DV+ WN ++SGY + N EA +LF M K +V
Sbjct: 224 DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 283
Query: 231 -------W-------------NTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYA 270
W N ++ Y+ G++E LFE +P ++V SWN LIGGY
Sbjct: 284 LGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYT 343
Query: 271 NNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAE--YNGYQG 328
+ L+ E L F+ ML G PND T++++L ACA LGA+D +W+HVY + G
Sbjct: 344 HMNLYKEALLLFQEMLRSGET-PNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTN 402
Query: 329 NVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMK 388
+ +LIDMYAKCG IE A VFNS+ K L +WN +I G AMHGR + LF M+
Sbjct: 403 ASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMR 462
Query: 389 NAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRL 448
G PD ITF+G+L AC+H G+++ G F++M DY + P++EHYGCM+DLL +G
Sbjct: 463 KIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLF 522
Query: 449 AEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508
EA + + M +E D VIW +LL +C+++ NVEL E E L ++EP+NP ++V+LSNIY
Sbjct: 523 KEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIY 582
Query: 509 GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544
GRW +VA+ + + D G KK+PGCSSIE++ VV
Sbjct: 583 ASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 618
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/577 (35%), Positives = 327/577 (56%), Gaps = 42/577 (7%)
Query: 10 EQLETTKHLHQIQTQVVTSGLEKSDYITPRI--ITACAQLKQMTYARKMFDKITDQNVVS 67
E+ + + L Q ++ +G Y ++ + A + + YARK+FD+I N +
Sbjct: 38 ERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFA 97
Query: 68 WNAMFNGYAQNEFHRTVVVLFTQM-KKLDAMPNCFTFPIVLKSCVKINALREGEELHCLV 126
WN + YA + F M + PN +TFP ++K+ ++++L G+ LH +
Sbjct: 98 WNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMA 157
Query: 127 LKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSAR 186
+K+ +++FV +LI Y + +++A KVF + E++VV W SMING++ G A
Sbjct: 158 VKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217
Query: 187 CLFELAPERDV---------------------------------------ILWNTIVSGY 207
LF+ DV L N ++ Y
Sbjct: 218 ELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMY 277
Query: 208 IDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIG 267
++ +A++LFD M +KD ++W TML GYA + D E + + MP++++ +WN LI
Sbjct: 278 TKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALIS 337
Query: 268 GYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ 327
Y NG E L F + + + N T+V+ LSACA++GAL+ +W+H Y + +G +
Sbjct: 338 AYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIR 397
Query: 328 GNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEM 387
N V +ALI MY+KCG +E + +VFNS++ +D+ W+ +I GLAMHG G A+ +F++M
Sbjct: 398 MNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKM 457
Query: 388 KNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGR 447
+ A P+G+TF + CAC+H GLV+E S F M +Y IVP+ +HY C+VD+L R+G
Sbjct: 458 QEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGY 517
Query: 448 LAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507
L +AV F++ MPI +W LLG+C+++ N+ LAE+A RL ELEP+N V+LSNI
Sbjct: 518 LEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNI 577
Query: 508 YGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544
Y LG+W++V+ ++ MR TG KK PGCSSIE++ ++
Sbjct: 578 YAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMI 614
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHR3|PP403_ARATH Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana GN=PCMP-E37 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/526 (37%), Positives = 314/526 (59%), Gaps = 6/526 (1%)
Query: 17 HLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARK-MFDKITDQNVVSWNAMFNGY 75
HL+QI +++ GLE+ + I++ + +F+++ WN + GY
Sbjct: 25 HLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSPGTYLWNHLIKGY 84
Query: 76 AQN-EFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRAN 134
+ F TV +L M+ A P+ +TFP+V+K C +R G +H LVL+ GF +
Sbjct: 85 SNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKD 144
Query: 135 IFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPE 194
+ VGT+ ++ Y K + +A KVFGEM ERN V WT+++ Y+ G++ A+ +F+L PE
Sbjct: 145 VVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPE 204
Query: 195 RDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEM 254
R++ WN +V G + +++ A+KLFD+MPK+D+IS+ +M+ GYA GD+ + LFEE
Sbjct: 205 RNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEA 264
Query: 255 PERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFS 314
+V +W+ LI GYA NG E F M + V P++ +V ++SAC+++G +
Sbjct: 265 RGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKN-VKPDEFIMVGLMSACSQMGCFELC 323
Query: 315 KWV--HVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLA 372
+ V +++ N + + V ALIDM AKCG ++ A +F M +DL+++ +++ G+A
Sbjct: 324 EKVDSYLHQRMNKFSSHYVV-PALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMA 382
Query: 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI 432
+HG G+ A+ LF +M + G +PD + F IL C LVEEGL YF+ M YSI+
Sbjct: 383 IHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASP 442
Query: 433 EHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTE 492
+HY C+V+LL+R G+L EA + +K MP EA A W +LLG C ++ N E+AE+ L E
Sbjct: 443 DHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFE 502
Query: 493 LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSI 538
LEP++ ++V+LSNIY L RW DVA ++ M + G K+ G S I
Sbjct: 503 LEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRSWI 548
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (999), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/503 (39%), Positives = 296/503 (58%), Gaps = 11/503 (2%)
Query: 40 IITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMP- 98
+++ AQ + AR +FD++ ++N VSWNA+ + Y QN +LF + +
Sbjct: 163 MLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSW 222
Query: 99 NCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVF 158
NC +L VK + E + + ++ +I Y+ I+ A ++F
Sbjct: 223 NC-----LLGGFVKKKKIVEARQF----FDSMNVRDVVSWNTIITGYAQSGKIDEARQLF 273
Query: 159 GEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARK 218
E ++V WT+M++GYI + AR LF+ PER+ + WN +++GY+ M A++
Sbjct: 274 DESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKE 333
Query: 219 LFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEV 278
LFD MP ++V +WNTM++GYA G + E K LF++MP+R+ SW +I GY+ +G FE
Sbjct: 334 LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEA 393
Query: 279 LDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID 338
L F +M EG N ++ + LS CA + AL+ K +H GY+ VGNAL+
Sbjct: 394 LRLFVQMEREGGRL-NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452
Query: 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGIT 398
MY KCG IE A D+F M KD+++WNT+I+G + HG G AL F MK G PD T
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDAT 512
Query: 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458
+ +L AC+H GLV++G YF +M DY ++P +HY CMVDLL RAG L +A + +K M
Sbjct: 513 MVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM 572
Query: 459 PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518
P E DA IW LLG+ RV+ N ELAE A +++ +EP+N +V+LSN+Y GRW DV
Sbjct: 573 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 632
Query: 519 RIKVAMRDTGFKKLPGCSSIEVN 541
+++V MRD G KK+PG S IE+
Sbjct: 633 KLRVRMRDKGVKKVPGYSWIEIQ 655
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (996), Expect = e-107, Method: Compositional matrix adjust.
Identities = 207/602 (34%), Positives = 314/602 (52%), Gaps = 78/602 (12%)
Query: 17 HLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNV----------- 65
++ + V+ SG +I R+I A ++ + R++FDK+ +N+
Sbjct: 38 YVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLT 97
Query: 66 --------------------VSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPI 105
+WN+M +G+AQ++ + F M K + N ++F
Sbjct: 98 KLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFAS 157
Query: 106 VLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERN 165
VL +C +N + +G ++H L+ K+ F +++++G+AL+++YS + A +VF EM +RN
Sbjct: 158 VLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRN 217
Query: 166 VVVWTSMINGYISCGDIVSARCLFELAPE------------------------------- 194
VV W S+I + G V A +F++ E
Sbjct: 218 VVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHG 277
Query: 195 ---------RDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVE 245
D+IL N V Y + EAR +FD MP ++VI+ +M+SGYA +
Sbjct: 278 RVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTK 337
Query: 246 ECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSAC 305
+ +F +M ERNV SWN LI GY NG E L F +L V P + +L AC
Sbjct: 338 AARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC-LLKRESVCPTHYSFANILKAC 396
Query: 306 ARLGALDFSKWVHVYAEYNGY------QGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK 359
A L L HV+ +G+ + ++ VGN+LIDMY KCG +E VF M +
Sbjct: 397 ADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMER 456
Query: 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYF 419
D ++WN +I G A +G G AL LF EM +GE PD IT IG+L AC H G VEEG YF
Sbjct: 457 DCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYF 516
Query: 420 QSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKN 479
SM D+ + P +HY CMVDLL RAG L EA ++ MP++ D+VIW +LL +C+V++N
Sbjct: 517 SSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRN 576
Query: 480 VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIE 539
+ L + E+L E+EP N +V+LSN+Y +LG+W+DV ++ +MR G K PGCS I+
Sbjct: 577 ITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIK 636
Query: 540 VN 541
+
Sbjct: 637 IQ 638
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/533 (37%), Positives = 304/533 (57%), Gaps = 36/533 (6%)
Query: 16 KHLHQIQTQVVTSGLEKSDYITPRIITACAQL--KQMTYARKMFDKITDQNVVSWNAMFN 73
+ L QI + G++ Y T ++I CA + YAR++ + + +N +
Sbjct: 19 RALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVR 78
Query: 74 GYAQ-NEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFR 132
GY++ +E H +V V M+K P+ F+F V+K+ +LR G ++HC LK+G
Sbjct: 79 GYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLE 138
Query: 133 ANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELA 192
+++FVGT LI +Y CG + AR +F+
Sbjct: 139 SHLFVGTTLIGMYG-------------------------------GCGCVEFARKVFDEM 167
Query: 193 PERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFE 252
+ +++ WN +++ ++ AR++FD+M ++ SWN ML+GY G++E KR+F
Sbjct: 168 HQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFS 227
Query: 253 EMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312
EMP R+ SW+ +I G A+NG F E F+ + G + PN+ ++ VLSAC++ G+ +
Sbjct: 228 EMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAG-MSPNEVSLTGVLSACSQSGSFE 286
Query: 313 FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKD-LITWNTIISGL 371
F K +H + E GY V V NALIDMY++CG + A VF M K +++W ++I+GL
Sbjct: 287 FGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGL 346
Query: 372 AMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ 431
AMHG+G A+ LF+EM G PDGI+FI +L AC+H GL+EEG YF M Y I P+
Sbjct: 347 AMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPE 406
Query: 432 IEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLT 491
IEHYGCMVDL R+G+L +A DF+ +MPI A++W LLG+C + N+ELAE +RL
Sbjct: 407 IEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLN 466
Query: 492 ELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544
EL+P N + V+LSN Y G+WKDVA I+ +M KK S +EV + +
Sbjct: 467 ELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTM 519
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 206/579 (35%), Positives = 325/579 (56%), Gaps = 45/579 (7%)
Query: 10 EQLETTKHLHQIQTQVVTSGLEKSDYITPRIITACA--QLKQMTYARKMFDKITDQNVVS 67
E+ + HL QIQ Q++ +GL + + R+I CA + + + Y+ K+ I + N+ S
Sbjct: 61 EKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFS 120
Query: 68 WNAMFNGYAQNEFHRTVVVLFTQMKK---LDAMPNCFTFPIVLKSCVKINALREGEELHC 124
WN G++++E + +L+ QM + ++ P+ FT+P++ K C + G +
Sbjct: 121 WNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILG 180
Query: 125 LVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGY-------- 176
VLK V A I ++++ +E A KVF E R++V W +INGY
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEK 240
Query: 177 ------------------------ISC---GDIVSARCLFELAPERDVILWNTIVSGYID 209
SC GD+ + +E E + + +V+ +D
Sbjct: 241 AIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMD 300
Query: 210 V----RNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGL 265
+ ++ EAR++FD + K+ ++SW TM+SGYA G ++ ++LF++M E++V WN +
Sbjct: 301 MFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAM 360
Query: 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNG 325
IGG + L F+ M T P++ T++ LSAC++LGALD W+H Y E
Sbjct: 361 IGGSVQAKRGQDALALFQEMQTSN-TKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYS 419
Query: 326 YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFH 385
NV +G +L+DMYAKCG I A+ VF+ + T++ +T+ II GLA+HG + A+S F+
Sbjct: 420 LSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFN 479
Query: 386 EMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA 445
EM +AG PD ITFIG+L AC H G+++ G YF M +++ PQ++HY MVDLL RA
Sbjct: 480 EMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRA 539
Query: 446 GRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505
G L EA ++ MP+EADA +W LL CR++ NVEL E A ++L EL+P + +V+L
Sbjct: 540 GLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLD 599
Query: 506 NIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544
+YG+ W+D R + M + G +K+PGCSSIEVN +V
Sbjct: 600 GMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIV 638
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/562 (35%), Positives = 319/562 (56%), Gaps = 42/562 (7%)
Query: 20 QIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNE 79
QI +V G K ++ ++ A+ ++ ARK+FD+++++NVVSW +M GYA+ +
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214
Query: 80 FHRTVVVLFTQM-KKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVG 138
F + V LF +M + + PN T V+ +C K+ L GE+++ + +G N +
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274
Query: 139 TALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDV- 197
+AL+++Y AI+ A ++F E N+ + +M + Y+ G A +F L + V
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 198 ------------------ILWNTIVSGYIDVRNMIE---------------------ARK 218
ILW GY+ +RN E A +
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYV-LRNGFESWDNICNALIDMYMKCHRQDTAFR 393
Query: 219 LFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEV 278
+FD+M K V++WN++++GY NG+V+ FE MPE+N+ SWN +I G LF E
Sbjct: 394 IFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEA 453
Query: 279 LDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID 338
++ F M ++ V + T++++ SAC LGALD +KW++ Y E NG Q +V +G L+D
Sbjct: 454 IEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVD 513
Query: 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGIT 398
M+++CG E+A+ +FNS+ +D+ W I +AM G A+ LF +M G PDG+
Sbjct: 514 MFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVA 573
Query: 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458
F+G L AC+H GLV++G F SM + + P+ HYGCMVDLL RAG L EAV ++ M
Sbjct: 574 FVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDM 633
Query: 459 PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518
P+E + VIW +LL +CRV NVE+A A E++ L P+ ++V+LSN+Y GRW D+A
Sbjct: 634 PMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMA 693
Query: 519 RIKVAMRDTGFKKLPGCSSIEV 540
+++++M++ G +K PG SSI++
Sbjct: 694 KVRLSMKEKGLRKPPGTSSIQI 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 380 bits (976), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/524 (37%), Positives = 302/524 (57%), Gaps = 7/524 (1%)
Query: 25 VVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKIT--DQNVVSWNAMFNGYAQNEFHR 82
++ +E + I + + A + YARK+FD+ D + +S N+M Y + +
Sbjct: 1 MLRHAIETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLS-NSMIKAYLETRQYP 59
Query: 83 TVVVLFTQMKKLDAM-PNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTAL 141
L+ ++K P+ FTF + KSC + +G +LH + + GF A+++V T +
Sbjct: 60 DSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGV 119
Query: 142 IELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPE-RDVILW 200
+++Y+ + A F EM R+ V WT++I+GYI CG++ A LF+ P +DV+++
Sbjct: 120 VDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIY 179
Query: 201 NTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVF 260
N ++ G++ +M AR+LFD+M K VI+W TM+ GY N D++ ++LF+ MPERN+
Sbjct: 180 NAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLV 239
Query: 261 SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVY 320
SWN +IGGY N E + F+ M + P+D TI++VL A + GAL +W H +
Sbjct: 240 SWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCF 299
Query: 321 AEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGA 380
+ V V A++DMY+KCG IE A +F+ M K + +WN +I G A++G A
Sbjct: 300 VQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAA 359
Query: 381 LSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440
L LF M E PD IT + ++ AC H GLVEEG +F M + + +IEHYGCMVD
Sbjct: 360 LDLFVTMM-IEEKPDEITMLAVITACNHGGLVEEGRKWFHVMR-EMGLNAKIEHYGCMVD 417
Query: 441 LLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPAN 500
LL RAG L EA D + MP E + +I ++ L +C YK++E AE L++ ELEP+N N
Sbjct: 418 LLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGN 477
Query: 501 FVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544
+V+L N+Y RW D +K MR KK GCS IE+N +V
Sbjct: 478 YVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIV 521
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 589 | ||||||
| 225423995 | 623 | PREDICTED: pentatricopeptide repeat-cont | 0.910 | 0.860 | 0.710 | 0.0 | |
| 147806113 | 686 | hypothetical protein VITISV_030746 [Viti | 0.904 | 0.776 | 0.714 | 0.0 | |
| 224099379 | 538 | predicted protein [Populus trichocarpa] | 0.891 | 0.975 | 0.707 | 0.0 | |
| 357516905 | 758 | Pentatricopeptide repeat-containing prot | 0.949 | 0.737 | 0.629 | 0.0 | |
| 449531466 | 610 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.913 | 0.647 | 0.0 | |
| 449441542 | 652 | PREDICTED: pentatricopeptide repeat-cont | 0.945 | 0.854 | 0.647 | 0.0 | |
| 356559204 | 619 | PREDICTED: pentatricopeptide repeat-cont | 0.952 | 0.906 | 0.617 | 0.0 | |
| 297737809 | 481 | unnamed protein product [Vitis vinifera] | 0.650 | 0.796 | 0.756 | 1e-179 | |
| 255586679 | 515 | pentatricopeptide repeat-containing prot | 0.660 | 0.755 | 0.669 | 1e-171 | |
| 356499342 | 446 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.724 | 0.957 | 0.638 | 1e-160 |
| >gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/536 (71%), Positives = 456/536 (85%)
Query: 10 EQLETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWN 69
+ +T+K +HQIQ Q++ +G + ++YITP+++T CA LK+MTYAR++FD+I D N+ WN
Sbjct: 46 QSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWN 105
Query: 70 AMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKN 129
+MF GYAQ+E +R VV LF QMK +D PNCFTFP+VLKSC KINAL EGE++HC ++K
Sbjct: 106 SMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKC 165
Query: 130 GFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLF 189
GFR N FVGT LI++YS G + AYK+F EM ERNVV WTSMINGYI D+VSAR LF
Sbjct: 166 GFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLF 225
Query: 190 ELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKR 249
+LAPERDV+LWN +VSGYI+ +M+EARKLF +MP +DV+ WNT+L GYA NG+VE +
Sbjct: 226 DLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEG 285
Query: 250 LFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLG 309
LFEEMPERN+FSWN LIGGYA+NGLFFEVL +FKRML+E V PNDAT+VTVLSACARLG
Sbjct: 286 LFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLG 345
Query: 310 ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIIS 369
ALD KWVHVYAE +G +GNV VGNAL+DMYAKCGIIENA+ VF MDTKDLI+WNT+I
Sbjct: 346 ALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIG 405
Query: 370 GLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIV 429
GLAMH RGA AL+LF +MKNAG+ PDGITFIGILCACTHMGLVE+G +YFQSMA DY I+
Sbjct: 406 GLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIM 465
Query: 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALER 489
PQIEHYGCMVD+LARAGRL +A+ FV++MP+EAD VIWA LLG+CR+YKNVELAELAL+R
Sbjct: 466 PQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQR 525
Query: 490 LTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM 545
L ELEPKNPAN+VMLSNIYGD GRW+DVAR+KVAMRDTGFKKLPGCS IEVN+ V+
Sbjct: 526 LIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVV 581
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/533 (71%), Positives = 454/533 (85%)
Query: 13 ETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMF 72
+T+K +HQIQ Q++ +G + ++YITP+++T CA LK+MTYAR++FD+I D N+ WN+MF
Sbjct: 112 KTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMF 171
Query: 73 NGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFR 132
GYAQ+E +R VV LF QMK +D PNCFTFP+VLKSC KINAL EGE++HC ++K GFR
Sbjct: 172 RGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFR 231
Query: 133 ANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELA 192
N FVGT LI++YS G + AYK+F EM ERNVV WTSMINGYI D+VSAR LF+LA
Sbjct: 232 GNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLA 291
Query: 193 PERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFE 252
PERDV+LWN +VSGYI+ +M+EARKLF +MP +DV+ WNT+L GYA NG+VE + LFE
Sbjct: 292 PERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFE 351
Query: 253 EMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312
EMPERN+FSWN LIGGYA+NGLFFEVL +FKRML+E V PNDAT+VTVLSACARLGALD
Sbjct: 352 EMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALD 411
Query: 313 FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLA 372
KWVHVYAE +G +GNV VGNAL+DMYAKCGIIENA+ VF MDTKDLI+WNT+I GLA
Sbjct: 412 LGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLA 471
Query: 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI 432
MH RGA AL+LF +MKNAG+ PDGITFIGILCACTHMGLVE+G +YFQSMA DY I+PQI
Sbjct: 472 MHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQI 531
Query: 433 EHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTE 492
EHYGCMVD+LARAGRL +A FV++MP+EAD VIWA LLG+CR+YKNVELAELAL+RL E
Sbjct: 532 EHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIE 591
Query: 493 LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM 545
LEPKNPAN+VMLSNIYGD GRW+DVAR+KVAMRDTGFKKLPGCS IEVN+ V+
Sbjct: 592 LEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVV 644
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa] gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/527 (70%), Positives = 440/527 (83%), Gaps = 2/527 (0%)
Query: 50 MTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKS 109
M A K+FD+I + N WNAMF GY+QNE H+ V+VLF QMK LD MPNCFTFP++LKS
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60
Query: 110 CVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVW 169
CVKINAL+EGEE+HC V+K+GFRAN FV T LI++Y++G AI AAY+VFGEM ERNV+ W
Sbjct: 61 CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120
Query: 170 TSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVI 229
T+MINGYI+C D+V+AR LF+LAPERD++LWNT++SGYI+ +++I AR+LFD+MP KDV+
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVM 180
Query: 230 SWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEG 289
SWNT+L+GYA+NGDV C+RLFEEMPERNVFSWN LIGGY NG F EVL AFKRML +G
Sbjct: 181 SWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDG 240
Query: 290 RVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENA 349
V PNDAT+V VLSACARLGALD KWVHVYAE +GY+GNV V NAL+DMYAKCG++E A
Sbjct: 241 TVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETA 300
Query: 350 VDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHM 409
+DVF SMD KDLI+WNTII GLA+HG GA AL+LF MK AGE PDGITFIGILCACTHM
Sbjct: 301 LDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHM 360
Query: 410 GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWAN 469
GLVE+G SYF+SM DYSIVP+IEHYGC+VDLL RAG LA AVDF+++MPIEADAVIWA
Sbjct: 361 GLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAA 420
Query: 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGF 529
LLG+CRVYKNVELAELALE+L E EPKNPAN+VMLSNIYGD GRWKDVAR+KVAMRDTGF
Sbjct: 421 LLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGF 480
Query: 530 KKLPGCSSIEVNE--VVMLGCLSRELDRKSIVRAEANMIKLLPQNNH 574
KKLPGCS IEVN+ V R +++ I + KLL + +
Sbjct: 481 KKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTLTKLLRSSGY 527
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/561 (62%), Positives = 444/561 (79%), Gaps = 2/561 (0%)
Query: 16 KHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGY 75
+ LHQIQ Q+VT GLE +D++ P IT C++ K++ +ARK+FDKI N +WNAMF GY
Sbjct: 26 ERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPNTATWNAMFRGY 85
Query: 76 AQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANI 135
QN HR VVLF ++ ++ MPNCFTFP+++KSC K+ +REGEE+HC K+GF++N
Sbjct: 86 LQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNS 145
Query: 136 FVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPER 195
FV T+LI++YS +E AYKVFGEM ERNVVVWT++INGYI CGD+VS R LF+LAPER
Sbjct: 146 FVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPER 205
Query: 196 DVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMP 255
DV++W+ ++SGYI+ +NM AR+LFD+MP +D +SWN ML+GYA NG+VE +++F+EMP
Sbjct: 206 DVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMP 265
Query: 256 ERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSK 315
ERNVFSWNGLIGGY NGLF E L++FKRML EG V PND T+V VLSAC+RLGALD K
Sbjct: 266 ERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGK 325
Query: 316 WVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHG 375
WVHVYAE GY+GN+ VGN LIDMYAKCG+IENAV VFN +D KD+I+WNTII+GLA+HG
Sbjct: 326 WVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIHG 385
Query: 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHY 435
AL +F MK+ GE PDG+TF+GIL ACTHMGLV++G YF+SM YSIVPQIEHY
Sbjct: 386 HAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHY 445
Query: 436 GCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEP 495
GCMVDLL RAG L +A++F+++MPIE DAVIWA LLG+CR+YKNVE+AELAL+RL ELEP
Sbjct: 446 GCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACRLYKNVEIAELALQRLIELEP 505
Query: 496 KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM--LGCLSREL 553
NPANFVM+SNIY DLGR +DVAR+K+AMRDTGF+KLPGCS IE N+ V+ R
Sbjct: 506 NNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLDERHS 565
Query: 554 DRKSIVRAEANMIKLLPQNNH 574
+ +SI R + LL + +
Sbjct: 566 ETESIYRVLKGLTMLLRSHGY 586
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/559 (64%), Positives = 437/559 (78%), Gaps = 2/559 (0%)
Query: 13 ETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMF 72
+T L ++Q Q++T G + + Y+ P ++T+ LKQM +AR +FD D V WNA+
Sbjct: 36 KTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAIS 95
Query: 73 NGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFR 132
GY N F+R VV LF +MK +D PNCFTFP+VLKSC KI A EGEE+HC V+K G
Sbjct: 96 RGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLE 155
Query: 133 ANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELA 192
N FV T LI++YS G+AI +AYK+F M ERN+V WTSMI+GYI C + AR LF+LA
Sbjct: 156 GNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLA 215
Query: 193 PERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFE 252
PERDV+LWN +VSGYI++ +M ARKLFD MP +D +SWNTML+GYANNGDVE C++LFE
Sbjct: 216 PERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFE 275
Query: 253 EMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312
EMPERNVFSWNGLIGGYA+NG FFEVL FKRML +G V PNDAT+VTVLSACARLGALD
Sbjct: 276 EMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALD 335
Query: 313 FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLA 372
KWVHVYA G++G++ VGNALIDMY+KCG+IENA++VF SMD KDLITWN++I GLA
Sbjct: 336 LGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLA 395
Query: 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI 432
HG GA AL+LFH+MK GE PDGITFIG+LC+CTH+GLVEEG SYF SM +YSI PQI
Sbjct: 396 THGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQI 455
Query: 433 EHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTE 492
EHYGCMVDL RAG L A++FVKRMP+EADAVIWA LLG+CR+YKN++LAELAL++L
Sbjct: 456 EHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIV 515
Query: 493 LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM--LGCLS 550
LEPKNPAN+V+LSNIYGDLGRWKDVAR+K+ MRDTG KKLPGCS IEVN+ V+
Sbjct: 516 LEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDE 575
Query: 551 RELDRKSIVRAEANMIKLL 569
R K I ++KLL
Sbjct: 576 RHSQSKEIYGVLKGLMKLL 594
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/559 (64%), Positives = 437/559 (78%), Gaps = 2/559 (0%)
Query: 13 ETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMF 72
+T L ++Q Q++T G + + Y+ P ++T+ LKQM +AR +FD D V WNA+
Sbjct: 78 KTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAIS 137
Query: 73 NGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFR 132
GY N F+R VV LF +MK +D PNCFTFP+VLKSC KI A EGEE+HC V+K G
Sbjct: 138 RGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLE 197
Query: 133 ANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELA 192
N FV T LI++YS G+AI +AYK+F M ERN+V WTSMI+GYI C + AR LF+LA
Sbjct: 198 GNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDLA 257
Query: 193 PERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFE 252
PERDV+LWN +VSGYI++ +M ARKLFD MP +D +SWNTML+GYANNGDVE C++LFE
Sbjct: 258 PERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFE 317
Query: 253 EMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312
EMPERNVFSWNGLIGGYA+NG FFEVL FKRML +G V PNDAT+VTVLSACARLGALD
Sbjct: 318 EMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALD 377
Query: 313 FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLA 372
KWVHVYA G++G++ VGNALIDMY+KCG+IENA++VF SMD KDLITWN++I GLA
Sbjct: 378 LGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGLA 437
Query: 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI 432
HG GA AL+LFH+MK GE PDGITFIG+LC+CTH+GLVEEG SYF SM +YSI PQI
Sbjct: 438 THGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQI 497
Query: 433 EHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTE 492
EHYGCMVDL RAG L A++FVKRMP+EADAVIWA LLG+CR+YKN++LAELAL++L
Sbjct: 498 EHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIYKNIDLAELALQKLIV 557
Query: 493 LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM--LGCLS 550
LEPKNPAN+V+LSNIYGDLGRWKDVAR+K+ MRDTG KKLPGCS IEVN+ V+
Sbjct: 558 LEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDE 617
Query: 551 RELDRKSIVRAEANMIKLL 569
R K I ++KLL
Sbjct: 618 RHSQSKEIYGVLKGLMKLL 636
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/575 (61%), Positives = 436/575 (75%), Gaps = 14/575 (2%)
Query: 14 TTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFN 73
T LHQIQ Q+VT GLE +DY+TP ITACA+L + AR++FDK N +WNAMF
Sbjct: 34 TCVRLHQIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTAQPNGATWNAMFR 93
Query: 74 GYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRA 133
GYAQ H VVVLF +M + A PNCFTFP+V+KSC NA +EGEE+HC+V K GF++
Sbjct: 94 GYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEVHCVVAKRGFKS 153
Query: 134 NIFVGTALIELYST--GKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFEL 191
N FVG ALI +YS G + AYKVF EM ++NV WT+++ +++C D+VSAR LF+L
Sbjct: 154 NTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARRLFDL 213
Query: 192 APERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLF 251
AP+RDV+LWN +VSGYI++ +M+ AR+LFD+MP +DV+SWNT+LSGYA NG+VE +LF
Sbjct: 214 APQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLF 273
Query: 252 EEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRML----------TEGRVFPNDATIVTV 301
EEMP RNV+SWNGLIGGY NGLF E L+ FKRML ++G V PND T+V V
Sbjct: 274 EEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAV 333
Query: 302 LSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDL 361
L+AC+RLG L+ KWVHVYAE GY+GN+ VGNALIDMYAKCG+IE A+DVF+ +D KD+
Sbjct: 334 LTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDI 393
Query: 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQS 421
ITWNTII+GLAMHG A ALSLF MK AGE PDG+TF+GIL ACTHMGLV GL +FQS
Sbjct: 394 ITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQS 453
Query: 422 MAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVE 481
M DYSIVPQIEHYGCMVDLL RAG + +AVD V++MP+E DAVIWA LLG+CR+YKNVE
Sbjct: 454 MVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAALLGACRMYKNVE 513
Query: 482 LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN 541
+AELAL+RL ELEP NP NFVM+SNIY DLGR +DVAR+KVAMRDTGF+K+PGCS I N
Sbjct: 514 MAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCN 573
Query: 542 E--VVMLGCLSRELDRKSIVRAEANMIKLLPQNNH 574
+ V R + SI RA + LL + +
Sbjct: 574 DSMVEFYSLDERHPETDSIYRALQGLTILLRSHGY 608
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-179, Method: Compositional matrix adjust.
Identities = 298/394 (75%), Positives = 345/394 (87%)
Query: 152 EAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVR 211
E+ ++F EM ERNVV WTSMINGYI D+VSAR LF+LAPERDV+LWN +VSGYI+
Sbjct: 30 ESYREIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGG 89
Query: 212 NMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYAN 271
+M+EARKLF +MP +DV+ WNT+L GYA NG+VE + LFEEMPERN+FSWN LIGGYA+
Sbjct: 90 DMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAH 149
Query: 272 NGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVC 331
NGLFFEVL +FKRML+E V PNDAT+VTVLSACARLGALD KWVHVYAE +G +GNV
Sbjct: 150 NGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVY 209
Query: 332 VGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAG 391
VGNAL+DMYAKCGIIENA+ VF MDTKDLI+WNT+I GLAMH RGA AL+LF +MKNAG
Sbjct: 210 VGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAG 269
Query: 392 EMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEA 451
+ PDGITFIGILCACTHMGLVE+G +YFQSMA DY I+PQIEHYGCMVD+LARAGRL +A
Sbjct: 270 QKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQA 329
Query: 452 VDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDL 511
+ FV++MP+EAD VIWA LLG+CR+YKNVELAELAL+RL ELEPKNPAN+VMLSNIYGD
Sbjct: 330 MAFVRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDA 389
Query: 512 GRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM 545
GRW+DVAR+KVAMRDTGFKKLPGCS IEVN+ V+
Sbjct: 390 GRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVV 423
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 275/411 (66%), Positives = 343/411 (83%)
Query: 13 ETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMF 72
+T HLHQIQ+ ++ GL+ +DYITP+IIT+ A K+M +A K+FD+I + NV +WNAM
Sbjct: 77 KTLNHLHQIQSHIINHGLQFNDYITPKIITSFALFKRMRHAHKLFDQIPEPNVSNWNAML 136
Query: 73 NGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFR 132
GY+ N+ HR V+VLF +M +D +PNCF+FPIV+KS VKINA +EGEELHC V+K+G R
Sbjct: 137 KGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVKINAFKEGEELHCFVIKSGCR 196
Query: 133 ANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELA 192
AN FVGT LI+LYS+G+ I +AY+VFGEM ERNVV WTSMI G+I C DI +AR LFELA
Sbjct: 197 ANPFVGTMLIDLYSSGRMIVSAYRVFGEMIERNVVAWTSMIKGFILCNDIETARRLFELA 256
Query: 193 PERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFE 252
P+RDV+LWN ++SGYID+ +++ A++LF +MP KDV+SWNT+L+GYAN GD+E C+RLFE
Sbjct: 257 PQRDVVLWNIMISGYIDIGDLVRAQELFHKMPNKDVMSWNTLLNGYANGGDIEACERLFE 316
Query: 253 EMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312
EMPERNVFSWNGLIGGYA++G F EVL +FKRML +G V PNDAT+VTVLSACARLGALD
Sbjct: 317 EMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDATLVTVLSACARLGALD 376
Query: 313 FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLA 372
KWVH+YA+ NGY+GNV +GNALIDMYAKCG +ENA+ VF S+D KDLI+WNT+I GLA
Sbjct: 377 LGKWVHMYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKSLDKKDLISWNTLIGGLA 436
Query: 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMA 423
+HGR A AL LF MK+AGE PDGITF+G+LCACTHMGLV++G SYFQSM
Sbjct: 437 VHGRAADALYLFSRMKDAGEKPDGITFLGVLCACTHMGLVDDGFSYFQSMT 487
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g29230-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 274/429 (63%), Positives = 334/429 (77%), Gaps = 2/429 (0%)
Query: 148 GKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGY 207
G + AYKVF EM ++NV WT+++ +++C D+VSAR LF+LAP+ DV+LWN IVSGY
Sbjct: 7 GVFVADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNVIVSGY 66
Query: 208 IDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIG 267
I++ +M+ AR+LFD+MP DV+SWNT+LSGYANNG+VE ++FEEMP RNV+SWNGLIG
Sbjct: 67 IELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLIG 126
Query: 268 GYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ 327
GY NGLF E L+ FKRML +G V PND T+V VLSAC+RLG L+ KWVHVYA+ GY+
Sbjct: 127 GYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYK 186
Query: 328 GNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEM 387
GN+ VGNALIDMYAKCG+IE A+DVF+ +D KD+ITWNTII+ LAMH A ALSLF M
Sbjct: 187 GNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGM 246
Query: 388 KNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGR 447
K AGE PDG+TF+GIL ACTHMGLV G +FQSM DY IVPQIEHYGCMVDLL RAG
Sbjct: 247 KRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGL 306
Query: 448 LAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507
+ +AVD V++MP+E D VIWA LLG+CR YKNVE+AELAL+RL ELEP NP NFVMLSNI
Sbjct: 307 INQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIELEPNNPGNFVMLSNI 366
Query: 508 YGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM--LGCLSRELDRKSIVRAEANM 565
Y DLGR +DVAR+KVAMRDTGF+K+PGCS I N+ V+ R + SI RA +
Sbjct: 367 YKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSVVEFYSLDERHPETDSIYRALQGL 426
Query: 566 IKLLPQNNH 574
LL + +
Sbjct: 427 TILLRSHGY 435
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 589 | ||||||
| TAIR|locus:2010012 | 474 | AT1G13410 "AT1G13410" [Arabido | 0.665 | 0.827 | 0.636 | 1.2e-136 | |
| TAIR|locus:2094812 | 600 | AT3G29230 "AT3G29230" [Arabido | 0.886 | 0.87 | 0.381 | 3.1e-106 | |
| TAIR|locus:2151694 | 550 | AT5G37570 "AT5G37570" [Arabido | 0.882 | 0.945 | 0.366 | 1.2e-97 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.809 | 0.610 | 0.4 | 6.8e-95 | |
| TAIR|locus:2054966 | 555 | AHG11 "ABA hypersensitive germ | 0.869 | 0.922 | 0.368 | 9e-93 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.604 | 0.666 | 0.436 | 2.5e-88 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.891 | 0.766 | 0.337 | 5.4e-86 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.901 | 0.609 | 0.336 | 5.6e-84 | |
| TAIR|locus:2027554 | 704 | AT1G56690 [Arabidopsis thalian | 0.840 | 0.703 | 0.339 | 1.2e-83 | |
| TAIR|locus:2080727 | 623 | MEF10 "mitochondrial RNA editi | 0.799 | 0.756 | 0.367 | 1.2e-83 |
| TAIR|locus:2010012 AT1G13410 "AT1G13410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1338 (476.1 bits), Expect = 1.2e-136, P = 1.2e-136
Identities = 250/393 (63%), Positives = 309/393 (78%)
Query: 151 IEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDV 210
I +A KVF EM E+NVV+WTSMINGY+ D+VSAR F+L+PERD++LWNT++SGYI++
Sbjct: 44 IASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEM 103
Query: 211 RNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYA 270
NM+EAR LFDQMP +DV+SWNT+L GYAN GD+E C+R+F++MPERNVFSWNGLI GYA
Sbjct: 104 GNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYA 163
Query: 271 NNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQG-N 329
NG EVL +FKRM+ EG V PNDAT+ VLSACA+LGA DF KWVH Y E GY +
Sbjct: 164 QNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVD 223
Query: 330 VCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKN 389
V V NALIDMY KCG IE A++VF + +DLI+WNT+I+GLA HG G AL+LFHEMKN
Sbjct: 224 VNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKN 283
Query: 390 AGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA 449
+G PD +TF+G+LCAC HMGLVE+GL+YF SM D+SI+P+IEH GC+VDLL+RAG L
Sbjct: 284 SGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLT 343
Query: 450 EAVDFVKRMPIEADAVIWANLLGSCRVYKNVXXXXXXXXXXXXXXPKNPANFVMLSNIYG 509
+AV+F+ +MP++ADAVIWA LLG+ +VYK V P+NPANFVMLSNIYG
Sbjct: 344 QAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYG 403
Query: 510 DLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542
D GR+ D AR+KVAMRDTGFKK G S IE ++
Sbjct: 404 DAGRFDDAARLKVAMRDTGFKKEAGVSWIETDD 436
|
|
| TAIR|locus:2094812 AT3G29230 "AT3G29230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
Identities = 201/527 (38%), Positives = 317/527 (60%)
Query: 20 QIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNE 79
Q+ Q++ L + +I P++I+A + +Q A ++F+++ + NV N++ +AQN
Sbjct: 37 QLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNS 96
Query: 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGT 139
+F++M++ + FT+P +LK+C + L + +H + K G ++I+V
Sbjct: 97 QPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPN 156
Query: 140 ALIELYST--GKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDV 197
ALI+ YS G + A K+F +M ER+ V W SM+ G + G++ AR LF+ P+RD+
Sbjct: 157 ALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDL 216
Query: 198 ILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMP-- 255
I WNT++ GY R M +A +LF++MP+++ +SW+TM+ GY+ GD+E + +F++MP
Sbjct: 217 ISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLP 276
Query: 256 ERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSK 315
+NV +W +I GYA GL E +M+ G F + A ++++L+AC G L
Sbjct: 277 AKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKF-DAAAVISILAACTESGLLSLGM 335
Query: 316 WVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHG 375
+H + + N V NAL+DMYAKCG ++ A DVFN + KDL++WNT++ GL +HG
Sbjct: 336 RIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHG 395
Query: 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHY 435
G A+ LF M+ G PD +TFI +LC+C H GL++EG+ YF SM Y +VPQ+EHY
Sbjct: 396 HGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHY 455
Query: 436 GCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVXXXXXXXXXXXXXXP 495
GC+VDLL R GRL EA+ V+ MP+E + VIW LLG+CR++ V P
Sbjct: 456 GCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLVKLDP 515
Query: 496 KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542
+P N+ +LSNIY W+ VA I+ M+ G +K G SS+E+ +
Sbjct: 516 CDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELED 562
|
|
| TAIR|locus:2151694 AT5G37570 "AT5G37570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 193/526 (36%), Positives = 311/526 (59%)
Query: 17 HLHQIQTQVVTSGLEKS-DYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGY 75
HL+QI +++ GLE+ + I+ I ++ + ++Y+ +F+++ WN + GY
Sbjct: 25 HLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSPGTYLWNHLIKGY 84
Query: 76 AQNE-FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRAN 134
+ F TV +L M+ A P+ +TFP+V+K C +R G +H LVL+ GF +
Sbjct: 85 SNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSVHGLVLRIGFDKD 144
Query: 135 IFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPE 194
+ VGT+ ++ Y K + +A KVFGEM ERN V WT+++ Y+ G++ A+ +F+L PE
Sbjct: 145 VVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGELEEAKSMFDLMPE 204
Query: 195 RDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEM 254
R++ WN +V G + +++ A+KLFD+MPK+D+IS+ +M+ GYA GD+ + LFEE
Sbjct: 205 RNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKGGDMVSARDLFEEA 264
Query: 255 PERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFS 314
+V +W+ LI GYA NG E F M + V P++ +V ++SAC+++G +
Sbjct: 265 RGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKN-VKPDEFIMVGLMSACSQMGCFELC 323
Query: 315 KWV--HVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLA 372
+ V +++ N + + V ALIDM AKCG ++ A +F M +DL+++ +++ G+A
Sbjct: 324 EKVDSYLHQRMNKFSSHYVVP-ALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMA 382
Query: 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI 432
+HG G+ A+ LF +M + G +PD + F IL C LVEEGL YF+ M YSI+
Sbjct: 383 IHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASP 442
Query: 433 EHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVXXXXXXXXXXXX 492
+HY C+V+LL+R G+L EA + +K MP EA A W +LLG C ++ N
Sbjct: 443 DHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEVVARHLFE 502
Query: 493 XXPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSI 538
P++ ++V+LSNIY L RW DVA ++ M + G K+ G S I
Sbjct: 503 LEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRSWI 548
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 196/490 (40%), Positives = 281/490 (57%)
Query: 53 ARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMP-NCFTFPIVLKS-C 110
AR +FD++ ++N VSWNA+ + Y QN +LF + + NC V K
Sbjct: 176 ARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKI 235
Query: 111 VKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWT 170
V+ + + +V N I G A +GK I+ A ++F E ++V WT
Sbjct: 236 VEARQFFDSMNVRDVVSWN----TIITGYA-----QSGK-IDEARQLFDESPVQDVFTWT 285
Query: 171 SMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVIS 230
+M++GYI + AR LF+ PER+ + WN +++GY+ M A++LFD MP ++V +
Sbjct: 286 AMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVST 345
Query: 231 WNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGR 290
WNTM++GYA G + E K LF++MP+R+ SW +I GY+ +G FE L F +M EG
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG 405
Query: 291 VFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAV 350
N ++ + LS CA + AL+ K +H GY+ VGNAL+ MY KCG IE A
Sbjct: 406 RL-NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAN 464
Query: 351 DVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMG 410
D+F M KD+++WNT+I+G + HG G AL F MK G PD T + +L AC+H G
Sbjct: 465 DLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTG 524
Query: 411 LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANL 470
LV++G YF +M DY ++P +HY CMVDLL RAG L +A + +K MP E DA IW L
Sbjct: 525 LVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTL 584
Query: 471 LGSCRVYKNVXXXXXXXXXXXXXXPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFK 530
LG+ RV+ N P+N +V+LSN+Y GRW DV +++V MRD G K
Sbjct: 585 LGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVK 644
Query: 531 KLPGCSSIEV 540
K+PG S IE+
Sbjct: 645 KVPGYSWIEI 654
|
|
| TAIR|locus:2054966 AHG11 "ABA hypersensitive germination 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 191/519 (36%), Positives = 291/519 (56%)
Query: 30 LEKSDYITPRIITACAQLKQMTYARKMFDKIT--DQNVVSWNAMFNGYAQNEFHRTVVVL 87
+E + I + + A + YARK+FD+ D + +S N+M Y + + L
Sbjct: 6 IETNVQIFTKFLVISASAVGIGYARKLFDQRPQRDDSFLS-NSMIKAYLETRQYPDSFAL 64
Query: 88 FTQMKKLDAM-PNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYS 146
+ ++K P+ FTF + KSC + +G +LH + + GF A+++V T ++++Y+
Sbjct: 65 YRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYA 124
Query: 147 TGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPE-RDVILWNTIVS 205
+ A F EM R+ V WT++I+GYI CG++ A LF+ P +DV+++N ++
Sbjct: 125 KFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMD 184
Query: 206 GYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGL 265
G++ +M AR+LFD+M K VI+W TM+ GY N D++ ++LF+ MPERN+ SWN +
Sbjct: 185 GFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTM 244
Query: 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNG 325
IGGY N E + F+ M + P+D TI++VL A + GAL +W H + +
Sbjct: 245 IGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKK 304
Query: 326 YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFH 385
V V A++DMY+KCG IE A +F+ M K + +WN +I G A++G AL LF
Sbjct: 305 LDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFV 364
Query: 386 EMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA 445
M E PD IT + ++ AC H GLVEEG +F M + + +IEHYGCMVDLL RA
Sbjct: 365 TMM-IEEKPDEITMLAVITACNHGGLVEEGRKWFHVMR-EMGLNAKIEHYGCMVDLLGRA 422
Query: 446 GRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVXXXXXXXXXXXXXXPKNPANFVMLS 505
G L EA D + MP E + +I ++ L +C YK++ P+N N+V+L
Sbjct: 423 GSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLR 482
Query: 506 NIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544
N+Y RW D +K MR KK GCS IE+N +V
Sbjct: 483 NLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIV 521
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 156/357 (43%), Positives = 239/357 (66%)
Query: 188 LFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEEC 247
L + P V+ N ++ Y+ ++++A K+FD+M ++DVISWN++LSGYA G +++
Sbjct: 135 LCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKA 194
Query: 248 KRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR 307
K LF M ++ + SW +I GY G + E +D F+ M G + P++ ++++VL +CA+
Sbjct: 195 KGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG-IEPDEISLISVLPSCAQ 253
Query: 308 LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTI 367
LG+L+ KW+H+YAE G+ V NALI+MY+KCG+I A+ +F M+ KD+I+W+T+
Sbjct: 254 LGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTM 313
Query: 368 ISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYS 427
ISG A HG GA+ F+EM+ A P+GITF+G+L AC+H+G+ +EGL YF M DY
Sbjct: 314 ISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQ 373
Query: 428 IVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVXXXXXXX 487
I P+IEHYGC++D+LARAG+L AV+ K MP++ D+ IW +LL SCR N+
Sbjct: 374 IEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAM 433
Query: 488 XXXXXXXPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544
P++ N+V+L+NIY DLG+W+DV+R++ +R+ KK PG S IEVN +V
Sbjct: 434 DHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIV 490
|
|
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 181/536 (33%), Positives = 297/536 (55%)
Query: 14 TTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFN 73
T HL QI ++ L ++ ++ +Q Y+ +F N+ +N++ N
Sbjct: 25 TVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLIN 84
Query: 74 GYAQNE-FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFR 132
G+ N FH T+ LF ++K + FTFP+VLK+C + ++ + G +LH LV+K GF
Sbjct: 85 GFVNNHLFHETLD-LFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFN 143
Query: 133 ANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLF--- 189
++ T+L+ +YS + A+K+F E+ +R+VV WT++ +GY + G A LF
Sbjct: 144 HDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKM 203
Query: 190 -ELAPERDVILWNTIVSGYIDVRNMIEAR---KLFDQMP-KKDVISWNTMLSGYANNGDV 244
E+ + D ++S + V ++ K ++M +K+ T+++ YA G +
Sbjct: 204 VEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKM 263
Query: 245 EECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSA 304
E+ + +F+ M E+++ +W+ +I GYA+N E ++ F +ML E + P+ +IV LS+
Sbjct: 264 EKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQEN-LKPDQFSIVGFLSS 322
Query: 305 CARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITW 364
CA LGALD +W + + + N+ + NALIDMYAKCG + +VF M KD++
Sbjct: 323 CASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382
Query: 365 NTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM 424
N ISGLA +G + ++F + + G PDG TF+G+LC C H GL+++GL +F +++
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442
Query: 425 DYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVXXXX 484
Y++ +EHYGCMVDL RAG L +A + MP+ +A++W LL CR+ K+
Sbjct: 443 VYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAE 502
Query: 485 XXXXXXXXXXPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEV 540
P N N+V LSNIY GRW + A ++ M G KK+PG S IE+
Sbjct: 503 TVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIEL 558
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 183/544 (33%), Positives = 299/544 (54%)
Query: 9 SEQLETTKHLH---QIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNV 65
S+ + + +H Q+ ++ SG + + + ++ + +++ ARK+FD++T+++V
Sbjct: 202 SKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDV 261
Query: 66 VSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCL 125
+SWN++ NGY N + +F QM + T V C + G +H +
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI 321
Query: 126 VLKNGF-RANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVS 184
+K F R + F T L+++YS +++A VF EM +R+VV +TSMI GY G
Sbjct: 322 GVKACFSREDRFCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 380
Query: 185 ARCLFELAPER----DVILWNTIVSGYIDVRNMIEARKLFDQMPKKD----VISWNTMLS 236
A LFE E DV +++ R + E +++ + + + D + N ++
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 440
Query: 237 GYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA 296
YA G ++E + +F EM +++ SWN +IGGY+ N E L F +L E R P++
Sbjct: 441 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 500
Query: 297 TIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSM 356
T+ VL ACA L A D + +H Y NGY + V N+L+DMYAKCG + A +F+ +
Sbjct: 501 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 560
Query: 357 DTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGL 416
+KDL++W +I+G MHG G A++LF++M+ AG D I+F+ +L AC+H GLV+EG
Sbjct: 561 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 620
Query: 417 SYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRV 476
+F M + I P +EHY C+VD+LAR G L +A F++ MPI DA IW LL CR+
Sbjct: 621 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680
Query: 477 YKNVXXXXXXXXXXXXXXPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCS 536
+ +V P+N +V+++NIY + +W+ V R++ + G +K PGCS
Sbjct: 681 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740
Query: 537 SIEV 540
IE+
Sbjct: 741 WIEI 744
|
|
| TAIR|locus:2027554 AT1G56690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 172/506 (33%), Positives = 283/506 (55%)
Query: 40 IITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPN 99
+++ + + + AR +F+ + ++NVVSW AM GY Q LF +M + + +
Sbjct: 85 LVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV-- 142
Query: 100 CFTFPIVLKSCVKINALREGEELHCLV-LKNGFRANIFVGTALIELYSTGKAIEAAYKVF 158
++ ++ + + + +L+ ++ +K+ + +G E G+ EA +F
Sbjct: 143 --SWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCRE----GRVDEARL-IF 195
Query: 159 GEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARK 218
EM ERNVV WT+MI GY + AR LFE+ PE+ + W +++ GY + +A +
Sbjct: 196 DEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEE 255
Query: 219 LFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEV 278
F+ MP K VI+ N M+ G+ G++ + +R+F+ M +R+ +W G+I Y G E
Sbjct: 256 FFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEA 315
Query: 279 LDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID 338
LD F +M +G V P+ +++++LS CA L +L + + VH + + +V V + L+
Sbjct: 316 LDLFAQMQKQG-VRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMT 374
Query: 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGIT 398
MY KCG + A VF+ +KD+I WN+IISG A HG G AL +FHEM ++G MP+ +T
Sbjct: 375 MYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVT 434
Query: 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458
I IL AC++ G +EEGL F+SM + + P +EHY C VD+L RAG++ +A++ ++ M
Sbjct: 435 LIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESM 494
Query: 459 PIEADAVIWANLLGSCRVYKNVXXXXXXXXXXXXXXPKNPANFVMLSNIYGDLGRWKDVA 518
I+ DA +W LLG+C+ + + P N +V+LS+I +W DVA
Sbjct: 495 TIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVA 554
Query: 519 RIKVAMRDTGFKKLPGCSSIEVNEVV 544
++ MR K PGCS IEV + V
Sbjct: 555 VVRKNMRTNNVSKFPGCSWIEVGKKV 580
|
|
| TAIR|locus:2080727 MEF10 "mitochondrial RNA editing factor 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 838 (300.0 bits), Expect = 1.2e-83, P = 1.2e-83
Identities = 177/482 (36%), Positives = 264/482 (54%)
Query: 68 WNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVL 127
WN A + L+ M + + P+ F+FP +LKSC ++ G++LHC V
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 128 KNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNV--VVWTSMINGYISCGDIVSA 185
K G FV TALI +Y + A KVF E + + V + ++I+GY + + A
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 186 RCLFELAPERDVILWNTIVSGYIDVRNMIE----ARKLFDQMPK----KDVISWNTMLSG 237
+F E V + + + G + + + E R L Q K +V N+ ++
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200
Query: 238 YANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDAT 297
Y G VE +RLF+EMP + + +WN +I GY+ NGL ++VL+ +++M + G V P+ T
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSG-VCPDPFT 259
Query: 298 IVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD 357
+V+VLS+CA LGA V E NG+ NV V NA I MYA+CG + A VF+ M
Sbjct: 260 LVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319
Query: 358 TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLS 417
K L++W +I MHG G L LF +M G PDG F+ +L AC+H GL ++GL
Sbjct: 320 VKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLE 379
Query: 418 YFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVY 477
F++M +Y + P EHY C+VDLL RAGRL EA++F++ MP+E D +W LLG+C+++
Sbjct: 380 LFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIH 439
Query: 478 KNVXXXXXXXXXXXXXXPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSS 537
KNV P N +V++SNIY D + + RI+V MR+ F+K PG S
Sbjct: 440 KNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSY 499
Query: 538 IE 539
+E
Sbjct: 500 VE 501
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 589 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-125 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-89 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-61 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-47 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-41 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-36 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 389 bits (1000), Expect = e-125
Identities = 191/536 (35%), Positives = 307/536 (57%), Gaps = 16/536 (2%)
Query: 17 HLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYA 76
H H VV G E + +IT + + AR +FD++ ++ +SWNAM +GY
Sbjct: 210 HAH-----VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYF 264
Query: 77 QNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIF 136
+N + LF M++L P+ T V+ +C + R G E+H V+K GF ++
Sbjct: 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324
Query: 137 VGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERD 196
V +LI++Y + + A KVF M+ ++ V WT+MI+GY G A + L + +
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384
Query: 197 V----ILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISW----NTMLSGYANNGDVEECK 248
V I +++S + ++ KL + +K +IS+ N ++ Y+ +++
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444
Query: 249 RLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARL 308
+F +PE++V SW +I G N FE L F++ML + PN T++ LSACAR+
Sbjct: 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML--LTLKPNSVTLIAALSACARI 502
Query: 309 GALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTII 368
GAL K +H + G + + NAL+D+Y +CG + A + FNS + KD+++WN ++
Sbjct: 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-KDVVSWNILL 561
Query: 369 SGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSI 428
+G HG+G+ A+ LF+ M +G PD +TFI +LCAC+ G+V +GL YF SM YSI
Sbjct: 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621
Query: 429 VPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALE 488
P ++HY C+VDLL RAG+L EA +F+ +MPI D +W LL +CR++++VEL ELA +
Sbjct: 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQ 681
Query: 489 RLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544
+ EL+P + +++L N+Y D G+W +VAR++ MR+ G PGCS +EV V
Sbjct: 682 HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKV 737
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 289 bits (740), Expect = 7e-89
Identities = 156/516 (30%), Positives = 248/516 (48%), Gaps = 94/516 (18%)
Query: 25 VVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTV 84
V +SG E Y+ R++ + + AR++FD++ ++N+ SW + G +R
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREA 208
Query: 85 VVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIEL 144
LF +M + + TF ++L++ + + R G++LHC VLK G + FV ALI++
Sbjct: 209 FALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDM 268
Query: 145 YSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIV 204
YS CGDI ARC
Sbjct: 269 YS-------------------------------KCGDIEDARC----------------- 280
Query: 205 SGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNG 264
+FD MP+K ++WN+ML+GYA +G EE L+ EM + V
Sbjct: 281 --------------VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV----- 321
Query: 265 LIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYN 324
+D F T ++ +RL L+ +K H
Sbjct: 322 -------------SIDQF--------------TFSIMIRIFSRLALLEHAKQAHAGLIRT 354
Query: 325 GYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLF 384
G+ ++ AL+D+Y+K G +E+A +VF+ M K+LI+WN +I+G HGRG A+ +F
Sbjct: 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF 414
Query: 385 HEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR 444
M G P+ +TF+ +L AC + GL E+G FQSM+ ++ I P+ HY CM++LL R
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
Query: 445 AGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML 504
G L EA ++R P + +WA LL +CR++KN+EL LA E+L + P+ N+V+L
Sbjct: 475 EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534
Query: 505 SNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEV 540
N+Y GR + A++ ++ G P C+ IEV
Sbjct: 535 LNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 2e-61
Identities = 125/402 (31%), Positives = 193/402 (48%), Gaps = 72/402 (17%)
Query: 53 ARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVK 112
A +F K+ ++++ SWN + GYA+ + + L+ +M P+ +TFP VL++C
Sbjct: 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199
Query: 113 INALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSM 172
I L G E+H V++ GF ++ V ALI +Y
Sbjct: 200 IPDLARGREVHAHVVRFGFELDVDVVNALITMY--------------------------- 232
Query: 173 INGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLF----------DQ 222
+ CGD+VSAR +F+ P RD I WN ++SGY + +E +LF D
Sbjct: 233 ----VKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288
Query: 223 MPKKDVIS-----------------------------WNTMLSGYANNGDVEECKRLFEE 253
M VIS N+++ Y + G E +++F
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348
Query: 254 MPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDF 313
M ++ SW +I GY NGL + L+ + M + V P++ TI +VLSACA LG LD
Sbjct: 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLDV 407
Query: 314 SKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAM 373
+H AE G V V NALI+MY+KC I+ A++VF+++ KD+I+W +II+GL +
Sbjct: 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467
Query: 374 HGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEG 415
+ R AL F +M P+ +T I L AC +G + G
Sbjct: 468 NNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCG 508
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 9e-47
Identities = 106/410 (25%), Positives = 187/410 (45%), Gaps = 24/410 (5%)
Query: 87 LFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYS 146
L M++L + + + + C A+ EG + L + + +G A++ ++
Sbjct: 73 LLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132
Query: 147 TGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFE----LAPERDVILWNT 202
+ A+ VFG+M ER++ W ++ GY G A CL+ DV +
Sbjct: 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192
Query: 203 IVSGYIDVRNMIEARKL------FDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE 256
++ + ++ R++ F DV+ N +++ Y GDV + +F+ MP
Sbjct: 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVV--NALITMYVKCGDVVSARLVFDRMPR 250
Query: 257 RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKW 316
R+ SWN +I GY NG E L+ F M E V P+ TI +V+SAC LG +
Sbjct: 251 RDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGRE 309
Query: 317 VHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGR 376
+H Y G+ +V V N+LI MY G A VF+ M+TKD ++W +ISG +G
Sbjct: 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369
Query: 377 GAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQ----SMAMDYSIVPQI 432
AL + M+ PD IT +L AC +G ++ G+ + + Y +V
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN- 428
Query: 433 EHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLL-GSCRVYKNVE 481
++++ ++ + +A++ +P E D + W +++ G + E
Sbjct: 429 ----ALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 5e-41
Identities = 90/314 (28%), Positives = 151/314 (48%), Gaps = 18/314 (5%)
Query: 171 SMINGYISCGDIVSARCLFELAPER-----DVILWNTIVSGYIDVRNMIEARKLFDQMPK 225
S I ++CG A LFE+ ++ +V I ++++ + ++ +
Sbjct: 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151
Query: 226 K----DVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDA 281
D N +L + G + + +RLF+EMPERN+ SW +IGG + G + E
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFAL 211
Query: 282 FKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYA 341
F+ M +G T V +L A A LG+ + +H G G+ V ALIDMY+
Sbjct: 212 FREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270
Query: 342 KCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIG 401
KCG IE+A VF+ M K + WN++++G A+HG AL L++EM+++G D TF
Sbjct: 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330
Query: 402 ILCACTHMGLVEEGLSYFQSM---AMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458
++ + + L+E + IV +VDL ++ GR+ +A + RM
Sbjct: 331 MIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT----ALVDLYSKWGRMEDARNVFDRM 386
Query: 459 PIEADAVIWANLLG 472
P + + + W L+
Sbjct: 387 PRK-NLISWNALIA 399
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-36
Identities = 90/270 (33%), Positives = 130/270 (48%), Gaps = 10/270 (3%)
Query: 232 NTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRV 291
N MLS + G++ +F +MPER++FSWN L+GGYA G F E L + RML G V
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-V 183
Query: 292 FPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVD 351
P+ T VL C + L + VH + G++ +V V NALI MY KCG + +A
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 352 VFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGL 411
VF+ M +D I+WN +ISG +G L LF M+ PD +T ++ AC +G
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG- 302
Query: 412 VEEGLSY-FQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANL 470
+E L + + ++ + G EA RM + DAV W +
Sbjct: 303 -DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAM 360
Query: 471 LGSCRVYKNVELAELALE--RLTELEPKNP 498
+ KN L + ALE L E + +P
Sbjct: 361 ISGYE--KNG-LPDKALETYALMEQDNVSP 387
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-18
Identities = 87/370 (23%), Positives = 147/370 (39%), Gaps = 68/370 (18%)
Query: 11 QLETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNA 70
L+ LH++ GL + +I ++ K + A ++F I +++V+SW +
Sbjct: 404 DLDVGVKLHEL---AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460
Query: 71 MFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNG 130
+ G N ++ F QM L PN T L +C +I AL G+E+H VL+ G
Sbjct: 461 IIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519
Query: 131 FRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFE 190
+ F+ AL++L Y+ CG + A F
Sbjct: 520 IGFDGFLPNALLDL-------------------------------YVRCGRMNYAWNQFN 548
Query: 191 LAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDV----ISWNTMLSGYANNGDVEE 246
E+DV+ WN +++GY+ A +LF++M + V +++ ++L + +G V +
Sbjct: 549 SH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607
Query: 247 CKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRM--LTEGRVF-------PNDAT 297
F M E+ +S + YA V+D R LTE F P+ A
Sbjct: 608 GLEYFHSMEEK--YSITPNLKHYAC------VVDLLGRAGKLTEAYNFINKMPITPDPAV 659
Query: 298 IVTVLSAC-----ARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDV 352
+L+AC LG L + GY +C ++YA G + V
Sbjct: 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC------NLYADAGKWDEVARV 713
Query: 353 FNSMDTKDLI 362
+M L
Sbjct: 714 RKTMRENGLT 723
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 6e-18
Identities = 77/364 (21%), Positives = 155/364 (42%), Gaps = 54/364 (14%)
Query: 20 QIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNE 79
Q+ V+ +G+ +++ +I ++ + AR +FD + ++ V+WN+M GYA +
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHG 304
Query: 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGT 139
+ + L+ +M+ + FTF I+++ ++ L ++ H +++ GF +I T
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 140 ALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVIL 199
AL++LYS +G M++ AR +F+ P +++I
Sbjct: 365 ALVDLYSK----------WGRMED---------------------ARNVFDRMPRKNLIS 393
Query: 200 WNTIVSGYIDVRNMIEARKLFDQMPKKDV----ISWNTMLSGYANNGDVEECKRLFEEMP 255
WN +++GY + +A ++F++M + V +++ +LS +G E+ +F+ M
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
Query: 256 ERN-----VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGA 310
E + + +I GL LD M+ P +L+AC
Sbjct: 454 ENHRIKPRAMHYACMIELLGREGL----LDEAYAMIRRAPFKPTVNMWAALLTACRIHKN 509
Query: 311 LDFSKWV--HVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDL-----IT 363
L+ + +Y N V L+++Y G A V ++ K L T
Sbjct: 510 LELGRLAAEKLYGMGPEKLNNYVV---LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACT 566
Query: 364 WNTI 367
W +
Sbjct: 567 WIEV 570
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-10
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 226 KDVISWNTMLSGYANNGDVEECKRLFEEMPER----NVFSWNGLIGGYAN 271
DV+++NT++ GY G VEE +LF EM +R NV++++ LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 4e-08
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 359 KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITF 399
D++T+NT+I G G+ AL LF+EMK G P+ T+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 7e-08
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 196 DVILWNTIVSGYIDVRNMIEARKLFDQMPKK----DVISWNTMLSGYAN 240
DV+ +NT++ GY + EA KLF++M K+ +V +++ ++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 4e-07
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 64 NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVK 112
+VV++N + +GY + + LF +MKK PN +T+ I++ K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 4e-07
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 13/209 (6%)
Query: 225 KKDVISWNTMLSGYANNGDVEECKRLFEEMP----ERNVFSWNGLIGGYANNGLFFEVLD 280
K D + T++S A +G V+ +F EM E NV ++ LI G A G +
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 281 AFKRMLTEGRVFPNDATIVTVLSACARLGALD--FSKWVHVYAEYNGYQ-GNVCVGNALI 337
A+ M ++ V P+ ++SAC + GA+D F + AE + ++ VG AL+
Sbjct: 529 AYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG-ALM 586
Query: 338 DMYAKCGIIENAVDVFNSMDTKDL----ITWNTIISGLAMHGRGAGALSLFHEMKNAGEM 393
A G ++ A +V+ + ++ + ++ + G ALS++ +MK G
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646
Query: 394 PDGITFIGILCACTHMGLVEEGLSYFQSM 422
PD + F ++ H G +++ Q
Sbjct: 647 PDEVFFSALVDVAGHAGDLDKAFEILQDA 675
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 9e-07
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 229 ISWNTMLSGYANNGDVEECKRLFEEMPERNV 259
+++N+++SGY G +EE LF+EM E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 29/121 (23%), Positives = 54/121 (44%)
Query: 9 SEQLETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSW 68
+L +H Q ++ +G ++ ++ +M AR +FD++ +N++SW
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISW 394
Query: 69 NAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLK 128
NA+ GY + V +F +M PN TF VL +C +G E+ + +
Sbjct: 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
Query: 129 N 129
N
Sbjct: 455 N 455
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 70/373 (18%), Positives = 137/373 (36%), Gaps = 86/373 (23%)
Query: 125 LVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMD----ERNVVVWTSMINGYISCG 180
LV + G +A+ + T LI + ++A ++VF EM E NV + ++I+G G
Sbjct: 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521
Query: 181 DIVSARCLFELAPERDV----ILWNTIVSGYIDVRNMIEARKLFDQMP------KKDVIS 230
+ A + + ++V +++N ++S + A + +M D I+
Sbjct: 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581
Query: 231 WNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGR 290
++ AN G V+ K +++ + E N+ +
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNI------------------------------K 611
Query: 291 VFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAV 350
P TI +++C++ G DF+ ++ + G + + +AL+D+ G ++ A
Sbjct: 612 GTPEVYTIA--VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669
Query: 351 DVFNSMDTKDL---------------------------------------ITWNTIISGL 371
++ + + T N +I+ L
Sbjct: 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 372 AMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ 431
+ AL + EMK G P+ IT+ +L A + GL S A + I P
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL-SQAKEDGIKPN 788
Query: 432 IEHYGCMVDLLAR 444
+ C+ L R
Sbjct: 789 LVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 8e-06
Identities = 61/274 (22%), Positives = 113/274 (41%), Gaps = 32/274 (11%)
Query: 277 EVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNAL 336
E +DA+ R+L +GR+ + +L + G LD K H A++ C
Sbjct: 372 EYIDAYNRLLRDGRI----KDCIDLLEDMEKRGLLDMDKIYH--AKFF----KAC----- 416
Query: 337 IDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG 396
K ++ A + L T+N ++S A GAL + ++ AG D
Sbjct: 417 ----KKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADC 472
Query: 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVK 456
+ ++ C G V+ F M + + + +G ++D ARAG++A+A
Sbjct: 473 KLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 457 RM---PIEADAVIWANLLGSCRVYKNVELAELALERLT-ELEPKNPANFVMLSNIY---- 508
M ++ D V++ L+ +C V+ A L + E P +P + + + +
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 509 -GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN 541
G + R K+V ++ + + K P +I VN
Sbjct: 592 AGQVDRAKEVYQM---IHEYNIKGTPEVYTIAVN 622
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR 307
+V ++N LI GY G E L F M G + PN T ++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 229 ISWNTMLSGYANNGDVEECKRLFEEMPERNV 259
+++NT++ G G VEE LF+EM ER +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 73/356 (20%), Positives = 145/356 (40%), Gaps = 37/356 (10%)
Query: 181 DIVSARCLFELAPER----DVILWNTIVS-----GYIDVRNMIEARKLFDQMP----KKD 227
DI A + L E D L+ T++S G +D M E +F +M + +
Sbjct: 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA--MFE---VFHEMVNAGVEAN 506
Query: 228 VISWNTMLSGYANNGDVEECKRLFEEM------PERNVFSWNGLIGGYANNGLFFEVLDA 281
V ++ ++ G A G V + + M P+R VF N LI +G D
Sbjct: 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF--NALISACGQSGAVDRAFDV 564
Query: 282 FKRMLTEGR-VFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMY 340
M E + P+ T+ ++ ACA G +D +K V+ +G V ++
Sbjct: 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624
Query: 341 AKCGIIENAVDVFNSMDTKDLITWNTIISGL---AMH-GRGAGALSLFHEMKNAGEMPDG 396
++ G + A+ +++ M K + S L A H G A + + + G
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
Query: 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDF-- 454
+++ ++ AC++ ++ L ++ + + P + ++ L +L +A++
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLS 743
Query: 455 -VKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509
+KR+ + + + ++ LL + + ++ L + E + P N VM I G
Sbjct: 744 EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGIKP-NLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 7e-05
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAG 391
+T+N++ISG G+ AL LF EMK G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-05
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD 395
+T+NT+I GL GR AL LF EMK G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 227 DVISWNTMLSGYANNGDVEECKRLFEEMP 255
DV+++NT++ G G V+E L +EM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 334 NALIDMYAKCGIIENAVDVFNSMDTK----DLITWNTIISGLA 372
N LID Y K G +E A+ +FN M + ++ T++ +I GL
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (98), Expect = 3e-04
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 9/192 (4%)
Query: 334 NALIDMYAKCGIIENAVDVF-----NSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMK 388
L K G +E A+++ + + L G+ AL L +
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 389 NAGEMPDGITFIGILCACTHMGLVEEGLSYF-QSMAMDYSIVPQIEHYGCMVDLLARAGR 447
PD + L A +G EE L + +++ +D + E + LL GR
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 448 LAEAVDFVKR---MPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML 504
EA++ +++ + + DA NL E A E+ EL+P N L
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242
Query: 505 SNIYGDLGRWKD 516
+ + +LGR+++
Sbjct: 243 ALLLLELGRYEE 254
|
Length = 291 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 360 DLITWNTIISGLAMHGRGAGALSLFHEMK 388
D++T+NT+I GL GR A+ L EM+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 228 VISWNTMLSGYANNGDVEECKRLFEEMPERNV 259
+ ++N +L A GD + + EEM +
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 260 FSWNGLIGGYANNGLFFEVLDAFKRMLTEG 289
++N LI GY G E L+ FK M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 589 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.72 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.67 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.49 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.49 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.48 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.46 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.42 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.41 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.39 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.32 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.31 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.31 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.3 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.27 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.26 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.26 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.25 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.2 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.18 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.15 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.14 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.13 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.12 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.08 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.07 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.06 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.0 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.96 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.96 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.94 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.94 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.94 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.88 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.87 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.87 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.85 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.81 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.81 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.79 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.77 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.75 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.71 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.69 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.67 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.64 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.64 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.6 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.56 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.51 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.47 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.46 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.44 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.43 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.42 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.39 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.36 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.35 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.27 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.26 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.26 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.26 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.23 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.23 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.21 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.2 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.16 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.13 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.12 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.12 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.1 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.1 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 98.08 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.07 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.05 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.05 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.0 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.98 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.93 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.93 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.93 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.91 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.81 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.81 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.78 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.77 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.75 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.75 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.73 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.71 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.7 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.7 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.66 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.65 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.64 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.64 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.63 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.6 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.57 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.57 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.56 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.56 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.52 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.51 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.47 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.45 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.43 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.42 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.4 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.38 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.37 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.35 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.35 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.31 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.28 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.28 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.27 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.26 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.25 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.21 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.19 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.18 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.11 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.1 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.08 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.08 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.07 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.07 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.98 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.93 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.88 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.88 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.83 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.83 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.8 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.74 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.69 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.68 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.66 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.57 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.52 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.49 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.46 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.44 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.38 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.33 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.32 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.26 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.16 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.06 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.04 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.99 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.97 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.96 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.81 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.81 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.78 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.66 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.64 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.61 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.53 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.49 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.48 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.39 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.37 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.37 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.36 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.32 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.32 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.32 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.26 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.2 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.13 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.06 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.05 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.03 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.0 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.99 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 94.89 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.81 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.8 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.76 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.72 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.68 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.51 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.47 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.45 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.43 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.37 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.34 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.24 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.09 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.98 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.83 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 93.69 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 93.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.65 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.47 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 93.47 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.35 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 93.31 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.23 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.19 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.17 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.13 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.91 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.9 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.87 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.77 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.58 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.51 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.35 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.15 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.12 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.08 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.05 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.01 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.98 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.91 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.85 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.73 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.69 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.66 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 91.6 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.3 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 90.87 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 90.7 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 90.51 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.14 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 90.11 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 90.09 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.03 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.92 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 89.81 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.45 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.45 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.41 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.25 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.19 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 89.14 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.07 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.71 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.41 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 88.29 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.98 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.95 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 87.9 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.88 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.7 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.5 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 87.16 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 86.83 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.61 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.86 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.27 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.9 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.89 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 84.69 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 84.65 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 84.53 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.74 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.7 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.45 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 82.1 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 81.7 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 81.08 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 80.85 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.36 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.21 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.2 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-81 Score=676.07 Aligned_cols=570 Identities=34% Similarity=0.599 Sum_probs=553.0
Q ss_pred ccHHHHHHhccCCchH---HHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCC
Q 007808 3 DTTGAHSEQLETTKHL---HQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNE 79 (589)
Q Consensus 3 ~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 79 (589)
.++.+++++|+..+.+ .++|..+.+.|+.||..+++.++.+|++.|++++|.++|++|++||..+||++|.+|++.|
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g 267 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG 267 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCC
Confidence 3577888999876654 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHc
Q 007808 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFG 159 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 159 (589)
++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+
T Consensus 268 ~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 347 (857)
T PLN03077 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS 347 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCC----CCChhHHHHHHHHHhcCCChHHHHHHhcccCC----CChhhH
Q 007808 160 EMDERNVVVWTSMINGYISCGDIVSARCLFELAP----ERDVILWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISW 231 (589)
Q Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~ 231 (589)
+|.++|..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++++.+.+ ++..+|
T Consensus 348 ~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 348 RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred hCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 9999999999999999999999999999999884 57999999999999999999999999999875 789999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCh
Q 007808 232 NTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGAL 311 (589)
Q Consensus 232 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 311 (589)
+.|+++|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. + +.||..||+.++.+|++.|++
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-LKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-CCCCHhHHHHHHHHHhhhchH
Confidence 99999999999999999999999999999999999999999999999999999986 5 899999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007808 312 DFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAG 391 (589)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 391 (589)
+.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|..+|++||.+|++.|+.++|+++|++|.+.|
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 007808 392 EMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLL 471 (589)
Q Consensus 392 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 471 (589)
+.||..||+.++.+|.+.|++++|.++|+.|.+++++.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl 664 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALL 664 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999998788999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeee--cc
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLG--CL 549 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 549 (589)
.+|...|+.+.++...+++++++|+++..|..|+++|...|+|++|.++.+.|++.|++++||++|++++..++.+ .+
T Consensus 665 ~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d 744 (857)
T PLN03077 665 NACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDD 744 (857)
T ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 77
Q ss_pred ccCCCchHHHHHHHHHHHHcccCCCC
Q 007808 550 SRELDRKSIVRAEANMIKLLPQNNHP 575 (589)
Q Consensus 550 ~~~p~~~~~~~~l~~~~~~~~~~~~~ 575 (589)
..||+...|+..|..+..++.+.+..
T Consensus 745 ~~h~~~~~i~~~l~~l~~~~~~~g~~ 770 (857)
T PLN03077 745 ESHPQIKEINTVLEGFYEKMKASGLA 770 (857)
T ss_pred CCCcchHHHHHHHHHHHHHHHhCCcC
Confidence 88999999999999999999887763
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-75 Score=626.40 Aligned_cols=572 Identities=25% Similarity=0.431 Sum_probs=518.3
Q ss_pred cHHHHHHhccCCch---HHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCC
Q 007808 4 TTGAHSEQLETTKH---LHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEF 80 (589)
Q Consensus 4 ~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 80 (589)
++.++++.|...+. ..++|..+.+.|..++..++|.++..|++.|+++.|.++|++|++||..+||.+|.+|++.|+
T Consensus 88 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~ 167 (857)
T PLN03077 88 AYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGY 167 (857)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCC
Confidence 45677777866554 478999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHcc
Q 007808 81 HRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGE 160 (589)
Q Consensus 81 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 160 (589)
+++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++++|+.+|++.|++++|.++|++
T Consensus 168 ~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCC----CCChhHHHHHHHHHhcCCChHHHHHHhcccCC----CChhhHH
Q 007808 161 MDERNVVVWTSMINGYISCGDIVSARCLFELAP----ERDVILWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISWN 232 (589)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~ 232 (589)
|+++|.++|+++|.+|++.|++++|+++|++|. .||..||+.++.+|.+.|+.+.+.+++..+.+ ||..+|+
T Consensus 248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 248 MPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 999999999999999999999999999999985 57999999999999999999999999999875 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChh
Q 007808 233 TMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312 (589)
Q Consensus 233 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 312 (589)
.++.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN-VSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCCceeHHHHHHHHhccchHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007808 313 FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGE 392 (589)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 392 (589)
.+.+++..+.+.|+.++..+++.|+++|++.|++++|.++|++|.++|..+|++++.+|++.|+.++|+.+|++|.. ++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 58
Q ss_pred CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC------------------------------CCChHHHHHHHHHH
Q 007808 393 MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSI------------------------------VPQIEHYGCMVDLL 442 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~ 442 (589)
.||..||+.++.+|++.|+++.+.+++..+.+. |+ .||..+|+.++.+|
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~ 564 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGY 564 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 999999998888877777777776666665432 43 46777788888888
Q ss_pred HhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc---cCCCCCcchHHHHHHHhhcCChHH
Q 007808 443 ARAGRLAEAVDFVKRM---PIEADAVIWANLLGSCRVYKNVELAELALERLTE---LEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
++.|+.++|+++|++| ++.||..||+.++.+|.+.|++++|.++|+.|.+ +.|+ ..+|.+++++|.+.|++++
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHH
Confidence 8888888888888887 4788888888888888888888888888888874 4565 6788888888888888888
Q ss_pred HHHHHHHhhhCCCccCCcc-----------ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 517 VARIKVAMRDTGFKKLPGC-----------SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
|.+++++|. ++|++.. .+++.++.+.+.+++++|++++.+..|+|+|...|+.+++.+.....
T Consensus 644 A~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 644 AYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 888888883 6676521 12333444444578999999999999999999999998887776554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-73 Score=596.29 Aligned_cols=511 Identities=28% Similarity=0.493 Sum_probs=496.0
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHH
Q 007808 63 QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLD-AMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTAL 141 (589)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 141 (589)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 466799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCC----CCChhHHHHHHHHHhcCCChHHHH
Q 007808 142 IELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAP----ERDVILWNTIVSGYIDVRNMIEAR 217 (589)
Q Consensus 142 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 217 (589)
+.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999985 468899999999999999999999
Q ss_pred HHhcccCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 007808 218 KLFDQMPK----KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFP 293 (589)
Q Consensus 218 ~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 293 (589)
+++..+.+ +|..+|+.++++|++.|++++|.++|+.|.++|+.+||.++.+|++.|++++|+++|++|.+.| +.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~~p 323 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG-VSI 323 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCC
Confidence 99887764 8999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 007808 294 NDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAM 373 (589)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 373 (589)
|..||+.++.+|++.|+++.|.+++..+.+.|++|+..++++|+++|++.|++++|.++|++|.++|..+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 007808 374 HGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVD 453 (589)
Q Consensus 374 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 453 (589)
.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+++++.|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 454 FVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 454 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
++++|+..|+..+|++++.+|...|+++.|..++++++++.|++...|..|+++|.+.|+|++|.+++++|.+.|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeCCeeeee--ccccCCCchHHHHHHHHHHHHcccCCC
Q 007808 534 GCSSIEVNEVVMLG--CLSRELDRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 534 ~~~~~~~~~~~~~~--~~~~~p~~~~~~~~l~~~~~~~~~~~~ 574 (589)
|++|++.+...+.+ ....||....++..|..+..++.+.+.
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy 606 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGY 606 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999998 778899999999999999998887665
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=525.50 Aligned_cols=500 Identities=17% Similarity=0.251 Sum_probs=454.5
Q ss_pred HhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCcc-----cHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcc
Q 007808 27 TSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVV-----SWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCF 101 (589)
Q Consensus 27 ~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 101 (589)
.....++...|..++..+.+.|++++|+++|++|++++.. .++.++..|.+.|.+++|.++|+.|.. ||..
T Consensus 363 ~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 363 GVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred ccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 3445677888999999999999999999999999875544 556677789999999999999999974 8999
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCC----CCCeehHHHHHHHHH
Q 007808 102 TFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMD----ERNVVVWTSMINGYI 177 (589)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~ 177 (589)
+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|+.+|.+|+
T Consensus 439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 479999999999999
Q ss_pred hCCCHHHHHHHHHhCC----CCChhHHHHHHHHHhcCCChHHHHHHhcccC------CCChhhHHHHHHHHHhcCCHHHH
Q 007808 178 SCGDIVSARCLFELAP----ERDVILWNTIVSGYIDVRNMIEARKLFDQMP------KKDVISWNTMLSGYANNGDVEEC 247 (589)
Q Consensus 178 ~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A 247 (589)
+.|++++|.++|+.|. .||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999885 4799999999999999999999999999994 38999999999999999999999
Q ss_pred HHHHhhCCC----CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 248 KRLFEEMPE----RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 248 ~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
.++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|++.|++++|.+++..|.+
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999986 677999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHH
Q 007808 324 NGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD----TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITF 399 (589)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 399 (589)
.|++|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|+++|++|...|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999995 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----c-------------------CCHHHHHHHHh
Q 007808 400 IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----A-------------------GRLAEAVDFVK 456 (589)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~ 456 (589)
+.++.+|++.|++++|.+++++|.+ .|+.||..+|+.++..+.+ + +..++|..+|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 9999999999999999999999965 4999999999999876432 2 22467999999
Q ss_pred hC---CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccC
Q 007808 457 RM---PIEADAVIWANLLGSCRVYKNVELAELALERLTE-LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 457 ~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 532 (589)
+| ++.||..+|+.++.++...+....+..+++.+.. -.+.+..+|..|++.+.+. .++|..++++|.+.|+.|+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 99 6899999999999888889999999888887653 3344578999999987432 3689999999999999998
Q ss_pred Cc
Q 007808 533 PG 534 (589)
Q Consensus 533 ~~ 534 (589)
..
T Consensus 915 ~~ 916 (1060)
T PLN03218 915 VS 916 (1060)
T ss_pred cc
Confidence 75
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-59 Score=490.03 Aligned_cols=478 Identities=14% Similarity=0.206 Sum_probs=436.5
Q ss_pred ChhHHHHHhhcCCC--CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCC-CCCcccHHHHHHHHhccCChHHHHHHHHH
Q 007808 49 QMTYARKMFDKITD--QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDA-MPNCFTFPIVLKSCVKINALREGEELHCL 125 (589)
Q Consensus 49 ~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 125 (589)
+...+....+.... ++...|..++..+++.|++++|+++|++|.+.|+ .|+..+++.++..|.+.|..++|..+++.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~ 431 (1060)
T PLN03218 352 EEENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKL 431 (1060)
T ss_pred hhhhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444445555443 6788899999999999999999999999999985 56777888999999999999999999998
Q ss_pred HHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC----CCeehHHHHHHHHHhCCCHHHHHHHHHhCC----CCCh
Q 007808 126 VLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE----RNVVVWTSMINGYISCGDIVSARCLFELAP----ERDV 197 (589)
Q Consensus 126 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~ 197 (589)
|. .||..+|+.++.+|++.|+++.|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||.
T Consensus 432 M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 432 IR----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred cC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH
Confidence 85 39999999999999999999999999999975 789999999999999999999999999997 5799
Q ss_pred hHHHHHHHHHhcCCChHHHHHHhcccCC----CChhhHHHHHHHHHhcCCHHHHHHHHhhCC------CCCchhHHHHHH
Q 007808 198 ILWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISWNTMLSGYANNGDVEECKRLFEEMP------ERNVFSWNGLIG 267 (589)
Q Consensus 198 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~ 267 (589)
.+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ 587 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 9999999999999999999999999964 999999999999999999999999999995 389999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 007808 268 GYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIE 347 (589)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (589)
+|++.|++++|.++|++|.+.| +.|+..+|+.++.+|++.|++++|..+|++|.+.|+.|+..+|+.++.+|++.|+++
T Consensus 588 ay~k~G~ldeA~elf~~M~e~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCC----CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007808 348 NAVDVFNSMD----TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 348 ~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 423 (589)
+|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999997 478899999999999999999999999999999999999999999999999999999999999995
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHhc-----------------------C
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM---PIEADAVIWANLLGSCRV-----------------------Y 477 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~-----------------------~ 477 (589)
. .|+.||..+|+.++.+|++.|++++|.+++++| ++.||..+|++++..|.+ .
T Consensus 747 ~-~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n 825 (1060)
T PLN03218 747 R-LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIEN 825 (1060)
T ss_pred H-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Confidence 4 499999999999999999999999999999998 589999999999866432 1
Q ss_pred CCHHHHHHHHHHHHc--cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 478 KNVELAELALERLTE--LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 478 g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
+..+.|..+|++|++ +.|+ ..+|..++.++++.+..+.+..+++.|...+..++.
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~ 882 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQ 882 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcch
Confidence 234678889999988 4465 778888888888889999999998888766655543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-59 Score=488.24 Aligned_cols=423 Identities=24% Similarity=0.418 Sum_probs=404.1
Q ss_pred cHHHHHHhccCCchH---HHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCC
Q 007808 4 TTGAHSEQLETTKHL---HQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEF 80 (589)
Q Consensus 4 ~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 80 (589)
++.+++.+|+..+.+ .++|..|.+.|+.||..+|+.++.+|++.|+++.|.++|++|++||..+||.++.+|++.|+
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~ 204 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcC
Confidence 577888888776654 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHcc
Q 007808 81 HRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGE 160 (589)
Q Consensus 81 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 160 (589)
+++|+++|++|.+.|+.|+..||+.++.+|+..|..+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++
T Consensus 205 ~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 284 (697)
T PLN03081 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284 (697)
T ss_pred HHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCC----CCChhHHHHHHHHHhcCCChHHHHHHhcccCC----CChhhHH
Q 007808 161 MDERNVVVWTSMINGYISCGDIVSARCLFELAP----ERDVILWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISWN 232 (589)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~ 232 (589)
|.++|.++|+.++.+|++.|++++|.++|++|. .||..||+.++.+|++.|++++|.+++..|.+ +|..+|+
T Consensus 285 m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~ 364 (697)
T PLN03081 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364 (697)
T ss_pred CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehH
Confidence 999999999999999999999999999999984 67999999999999999999999999999874 8999999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChh
Q 007808 233 TMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312 (589)
Q Consensus 233 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 312 (589)
+++++|++.|++++|.++|++|.++|+.+||.||.+|++.|+.++|+++|++|.+.| +.||..||+.++.+|++.|+.+
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007808 313 FSKWVHVYAEY-NGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD-TKDLITWNTIISGLAMHGRGAGALSLFHEMKNA 390 (589)
Q Consensus 313 ~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 390 (589)
+|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. .|+..+|++|+.+|...|+.+.|..+++++.+
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~- 522 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG- 522 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC-
Confidence 99999999986 6999999999999999999999999999999997 68999999999999999999999999999975
Q ss_pred CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007808 391 GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP 430 (589)
Q Consensus 391 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 430 (589)
+.| +..+|..++..|++.|++++|.++++.|.+. |+..
T Consensus 523 -~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 523 -MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred -CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 556 4679999999999999999999999999654 6643
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=330.52 Aligned_cols=536 Identities=13% Similarity=0.060 Sum_probs=272.4
Q ss_pred ccCCchHHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHH
Q 007808 12 LETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLF 88 (589)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (589)
.+........+..+.+.. +.+...+..+...+.+.|++++|...++.+.. .+...+..+...+.+.|++++|.+.|
T Consensus 308 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 386 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYL 386 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344444445555544432 23334445555555556666666665555443 23334555555555556666666666
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CC
Q 007808 89 TQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RN 165 (589)
Q Consensus 89 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~ 165 (589)
+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+.. .......++..+.+.|++++|..+++.+.. .+
T Consensus 387 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 464 (899)
T TIGR02917 387 AKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDN 464 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Confidence 5555432 223334444444555555555555555555544321 122333344444455555555555544432 23
Q ss_pred eehHHHHHHHHHhCCCHHHHHHHHHhCCC---CChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHH------
Q 007808 166 VVVWTSMINGYISCGDIVSARCLFELAPE---RDVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNT------ 233 (589)
Q Consensus 166 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~------ 233 (589)
..+|..+...+...|++++|...|+++.+ .+...+..++..+...|++++|.+.++++.+ .+..++..
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33444445555555555555555544322 1233344444444444444444444444432 22334444
Q ss_pred ----------------------------HHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHH
Q 007808 234 ----------------------------MLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAF 282 (589)
Q Consensus 234 ----------------------------l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~ 282 (589)
++..+.+.|++++|..+++.+.+ .+...|..+..++...|++++|+..|
T Consensus 545 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444455555555555544432 23344444555555555555555555
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---C
Q 007808 283 KRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---K 359 (589)
Q Consensus 283 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 359 (589)
+++.+.. +.+...+..+..++.+.|++++|..++..+.+.. +.+...+..++..+...|++++|.++++.+.+ .
T Consensus 625 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 701 (899)
T TIGR02917 625 KKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK 701 (899)
T ss_pred HHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 5554432 2233344444444555555555555555544432 33344444555555555555555555554432 1
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
+...+..+...+...|++++|+..|+++... .|+..++..++.++.+.|++++|.+.++++.. ..+.+...+..++
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la 777 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALA 777 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 3334444555555555555555555555543 23334444455555555555555555555543 2223344555555
Q ss_pred HHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 517 (589)
..|...|++++|.+.|+++ . .+++...++.+...+...|+ .+|+..+++++++.|+++..+..++.++...|++++|
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555554 1 22234445555555555555 4455555555555555555555555555555555555
Q ss_pred HHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 518 ARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
.++++++ ++.+|+++.++..+++++.+.|+..+|+..+..+
T Consensus 857 ~~~~~~a------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 857 LPLLRKA------------------------VNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHH------------------------HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555 4888999999999999999999999998877644
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=320.94 Aligned_cols=563 Identities=11% Similarity=0.028 Sum_probs=471.4
Q ss_pred ccCCchHHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHH
Q 007808 12 LETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLF 88 (589)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~ 88 (589)
.+........+....+.+ +.+...+..+...+.+.|++++|...|+...+ .+...+..+...+.+.|++++|...+
T Consensus 274 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 352 (899)
T TIGR02917 274 KKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352 (899)
T ss_pred hcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455566677777777655 22234455667788899999999999998764 34456778888999999999999999
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCC---C
Q 007808 89 TQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDER---N 165 (589)
Q Consensus 89 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 165 (589)
+.+.+.. +.+...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+. .
T Consensus 353 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 430 (899)
T TIGR02917 353 SPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430 (899)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc
Confidence 9998764 4567788889999999999999999999998865 346677888899999999999999999988652 3
Q ss_pred eehHHHHHHHHHhCCCHHHHHHHHHhCCC---CChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHH
Q 007808 166 VVVWTSMINGYISCGDIVSARCLFELAPE---RDVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYA 239 (589)
Q Consensus 166 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 239 (589)
...+..++..+.+.|++++|..+++.+.. .+..++..+...+...|++++|.+.|+++.+ .+...+..+...+.
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 510 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI 510 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 45677788999999999999999988764 3677899999999999999999999998865 45567788889999
Q ss_pred hcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 007808 240 NNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKW 316 (589)
Q Consensus 240 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 316 (589)
..|++++|.+.|+.+.+ .+..++..+...+...|+.++|...++++...+ +.+...+..+...+...|++++|..
T Consensus 511 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999875 356788889999999999999999999998875 4566778889999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 007808 317 VHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEM 393 (589)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 393 (589)
+++.+.+.. +.+...+..++.++...|++++|...|+.+.+ .++..+..+..++...|++++|..+++++.+.. +
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 666 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-P 666 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 999998764 66788999999999999999999999998763 366788899999999999999999999999852 3
Q ss_pred CCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHH
Q 007808 394 PDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLG 472 (589)
Q Consensus 394 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 472 (589)
.+..++..++..+...|++++|.++++.+... .+++...+..++..+.+.|++++|++.++++ ...|+..++..+..
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 744 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHR 744 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHH
Confidence 45778899999999999999999999999753 3456778888999999999999999999988 45677778888889
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC------ccceeeeCCe---
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP------GCSSIEVNEV--- 543 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~--- 543 (589)
++.+.|++++|.+.++++++..|+++..+..++.+|...|++++|++.++++.+.... ++ +......+..
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~A~ 823 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKDPRAL 823 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCcHHHH
Confidence 9999999999999999999999999999999999999999999999999999755422 21 1111222221
Q ss_pred -eeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhh
Q 007808 544 -VMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFS 584 (589)
Q Consensus 544 -~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 584 (589)
....++++.|+++.++..++.+|...|+.++|+.++.....
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 824 EYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11117788999999999999999999999999888765543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-27 Score=259.85 Aligned_cols=485 Identities=11% Similarity=0.042 Sum_probs=272.8
Q ss_pred CCCccchHHHHHHHHccCChhHHHHHhhcCCC--CCcccH-----------------HHHHHHHHcCCChhHHHHHHHHh
Q 007808 31 EKSDYITPRIITACAQLKQMTYARKMFDKITD--QNVVSW-----------------NAMFNGYAQNEFHRTVVVLFTQM 91 (589)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~m 91 (589)
+.++.++..++..+.+.|+.++|.+.+++..+ |+...+ ......+...|++++|++.|+.+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44667778888888899999999999988865 433222 22334677889999999999998
Q ss_pred hhCCCCCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCee---
Q 007808 92 KKLDAMPNCFT-FPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVV--- 167 (589)
Q Consensus 92 ~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--- 167 (589)
.+.+ +|+... ...........|+.++|.+.++++.+.. +.+...+..+...+...|+.++|++.++++.+....
T Consensus 139 l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 139 FNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred ccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 7653 333221 1111122234588899999999998875 446677788888888899999999988876431100
Q ss_pred ---hH-----------------H----------------------------------HHHHHHHhCCCHHHHHHHHHhCC
Q 007808 168 ---VW-----------------T----------------------------------SMINGYISCGDIVSARCLFELAP 193 (589)
Q Consensus 168 ---~~-----------------~----------------------------------~l~~~~~~~g~~~~a~~~~~~~~ 193 (589)
.| . .....+...|++++|...|++..
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 00 0 01122333444444444444433
Q ss_pred C--C-ChhHHHHHHHHHhcCCChHHHHHHhcccCC--CChh---hH------------HHHHHHHHhcCCHHHHHHHHhh
Q 007808 194 E--R-DVILWNTIVSGYIDVRNMIEARKLFDQMPK--KDVI---SW------------NTMLSGYANNGDVEECKRLFEE 253 (589)
Q Consensus 194 ~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~---~~------------~~l~~~~~~~~~~~~A~~~~~~ 253 (589)
+ | +...+..+..++.+.|++++|+..|++..+ |+.. .+ ......+.+.|++++|...|++
T Consensus 297 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 297 RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 1 334444444444444444444444444432 1110 01 0112233344444444444444
Q ss_pred CCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---
Q 007808 254 MPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ--- 327 (589)
Q Consensus 254 ~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 327 (589)
+.+ .+...+..+...+...|++++|++.|+++++.. +.+...+..+...+. .++.++|..+++.+......
T Consensus 377 Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~ 453 (1157)
T PRK11447 377 ARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSID 453 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHH
Confidence 443 122333344444444444444444444444432 112222333333332 23344444444332111000
Q ss_pred -----CChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhH
Q 007808 328 -----GNVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGIT 398 (589)
Q Consensus 328 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~ 398 (589)
.....+..+...+...|++++|++.|++..+ | ++..+..+...|.+.|++++|...++++.+. .| +...
T Consensus 454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~ 531 (1157)
T PRK11447 454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQ 531 (1157)
T ss_pred HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHH
Confidence 0011222334445555666666666665542 2 3344555556666666666666666665552 23 2333
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh---------HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI---------EHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWAN 469 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 469 (589)
+..+...+...+++++|...++.+... ...++. ..+..+...+...|+.++|+++++.-+ ++...+..
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~ 608 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRIDLT 608 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchHHHH
Confidence 333333445556666666666554321 111111 112234556777888888888877433 34455666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+...+.+.|++++|+..|+++++.+|+++.++..++.+|...|++++|++.++++.
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77888999999999999999999999999999999999999999999999999875
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-25 Score=248.69 Aligned_cols=515 Identities=13% Similarity=0.036 Sum_probs=383.7
Q ss_pred HHHHHHHHccCChhHHHHHhhcCCCCCcccHH---HHHH-HHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 007808 38 PRIITACAQLKQMTYARKMFDKITDQNVVSWN---AMFN-GYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKI 113 (589)
Q Consensus 38 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~ll~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 113 (589)
..+...+.+.|++++|...|+...+.+..... .... .....|++++|++.|+++.+.. +.+...+..+...+...
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc
Confidence 34455678889999999999887652221111 1111 1224588899999999988764 33555677777888888
Q ss_pred CChHHHHHHHHHHHHhCC------------------C--------------CchH---------------------HHhH
Q 007808 114 NALREGEELHCLVLKNGF------------------R--------------ANIF---------------------VGTA 140 (589)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~------------------~--------------~~~~---------------------~~~~ 140 (589)
|+.++|.+.++++.+... . |+.. ....
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 898888888888754321 0 0000 0011
Q ss_pred HHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCCh-----hHH------------
Q 007808 141 LIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPERDV-----ILW------------ 200 (589)
Q Consensus 141 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~------------ 200 (589)
....+...|++++|+..|++..+ .+..++..+...+.+.|++++|...|++..+.++ ..|
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 23456678999999999998865 3667899999999999999999999988764321 112
Q ss_pred HHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhCCC
Q 007808 201 NTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYANNGL 274 (589)
Q Consensus 201 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~ 274 (589)
......+.+.|++++|+..|+++.+ .+...+..+...+...|++++|++.|+++.+ | +...+..+...|. .++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 1234567789999999999999876 3556777889999999999999999999886 3 4456666777764 467
Q ss_pred hHHHHHHHHHHHHcCCCC--------CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007808 275 FFEVLDAFKRMLTEGRVF--------PNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGII 346 (589)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (589)
.++|+.+++.+.... .. .....+......+...|++++|...++++.+.. |.+...+..+...|.+.|++
T Consensus 434 ~~~A~~~l~~l~~~~-~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQ-RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHH-HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 899999887654322 00 011234556677888999999999999999875 45677888899999999999
Q ss_pred HHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh---------HHHHHHHHHhccCcHHH
Q 007808 347 ENAVDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI---------TFIGILCACTHMGLVEE 414 (589)
Q Consensus 347 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~g~~~~ 414 (589)
++|...++++.+ | +...+..+...+...+++++|+..++.+......++.. .+..+...+...|+.++
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 999999998753 3 45556666666778999999999998865432222221 23345677889999999
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 415 GLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
|.++++. .+++...+..+...|.+.|++++|++.|+++ ...| +...+..+...+...|++++|++.++++.+
T Consensus 592 A~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9999872 2355667788999999999999999999998 4455 577888889999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 493 LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 493 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
..|+++..+..++.++...|++++|.++++++....-+. + -.++++.++..++.++...|+.
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~-~-----------------~~~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQ-P-----------------PSMESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccC-C-----------------cchhhHHHHHHHHHHHHHcCCH
Confidence 999999999999999999999999999999986222100 0 0012445777789999999999
Q ss_pred CCCcchHh
Q 007808 573 NHPLTFIV 580 (589)
Q Consensus 573 ~~~~~~~~ 580 (589)
++|++...
T Consensus 728 ~~A~~~y~ 735 (1157)
T PRK11447 728 QQALETYK 735 (1157)
T ss_pred HHHHHHHH
Confidence 88887744
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-25 Score=230.34 Aligned_cols=528 Identities=12% Similarity=0.019 Sum_probs=352.1
Q ss_pred HHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCC--CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCC
Q 007808 19 HQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITD--QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDA 96 (589)
Q Consensus 19 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 96 (589)
...+....+.. |-+..++..+...|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+++++.+..
T Consensus 64 ~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~- 138 (987)
T PRK09782 64 IREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ- 138 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-
Confidence 44444444433 33457777888888888888888888888765 3323333333333 77788888888887764
Q ss_pred CCCcccHHHHHHHH-----hccCChHHHHHHHHHHHHhCCCCchHHHhHH-HHHHHcCCChHHHHHHHccCCCC---Cee
Q 007808 97 MPNCFTFPIVLKSC-----VKINALREGEELHCLVLKNGFRANIFVGTAL-IELYSTGKAIEAAYKVFGEMDER---NVV 167 (589)
Q Consensus 97 ~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~---~~~ 167 (589)
+-+...+..+.... .+..+.++|.+.++ .....+.|+..+.... .+.|.+.|++++|++.+.++.+. +..
T Consensus 139 P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~ 217 (987)
T PRK09782 139 KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAA 217 (987)
T ss_pred CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHH
Confidence 22344444444440 11233455555555 3333334445544444 78888888888888888888763 233
Q ss_pred hHHHHHHHHHh-CCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCC-----CChhh-----------
Q 007808 168 VWTSMINGYIS-CGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPK-----KDVIS----------- 230 (589)
Q Consensus 168 ~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~----------- 230 (589)
....+...|.. .++ +++..+++...+.|+..+..++..+.+.|+.++|.++++++.. |+..+
T Consensus 218 ~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~ 296 (987)
T PRK09782 218 ERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSAN 296 (987)
T ss_pred HHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCc
Confidence 35566667777 366 7777777655556788888888888999999999888887753 11111
Q ss_pred -------------------HHHHHHHHHhcCCHHHHHHHHhhCCCC--------------------------------Cc
Q 007808 231 -------------------WNTMLSGYANNGDVEECKRLFEEMPER--------------------------------NV 259 (589)
Q Consensus 231 -------------------~~~l~~~~~~~~~~~~A~~~~~~~~~~--------------------------------~~ 259 (589)
...++..+.+.++++.++++...-... +.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 376 (987)
T PRK09782 297 PVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANL 376 (987)
T ss_pred hhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCH
Confidence 122356667777777777664322110 11
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHhcCChh---HHHHH------------------
Q 007808 260 FSWNGLIGGYANNGLFFEVLDAFKRMLT-EGRVFPNDATIVTVLSACARLGALD---FSKWV------------------ 317 (589)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~~~---~a~~~------------------ 317 (589)
.....+.....+.|+.++|.++|+.... .+...++......++..+.+.+... .+..+
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 1111222334567888888888888766 2212333444446666666665422 22111
Q ss_pred ----HHHHHHc-C-CCC--ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHH--HHHHHhCCChHHHHHHHHHH
Q 007808 318 ----HVYAEYN-G-YQG--NVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTI--ISGLAMHGRGAGALSLFHEM 387 (589)
Q Consensus 318 ----~~~~~~~-~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~m 387 (589)
....... + .++ +...+..+..++.. ++.++|...+.+.....+..+..+ ...+...|++++|...|+++
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka 535 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKI 535 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1111111 1 133 56677777777776 788888887776653222233343 44456889999999999987
Q ss_pred HHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH
Q 007808 388 KNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAV 465 (589)
Q Consensus 388 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 465 (589)
... +|+...+..+..++.+.|++++|..++++.... .|+ ...+..+...+.+.|++++|+..+++. ...|+..
T Consensus 536 ~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~ 610 (987)
T PRK09782 536 SLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSAN 610 (987)
T ss_pred hcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 653 455555667777888899999999999888653 243 333334444455669999999999887 5678888
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeee
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM 545 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (589)
.+..+..++.+.|++++|+..++++++++|+++..+..++.++...|++++|++.+++..
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL-------------------- 670 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH-------------------- 670 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------------------
Confidence 888888889999999999999999999999999999999999999999999999998885
Q ss_pred eeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 546 LGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 546 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
+++|+++.++.++|+++..+|+.++|++.+....
T Consensus 671 ----~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 671 ----KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred ----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7899999999999999999999998888766543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-22 Score=213.72 Aligned_cols=526 Identities=10% Similarity=0.024 Sum_probs=366.9
Q ss_pred HHHHhccCCchHHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCC--C-CcccHHHHHHH--------H
Q 007808 7 AHSEQLETTKHLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITD--Q-NVVSWNAMFNG--------Y 75 (589)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~--------~ 75 (589)
..+...+..+......+...+. .|+...|..++..+ ++.++|..+++++.. | +..++..+... |
T Consensus 86 ~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y 160 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRL 160 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhh
Confidence 3344444455555555555543 35545555444333 889999999999875 3 34445444444 5
Q ss_pred HcCCChhHHHHHHHHhhhCCCCCCcccHHHH-HHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHc-CCChHH
Q 007808 76 AQNEFHRTVVVLFTQMKKLDAMPNCFTFPIV-LKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYST-GKAIEA 153 (589)
Q Consensus 76 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 153 (589)
.+. ++|.+.++ .......|+..+.... .+.+...+++++|.+++.++.+.++ .+......|..+|.. .++ ++
T Consensus 161 ~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 161 AQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HH
Confidence 555 55555555 3333334445545555 8888899999999999999999873 345556677778887 466 88
Q ss_pred HHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCC-----CChh------------------------------
Q 007808 154 AYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPE-----RDVI------------------------------ 198 (589)
Q Consensus 154 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~------------------------------ 198 (589)
+..+++...+.+...+..++..|.+.|+.++|.+.++++.. ++..
T Consensus 235 a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~ 314 (987)
T PRK09782 235 LLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQY 314 (987)
T ss_pred HHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHH
Confidence 88887765556788899999999999999999999988752 1111
Q ss_pred HHHHHHHHHhcCCChHHHHHHhcccCC-------------------------------C-ChhhHHHHHHHHHhcCCHHH
Q 007808 199 LWNTIVSGYIDVRNMIEARKLFDQMPK-------------------------------K-DVISWNTMLSGYANNGDVEE 246 (589)
Q Consensus 199 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------------~-~~~~~~~l~~~~~~~~~~~~ 246 (589)
..-.++..+.+.++++-++++...-.. | +......+.-...+.|+.++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~ 394 (987)
T PRK09782 315 VVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSRE 394 (987)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHH
Confidence 111235666777777776666432211 0 11122222234456899999
Q ss_pred HHHHHhhCCC-C-Cc----hhHHHHHHHHHhCCC---hHHHHHH----------------------HHHHHHcCCC-CC-
Q 007808 247 CKRLFEEMPE-R-NV----FSWNGLIGGYANNGL---FFEVLDA----------------------FKRMLTEGRV-FP- 293 (589)
Q Consensus 247 A~~~~~~~~~-~-~~----~~~~~l~~~~~~~g~---~~~A~~~----------------------~~~~~~~~~~-~p- 293 (589)
|.++|+.... + +. ....-++..|.+.+. ..++..+ +......-+. ++
T Consensus 395 a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~ 474 (987)
T PRK09782 395 AADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPS 474 (987)
T ss_pred HHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCC
Confidence 9999998876 2 22 233456667766655 3333222 2222221111 33
Q ss_pred -cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHH
Q 007808 294 -NDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--KDLITWNTIISG 370 (589)
Q Consensus 294 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~ 370 (589)
+...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. ++...+..+..+
T Consensus 475 ~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~a 551 (987)
T PRK09782 475 YDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANT 551 (987)
T ss_pred CCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 56667777766665 88889999888877664 4444444455566789999999999997763 444567777888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
+.+.|++++|...+++..+.+ +++...+..+.......|++++|...+++.++ ..|+...+..+..++.+.|++++
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999853 22333343444455567999999999999974 45788899999999999999999
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 451 AVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 451 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
|+..+++. ...| +...+..+..++...|++++|+..++++++++|+++.++..++.++...|++++|+..+++..
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al--- 704 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI--- 704 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---
Confidence 99999998 4566 456677777899999999999999999999999999999999999999999999999999986
Q ss_pred CccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCC
Q 007808 529 FKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 574 (589)
+++|+++.+.+..+++...-....+
T Consensus 705 ---------------------~l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 705 ---------------------DDIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred ---------------------hcCCCCchhhhhhhHHHHHHHHHHH
Confidence 6677777777777777665554433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=204.10 Aligned_cols=442 Identities=14% Similarity=0.143 Sum_probs=362.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHc
Q 007808 68 WNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYST 147 (589)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 147 (589)
-..+..-..+.|++.+|.+.-...-+.+ +.+......+-..+....+.+....--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3455666778999999998876665443 2333344444455556666666555544444443 4456789999999999
Q ss_pred CCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhH---HHHHHHHHhcCCChHHHHHHhc
Q 007808 148 GKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPERDVIL---WNTIVSGYIDVRNMIEARKLFD 221 (589)
Q Consensus 148 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~ 221 (589)
.|++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|....+-++.. .+.+.......|+..+|...+.
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999998876 356789999999999999999999998887665533 3345555667899999999998
Q ss_pred ccCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-
Q 007808 222 QMPK--KD-VISWNTMLSGYANNGDVEECKRLFEEMPE--RN-VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPN- 294 (589)
Q Consensus 222 ~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~- 294 (589)
+..+ |. ...|..|...+-..|+...|+..|++..+ |+ ...|-.|...|...+.+++|+..|.+..... |+
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr---pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR---PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC---Ccc
Confidence 8775 33 46789999999999999999999999886 43 4678889999999999999999999998854 55
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHH
Q 007808 295 DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGL 371 (589)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 371 (589)
...+..+...|...|.++.|...|++.++.. |.-...|+.|..++-..|++.+|.+.|++... ....+.+.|...|
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 5577788888999999999999999999875 44577899999999999999999999998773 2456788899999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 007808 372 AMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLA 449 (589)
Q Consensus 372 ~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 449 (589)
...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..|++.+ .+.|+ ...|+.+...|-..|+.+
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHH
Confidence 999999999999999988 5665 4578899999999999999999999987 67787 678999999999999999
Q ss_pred HHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHH
Q 007808 450 EAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 450 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
.|++.+.++ .+.|. ...++.|...|...|+..+|++.|+.+++++|+.|.+|.+++.++.--.+|.+--+-
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~ 512 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKR 512 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHH
Confidence 999999988 57775 467888999999999999999999999999999999999999998777777664333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=208.31 Aligned_cols=432 Identities=13% Similarity=0.145 Sum_probs=354.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhC
Q 007808 103 FPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISC 179 (589)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 179 (589)
...|..-..+.|++.+|++.-...-..+ +.+....-.+-..+....+.++....-....+ ....+|+.+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 4445556668899999988766554433 22333333344556666666665544333333 3456899999999999
Q ss_pred CCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccCC--CChhh-HHHHHHHHHhcCCHHHHHHHHhh
Q 007808 180 GDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMPK--KDVIS-WNTMLSGYANNGDVEECKRLFEE 253 (589)
Q Consensus 180 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~A~~~~~~ 253 (589)
|++++|+.+++.+.+. ....|..+..++...|+.+.|.+.|.+..+ |+... ...+...+...|++++|...|.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 9999999999988754 557899999999999999999999999887 43332 23455666678999999999988
Q ss_pred CCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 007808 254 MPE--RN-VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPN-DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN 329 (589)
Q Consensus 254 ~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 329 (589)
..+ |. ...|+.|...+..+|+...|+..|++.++.+ |+ ...|..+...|...+.++.|...|.++.... +..
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld---P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD---PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC---CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 775 43 4679999999999999999999999999854 55 4578889999999999999999999888764 446
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMDTKD---LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCA 405 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 405 (589)
..++..+...|..+|.++.|++.|++..+.+ +..|+.|..++-..|+..+|...+.+.... .| ...+.+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 7778888889999999999999999987433 468999999999999999999999999984 55 45678899999
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVEL 482 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 482 (589)
+...|.+++|..+|.... .+.|. ....+.|...|.++|++++|+..++++ .++|+ ...++.+...|...|+...
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999887 44566 567889999999999999999999998 68886 4678999999999999999
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHH
Q 007808 483 AELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAE 562 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 562 (589)
|.+.|.+++.++|.-.+++.+|+.+|..+|+..+|+.-|+... +++||.|+++-+|
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL------------------------klkPDfpdA~cNl 496 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL------------------------KLKPDFPDAYCNL 496 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH------------------------ccCCCCchhhhHH
Confidence 9999999999999999999999999999999999999999885 7888888888777
Q ss_pred HHHHHH
Q 007808 563 ANMIKL 568 (589)
Q Consensus 563 ~~~~~~ 568 (589)
.....-
T Consensus 497 lh~lq~ 502 (966)
T KOG4626|consen 497 LHCLQI 502 (966)
T ss_pred HHHHHH
Confidence 665443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-20 Score=196.42 Aligned_cols=414 Identities=11% Similarity=-0.004 Sum_probs=282.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCC---CeehHHHHHHHHHhC
Q 007808 103 FPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDER---NVVVWTSMINGYISC 179 (589)
Q Consensus 103 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 179 (589)
+......+...|++++|...|++.++. .|+...|..+..+|.+.|++++|++.++...+. +..+|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 334455666777777787777777664 355666777777777777777777777776642 334677777777777
Q ss_pred CCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007808 180 GDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE 256 (589)
Q Consensus 180 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 256 (589)
|++++|+..|...... +......++..+........+...++.-. ++...+..+.. |......+....-+....+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 7777777666543221 11111111111111111223333333211 22222222222 2221122222222222111
Q ss_pred CC---chhHHHHHHH---HHhCCChHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 007808 257 RN---VFSWNGLIGG---YANNGLFFEVLDAFKRMLTEGRVFPN-DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN 329 (589)
Q Consensus 257 ~~---~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 329 (589)
-+ ...+..+... ....+++++|++.|+..++.+...|+ ...+..+...+...|++++|...++...+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 11 1111111111 12347899999999999886523444 4467777778889999999999999998864 445
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCA 405 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 405 (589)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+. .| +...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHH
Confidence 66788889999999999999999997753 35678999999999999999999999999985 45 56677788889
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-H-------HHHHHHHHHhc
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-V-------IWANLLGSCRV 476 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~ 476 (589)
+.+.|++++|+..+++..+. .+.+...++.+..++...|++++|++.|++. .+.|+. . .++.....+..
T Consensus 443 ~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 99999999999999998753 3345778899999999999999999999986 444431 1 11222223445
Q ss_pred CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 477 YKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.|++++|.+.++++++++|++..++..++.++.+.|++++|++.+++..
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7999999999999999999998899999999999999999999999985
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-20 Score=194.00 Aligned_cols=384 Identities=10% Similarity=-0.072 Sum_probs=239.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhCCC--CChhHHHHHHHHHhcCCChHHHHHHhcccCC--C-ChhhHHHHHHHHHhcC
Q 007808 168 VWTSMINGYISCGDIVSARCLFELAPE--RDVILWNTIVSGYIDVRNMIEARKLFDQMPK--K-DVISWNTMLSGYANNG 242 (589)
Q Consensus 168 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 242 (589)
.+......+.+.|++++|+..|+.... |+...|..+..+|.+.|++++|+..++...+ | +...+..+..+|...|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 455677888888999999999887653 4667788888888888999999888888775 3 4567777888888889
Q ss_pred CHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCcHHHHHHHHH---------------
Q 007808 243 DVEECKRLFEEMPERN---VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGR-VFPNDATIVTVLS--------------- 303 (589)
Q Consensus 243 ~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~p~~~~~~~l~~--------------- 303 (589)
++++|...|..+...+ ......++..+.. ..+........+..+ ..|..........
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9988888776554311 1111111111111 122222222222110 0011111100000
Q ss_pred ------------H------HHhcCChhHHHHHHHHHHHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C
Q 007808 304 ------------A------CARLGALDFSKWVHVYAEYNG--YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-D 360 (589)
Q Consensus 304 ------------~------~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~ 360 (589)
. ....+++++|...++.+.+.+ .+.....+..+...+...|++++|+..|++..+ | +
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 0 011245666777777666654 123344566666667777777777777776653 2 2
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|++.+.. .+.+...+..+..
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 3456666666777777777777777776642 224556666666777777777777777776531 2223555666667
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH-------HHHHhhc
Q 007808 441 LLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML-------SNIYGDL 511 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------~~~~~~~ 511 (589)
++.+.|++++|+..+++. ...| +...++.+...+...|++++|++.|++++++.|.+...+..+ +..+...
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 777777777777777765 3334 355666666777777777777777777777776543332221 1122335
Q ss_pred CChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 512 GRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 512 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
|++++|++++++.. +++|++..++..+|+++...|+.++|+.+....
T Consensus 522 ~~~~eA~~~~~kAl------------------------~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 522 QDFIEAENLCEKAL------------------------IIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred hhHHHHHHHHHHHH------------------------hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777654 788999999999999999999999998876543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-20 Score=180.61 Aligned_cols=501 Identities=13% Similarity=0.052 Sum_probs=319.7
Q ss_pred HHHHccCChhHHHHHhhcCCCCCcccHHHHHHH---HHcC---CChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC
Q 007808 42 TACAQLKQMTYARKMFDKITDQNVVSWNAMFNG---YAQN---EFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINA 115 (589)
Q Consensus 42 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~---~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 115 (589)
..+.+.|+.+.|+..|+...+.|+..-++++.. -... ..+..+..++...-... .-|++..+.|.+-+.-.|+
T Consensus 207 ~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~d 285 (1018)
T KOG2002|consen 207 HCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKD 285 (1018)
T ss_pred hHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhccc
Confidence 445566666666666666555333222222211 1111 23344444444443332 3456667777777777777
Q ss_pred hHHHHHHHHHHHHhCCC--CchHHHhHHHHHHHcCCChHHHHHHHccCCC--CC--eehHHHHHHHHHhCCCHHHHHHHH
Q 007808 116 LREGEELHCLVLKNGFR--ANIFVGTALIELYSTGKAIEAAYKVFGEMDE--RN--VVVWTSMINGYISCGDIVSARCLF 189 (589)
Q Consensus 116 ~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~a~~~~ 189 (589)
++.+..+...++..... .-...|--+.++|-..|++++|...|.+... ++ +..+-.+...|.+.|+++.+...|
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~f 365 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCF 365 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHH
Confidence 77777777777664311 1123355567777777888888777766654 22 334556777777788887777777
Q ss_pred HhCCCC---ChhHHHHHHHHHhcCC----ChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCC----
Q 007808 190 ELAPER---DVILWNTIVSGYIDVR----NMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMP---- 255 (589)
Q Consensus 190 ~~~~~~---~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---- 255 (589)
+...+. +..+...+...|+..+ ..+.|..++.+..+ .|...|-.+...+...+-+.. +..|..+.
T Consensus 366 Ekv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 366 EKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILE 444 (1018)
T ss_pred HHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHH
Confidence 766532 4456666666666554 45666666666655 345566666665554443332 44443332
Q ss_pred ----CCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCcH------HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 256 ----ERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGR--VFPND------ATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 256 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
+..+...|.+...+...|++.+|...|......-. ..+|. .+-..+....-..++++.|.+.|..+.+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 24556677777788888888888888877765410 12222 2333455566667788888888888877
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHhHH
Q 007808 324 NGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNA-GEMPDGITF 399 (589)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~ 399 (589)
.. |.-+..|-.++...-..+...+|...++... ..++..+..+...+....++..|.+-|....+. ...+|..+.
T Consensus 525 eh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 525 EH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred HC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 63 3334445555434444567778888887665 346777777777888888888887766665542 123566666
Q ss_pred HHHHHHHhcc------------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHH
Q 007808 400 IGILCACTHM------------GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP--IEADAV 465 (589)
Q Consensus 400 ~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~ 465 (589)
..|.+.|.+. +..++|+++|.++++ ..+.|...-|.+.-.++..|++.+|..+|.+.. ......
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d 681 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED 681 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc
Confidence 6666654432 346778888887765 334566677778888888888888888888873 222445
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcc--CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCe
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTEL--EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEV 543 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (589)
+|-.+.++|..+|++..|+++|+.+.+. ..+++.+...|++++.+.|++.+|.+.+....
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~------------------ 743 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR------------------ 743 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH------------------
Confidence 6778888888888888898888888873 23567788888888888888888888877665
Q ss_pred eeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 544 VMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 544 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
.+.|.++....+++-+.++++.
T Consensus 744 ------~~~p~~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 744 ------HLAPSNTSVKFNLALVLKKLAE 765 (1018)
T ss_pred ------HhCCccchHHhHHHHHHHHHHH
Confidence 6778888888888887776653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-20 Score=191.91 Aligned_cols=379 Identities=8% Similarity=-0.053 Sum_probs=290.2
Q ss_pred HHHhCCCHHHHHHHHHhCCCC------ChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHH
Q 007808 175 GYISCGDIVSARCLFELAPER------DVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVE 245 (589)
Q Consensus 175 ~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 245 (589)
.+.++.+|+.-.-+|....+. +......++..+.+.|+.++|..+++.... .+...+..++......|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHH
Confidence 345677777776666655432 233456677788899999999999988875 34455666677778899999
Q ss_pred HHHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007808 246 ECKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAE 322 (589)
Q Consensus 246 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (589)
+|...|+++.+ | +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...+..+.
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 99999999876 3 45678888899999999999999999999854 3446677888889999999999999999887
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhH
Q 007808 323 YNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGIT 398 (589)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 398 (589)
.... .+...+..+ ..+...|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+...
T Consensus 172 ~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 7653 333344333 3478899999999999987643 23344556778889999999999999999853 335667
Q ss_pred HHHHHHHHhccCcHHH----HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHH
Q 007808 399 FIGILCACTHMGLVEE----GLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLG 472 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 472 (589)
+..+...+...|++++ |...++++... .+.+...+..+...+.+.|++++|+..++++ ...|+ ...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7788889999999986 79999988752 2334678889999999999999999999988 44564 556667778
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccC
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRE 552 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (589)
++.+.|++++|...|+++++.+|+++..+..++.++...|++++|++.++++.+.... ...
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~-------------------~~~ 387 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS-------------------HLP 387 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh-------------------hch
Confidence 8999999999999999999999997777777889999999999999999998522211 234
Q ss_pred CCchHHHHHHHHHHHHcccCCCCcchH
Q 007808 553 LDRKSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 553 p~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
++..++...+...+...+..++...+.
T Consensus 388 ~~~~ea~~~~~~~~~~~~~~~~~~~W~ 414 (656)
T PRK15174 388 QSFEEGLLALDGQISAVNLPPERLDWA 414 (656)
T ss_pred hhHHHHHHHHHHHHHhcCCccchhhHH
Confidence 444556666777776665554433443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-19 Score=187.13 Aligned_cols=156 Identities=12% Similarity=0.069 Sum_probs=111.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC-
Q 007808 368 ISGLAMHGRGAGALSLFHEMKNAGEMPD-----GITFIGILCACTHMGLVEEGLSYFQSMAMDYS----------IVPQ- 431 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~- 431 (589)
..+|...|++++|+..|+++.+. .|. ......+..++...|++++|.++++.+..... -.|+
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 44555666666666666665542 221 12334444455666666666666666543210 1233
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHH
Q 007808 432 --IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 432 --~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
...+..++..+...|++++|++.++++ ...| +...+..+...+...|++++|++.++++++++|+++..+..++..
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 234556778888999999999999987 3344 566777788888999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHhh
Q 007808 508 YGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~ 525 (589)
+.+.|++++|+++++++.
T Consensus 437 al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 999999999999999986
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-20 Score=184.30 Aligned_cols=291 Identities=15% Similarity=0.100 Sum_probs=212.0
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHhcCC
Q 007808 237 GYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPN---DATIVTVLSACARLGA 310 (589)
Q Consensus 237 ~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~ 310 (589)
.+...|++++|...|+++.+ | +..++..+...+...|++++|+.+++.+...+ ..++ ...+..+...+.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCC
Confidence 34455666666666666654 2 33456666666677777777777777666543 1111 2345566666677777
Q ss_pred hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc--------chHHHHHHHHHhCCChHHHHH
Q 007808 311 LDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDL--------ITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~ 382 (589)
++.|..++..+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.++ ..+..++..+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777766542 34556666777777777777777777776653211 134567777888999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHhhC-C
Q 007808 383 LFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ--IEHYGCMVDLLARAGRLAEAVDFVKRM-P 459 (589)
Q Consensus 383 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 459 (589)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++... .|+ ...++.++.+|.+.|++++|...++++ .
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998753 234567778888999999999999999998753 243 456788899999999999999999988 4
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh---cCChHHHHHHHHHhhhCCCccCCc
Q 007808 460 IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD---LGRWKDVARIKVAMRDTGFKKLPG 534 (589)
Q Consensus 460 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 534 (589)
..|+...+..++..+.+.|++++|...++++++..|+++ .+..+...+.. .|+.++++.++++|.+++++++|.
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 577777778888999999999999999999999999865 45555555543 569999999999999999999884
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-19 Score=182.13 Aligned_cols=363 Identities=10% Similarity=-0.057 Sum_probs=288.8
Q ss_pred HHcCCChHHHHHHHccCCC------CCeehHHHHHHHHHhCCCHHHHHHHHHhCCC---CChhHHHHHHHHHhcCCChHH
Q 007808 145 YSTGKAIEAAYKVFGEMDE------RNVVVWTSMINGYISCGDIVSARCLFELAPE---RDVILWNTIVSGYIDVRNMIE 215 (589)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~ 215 (589)
+.+..+++.---.|..-.+ .+..-...++..+.+.|++++|..+++.... .+...+..++.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 3456677766666666554 1333456678889999999999999988753 256677778888889999999
Q ss_pred HHHHhcccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 007808 216 ARKLFDQMPK--K-DVISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEG 289 (589)
Q Consensus 216 a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 289 (589)
|...++++.. | +...+..+...+...|++++|...|+++.+ | +...+..+...+...|++++|...++.+....
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 9999999975 3 556788888999999999999999999876 3 46678889999999999999999999988765
Q ss_pred CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHH
Q 007808 290 RVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNT 366 (589)
Q Consensus 290 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 366 (589)
+.+...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...|++... .+...+..
T Consensus 175 --P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 175 --PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred --CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 2223333333 45788999999999999988765444455556667888999999999999998763 35667888
Q ss_pred HHHHHHhCCChHH----HHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007808 367 IISGLAMHGRGAG----ALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL 441 (589)
Q Consensus 367 l~~~~~~~~~~~~----A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (589)
+...+...|++++ |+..|++..+. .| +...+..+...+...|++++|...++++... .+.+...+..+..+
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~ 327 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 9999999999986 89999999984 45 5668889999999999999999999999753 23345677788999
Q ss_pred HHhcCCHHHHHHHHhhC-CCCCCHHHH-HHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHH
Q 007808 442 LARAGRLAEAVDFVKRM-PIEADAVIW-ANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVAR 519 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 519 (589)
|.+.|++++|++.++++ ...|+...+ ..+..++...|+.++|...|+++++.+|++. ...+++|..
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 99999999999999988 456765443 3345778999999999999999999999864 345667777
Q ss_pred HHHHhhh
Q 007808 520 IKVAMRD 526 (589)
Q Consensus 520 ~~~~~~~ 526 (589)
.+.+..+
T Consensus 396 ~~~~~~~ 402 (656)
T PRK15174 396 ALDGQIS 402 (656)
T ss_pred HHHHHHH
Confidence 7776653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-18 Score=171.81 Aligned_cols=469 Identities=15% Similarity=0.066 Sum_probs=298.4
Q ss_pred hhHHHHHhhcCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHhhhCC--CCCCcccHHHHHHHHhccCChHHHHHHHH
Q 007808 50 MTYARKMFDKITDQ---NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLD--AMPNCFTFPIVLKSCVKINALREGEELHC 124 (589)
Q Consensus 50 ~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 124 (589)
.+.|...|....+. |+-..-.-.......|++..|+.+|....... .+||.. ..+..++.+.++.+.|...|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 47777777766542 33222222233456688888888888865442 334433 233355567788888888888
Q ss_pred HHHHhCCCCchHHHhHHHHHHHcCC---ChHHHHHHHccCC---CCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCC--
Q 007808 125 LVLKNGFRANIFVGTALIELYSTGK---AIEAAYKVFGEMD---ERNVVVWTSMINGYISCGDIVSARCLFELAPERD-- 196 (589)
Q Consensus 125 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 196 (589)
..++.++ .++.++-.|.-.-.... .+..+...+...- ..++++.+.|.+-|...|+++.+..+...+....
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8888653 23334433333222222 3445555555443 2577888888888888888888888887765432
Q ss_pred ----hhHHHHHHHHHhcCCChHHHHHHhcccCC--CCh--hhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHH
Q 007808 197 ----VILWNTIVSGYIDVRNMIEARKLFDQMPK--KDV--ISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGL 265 (589)
Q Consensus 197 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l 265 (589)
...|..+.++|-..|++++|.+.|.+..+ ++. ..+..+...|.+.|+++.+...|+.+.+ | +..+...|
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 24577888888888888888888887775 333 3455677888888888888888888775 3 45566666
Q ss_pred HHHHHhCC----ChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH----HcCCCCChhHHHHHH
Q 007808 266 IGGYANNG----LFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAE----YNGYQGNVCVGNALI 337 (589)
Q Consensus 266 ~~~~~~~g----~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~ 337 (589)
...|...+ ..++|..++.+..+.- +.|...|..+...+.... +..+...|..+. ..+.++.+...|.+.
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 66676664 4566777777776653 445566666665555443 333355554433 445557777888888
Q ss_pred HHHHhcCChHHHHHHHhhCCCC-------Cc------chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh-HHHHHH
Q 007808 338 DMYAKCGIIENAVDVFNSMDTK-------DL------ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI-TFIGIL 403 (589)
Q Consensus 338 ~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~ 403 (589)
..+...|.+.+|...|+..... +. .+-..+...+-..++++.|.+.|....+. .|+-. .|.-++
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~ 537 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhh
Confidence 8888888888888888765421 22 12233445555667788888888887774 45432 343443
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHHHh----
Q 007808 404 CACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM----PIEADAVIWANLLGSCR---- 475 (589)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~---- 475 (589)
......+...+|...++.... ....++..+..+.+.+.+...+..|.+-|... ...+|..+.-+|.+.|.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 233344667777777777765 33444555565667777777777776643333 23455555555554432
Q ss_pred --------cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 476 --------VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 476 --------~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
..+..++|++.|.++++.+|.|..+-+.++-++...|++.+|..+|.++.+..
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 22346677777777777778777777777777777788888888777776544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-19 Score=191.87 Aligned_cols=384 Identities=10% Similarity=0.036 Sum_probs=246.4
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCC---CChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHH
Q 007808 172 MINGYISCGDIVSARCLFELAPE---RDVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVE 245 (589)
Q Consensus 172 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 245 (589)
.+......|+.++|++++..... .+...+..+...+...|++++|..++++..+ .+...+..+...+...|+.+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34444445555555554444332 1233455555555556666666666655432 23344455555566666666
Q ss_pred HHHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007808 246 ECKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAE 322 (589)
Q Consensus 246 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 322 (589)
+|...++++.+ | +.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|...++.+.
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 66666666543 2 233 5555556666666666666666666643 2223333444555555566666665554433
Q ss_pred HcCCCCCh------hHHHHHHHHHH-----hcCCh---HHHHHHHhhCCC---CCcch---H----HHHHHHHHhCCChH
Q 007808 323 YNGYQGNV------CVGNALIDMYA-----KCGII---ENAVDVFNSMDT---KDLIT---W----NTIISGLAMHGRGA 378 (589)
Q Consensus 323 ~~~~~~~~------~~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~---~~~~~---~----~~l~~~~~~~~~~~ 378 (589)
. .|+. .....++.... ..+++ ++|++.++.+.+ .++.. + ...+.++...|+++
T Consensus 178 ~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 178 L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 2 1110 01111222221 12223 667777766652 22211 1 11133456779999
Q ss_pred HHHHHHHHHHHCCCC-CCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC--ChHHHHHHHHHHHhcCCHHHHHHHH
Q 007808 379 GALSLFHEMKNAGEM-PDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP--QIEHYGCMVDLLARAGRLAEAVDFV 455 (589)
Q Consensus 379 ~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~ 455 (589)
+|+..|+++.+.+.+ |+. ....+..+|...|++++|+..|+++.......+ .......+..++...|++++|.+.+
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999986532 332 222357789999999999999999865322111 1345666777889999999999999
Q ss_pred hhCC-CCC-------------CH---HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH
Q 007808 456 KRMP-IEA-------------DA---VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 456 ~~~~-~~p-------------~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
+++. ..| +. ..+..+...+...|+.++|++.++++++..|+++..+..++.++...|++++|+
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 9873 223 21 234456678889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 519 RIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
+.++++. +++|+++..+..++.++...|+.++|++.+.-+.+.+
T Consensus 414 ~~l~~al------------------------~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 414 NELKKAE------------------------VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHH------------------------hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999986 7889999999999999999999999988887776543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-19 Score=174.16 Aligned_cols=283 Identities=14% Similarity=0.104 Sum_probs=213.4
Q ss_pred HHHhcCCChHHHHHHhcccCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-C------chhHHHHHHHHHhCCC
Q 007808 205 SGYIDVRNMIEARKLFDQMPK--K-DVISWNTMLSGYANNGDVEECKRLFEEMPER-N------VFSWNGLIGGYANNGL 274 (589)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~~g~ 274 (589)
..+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+... + ...+..++..|...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 344556666677777766654 2 3345666777777777777777777766542 1 1346677778888888
Q ss_pred hHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChHHHH
Q 007808 275 FFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN----VCVGNALIDMYAKCGIIENAV 350 (589)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 350 (589)
+++|..+|+++.+.. +++..++..++..+.+.|++++|...+..+.+.+..+. ...+..++..+.+.|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888888888887653 34566777788888888888888888888777653322 124556777888899999999
Q ss_pred HHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcC
Q 007808 351 DVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYS 427 (589)
Q Consensus 351 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 427 (589)
..|+++.+ | +...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++...
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 99988763 2 455777888999999999999999999987532222456788899999999999999999998643
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHc
Q 007808 428 IVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRV---YKNVELAELALERLTE 492 (589)
Q Consensus 428 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 492 (589)
.|+...+..++..+.+.|++++|..+++++ ...|+...++.++..+.. .|+.+++...++++++
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 577777788999999999999999999887 567999888888876553 5588889888888876
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-17 Score=172.89 Aligned_cols=425 Identities=10% Similarity=-0.006 Sum_probs=300.6
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCee-hHHHH--HHHHHhCCCHHHH
Q 007808 109 SCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVV-VWTSM--INGYISCGDIVSA 185 (589)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~a 185 (589)
...+.|+++.|.+.|++.++..+.-...++ .++..+...|+.++|+..+++...|+.. .+..+ ...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345889999999999999886533222344 7888888899999999999999876433 34444 5578888999999
Q ss_pred HHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccCC--CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-
Q 007808 186 RCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMPK--KDVISWNTMLSGYANNGDVEECKRLFEEMPE--R- 257 (589)
Q Consensus 186 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~- 257 (589)
+++|+.+.+. ++..+..++..+...++.++|++.++++.+ |+...+..++..+...++..+|++.++++.+ |
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 9999988753 566777888888999999999999999886 5544554444444445666669999998876 4
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHH--HHHHHHhc---------CCh---hHHHHHHHHHHH
Q 007808 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVT--VLSACARL---------GAL---DFSKWVHVYAEY 323 (589)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~---------~~~---~~a~~~~~~~~~ 323 (589)
+...+..+..++.+.|-...|+++..+-..- +.+...-... .+.-..+. .++ +.|..-++.+..
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 4566777888888999988888776653221 1222211100 01111111 122 233344444443
Q ss_pred c-C-CCCChhH----HHHHHHHHHhcCChHHHHHHHhhCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-
Q 007808 324 N-G-YQGNVCV----GNALIDMYAKCGIIENAVDVFNSMDTK----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGE- 392 (589)
Q Consensus 324 ~-~-~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~- 392 (589)
. + .|+.... ..-.+-++...|++.++++.|+.+..+ ...+-..+.++|...+++++|+.+|+.+.....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 1 1 1222122 223345677888999999999988843 234566788889999999999999999876431
Q ss_pred ----CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcC----------CCCC---hHHHHHHHHHHHhcCCHHHHHHHH
Q 007808 393 ----MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYS----------IVPQ---IEHYGCMVDLLARAGRLAEAVDFV 455 (589)
Q Consensus 393 ----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 455 (589)
.++......|.-++...+++++|..+++.+..... -.|+ ...+..++..+...|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22333356788888999999999999998865211 0122 233445677788899999999999
Q ss_pred hhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 456 KRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 456 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
+++ ...| |......+...+...|.+.+|++.++.+..++|++..+....+.++...|+|++|.++.+.+.
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~-------- 511 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI-------- 511 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH--------
Confidence 888 3344 677777788888999999999999988888999999999999999999999999999988885
Q ss_pred ccceeeeCCeeeeeccccCCCchHHHH
Q 007808 534 GCSSIEVNEVVMLGCLSRELDRKSIVR 560 (589)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~p~~~~~~~ 560 (589)
+..|+++....
T Consensus 512 ----------------~~~Pe~~~~~~ 522 (822)
T PRK14574 512 ----------------SRSPEDIPSQE 522 (822)
T ss_pred ----------------hhCCCchhHHH
Confidence 78889987664
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-17 Score=167.78 Aligned_cols=423 Identities=12% Similarity=0.011 Sum_probs=316.5
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC
Q 007808 72 FNGYAQNEFHRTVVVLFTQMKKLDAMPNCF-TFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA 150 (589)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 150 (589)
+-...+.|++..|++.|++..+.. |+.. ....++..+...|+.++|...+++.... .+........+...|...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCC
Confidence 334568999999999999998764 5542 2227888888889999999999999721 12223334444678889999
Q ss_pred hHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChh--HHHHHHHHHhcCCChHHHHHHhcccCC
Q 007808 151 IEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPERDVI--LWNTIVSGYIDVRNMIEARKLFDQMPK 225 (589)
Q Consensus 151 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~ 225 (589)
+++|+++++++.+ .+...+..++..+...++.++|++.++.+.+.++. .+..++..+...++..+|++.++++.+
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999999986 24566778889999999999999999999876544 343333344446666669999999986
Q ss_pred --C-ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhH--HHHHHHHHhC---------CC---hHHHHHHHHHH
Q 007808 226 --K-DVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSW--NGLIGGYANN---------GL---FFEVLDAFKRM 285 (589)
Q Consensus 226 --~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~--~~l~~~~~~~---------g~---~~~A~~~~~~~ 285 (589)
| +...+..+...+.+.|-...|.++..+-+. +....+ ...+.-.++. .+ .+.|+.-++.+
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 566778888999999999999999887664 111111 1111112211 12 34566666776
Q ss_pred HHcCCCCCc-HH----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-
Q 007808 286 LTEGRVFPN-DA----TIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK- 359 (589)
Q Consensus 286 ~~~~~~~p~-~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 359 (589)
...-+..|. .. ...-.+-++...++..++...++.+...+.+....+-.++.++|...+++++|..+|..+..+
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 653212232 22 223455678889999999999999999887766778889999999999999999999988532
Q ss_pred --------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----------CCCH--h-HHHHHHHHHhccCcHHHHHH
Q 007808 360 --------DLITWNTIISGLAMHGRGAGALSLFHEMKNAGE-----------MPDG--I-TFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 360 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~~--~-~~~~l~~~~~~~g~~~~A~~ 417 (589)
+......|..+|...+++++|..+++++.+... .||. . .+..++..+.-.|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 222357789999999999999999999998311 1221 1 24456677889999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 418 YFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
.++++.. .-+-|......+.+.+...|.+.+|++.++.+ ...|+ ..+....+.++...|++.+|....+.+.+..|
T Consensus 438 ~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 438 KLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 9999975 34557888899999999999999999999877 45664 45566677888899999999999999999999
Q ss_pred CCCc
Q 007808 496 KNPA 499 (589)
Q Consensus 496 ~~~~ 499 (589)
+++.
T Consensus 516 e~~~ 519 (822)
T PRK14574 516 EDIP 519 (822)
T ss_pred Cchh
Confidence 9874
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-17 Score=148.96 Aligned_cols=272 Identities=15% Similarity=0.110 Sum_probs=212.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCchhHHH----HHH-HHHh-CCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 007808 236 SGYANNGDVEECKRLFEEMPERNVFSWNG----LIG-GYAN-NGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLG 309 (589)
Q Consensus 236 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----l~~-~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 309 (589)
..|.+.|+++.|.++++-..+.|..+-.. |-. -|.+ -.++..|..+-+..+... .-+......-.+.....|
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecC
Confidence 45778999999999999888755433222 222 2222 346778888777776654 233444444444456679
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 007808 310 ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHE 386 (589)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 386 (589)
++++|.+.|+++...+-......|| +.-.+...|++++|++.|-++. ..+..+...+.+.|-...++..|++++-+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 9999999999998765443344444 5556788999999999998776 45777888888999999999999999977
Q ss_pred HHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH
Q 007808 387 MKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAV 465 (589)
Q Consensus 387 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 465 (589)
.... ++.|+.....|...|-+.|+-.+|.+++-..-+ -++.+..+...|..-|....-+++|+.+|++. .+.|+..
T Consensus 584 ~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 584 ANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred hccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 7653 344677888899999999999999998755433 45667888888999999999999999999998 5799999
Q ss_pred HHHHHH-HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 466 IWANLL-GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 466 ~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
-|..++ +++.+.|++.+|.+.|+...+.-|.+..++..|++++...|.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999888 556899999999999999999999999999999999988885
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-14 Score=137.85 Aligned_cols=523 Identities=12% Similarity=0.064 Sum_probs=405.2
Q ss_pred cccHHHHHHhccCCchH--------------HHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCC--CCc
Q 007808 2 KDTTGAHSEQLETTKHL--------------HQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITD--QNV 65 (589)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~ 65 (589)
|.+.....+.|++.-.+ .+++...+++ ++.++..|. +.....+.++|+-++++..+ |.
T Consensus 335 K~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAveccp~- 408 (913)
T KOG0495|consen 335 KTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVECCPQ- 408 (913)
T ss_pred HHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHhccc-
Confidence 34455556666654332 3445444443 244444443 33344566778888877665 22
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH----HHhCCCCchHHHhHH
Q 007808 66 VSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLV----LKNGFRANIFVGTAL 141 (589)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l 141 (589)
-..|.-++++..-++.|..+++..++. ++-+...|.+....--..|+.+.+.++.++- ...|+..+..-|-.=
T Consensus 409 --s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 409 --SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 123445666777888999999998864 6777888888877777889998888887664 446777777777777
Q ss_pred HHHHHcCCChHHHHHHHccCCC------CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCC
Q 007808 142 IELYSTGKAIEAAYKVFGEMDE------RNVVVWTSMINGYISCGDIVSARCLFELAPER---DVILWNTIVSGYIDVRN 212 (589)
Q Consensus 142 i~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 212 (589)
...+-..|..-.+..+...... .-..+|..-.+.|.+.+.++-|..+|....+. +...|......--..|.
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCc
Confidence 7777777877777777766653 23358888999999999999999999877654 55677777776777899
Q ss_pred hHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007808 213 MIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRML 286 (589)
Q Consensus 213 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (589)
.++...++++... .....|-.....+...|++..|..++...-+ .+...|-.-+..-....+++.|..+|.+..
T Consensus 566 ~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 566 RESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 9999999988875 3456677777888889999999999998875 355778888888899999999999999998
Q ss_pred HcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcch
Q 007808 287 TEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLIT 363 (589)
Q Consensus 287 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 363 (589)
..+ |+...|.--+..-.-.++.++|.+++++..+. ++.-...|-.+.+.+-+.++++.|.+.|..-.+ ..+..
T Consensus 646 ~~s---gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipL 721 (913)
T KOG0495|consen 646 SIS---GTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPL 721 (913)
T ss_pred ccC---CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchH
Confidence 855 78888877777777789999999999988876 466677889999999999999999999987664 25567
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLA 443 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 443 (589)
|-.|...--+.|+.-+|..+|++..-.+ +-+...|...|+.-.+.|+.+.|..+..+++++ .+.+...|..-|...-
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhcc
Confidence 8888888888899999999999998764 447788999999999999999999999998874 4556678888888888
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 444 RAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
+.++-..+.+.+++... |+.....+...+....++++|.+-|.+++..+|++..+|..+-..+.+.|.-++-.+++++
T Consensus 799 ~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred CcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 88888888888888864 4455666777788889999999999999999999999999999999999999998898888
Q ss_pred hhhCCCccCCccceeeeCCee
Q 007808 524 MRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~ 544 (589)
.. ..+|.-|..|....+.+
T Consensus 877 c~--~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 877 CE--TAEPTHGELWQAVSKDI 895 (913)
T ss_pred Hh--ccCCCCCcHHHHHhhhH
Confidence 74 23445565565554443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-17 Score=157.08 Aligned_cols=273 Identities=13% Similarity=0.104 Sum_probs=221.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChHHHH
Q 007808 273 GLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGY--QGNVCVGNALIDMYAKCGIIENAV 350 (589)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 350 (589)
-+..+|+..|...... +.-.......+..+|...+++++++.+|+.+.+... -.+..+|.+.+--+-+.-.+..--
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 4578899999985443 334456777788899999999999999999887641 235667776654333221221111
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC
Q 007808 351 DVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIV 429 (589)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 429 (589)
+-+-.+.+..+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+.++.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----- 483 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----- 483 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----
Confidence 222223345788999999999999999999999999998 577 677888888888889999999999998873
Q ss_pred CChHHHH---HHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH
Q 007808 430 PQIEHYG---CMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML 504 (589)
Q Consensus 430 ~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 504 (589)
.|+.+|+ .|+-.|.+.++++.|+-.|+++ .+.| +......++..+.+.|+.++|++++++++.++|.|+-..+..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 5555555 5677899999999999999998 6777 556667777889999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcch
Q 007808 505 SNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTF 578 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (589)
+.++...+++++|+..+++++ ++-|+++.++.++|.+|.++|+...|+-.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk------------------------~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELK------------------------ELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHH------------------------HhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 999999999999999999997 78899999999999999999999877643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-14 Score=142.81 Aligned_cols=524 Identities=11% Similarity=0.023 Sum_probs=335.6
Q ss_pred HHHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCh
Q 007808 40 IITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINAL 116 (589)
Q Consensus 40 l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 116 (589)
..+.+.-.|+.++|.+++.++.+ .+..+|..|...|-+.|+.+++...+-...... +-|...|..+.......|.+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 33444445999999999999876 466789999999999999999988775554443 44668899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCe-e-------hHHHHHHHHHhCCCHHHHHHH
Q 007808 117 REGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNV-V-------VWTSMINGYISCGDIVSARCL 188 (589)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~-------~~~~l~~~~~~~g~~~~a~~~ 188 (589)
.+|.-.|.+.++.. +++...+-.-+..|-+.|+...|.+-|.++.+.++ + .--..+..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999986 44555555567889999999999999988876333 1 223345667778888999988
Q ss_pred HHhCCCC-----ChhHHHHHHHHHhcCCChHHHHHHhcccCC-------------------------------CChhh-H
Q 007808 189 FELAPER-----DVILWNTIVSGYIDVRNMIEARKLFDQMPK-------------------------------KDVIS-W 231 (589)
Q Consensus 189 ~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------------~~~~~-~ 231 (589)
++..... +...++.++..+.+...++.+......... ++..+ +
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 8876642 455778888888888888888776654431 12222 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 007808 232 NTMLSGYANNGDVEECKRLFEEMPE----RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR 307 (589)
Q Consensus 232 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 307 (589)
..+--...+.+...+++.-+-.... .++..|..+..+|.+.|++.+|+.+|..+.... .--+...|..+..++..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE-GYQNAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-cccchhhhHHHHHHHHH
Confidence 1111222233344444333322222 345678889999999999999999999998876 44456688899999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc------------hHHHHHHHHHhCC
Q 007808 308 LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLI------------TWNTIISGLAMHG 375 (589)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~l~~~~~~~~ 375 (589)
.|..++|.+.|+..+... |.+......|...+.+.|+.++|.+++..+..||.. ..-.....+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999999998875 567777888999999999999999999998766521 1222344566777
Q ss_pred ChHHHHHHHHHHHHCC-----CCC-----------------CHhHHHHHHHHHhccCcHHHHHHHHH-----HhHHhcCC
Q 007808 376 RGAGALSLFHEMKNAG-----EMP-----------------DGITFIGILCACTHMGLVEEGLSYFQ-----SMAMDYSI 428 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~-----~~~~~~~~ 428 (589)
+.++=+.+...|.... +-| ...+...++.+-.+.++.....+-.. ......++
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 7776555444443211 111 11122233333333333222211111 01111132
Q ss_pred CCC--hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHH---HHH-HHHHHHhcCCCHHHHHHHHHHHHcc-----
Q 007808 429 VPQ--IEHYGCMVDLLARAGRLAEAVDFVKRMP----IEADAV---IWA-NLLGSCRVYKNVELAELALERLTEL----- 493 (589)
Q Consensus 429 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~---~~~-~l~~~~~~~g~~~~A~~~~~~~~~~----- 493 (589)
.-+ -..+.-++..+.+.+++++|+.+...+. +.-+.. .+. ..+.+....+++..|...++.++..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 222 2344556777888888888888777662 111221 222 2335556778888888888888775
Q ss_pred CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcccee------eeCC-----eeeeeccccCCCchHHHHHH
Q 007808 494 EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSI------EVNE-----VVMLGCLSRELDRKSIVRAE 562 (589)
Q Consensus 494 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~p~~~~~~~~l 562 (589)
+|.....|+...+...+.|+----.+++.++...+-+.+|....+ ..+. .....+...+|++|-+...+
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 555455555455555555554444444444432221111211110 0000 01111668999999998887
Q ss_pred HHHHH
Q 007808 563 ANMIK 567 (589)
Q Consensus 563 ~~~~~ 567 (589)
|-++-
T Consensus 781 glafi 785 (895)
T KOG2076|consen 781 GLAFI 785 (895)
T ss_pred HHHHH
Confidence 76654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.9e-18 Score=157.19 Aligned_cols=254 Identities=14% Similarity=0.114 Sum_probs=99.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCC
Q 007808 300 TVLSACARLGALDFSKWVHVYAEYNG-YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHG 375 (589)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 375 (589)
.+...+.+.|++++|.+++....... .+.+...+..+.......++.+.|.+.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 33455556666666666664433332 2334444555555556666777777777766632 33455555555 5777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFV 455 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 455 (589)
++++|.+++.+..+. .++...+..++..+...++++++..+++.+......+++...|..++..+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 778887777766553 345555666777777778888888887776544344566777777778888888888888888
Q ss_pred hhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 456 KRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 456 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
+++ ...| |......++..+...|+.+++.++++...+..|+++..+..++.+|...|+.++|+..+++..
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~-------- 241 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL-------- 241 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH--------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc--------
Confidence 777 3455 356667777778888888887788777777777777788888888888888888888888775
Q ss_pred ccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHh
Q 007808 534 GCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
+.+|+|+.++..+|.++...|+.++|.++..
T Consensus 242 ----------------~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 242 ----------------KLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp ----------------HHSTT-HHHHHHHHHHHT-------------
T ss_pred ----------------ccccccccccccccccccccccccccccccc
Confidence 6678888888888888888888887776654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-12 Score=124.88 Aligned_cols=451 Identities=11% Similarity=0.049 Sum_probs=296.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHH
Q 007808 112 KINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCL 188 (589)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~ 188 (589)
...+.+.|.-++....+. ++.+...+. +|++..-++.|..++++..+ .+...|.+-...--.+|+.+...++
T Consensus 388 elE~~~darilL~rAvec-cp~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVEC-CPQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHh-ccchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 345555677777777665 233333333 34455566777777766654 4666777777777777877777777
Q ss_pred HHhCC--------CCChhHHHHHHHHHhcCCChHHHHHHhcccCC------CChhhHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 189 FELAP--------ERDVILWNTIVSGYIDVRNMIEARKLFDQMPK------KDVISWNTMLSGYANNGDVEECKRLFEEM 254 (589)
Q Consensus 189 ~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 254 (589)
+.+.. ..+...|-.=...|-..|..-.+..+...... .-..+|..-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 76543 12445555556666666666666666555442 23456777778888888888888888877
Q ss_pred CC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 007808 255 PE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVC 331 (589)
Q Consensus 255 ~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 331 (589)
.+ .+...|...+..--..|..++-..+|.++...- +-....+.......-..|+...|..++..+.+.. +.+..
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnsee 619 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEE 619 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHH
Confidence 76 244566666655556677888888888888763 3333444445555667788888888888888775 44677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhc
Q 007808 332 VGNALIDMYAKCGIIENAVDVFNSMD--TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTH 408 (589)
Q Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 408 (589)
++-+-+.......+++.|..+|.+.. .+....|..-+...--.++.++|+.++++.++. -|+ ...|..+.+.+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 77777788888888888888888765 456666766666666678888888888887773 454 3466777777888
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELA 486 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 486 (589)
.++.+.|...|..-.+ ..+-.+..|..|.+.=.+.|..-+|..++++.. .+.+...|...+..-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 8888888887765543 233345677777777778888888888888773 333667777778887888888888888
Q ss_pred HHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc-------ceeeeCCee----eeeccccCCCc
Q 007808 487 LERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC-------SSIEVNEVV----MLGCLSRELDR 555 (589)
Q Consensus 487 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----~~~~~~~~p~~ 555 (589)
..++++--|.+...|..-+++.-+.++-......+++- ..+|+. .|.+..-.- -..+++.+|++
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 88887776665555555555555555544444444432 122211 011111100 11156889999
Q ss_pred hHHHHHHHHHHHHcccCCCCcchH
Q 007808 556 KSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 556 ~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
.+++..+=.-+...|..++....+
T Consensus 851 GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHH
Confidence 999887777777777655544443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-14 Score=132.84 Aligned_cols=439 Identities=11% Similarity=0.055 Sum_probs=277.4
Q ss_pred HHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCch----HHHhHHHHHH
Q 007808 71 MFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFP-IVLKSCVKINALREGEELHCLVLKNGFRANI----FVGTALIELY 145 (589)
Q Consensus 71 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~ 145 (589)
|..-|..+....+|+..|+-+.+...-|+...+. .+...+.+.+.+.+|.+.|+..+..-+..+. ...+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3445666677788888888888777777766543 3345667778888888888887776433332 2344444566
Q ss_pred HcCCChHHHHHHHccCCC--CCeehHHHHHHHHHhCCCHHHHHHHHHhCCC----------------CChhHHHH-----
Q 007808 146 STGKAIEAAYKVFGEMDE--RNVVVWTSMINGYISCGDIVSARCLFELAPE----------------RDVILWNT----- 202 (589)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~----- 202 (589)
.+.|.++.|+.-|+...+ |+..+-..|+-++...|+-++..+.|..+.. |+....+.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 778888888888877665 5555545555566667777777777766642 11111111
Q ss_pred HHHHHhcCCC--hHHHHHHhcccCC----CChh-hHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCCh
Q 007808 203 IVSGYIDVRN--MIEARKLFDQMPK----KDVI-SWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLF 275 (589)
Q Consensus 203 l~~~~~~~g~--~~~a~~~~~~~~~----~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 275 (589)
.++-+-+.+. .++++-.-.++.. |+-. .+.-.+...-.....+-|.+ . --.-...|.+.|++
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d---------l--ei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID---------L--EINKAGELLKNGDI 435 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh---------h--hhhHHHHHHhccCH
Confidence 1111111110 1111111111111 1100 00000000000000000000 0 00123457899999
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHH-HHh-cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 007808 276 FEVLDAFKRMLTEGRVFPNDATIVTVLSA-CAR-LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVF 353 (589)
Q Consensus 276 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (589)
+.|+++++-..+.. -+.-...-+.+... +.+ ..++..|.++-+.+...+ ..+......-...-...|++++|.+.|
T Consensus 436 ~~aieilkv~~~kd-nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 436 EGAIEILKVFEKKD-NKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHHhcc-chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHH
Confidence 99999999887765 22222222333222 222 346667777666655433 233333333333445678999999999
Q ss_pred hhCCCCCcchHHHHH---HHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC
Q 007808 354 NSMDTKDLITWNTII---SGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP 430 (589)
Q Consensus 354 ~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 430 (589)
++....|...-..|. -.+-..|+.++|++.|-++..- +..+......+...|....+..+|++++.+... -++.
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~ 590 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN 590 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC
Confidence 999877665444443 3466789999999999887763 344667777888999999999999999987742 4556
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
|+.+.+.|.+.|-+.|+-.+|.+..-+- . ++.+..+..-|..-|....-+++|+.+|+++--+.|+....-..++.++
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 7889999999999999999999875544 4 4457777777777788888899999999999999998665666677888
Q ss_pred hhcCChHHHHHHHHHhh
Q 007808 509 GDLGRWKDVARIKVAMR 525 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~ 525 (589)
.|.|++++|..+|+...
T Consensus 671 rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HhcccHHHHHHHHHHHH
Confidence 89999999999999985
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-14 Score=132.55 Aligned_cols=215 Identities=15% Similarity=0.104 Sum_probs=175.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHH
Q 007808 305 CARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGAL 381 (589)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 381 (589)
+.-.|+.-.+.+-++..+..... +...|-.+..+|....+.++-...|+... +.|+.+|..-.+.+.-.+++++|.
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 34567888888888888887633 33447778888999999999999998776 347788988888888899999999
Q ss_pred HHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C
Q 007808 382 SLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P 459 (589)
Q Consensus 382 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 459 (589)
.=|++.+. +.| +...|..+.-+..+.+.++++...|++..++ ++..+..|+....++...+++++|.+.|+.. .
T Consensus 415 aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 415 ADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999998 566 5667777777778899999999999999874 4555778999999999999999999999987 3
Q ss_pred CCCC---------HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 460 IEAD---------AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 460 ~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.|. +..-..++. +.-.+++..|+++++++++++|....+|..|+.+..+.|+.++|+++|++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4443 222222222 2234899999999999999999999999999999999999999999999874
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-14 Score=128.96 Aligned_cols=369 Identities=13% Similarity=0.077 Sum_probs=277.7
Q ss_pred CCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCch-hHHHHHHHHHhC
Q 007808 194 ERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVF-SWNGLIGGYANN 272 (589)
Q Consensus 194 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~ 272 (589)
+.|...+......+.+.|....|+..|......-+..|.+.+....-..+.+.+..+.......+.. .--.+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3466666667777788899999999998877666667777666665566666666655555543222 222345567777
Q ss_pred CChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCChHH-H
Q 007808 273 GLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ--GNVCVGNALIDMYAKCGIIEN-A 349 (589)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~-A 349 (589)
.+.++++.-.......| .+-+...-+....+.....++++|+.+|+.+.+...- .+..+|+.++-.--.+.++.- |
T Consensus 241 ~q~~e~~~k~e~l~~~g-f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVG-FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHhcc-CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 78889998888888887 5555555555556677888999999999999987421 256677666533322222221 2
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007808 350 VDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSI 428 (589)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 428 (589)
..+ -.+.+-.+.|..++.+-|.-.++.++|...|++..+. .|. ...|+.+..-|....+...|.+-++.+++ -.
T Consensus 320 ~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~ 394 (559)
T KOG1155|consen 320 QNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN 394 (559)
T ss_pred HHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC
Confidence 222 2233446677788888899999999999999999984 554 45677788889999999999999999974 23
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 429 VPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
+-|-..|-.|+.+|.-.+.+.=|+-+|+++ ..+| |...|.+|..+|.+.++.++|++.|++++..+..+..++..|++
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 446789999999999999999999999998 4556 78999999999999999999999999999988888899999999
Q ss_pred HHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhc
Q 007808 507 IYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFST 585 (589)
Q Consensus 507 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 585 (589)
+|.+.++.++|...+++-.+.- ...| ...|+.-.+..-|++=+.++++.++|..+...+.++
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~--~~eg---------------~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVS--ELEG---------------EIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH--Hhhc---------------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 9999999999999988774211 0000 356666777777999999999998888877766543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-14 Score=140.30 Aligned_cols=242 Identities=12% Similarity=0.038 Sum_probs=129.9
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhHH--HHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHH
Q 007808 306 ARLGALDFSKWVHVYAEYNGYQGNVCVG--NALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGA 380 (589)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 380 (589)
.+.|+++.+...+.++.+.. |+.... ......+...|+++.|...++++.+ .++.....+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 45555555555555554432 222111 1224455555555555555555442 2344555555666666666666
Q ss_pred HHHHHHHHHCCCCCCH-------hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 007808 381 LSLFHEMKNAGEMPDG-------ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVD 453 (589)
Q Consensus 381 ~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 453 (589)
.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6666666654433221 12222233333334445555555555432 23455556666666666777777666
Q ss_pred HHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccC
Q 007808 454 FVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 454 ~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 532 (589)
.+++. ..+|+.... ++.+....++.+++.+.+++..+..|+|+..+..++.++.+.|+|++|.+.++++.
T Consensus 285 ~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al------- 355 (398)
T PRK10747 285 IILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL------- 355 (398)
T ss_pred HHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------
Confidence 66655 333444222 22333344666666666666666667666666667777777777777777666664
Q ss_pred CccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcch
Q 007808 533 PGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTF 578 (589)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (589)
+.+|+++. +..|+.++.+.|+.++|.+.
T Consensus 356 -----------------~~~P~~~~-~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 356 -----------------KQRPDAYD-YAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred -----------------hcCCCHHH-HHHHHHHHHHcCCHHHHHHH
Confidence 45566544 33566666666666655443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-14 Score=141.08 Aligned_cols=284 Identities=11% Similarity=0.016 Sum_probs=200.2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007808 270 ANNGLFFEVLDAFKRMLTEGRVFPND-ATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIEN 348 (589)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (589)
...|+++.|.+.+.+..+.. |+. ..+.....+....|+.+.+..++..+.+....+...+.......+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 45688888888887776643 443 33344456677788888888888887765422222344445777888899999
Q ss_pred HHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHH-HHHHH---HhccCcHHHHHHHHHH
Q 007808 349 AVDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFI-GILCA---CTHMGLVEEGLSYFQS 421 (589)
Q Consensus 349 A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~---~~~~g~~~~A~~~~~~ 421 (589)
|...++.+.+ | ++..+..+...+.+.|++++|.+.+..+.+.++.+. ..+. .-..+ ....+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9888888763 3 566788888999999999999999999998764432 2221 11111 1222333333334444
Q ss_pred hHHhc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH---HHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 422 MAMDY--SIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIW---ANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 422 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
+.... ..+.++..+..++..+...|+.++|.+.+++. ...||.... ..........++.+.+.+.+++.++..|
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 43321 11237788888999999999999999999988 445655421 2222333456888999999999999999
Q ss_pred CCC--cchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 496 KNP--ANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 496 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
+++ ....++++++.+.|+|++|.+.+++.. +++.+|++.. +.+|+.++.++|+.+
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~----------------------a~~~~p~~~~-~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVA----------------------ACKEQLDAND-LAMAADAFDQAGDKA 387 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhH----------------------HhhcCCCHHH-HHHHHHHHHHcCCHH
Confidence 999 889999999999999999999999532 1256787766 559999999999998
Q ss_pred CCcchHh
Q 007808 574 HPLTFIV 580 (589)
Q Consensus 574 ~~~~~~~ 580 (589)
+|.++..
T Consensus 388 ~A~~~~~ 394 (409)
T TIGR00540 388 EAAAMRQ 394 (409)
T ss_pred HHHHHHH
Confidence 8866554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-16 Score=150.09 Aligned_cols=256 Identities=16% Similarity=0.137 Sum_probs=112.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007808 264 GLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDAT-IVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342 (589)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (589)
.+...+.+.|++++|++++++..... .+|+... +..+...+...++.+.|...++.+...+. .+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-cccccccccccc-cc
Confidence 34666778888888888886554432 2344444 33444556677888888888888877653 356667777777 68
Q ss_pred cCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhccCcHHHHHHHH
Q 007808 343 CGIIENAVDVFNSMD--TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAG-EMPDGITFIGILCACTHMGLVEEGLSYF 419 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 419 (589)
.+++++|.+++.... .+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 889999998887764 3466778888889999999999999999987632 3456677888888999999999999999
Q ss_pred HHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 420 QSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+++++. .| |......++..+...|+.+++.++++... .+.|+..+..+..++...|++++|...++++.+.+|+
T Consensus 170 ~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 170 RKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 999864 35 47788899999999999999888877662 2345566788899999999999999999999999999
Q ss_pred CCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 497 NPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 497 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|+.....+++++...|+.++|.++++++.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988763
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-12 Score=117.84 Aligned_cols=408 Identities=11% Similarity=0.107 Sum_probs=242.2
Q ss_pred ccCCchHHHHHHHHHHhCCCCCccchHHHHHHHH--ccCCh-------------------------hHHHHHhhcCCCCC
Q 007808 12 LETTKHLHQIQTQVVTSGLEKSDYITPRIITACA--QLKQM-------------------------TYARKMFDKITDQN 64 (589)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--~~~~~-------------------------~~A~~~~~~~~~~~ 64 (589)
-+...+..-+++.|.+.|++.+..+-..|.+..+ ...++ +-|.-+|+..+ .+
T Consensus 128 ~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P-KT 206 (625)
T KOG4422|consen 128 SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP-KT 206 (625)
T ss_pred hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC-CC
Confidence 3445556789999999999998877766655432 11122 12222333222 46
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHH
Q 007808 65 VVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIEL 144 (589)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 144 (589)
..+|..+|.++++-...+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHH
Confidence 67899999999999999999999999988877899999999998764332 37889999999999999999999999
Q ss_pred HHcCCChHHHH----HHHccCC----CCCeehHHHHHHHHHhCCCHHHH-HHHHHhCCCCChhHHHHHHHHHhcCCChHH
Q 007808 145 YSTGKAIEAAY----KVFGEMD----ERNVVVWTSMINGYISCGDIVSA-RCLFELAPERDVILWNTIVSGYIDVRNMIE 215 (589)
Q Consensus 145 ~~~~g~~~~A~----~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 215 (589)
.++.|+++.|. +++.+|+ +|...+|..+|..+++.++..+. ..++..+. +.+ .|
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~-----------N~l--tG---- 345 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ-----------NSL--TG---- 345 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH-----------Hhh--cc----
Confidence 99999887654 4455554 37777888888888877776542 22222111 000 00
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---CchhHHHHHHHHHhCCChHHHHHHHHH
Q 007808 216 ARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE--------R---NVFSWNGLIGGYANNGLFFEVLDAFKR 284 (589)
Q Consensus 216 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 284 (589)
+-|+-....|...|..-+..|.+..+.+-|.++-.-... + ...-|..+....|+....+.-+.+|+.
T Consensus 346 --K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~ 423 (625)
T KOG4422|consen 346 --KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYED 423 (625)
T ss_pred --CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000001223333344444444444444443332221 1 112345566777788888888888888
Q ss_pred HHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchH
Q 007808 285 MLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITW 364 (589)
Q Consensus 285 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 364 (589)
|+..- +.|+..+...++++....+.++-..+++..++..|...+.....-++..+++.. ..|+....
T Consensus 424 lVP~~-y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r 490 (625)
T KOG4422|consen 424 LVPSA-YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPER 490 (625)
T ss_pred hccce-ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHH
Confidence 88877 778888888888888888888888888888887764433332222222222211 01211111
Q ss_pred HHHHHHHHhC-CChHH-HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH---HH
Q 007808 365 NTIISGLAMH-GRGAG-ALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGC---MV 439 (589)
Q Consensus 365 ~~l~~~~~~~-~~~~~-A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---l~ 439 (589)
..+-....+. -++.+ ....-.+|.+..++ ....+.++..+.+.|+.++|.+++..+.++..-.|.....|+ ++
T Consensus 491 ~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~ 568 (625)
T KOG4422|consen 491 EQLQVAFAKCAADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM 568 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence 1111111110 01111 12222344443333 334555555566777777777777776554343444444443 33
Q ss_pred HHHHhcCCHHHHHHHHhhC
Q 007808 440 DLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~ 458 (589)
+.-.+.+....|+.+++-|
T Consensus 569 d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 569 DSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 4445556666666666655
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-13 Score=136.04 Aligned_cols=348 Identities=14% Similarity=0.149 Sum_probs=201.1
Q ss_pred hCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccC---CCChhhHHHHHHHHHhcCCHHHHHHHH
Q 007808 178 SCGDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMP---KKDVISWNTMLSGYANNGDVEECKRLF 251 (589)
Q Consensus 178 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 251 (589)
..|++++|.+++.++.+. ....|..|..+|-..|+.+++...+-.+. ..|...|..+.....+.|++++|.-.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 336666666665555433 33455555555555555555554443221 234455555555555555555555555
Q ss_pred hhCCCCCch---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 007808 252 EEMPERNVF---SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQG 328 (589)
Q Consensus 252 ~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 328 (589)
.+..+.++. ..---...|-+.|+...|.+.|.++.... .+.|..-+..
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d---------------------------- 281 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIED---------------------------- 281 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHH----------------------------
Confidence 555542222 22222344555555555555555555543 1111111111
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC------------
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMDT-----KDLITWNTIISGLAMHGRGAGALSLFHEMKNAG------------ 391 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~------------ 391 (589)
.....++.+...++.+.|.+.++.... -+...++.++..|.+...++.|......+....
T Consensus 282 ---~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 282 ---LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 111123333444444455554444332 133345555555555555665555555554411
Q ss_pred ---------------CCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHHhcCCHHHHHHH
Q 007808 392 ---------------EMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSI--VPQIEHYGCMVDLLARAGRLAEAVDF 454 (589)
Q Consensus 392 ---------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 454 (589)
+.++... .-+.-++.+....+....+......+ .+ .-+...|.-+.++|...|++.+|+.+
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 2222222 11222333444444433333333332 42 33467888899999999999999999
Q ss_pred HhhCCCC-C--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCcc
Q 007808 455 VKRMPIE-A--DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKK 531 (589)
Q Consensus 455 ~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 531 (589)
+..+... + +...|..+..+|...|.+++|.+.|++++...|++..+...|+.++.+.|+.++|.+.++.+. .|
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~----~~ 512 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII----NP 512 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc----CC
Confidence 9998322 2 456888899999999999999999999999999999999999999999999999999999884 23
Q ss_pred CCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCC
Q 007808 532 LPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 574 (589)
++- ... + ..-+.+.-+..+...+|...|+.++
T Consensus 513 D~~--------~~e--~-~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 513 DGR--------NAE--A-CAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred Ccc--------chh--h-ccccHHHHHHHHHHHHHHHhhhHHH
Confidence 311 000 0 1224455666788888888888866
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-12 Score=122.67 Aligned_cols=280 Identities=14% Similarity=0.035 Sum_probs=229.1
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 007808 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALI 337 (589)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 337 (589)
++........-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-..+++. .|....+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 44455556667888899999999999999875 455555666666888888888777777777765 467788999999
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHH
Q 007808 338 DMYAKCGIIENAVDVFNSMDTKDL---ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEE 414 (589)
Q Consensus 338 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 414 (589)
-.|...|+..+|++.|.+...-|. ..|-.+...|.-.|..++|+..+....+. ++-...-+..+..-|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 999999999999999998775433 58999999999999999999999888773 22223334456667888999999
Q ss_pred HHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCC----CHHHHHHHHHHHhcCCCHHHHH
Q 007808 415 GLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP-----IEA----DAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p----~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
|.++|.++. ++-| |+..++-+.-.....+.+.+|..+|+... +.+ -..+++.|..+|.+.+.+++|+
T Consensus 399 Ae~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999886 5555 46677777777778899999999988762 111 3456888999999999999999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHH
Q 007808 485 LALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEAN 564 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 564 (589)
..+++++.+.|.++.++..++-+|...|+++.|+..+.+.. -++|++..+-..|+.
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL------------------------~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL------------------------ALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH------------------------hcCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999998885 688999999999998
Q ss_pred HHHH
Q 007808 565 MIKL 568 (589)
Q Consensus 565 ~~~~ 568 (589)
+...
T Consensus 532 aie~ 535 (611)
T KOG1173|consen 532 AIED 535 (611)
T ss_pred HHHh
Confidence 8765
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-13 Score=124.49 Aligned_cols=319 Identities=13% Similarity=0.099 Sum_probs=231.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHH--HHHHH
Q 007808 226 KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATI--VTVLS 303 (589)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~--~~l~~ 303 (589)
.|...+-...-.+.+.|..+.|++.|......-+..|.+-+....-..+ ++........+ +.|...+ -.+..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~----~e~~~~l~~~l--~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD----IEILSILVVGL--PSDMHWMKKFFLKK 235 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch----HHHHHHHHhcC--cccchHHHHHHHHH
Confidence 4444444455566778888889888888776444444433322111112 22222222222 2221111 12334
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc------chHHHHHHHHHhCCCh
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDL------ITWNTIISGLAMHGRG 377 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~ 377 (589)
++......+++.+-.......|++.+...-+....+.-...+++.|+.+|+++.+.|+ .+|...+- .++.+.
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhH
Confidence 5666667888888888899999988887777777778888999999999999986544 45555443 333222
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHh
Q 007808 378 AGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (589)
.+..+.+-.-.=-+--+.|...+.+.|+-.++.++|..+|++.++ +.|. ...|..+++-|...++...|++-++
T Consensus 314 --kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 --KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred --HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 222222211110122345777888889999999999999999974 4455 5678889999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCc
Q 007808 457 RM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPG 534 (589)
Q Consensus 457 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 534 (589)
++ .+.| |...|-.+.++|...+...-|+-+|+++.++.|+|+..|..||++|.+.++.++|++.|++..
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai--------- 459 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI--------- 459 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH---------
Confidence 98 5555 889999999999999999999999999999999999999999999999999999999999986
Q ss_pred cceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhh
Q 007808 535 CSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
....-+..++..||.+|.++++..+|..+..+
T Consensus 460 ---------------~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 460 ---------------LLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred ---------------hccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 23334679999999999999999888766543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-12 Score=116.32 Aligned_cols=472 Identities=13% Similarity=0.102 Sum_probs=334.1
Q ss_pred HccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCChHHHH
Q 007808 45 AQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCF-TFPIVLKSCVKINALREGE 120 (589)
Q Consensus 45 ~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~ 120 (589)
...+++..|+.+|+.... .++..|-.-+..=.+++.+..|..++++.... -|-.. .|-..+..--..|+...|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345678888999988765 56677888888888999999999999988754 33332 3444444445678999999
Q ss_pred HHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCC--CCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC---
Q 007808 121 ELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMD--ERNVVVWTSMINGYISCGDIVSARCLFELAPER--- 195 (589)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 195 (589)
++|+...+ ..|+...|.+.|+.=.+...++.|..++++.. .|++.+|.-...---+.|....+..+|+...+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 99998877 57899999999999999999999999999875 588888988888888999999998888876643
Q ss_pred ---ChhHHHHHHHHHhcCCChHHHHHHhcccCC--CC---hhhHHHHHHHHHhcCCHHHHHHHH--------hhCCC---
Q 007808 196 ---DVILWNTIVSGYIDVRNMIEARKLFDQMPK--KD---VISWNTMLSGYANNGDVEECKRLF--------EEMPE--- 256 (589)
Q Consensus 196 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~l~~~~~~~~~~~~A~~~~--------~~~~~--- 256 (589)
+...+.+....-.++..++.|.-+|+-..+ |. ...|..+...=-+-|+.....+.. +.+..
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 223444555444566778888887776654 32 344555554444556654444332 22222
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH-------HHHHHHHHH---HhcCChhHHHHHHHHHHHcCC
Q 007808 257 RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA-------TIVTVLSAC---ARLGALDFSKWVHVYAEYNGY 326 (589)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~ 326 (589)
-|..+|-..++.--..|+.+...++|+.++.. ++|-.. .|.-+=-++ ....+.+.+.++++..++. +
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 26678888888888889999999999999886 455321 122111111 3467888999999988883 4
Q ss_pred CCChhHHHHHHHH----HHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHH
Q 007808 327 QGNVCVGNALIDM----YAKCGIIENAVDVFNSMDT--KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFI 400 (589)
Q Consensus 327 ~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 400 (589)
|....+|..+--. ..++.++..|.+++..... |...+|...|..-.+.++++.+..++++.++-+ +-|..+|.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ 475 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWS 475 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHH
Confidence 5455555544333 3567899999999988773 566788888888889999999999999999853 33677888
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHh----
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCR---- 475 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~---- 475 (589)
.....-...|+.+.|..+|+-++....+......|.+.|+.=...|.+++|..+++++ ...+-...|-++..--.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccc
Confidence 8888778889999999999988765333334567888888888999999999999988 33445556655553222
Q ss_pred -cCC-----------CHHHHHHHHHHHHc----cCCCCC--cchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 476 -VYK-----------NVELAELALERLTE----LEPKNP--ANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 476 -~~g-----------~~~~A~~~~~~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+.+ ....|..+|+++.. ..|... ..+..+-++-...|...+...+-++|
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 334 56788888988876 233211 12223333344566666666665555
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-12 Score=115.15 Aligned_cols=452 Identities=12% Similarity=0.064 Sum_probs=336.9
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 64 NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+...|-.-...=..++++..|..+|++....+ .-+...|..-+..-.+...+..|..+++..+..=+..|..-|. .+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHH
Confidence 44556666666667889999999999998755 3456667777777788999999999999998865444444443 333
Q ss_pred HHHcCCChHHHHHHHccCCC--CCeehHHHHHHHHHhCCCHHHHHHHHHhCC--CCChhHHHHHHHHHhcCCChHHHHHH
Q 007808 144 LYSTGKAIEAAYKVFGEMDE--RNVVVWTSMINGYISCGDIVSARCLFELAP--ERDVILWNTIVSGYIDVRNMIEARKL 219 (589)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 219 (589)
+=-..|++..|.++|++..+ |+..+|.+.|+.-.+...++.|..+|++.. .|++.+|.-....-.+.|....+..+
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44567999999999999875 999999999999999999999999999864 68999999888888999999999999
Q ss_pred hcccCC------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC---chhHHHHHHHHHhCCChHHHHH--------
Q 007808 220 FDQMPK------KDVISWNTMLSGYANNGDVEECKRLFEEMPE--RN---VFSWNGLIGGYANNGLFFEVLD-------- 280 (589)
Q Consensus 220 ~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~~l~~~~~~~g~~~~A~~-------- 280 (589)
|+...+ .+...+.++...=.++..++.|.-+|+-..+ |. ...|..+...=-+-|+.....+
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 998875 2344566666666667888999988887665 22 3344444443344455443333
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh--hHHHHHHHH--------HHhcCChHHHH
Q 007808 281 AFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNV--CVGNALIDM--------YAKCGIIENAV 350 (589)
Q Consensus 281 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~g~~~~A~ 350 (589)
-|+.++..+ +.|..++-..++.-...|+.+...++|++++.. +||-. ..+...|-. -....+++.+.
T Consensus 310 qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 310 QYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred HHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 256666665 567788888888888899999999999999875 34421 112222211 13467888999
Q ss_pred HHHhhCCC---CCcchHHH----HHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007808 351 DVFNSMDT---KDLITWNT----IISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 351 ~~~~~~~~---~~~~~~~~----l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 423 (589)
++|+...+ ....||.. ...-..++.+...|.+++-..+ |..|-..+|...|..-.+.++++....++++.+
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99986653 34444444 3444557889999999998776 578999999999999999999999999999997
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
. --+-+..+|......=...|+.+.|..+|+-+...|. ...|.+.+..-...|.+++|..+|++.++..+. ..
T Consensus 465 e--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h-~k 541 (677)
T KOG1915|consen 465 E--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH-VK 541 (677)
T ss_pred h--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc-ch
Confidence 4 2233577888888888899999999999998854553 344556666667899999999999999998887 44
Q ss_pred chHHHHHHHh-----hcC-----------ChHHHHHHHHHhh
Q 007808 500 NFVMLSNIYG-----DLG-----------RWKDVARIKVAMR 525 (589)
Q Consensus 500 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~ 525 (589)
+|.+.+..-. +.| ....|..+|+++.
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 7777766544 344 4556777777663
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=127.56 Aligned_cols=213 Identities=12% Similarity=0.048 Sum_probs=168.7
Q ss_pred HHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHH
Q 007808 339 MYAKCGIIENAVDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEE 414 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 414 (589)
.+.-.|+.-.|..-|+...+ | ++..|--+...|....+.++-...|.+..+. .| |+.+|..-.+.+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHH
Confidence 34456777888888877663 2 3344777888899999999999999988874 44 66778888888888889999
Q ss_pred HHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 415 GLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
|..-|++.+ .+.|+ ...|-.+.-+..+.+++++++..|++. .++.-+..|+.....+..++++++|.+.|++++
T Consensus 413 A~aDF~Kai---~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAI---SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHh---hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999886 44554 556666777777888999999999988 355556778888888999999999999999999
Q ss_pred ccCCC------CCcchHHHHHHHhh-cCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHH
Q 007808 492 ELEPK------NPANFVMLSNIYGD-LGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEAN 564 (589)
Q Consensus 492 ~~~p~------~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 564 (589)
++.|. ++..+..-+-+..+ .+++..|+.++.+.. +++|.-..++..||.
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~------------------------e~Dpkce~A~~tlaq 545 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAI------------------------ELDPKCEQAYETLAQ 545 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHH------------------------ccCchHHHHHHHHHH
Confidence 99998 66666655555443 578888999988875 899999999999999
Q ss_pred HHHHcccCCCCcchHh
Q 007808 565 MIKLLPQNNHPLTFIV 580 (589)
Q Consensus 565 ~~~~~~~~~~~~~~~~ 580 (589)
+....|+.++||++-.
T Consensus 546 ~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 546 FELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 9999999999988643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-11 Score=112.19 Aligned_cols=409 Identities=14% Similarity=0.116 Sum_probs=243.8
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHH--cCCChHHH-HHHHccCCC---CCeehHHHHHHH
Q 007808 102 TFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYS--TGKAIEAA-YKVFGEMDE---RNVVVWTSMING 175 (589)
Q Consensus 102 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A-~~~~~~~~~---~~~~~~~~l~~~ 175 (589)
+=+.|++. ...|.+..+.-+|+.|...|.+.+..+-..|.+.-+ ...+..-| .+.|-.|.. ....+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW------ 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW------ 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc------
Confidence 44555553 355777778888888888887777776666654333 22222211 223333332 222233
Q ss_pred HHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCC----CChhhHHHHHHHHHhcCCHHHHHHHH
Q 007808 176 YISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISWNTMLSGYANNGDVEECKRLF 251 (589)
Q Consensus 176 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~ 251 (589)
+.|...+ ++-+.......++..+|.++++-...+.|.+++++... .+..+||.+|.+-.-... .+++
T Consensus 191 --K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv 261 (625)
T KOG4422|consen 191 --KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLV 261 (625)
T ss_pred --ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHH
Confidence 2333333 44444455666777777777777777777777776653 456667766654433322 3444
Q ss_pred hhCC----CCCchhHHHHHHHHHhCCChHH----HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 007808 252 EEMP----ERNVFSWNGLIGGYANNGLFFE----VLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFS-KWVHVYAE 322 (589)
Q Consensus 252 ~~~~----~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 322 (589)
.+|. .||..|+|+++.+..+.|+++. |++++.+|.+.| +.|...+|..++..+++.++..+. ..++..+.
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG-VePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG-VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC-CCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 4443 4788888888888777776654 456677778888 888888888888887777776443 33333332
Q ss_pred H----cCC----CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----------CcchHHHHHHHHHhCCChHHHHHH
Q 007808 323 Y----NGY----QGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK-----------DLITWNTIISGLAMHGRGAGALSL 383 (589)
Q Consensus 323 ~----~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~ 383 (589)
. ..+ +.+...|..-+..|....+.+-|..+-.-+... ...-|..+....++....+.-+.+
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 112 223445556666666777777777665544321 112355566667777777888888
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CH--------HH----
Q 007808 384 FHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG-RL--------AE---- 450 (589)
Q Consensus 384 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~---- 450 (589)
|+.|.-+-+-|+..+...++++....|.++-.-++|..+. .+|..-+.....-+...+++.+ +. ..
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAK 499 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 8888877777888888888888877788777777777663 3343333333333333333333 11 00
Q ss_pred -HHHHHhh-------C-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---CCCCc--chHHHHHHHhhcCChHH
Q 007808 451 -AVDFVKR-------M-PIEADAVIWANLLGSCRVYKNVELAELALERLTELE---PKNPA--NFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 451 -A~~~~~~-------~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~ 516 (589)
|..+++. + ..+-.....+.....+.+.|..++|.+++....+.. |..|. +...+.+.-.+.+..-.
T Consensus 500 ~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 500 CAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 1111111 1 123345556667777788899999998888886532 44222 23345555667778888
Q ss_pred HHHHHHHhhhCC
Q 007808 517 VARIKVAMRDTG 528 (589)
Q Consensus 517 A~~~~~~~~~~~ 528 (589)
|+.+++-|...+
T Consensus 580 A~~~lQ~a~~~n 591 (625)
T KOG4422|consen 580 AIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHcC
Confidence 888888875443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-13 Score=129.81 Aligned_cols=274 Identities=10% Similarity=0.051 Sum_probs=148.0
Q ss_pred cCCHHHHHHHHhhCCCC--CchhHHHH-HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHH--HHHHHHHhcCChhHHH
Q 007808 241 NGDVEECKRLFEEMPER--NVFSWNGL-IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIV--TVLSACARLGALDFSK 315 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~~--~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~ 315 (589)
.|+++.|++.+....+. ++..+..+ .....+.|+++.|.+.+.++.+.. |+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 35555555555544331 11222112 222345555555555555555432 3332221 2234455555555555
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc-----------chHHHHHHHHHhCCChHHHHHHH
Q 007808 316 WVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDL-----------ITWNTIISGLAMHGRGAGALSLF 384 (589)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~ 384 (589)
..++.+.+.. |.+......+...|.+.|++++|.+++..+.+... .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 5555555544 34455555555566666666666655555543211 12222233233333444555555
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC
Q 007808 385 HEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD 463 (589)
Q Consensus 385 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 463 (589)
+.+-+. .+.+......+...+...|+.++|.+++++..+ ..|+.... ++.+....++.+++++..++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 554332 233555666677777777777777777766653 23444322 223333457777777777665 33443
Q ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 464 -AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 464 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
......+...|.+.|++++|.+.|+++++..|+ ...+..++.++.+.|+.++|.+++++-.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344556667777777777777777777777776 4456677777777777777777777654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-13 Score=132.80 Aligned_cols=275 Identities=14% Similarity=0.037 Sum_probs=219.3
Q ss_pred cCCHHHHHHHHhhCCC--CCc-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHhcCChhHHHH
Q 007808 241 NGDVEECKRLFEEMPE--RNV-FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFP-NDATIVTVLSACARLGALDFSKW 316 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 316 (589)
.-+..+|...|....+ +|. .....+..+|...+++++|.++|+.+.+..+... +..+|.+.+-.+-+ +-+..
T Consensus 332 ~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3456889999988654 333 4455678899999999999999999988653222 45677777665432 22233
Q ss_pred HHHH-HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007808 317 VHVY-AEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGE 392 (589)
Q Consensus 317 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 392 (589)
.+.+ +.+. .+..+.+|.++..+|.-+++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+..+. +
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 3322 2332 3667899999999999999999999999998854 447888888889999999999999998876 4
Q ss_pred CCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 007808 393 MPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWA 468 (589)
Q Consensus 393 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 468 (589)
.|. -..|..+...|.+.++++.|+-.|++++ .+.|. ......++..+.+.|+.++|+++++++ ..+| |+..--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 553 3467778889999999999999999997 55564 667777889999999999999999998 3444 555544
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.....+...+++++|.+.++++.++-|++...+..++.+|.+.|+.+.|+.-+.-+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 556777889999999999999999999999999999999999999999999887775
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-12 Score=123.88 Aligned_cols=280 Identities=12% Similarity=0.020 Sum_probs=145.5
Q ss_pred cCCChHHHHHHhcccCC--CChh-hHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc--hhHHHHHHHHHhCCChHHHHHH
Q 007808 209 DVRNMIEARKLFDQMPK--KDVI-SWNTMLSGYANNGDVEECKRLFEEMPE--RNV--FSWNGLIGGYANNGLFFEVLDA 281 (589)
Q Consensus 209 ~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~A~~~ 281 (589)
..|+++.|.+.+.+..+ |+.. .+-.....+.+.|+.+.|.+.+.+..+ |+. .........+...|++++|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 45666666666655543 3322 223334556666777777777766543 332 2223345666667777777777
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHH---H----hcCChHHHHHHHh
Q 007808 282 FKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMY---A----KCGIIENAVDVFN 354 (589)
Q Consensus 282 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~~ 354 (589)
++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-..++ . .....+...+.++
T Consensus 176 l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 176 VDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777754 2244556666667777777777777777777665432221111111111 1 1122233334444
Q ss_pred hCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhH--H-HHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007808 355 SMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGIT--F-IGILCACTHMGLVEEGLSYFQSMAMDYSI 428 (589)
Q Consensus 355 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 428 (589)
...+ .++..+..++..+...|++++|.+++++..+. .||... + ..........++.+.+.+.+++..+....
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 4432 25556666666666667777777776666663 333321 0 11111122335555555555555443222
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhh--C-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 429 VPQIEHYGCMVDLLARAGRLAEAVDFVKR--M-PIEADAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
.|+.....++...+.+.|++++|.+.|++ . ...|+...+..+...+.+.|+.++|.++|++.+.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22113444555555566666666666652 2 3455555555555555566666666666655543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.7e-12 Score=117.66 Aligned_cols=259 Identities=11% Similarity=0.026 Sum_probs=196.1
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHH
Q 007808 293 PNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIIS 369 (589)
Q Consensus 293 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 369 (589)
-+.........-|...+++.+...+.+...+.. |++...+..-|.++...|+..+-..+=.++.+ ....+|-++..
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 344555556666778888999999988888775 56666666666688888887766666555553 36678999888
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007808 370 GLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRL 448 (589)
Q Consensus 370 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 448 (589)
-|...|++.+|...|.+... +.|. ...|..+..+|.-.|..++|...+..+.+-. +-...-+-.+.--|.+.+++
T Consensus 321 YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhccH
Confidence 88888999999999988765 4443 3568888888888899999998887775421 11111223355568888999
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHc----cCCC---CCcchHHHHHHHhhcCChHHHHH
Q 007808 449 AEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTE----LEPK---NPANFVMLSNIYGDLGRWKDVAR 519 (589)
Q Consensus 449 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~ 519 (589)
+-|.++|.++ .+.| |+...+-+.-.....+.+.+|...|+.++. ..+. -..++.+||.+|.+.+++++|+.
T Consensus 397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999887 4555 566677777666778889999999988884 2222 23458889999999999999999
Q ss_pred HHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHh
Q 007808 520 IKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
.+++.. .+.|.+++++..+|.+|.-+|+.+.||++.-
T Consensus 477 ~~q~aL------------------------~l~~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 477 YYQKAL------------------------LLSPKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HHHHHH------------------------HcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 998875 7999999999999999999999999988754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-11 Score=110.94 Aligned_cols=275 Identities=13% Similarity=0.071 Sum_probs=204.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007808 272 NGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVD 351 (589)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (589)
.|+|.+|.++..+..+.+ - -....|..-..+.-+.|+.+.+-.++.++.+....++....-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~-e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-E-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-c-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 588888888888877766 2 22334555566777788888888888888776545666677777778888888888887
Q ss_pred HHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh-------HHHHHHHHHhccCcHHHHHHHHHH
Q 007808 352 VFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI-------TFIGILCACTHMGLVEEGLSYFQS 421 (589)
Q Consensus 352 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~ 421 (589)
-..++. ..++........+|.+.|++.+...++..|.+.|+-.+.. +|..+++-+...+..+.-...|+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 776554 4577788888888999999999999999988887655543 567777777776777776777777
Q ss_pred hHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc
Q 007808 422 MAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPAN 500 (589)
Q Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 500 (589)
..++ .+-++..-.+++.-+.++|+.++|.++.++. +..-|.. -.....+.+-++.+.=++..++.++..|++|..
T Consensus 255 ~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L 330 (400)
T COG3071 255 QPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLL 330 (400)
T ss_pred ccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhH
Confidence 7653 3445555667788888999999998888776 3233333 223345667888888888888888888888889
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 501 FVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 501 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
+..|+..|.+.+.|.+|.+.++... +.. ...+.+..+|.++.+.|+..+|.+
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl------------------------~~~-~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAAL------------------------KLR-PSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH------------------------hcC-CChhhHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999999888764 333 335667888888888888876544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-10 Score=105.94 Aligned_cols=275 Identities=13% Similarity=0.031 Sum_probs=179.9
Q ss_pred CCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CchhHHHHHHHHHhCCChHHHHHHH
Q 007808 210 VRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMPER----NVFSWNGLIGGYANNGLFFEVLDAF 282 (589)
Q Consensus 210 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 282 (589)
.|++.+|+++..+-.+ .....|..-..+.-..|+.+.+-.++.+..++ +....-+........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555554433 11222333334455566666666666555542 2233444455566666666666666
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHhh
Q 007808 283 KRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN-------VCVGNALIDMYAKCGIIENAVDVFNS 355 (589)
Q Consensus 283 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (589)
.++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+ ..+++.+++-....+..+.-...++.
T Consensus 177 ~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666654 23344555556666666666666666666666654333 23455556555555556665667777
Q ss_pred CC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 007808 356 MD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI 432 (589)
Q Consensus 356 ~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 432 (589)
.+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|.. ...-.+.+.++...-++..++..+..+..|
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p-- 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP-- 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence 66 346777777888888899999999998888887777762 222345667777777777777766544444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
..+.+|...|.+.+.|.+|.+.|+.. ...|+..+|+.+..++.+.|+.++|.+..++++.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66778888888999999998888876 6788888888888888889999988888888875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-09 Score=100.89 Aligned_cols=280 Identities=13% Similarity=0.147 Sum_probs=179.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchh-------HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC--------
Q 007808 229 ISWNTMLSGYANNGDVEECKRLFEEMPERNVFS-------WNGLIGGYANNGLFFEVLDAFKRMLTEGRVFP-------- 293 (589)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-------- 293 (589)
..|..+...|-..|+++.|..+|++..+-+..+ |..-...=.+..+++.|+++++....-. -.|
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP-~~~~~~~yd~~ 466 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP-TNPELEYYDNS 466 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC-CchhhhhhcCC
Confidence 467888888899999999999999988744333 3333344445677888888887765432 111
Q ss_pred ---------cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC----CC
Q 007808 294 ---------NDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT----KD 360 (589)
Q Consensus 294 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 360 (589)
+...|...+..-...|-++....+|+.+++..+... .+.....-.+-...-++++.++|++-.. |+
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 112344444444556778888888888888775433 2322333344555668888888887653 34
Q ss_pred c-chHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHhHHHHH--HHHHhccCcHHHHHHHHHHhHHhcCCCCC--h
Q 007808 361 L-ITWNTIISGLAM---HGRGAGALSLFHEMKNAGEMPDGITFIGI--LCACTHMGLVEEGLSYFQSMAMDYSIVPQ--I 432 (589)
Q Consensus 361 ~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 432 (589)
+ ..|+..+.-+.+ ....+.|..+|++..+ |++|...-+..| ...-.+.|-...|.++++++.. ++++. .
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l 622 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRL 622 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHH
Confidence 3 367776665554 3468899999999998 677754433223 2333455888899999999865 45444 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHH---HHHhcCCCHHHHHHHHHHHHcc-CCC-CCcchHHHHH
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLL---GSCRVYKNVELAELALERLTEL-EPK-NPANFVMLSN 506 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~ 506 (589)
..||..|.--...=-......+|+++ ..-|+...-...+ ..-.+.|..+.|..+|...-++ +|. +...|...=.
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHH
Confidence 56776665333322233334555554 2345544332222 3446889999999999999884 453 5668888888
Q ss_pred HHhhcCC
Q 007808 507 IYGDLGR 513 (589)
Q Consensus 507 ~~~~~g~ 513 (589)
.-.+.|+
T Consensus 703 FEvrHGn 709 (835)
T KOG2047|consen 703 FEVRHGN 709 (835)
T ss_pred HHHhcCC
Confidence 8888998
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-12 Score=116.09 Aligned_cols=194 Identities=12% Similarity=0.097 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLL 442 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (589)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.... .+.+...+..+...+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Confidence 34445555566666666666666655531 223445555555666666666666666665432 122344555556666
Q ss_pred HhcCCHHHHHHHHhhCCC----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH
Q 007808 443 ARAGRLAEAVDFVKRMPI----EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
...|++++|.+.++++.. ......+..+...+...|++++|...++++++..|+++..+..++.++...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666665521 1123344445556666666666666666666666666666666666666666666666
Q ss_pred HHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 519 RIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
..+++.. +..|+++..+..++.++...|+.+.+..+...+.
T Consensus 190 ~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQ------------------------QTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHH------------------------HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666654 3345566666666666666666666655554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-09 Score=103.32 Aligned_cols=188 Identities=14% Similarity=0.116 Sum_probs=105.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHH---HHHhCCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHh---c
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDTKDLITWNTIIS---GLAMHGRGAGALSLFHEMKNAGEMPDGI-TFIGILCACT---H 408 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~---~ 408 (589)
.++.....|-++....+|+++..-.+.|=..+++ .+-.+.-++++.+++++-+..=..|+.. .|+..+.-+. .
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 3343444455555555555554322222111111 1223444566666665544432234332 3444443332 3
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChH--HHHHHHHHHHhcCCHHHHHHHHhhCC--CCCC--HHHHHHHHHHHhcCCCHHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVPQIE--HYGCMVDLLARAGRLAEAVDFVKRMP--IEAD--AVIWANLLGSCRVYKNVEL 482 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~--~~~~~~l~~~~~~~g~~~~ 482 (589)
...++.|..+|++++. +.+|... .|......=.+.|....|+.+++++. +++. ...|+..+.--...=-+..
T Consensus 563 g~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3568899999999976 5566532 23333333446788888999999883 3442 3567776633222212334
Q ss_pred HHHHHHHHHccCCCCCc--chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 483 AELALERLTELEPKNPA--NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
-.++|+++++.-|++-. .....+++-.+.|..+.|..++..-.
T Consensus 641 TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 641 TREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 56789999998887433 33345777888999999999887653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-10 Score=100.76 Aligned_cols=249 Identities=12% Similarity=0.042 Sum_probs=184.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-C--hhHHHHHHHHHHhcCChH
Q 007808 271 NNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQG-N--VCVGNALIDMYAKCGIIE 347 (589)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~~ 347 (589)
-+++.++|+++|-+|.+.. +-+..+..++.+.|.+.|..+.|++++..+.+..--+ + ......|..-|...|-++
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3567888888888888754 3344566677788888888888888888877643111 1 223445677788889999
Q ss_pred HHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHhccCcHHHHHHHHH
Q 007808 348 NAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG----ITFIGILCACTHMGLVEEGLSYFQ 420 (589)
Q Consensus 348 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~ 420 (589)
.|+.+|..+.+. -......|+..|-...+|++|+++-+++.+.+-.+.. ..|.-|...+....+.+.|..+++
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999988763 3356677888899999999999999988886655543 246667777777788999999998
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 421 SMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD--AVIWANLLGSCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
+..+. -+..+..--.+.+.+...|+++.|++.++.+ ..+|+ +.+...|..+|.+.|+.++....+.++.+..+.
T Consensus 205 kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g- 281 (389)
T COG2956 205 KALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG- 281 (389)
T ss_pred HHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-
Confidence 88753 1223444455778889999999999999888 44565 355677778999999999999999999998887
Q ss_pred CcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 498 PANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+..-..+.+.-....-.+.|..++.+-
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 667777777766666666666665544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.8e-10 Score=109.95 Aligned_cols=385 Identities=14% Similarity=0.037 Sum_probs=241.2
Q ss_pred CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccCC----CC-hhhHHHHH
Q 007808 164 RNVVVWTSMINGYISCGDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMPK----KD-VISWNTML 235 (589)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~l~ 235 (589)
.|...|..+.-++...|+++.+.+.|++...- ....|+.+...+...|.-..|..+++.... |+ ...+-...
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 35556666777777788888888888776543 456677777778888888888888776654 22 22333333
Q ss_pred HHHH-hcCCHHHHHHHHhhCCC--------CCchhHHHHHHHHHhC-----------CChHHHHHHHHHHHHcCCCCCcH
Q 007808 236 SGYA-NNGDVEECKRLFEEMPE--------RNVFSWNGLIGGYANN-----------GLFFEVLDAFKRMLTEGRVFPND 295 (589)
Q Consensus 236 ~~~~-~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~p~~ 295 (589)
..|. +.+.+++++.+-.++.. -....|..+.-+|... -...++++.+++..+.++-.|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 3333 24455555544444332 1233444444444321 12456788888888776444544
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHH
Q 007808 296 ATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLA 372 (589)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 372 (589)
..|..+ -|+-.++++.|.....+..+.+-..+...+..|.-.+...+++.+|+.+.+..... |...-..-+..-.
T Consensus 481 if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 481 IFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 444333 45566788888888888888866777888888888888888999988888765421 1111111122222
Q ss_pred hCCChHHHHHHHHHHHHC---------------------C--C---CC--CHhHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007808 373 MHGRGAGALSLFHEMKNA---------------------G--E---MP--DGITFIGILCACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 373 ~~~~~~~A~~~~~~m~~~---------------------~--~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 424 (589)
.-++.++++.....+..- | . .| ...++..+..-.. .+.+.+..-.. + .
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~-L-p 634 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSELK-L-P 634 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccccc-c-C
Confidence 245555555544443321 0 0 01 0112221111111 00000000000 1 1
Q ss_pred hcCCCCC--------hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 007808 425 DYSIVPQ--------IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELE 494 (589)
Q Consensus 425 ~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (589)
.....|+ ...|......+.+.+..++|.-.+.+. .+.| ....|......+...|+.++|.+.|..++.++
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 1112222 234556677888999999998887777 4444 45566666677888999999999999999999
Q ss_pred CCCCcchHHHHHHHhhcCChHHHHH--HHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 495 PKNPANFVMLSNIYGDLGRWKDVAR--IKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 495 p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
|+++.....++.++.+.|+-.-|.. ++..+. +++|.+++++..||.+..+.|+.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dal------------------------r~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDAL------------------------RLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH------------------------hhCCCCHHHHHHHHHHHHHccch
Confidence 9999999999999999998777777 777775 89999999999999999999999
Q ss_pred CCCcch
Q 007808 573 NHPLTF 578 (589)
Q Consensus 573 ~~~~~~ 578 (589)
.+|...
T Consensus 771 ~~Aaec 776 (799)
T KOG4162|consen 771 KQAAEC 776 (799)
T ss_pred HHHHHH
Confidence 876543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-10 Score=101.82 Aligned_cols=204 Identities=12% Similarity=0.060 Sum_probs=94.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhHHHHHHHHH
Q 007808 265 LIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN----VCVGNALIDMY 340 (589)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~ 340 (589)
|..-|...|-++.|.++|..+.+.+ ..-......++..|-...+|++|..+-.++.+.+-.+. ...|.-|...+
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 3344445555555555555554433 11223344444444455555555554444444432221 12333444444
Q ss_pred HhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHH
Q 007808 341 AKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 417 (589)
....+++.|..++.+..+. .+..--.+...+...|+++.|++.|+...+.+..--..+...|..+|.+.|+.++...
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4445555555555544421 2233333445555566666666666665554322223344555556666666666666
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHH
Q 007808 418 YFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDF-VKRMPIEADAVIWANLLGS 473 (589)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~ 473 (589)
.+..+.+. .++...-..+.+.-....-.+.|... .+.+..+|+...+..++..
T Consensus 271 fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 271 FLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 55555432 23333333333333333333333332 3334445665555555543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-11 Score=110.76 Aligned_cols=195 Identities=14% Similarity=0.082 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC 406 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 406 (589)
...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566677778888888888888876652 245677778888889999999999999988753 33556777788888
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
...|++++|.+.++++............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998753222334556777888999999999999999887 3344 4567777888899999999999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 485 LALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..++++++..|.++..+..++.++...|+.++|..+.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999988888888899999999999999999988775
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.4e-09 Score=94.34 Aligned_cols=287 Identities=12% Similarity=-0.001 Sum_probs=172.7
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHH
Q 007808 257 RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDAT-IVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNA 335 (589)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 335 (589)
.|+.....+..++...|+.++|+..|++..-.+ |+..+ .....-.+.+.|+.+....+...+.... ..+...|..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 356666677777777777777777777765532 44322 1111222345566666555555544332 112222333
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCc
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGL 411 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~ 411 (589)
-+.......+++.|+.+-++..+. ++..+-.-...+...|++++|.-.|+..+. +.| +...|..|+.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhch
Confidence 333344556677777766665533 333444444566677777777777777665 344 55677777777777777
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHH-HHH-HhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHH
Q 007808 412 VEEGLSYFQSMAMDYSIVPQIEHYGCMV-DLL-ARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELAL 487 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 487 (589)
+.+|.-.-+...+ -+..+..+...+. ..+ ..-..-++|.+++++. .+.|+. ...+.+...|...|..+.++.++
T Consensus 384 ~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7777766555544 2233444444332 222 2223346777777766 556653 33444556667777777777777
Q ss_pred HHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 488 ERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 488 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
++.+...|+ ...+..|++++...+.+++|...|.... +++|++..++.-|..+..
T Consensus 462 e~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL------------------------r~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 462 EKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKAL------------------------RQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHH------------------------hcCccchHHHHHHHHHHh
Confidence 777777776 5577777777777777777777777664 778888888888888776
Q ss_pred HcccCCCCcc
Q 007808 568 LLPQNNHPLT 577 (589)
Q Consensus 568 ~~~~~~~~~~ 577 (589)
++. .++|.+
T Consensus 517 ~~~-~~DATd 525 (564)
T KOG1174|consen 517 SDD-ESDATD 525 (564)
T ss_pred ccC-CCCccc
Confidence 555 344443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-10 Score=98.46 Aligned_cols=89 Identities=10% Similarity=0.012 Sum_probs=37.6
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCCh
Q 007808 72 FNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAI 151 (589)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 151 (589)
+.-+....++..|+.+++.-...+-.-...+-..+..++...|++++|...|..+.... .++...+-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 33444445555555555443322211111222223333345555555555555544432 33333333343333344555
Q ss_pred HHHHHHHccC
Q 007808 152 EAAYKVFGEM 161 (589)
Q Consensus 152 ~~A~~~~~~~ 161 (589)
.+|..+-.+.
T Consensus 108 ~eA~~~~~ka 117 (557)
T KOG3785|consen 108 IEAKSIAEKA 117 (557)
T ss_pred HHHHHHHhhC
Confidence 5555554443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-10 Score=113.73 Aligned_cols=243 Identities=12% Similarity=0.063 Sum_probs=122.6
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCe
Q 007808 87 LFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNV 166 (589)
Q Consensus 87 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 166 (589)
++..+...|+.|+.+||..++..||..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 3444455555555555555555555555555555 5555555555555555555555555555554443 4455
Q ss_pred ehHHHHHHHHHhCCCHHH---HHHHHHhCC---------------------CC-ChhHHHHHHHHHhcCCChHHHHHHhc
Q 007808 167 VVWTSMINGYISCGDIVS---ARCLFELAP---------------------ER-DVILWNTIVSGYIDVRNMIEARKLFD 221 (589)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~---a~~~~~~~~---------------------~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 221 (589)
.+|..|..+|...||+.. ..+.++.+. .| ....-..++....-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555432 111111110 00 00011122233334455555555555
Q ss_pred ccCC--CChhhHHHHHHHHHh-cCCHHHHHHHHhhCCC-CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHH
Q 007808 222 QMPK--KDVISWNTMLSGYAN-NGDVEECKRLFEEMPE-RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDAT 297 (589)
Q Consensus 222 ~~~~--~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~ 297 (589)
.+.. .+.. ...+++-+.. ...+++-..+.+...+ +++.++..++.+-...|+.+.|..++.+|.+.| ++.+..-
T Consensus 164 ~~Pvsa~~~p-~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g-fpir~Hy 241 (1088)
T KOG4318|consen 164 KVPVSAWNAP-FQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG-FPIRAHY 241 (1088)
T ss_pred hCCcccccch-HHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC-CCccccc
Confidence 4432 1110 0001222221 2223333333333333 666667777776667777777777777777777 6655555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007808 298 IVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342 (589)
Q Consensus 298 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (589)
|..++-+ .++...++.++.-|...|+.|+..|+...+..+..
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 5555443 56666666666667777777766666554444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-11 Score=100.79 Aligned_cols=195 Identities=15% Similarity=0.117 Sum_probs=162.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVD 440 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~ 440 (589)
+...|.-.|.+.|++..|..-+++.++. .| +..++..+...|.+.|+.+.|.+.|+++.. +.| +-.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3455778899999999999999999995 56 456888899999999999999999999974 345 4678899999
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 441 LLARAGRLAEAVDFVKRMPIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
.+|..|++++|...|+++...|. ..+|..+..+..+.|+.+.|.+.|++.++++|+.+.....++....+.|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999999844443 57788888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 517 VARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
|..++++....+ |-.++-+-+.-.+...+|+...+-.+-.-|..-|
T Consensus 192 Ar~~~~~~~~~~------------------------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 192 ARLYLERYQQRG------------------------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHHhcc------------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999986333 3445555566667777777766666666666555
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.6e-09 Score=100.87 Aligned_cols=437 Identities=11% Similarity=0.096 Sum_probs=247.8
Q ss_pred HHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhH--HHHHHH--c
Q 007808 72 FNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTA--LIELYS--T 147 (589)
Q Consensus 72 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~--~ 147 (589)
+.-+...|++++|.....++...+ +.+...+..=+-++...+.+++|..+.+.- + -..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---G---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c---hhhhcchhhHHHHHHHHH
Confidence 344556677777777777777554 334445555566666777777776443321 1 0111111 234444 5
Q ss_pred CCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHH-hcCCChHHHHHHhcccCCC
Q 007808 148 GKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGY-IDVRNMIEARKLFDQMPKK 226 (589)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~ 226 (589)
.+..++|+..++-....+..+...-...+.+.|++++|+.+|+.+.+.+...+...+.+- ...+-.-.+. +.+.....
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v 170 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEV 170 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCC
Confidence 677788887777544445446666677777888888888888877655433332222211 1111111111 22222221
Q ss_pred ChhhH---HHHHHHHHhcCCHHHHHHHHhhCC--------CCCc----------hhHHHHHHHHHhCCChHHHHHHHHHH
Q 007808 227 DVISW---NTMLSGYANNGDVEECKRLFEEMP--------ERNV----------FSWNGLIGGYANNGLFFEVLDAFKRM 285 (589)
Q Consensus 227 ~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (589)
...+| ......+...|++.+|+++++... +.|. ..--.|.-++...|+..+|..+|...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 12233 334456667888888888888772 1111 11223455677889999999999999
Q ss_pred HHcCCCCCcHHHHHHHHH---HHHhcCChhH--HHHHHHHHH-----------HcCCCCChhHHHHHHHHHHhcCChHHH
Q 007808 286 LTEGRVFPNDATIVTVLS---ACARLGALDF--SKWVHVYAE-----------YNGYQGNVCVGNALIDMYAKCGIIENA 349 (589)
Q Consensus 286 ~~~~~~~p~~~~~~~l~~---~~~~~~~~~~--a~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (589)
++.. ++|........+ +.....++.. +...++... ...-......-+.++..| .+..+.+
T Consensus 251 i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~ 326 (652)
T KOG2376|consen 251 IKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQV 326 (652)
T ss_pred HHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHH
Confidence 8886 455533322222 2221111111 111111110 000000111112233333 3556677
Q ss_pred HHHHhhCCCCC-cchHHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHH------
Q 007808 350 VDVFNSMDTKD-LITWNTIISGLA--MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQ------ 420 (589)
Q Consensus 350 ~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~------ 420 (589)
.++........ ...+.+++.... +...+.++.+++....+....-+.......+......|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 77776666433 334444444332 223577888888887775222223455556667788999999999998
Q ss_pred --HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCCHHHHHHHH----HHHhcCCCHHHHHHHHHH
Q 007808 421 --SMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP-----IEADAVIWANLL----GSCRVYKNVELAELALER 489 (589)
Q Consensus 421 --~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~ 489 (589)
.+. +.+..|. +...+...|.+.++.+-|..++.+.. ..+.......++ ..-.+.|+.++|...+++
T Consensus 407 ~ss~~-~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 407 KSSIL-EAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhh-hhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 442 2244444 45557778888887766666666541 122333333333 333567999999999999
Q ss_pred HHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 490 LTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 490 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+++.+|++..+...++-+|++. +.+.|+.+-+.+
T Consensus 484 l~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 484 LVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999876 567777765544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=108.33 Aligned_cols=225 Identities=14% Similarity=0.100 Sum_probs=153.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007808 263 NGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342 (589)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (589)
+.+..+|.+.|-+.+|.+.|+..++.. |-+.||..+-++|.+..++..|..++.+-.+. +|.++.......+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 557788888888888888888888754 67777888888888888888888887776664 34555555555566666
Q ss_pred cCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHH
Q 007808 343 CGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYF 419 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 419 (589)
.++.++|.++|+...+. ++...-++...|.-.++++-|+..++++.+.|+ -+...|+.+.-+|.-.+++|-++..|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666655432 334444444555555666666666666666553 34455555555555555555555554
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 420 QSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEA--DAVIWANLLGSCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
++.... - ..| ....|..+.......||+..|.+.|+-++..+|++
T Consensus 382 ~RAlst-a--------------------------------t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 382 QRALST-A--------------------------------TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHhh-c--------------------------------cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 444221 0 112 23456666677778899999999999999999999
Q ss_pred CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 498 PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+++++|+.+-.+.|+.++|..++....
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999999999999999999999988875
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.3e-10 Score=108.37 Aligned_cols=389 Identities=16% Similarity=0.039 Sum_probs=246.5
Q ss_pred CCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC-----ChhHHH
Q 007808 130 GFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPER-----DVILWN 201 (589)
Q Consensus 130 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~ 201 (589)
.+..|..+|..|.-+..+.|+++.+-+.|++... .....|..+...|...|.-..|..+++....+ |...+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3556777888888888888888888888887764 34457888888888888888888888776543 233344
Q ss_pred HHHHHHh-cCCChHHHHHHhcccCC--------CChhhHHHHHHHHHhc-----------CCHHHHHHHHhhCCC---CC
Q 007808 202 TIVSGYI-DVRNMIEARKLFDQMPK--------KDVISWNTMLSGYANN-----------GDVEECKRLFEEMPE---RN 258 (589)
Q Consensus 202 ~l~~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~---~~ 258 (589)
.....|. +.+.+++++.+-.++.+ -....|..+.-+|... ....++.+.+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4444444 34566666555544432 2334444444444331 113455666666654 23
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID 338 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (589)
+.....+.--|+..++.+.|++..++..+-+ -.-+...|..+.-.+...+++..|+.+.+.....- +.|-.....-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333334445677788888888888888875 35567777777777888888888888877765431 111111111122
Q ss_pred HHHhcCChHHHHHHHhhCC------------------------------CC--CcchHHHHHHHHHhCCChHHHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMD------------------------------TK--DLITWNTIISGLAMHGRGAGALSLFHE 386 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~------------------------------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 386 (589)
.-...++.++|......+. ++ .+.++..+.......+ +.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-
Confidence 2222344444443322211 00 1122222222111111 00000000
Q ss_pred HHHCCCCCCH--------hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 387 MKNAGEMPDG--------ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 387 m~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
|....+.|.. ..|......+.+.+..++|...+.++.. -.+-....|......+...|.+++|.+.|...
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 1221222322 2345566678888999999988888753 22334566777778899999999999998887
Q ss_pred -CCCCC-HHHHHHHHHHHhcCCCHHHHHH--HHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 459 -PIEAD-AVIWANLLGSCRVYKNVELAEL--ALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 459 -~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++|+ +....++...+.+.|+..-|.. ++..+++++|.++++|+.++.++.+.|+.++|.+.|....
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 56775 5778888899999999888888 9999999999999999999999999999999999998875
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.3e-10 Score=114.12 Aligned_cols=244 Identities=14% Similarity=0.007 Sum_probs=176.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007808 273 GLFFEVLDAFKRMLTEGRVFPN-DATIVTVLSACA---------RLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342 (589)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (589)
+++++|+..|++.++.. |+ ...+..+..++. ..+++++|...++++.+.+ |.+...+..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~ld---P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS---PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 34678999999998854 54 344554544433 2244789999999998876 5677888888889999
Q ss_pred cCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCcHHHHHHH
Q 007808 343 CGIIENAVDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-ITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
.|++++|...|++..+ | +...+..+..++...|++++|+..+++..+. .|+. ..+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998763 3 4567888899999999999999999999984 5543 2333444456668999999999
Q ss_pred HHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 419 FQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVI-WANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 419 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
++++... ..| ++..+..+..+|...|++++|...++++ +..|+... .+.+...|...| ++|...++++++..-
T Consensus 429 ~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9988653 234 3555777888999999999999999987 44555444 444445666666 478888888776332
Q ss_pred CCCcchHHHHHHHhhcCChHHHHHHHHHhhhC
Q 007808 496 KNPANFVMLSNIYGDLGRWKDVARIKVAMRDT 527 (589)
Q Consensus 496 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 527 (589)
..+.....+..+|.-.|+-+.+..+ +++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222223377778888888887776 777544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-10 Score=118.46 Aligned_cols=208 Identities=11% Similarity=-0.022 Sum_probs=156.1
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh---------cCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCCh
Q 007808 310 ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK---------CGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRG 377 (589)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 377 (589)
+.++|...++++.+.. |.+...+..+..+|.. .+++++|...+++..+ .+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4578888999888765 4456666666665542 2447889998887764 2556788888888899999
Q ss_pred HHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 007808 378 AGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI-EHYGCMVDLLARAGRLAEAVDFV 455 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 455 (589)
++|+..|++..+. .| +...+..+...+...|++++|...++++.+ ..|+. ..+..++..+...|++++|+..+
T Consensus 355 ~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 355 IVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999885 45 456777788888999999999999998874 34542 23333445566788999999998
Q ss_pred hhCC--CCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 456 KRMP--IEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 456 ~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+++. ..|+ ...+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 8872 2354 4445666677888999999999999988888887778888888888888 47888777765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-10 Score=112.14 Aligned_cols=201 Identities=16% Similarity=0.172 Sum_probs=144.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC-----C-CCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc----CC-CCCh-
Q 007808 366 TIISGLAMHGRGAGALSLFHEMKNA-----G-EMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDY----SI-VPQI- 432 (589)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~m~~~-----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~- 432 (589)
.+...|...+++++|..+|+++..- | ..| -..+++.|..+|.+.|++++|..+++.+.+-. +. .|.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3555666667777777777766541 1 112 23456777777888888888877777654311 11 1222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC------CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--------
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRMP------IEAD----AVIWANLLGSCRVYKNVELAELALERLTELE-------- 494 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------- 494 (589)
..++.++..+...+++++|..++++.. ..++ ..+++.+...|...|++++|++++++++.+.
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 345567778888999999888887651 1222 3678888999999999999999999998843
Q ss_pred CCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCC
Q 007808 495 PKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 495 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 574 (589)
+.....+..++..|.+.+++++|.++|.+...-. +..| .-+|+--.++-+|+-+|..+|+.++
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~--~~~g---------------~~~~~~~~~~~nL~~~Y~~~g~~e~ 468 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM--KLCG---------------PDHPDVTYTYLNLAALYRAQGNYEA 468 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH--HHhC---------------CCCCchHHHHHHHHHHHHHcccHHH
Confidence 2224467889999999999999999998885322 1111 4578888899999999999999999
Q ss_pred CcchHhhhh
Q 007808 575 PLTFIVVIF 583 (589)
Q Consensus 575 ~~~~~~~~~ 583 (589)
|+++...+.
T Consensus 469 a~~~~~~~~ 477 (508)
T KOG1840|consen 469 AEELEEKVL 477 (508)
T ss_pred HHHHHHHHH
Confidence 999988775
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.3e-09 Score=98.43 Aligned_cols=430 Identities=10% Similarity=0.009 Sum_probs=254.9
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHH--hCCCHHH
Q 007808 107 LKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYI--SCGDIVS 184 (589)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~ 184 (589)
++.+...+++++|.+...+++..+ +.+...+..=+-+..+.+.+++|+.+.+.-........-.+=.+|| +.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 455667889999999999999877 4455566666667888999999997766544211111111344444 7899999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHH-HhcCCHHHHHHHHhhCCCCCchhHH
Q 007808 185 ARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGY-ANNGDVEECKRLFEEMPERNVFSWN 263 (589)
Q Consensus 185 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~ 263 (589)
|+..++...+.|..+...-...+.+.|++++|.++|+.+.+.+...+...+.+- ...+-...+. +.+........+|.
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sye 176 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSYE 176 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchHH
Confidence 999999665556667777888899999999999999999775444443333221 1111122222 34444442233333
Q ss_pred ---HHHHHHHhCCChHHHHHHHHHHHHcC-------CCC-CcH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 007808 264 ---GLIGGYANNGLFFEVLDAFKRMLTEG-------RVF-PND-----ATIVTVLSACARLGALDFSKWVHVYAEYNGYQ 327 (589)
Q Consensus 264 ---~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~-p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 327 (589)
.....+...|++.+|+++++...+.+ ... -+. ..-..+.-++-..|+..+|..++...++....
T Consensus 177 l~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 177 LLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC
Confidence 34556788999999999999883321 011 011 11223444567889999999999999988743
Q ss_pred CCh---hHHHHHHHHHHhcCChH-HHHHHHhhCCCCC--------------cchHH-HHHHHHHhCCChHHHHHHHHHHH
Q 007808 328 GNV---CVGNALIDMYAKCGIIE-NAVDVFNSMDTKD--------------LITWN-TIISGLAMHGRGAGALSLFHEMK 388 (589)
Q Consensus 328 ~~~---~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~--------------~~~~~-~l~~~~~~~~~~~~A~~~~~~m~ 388 (589)
..+ ...|.|+..-....-++ .++..++...... ....| .++..| .+..+.+.++.....
T Consensus 257 D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 257 DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLP 334 (652)
T ss_pred CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCC
Confidence 221 12222322211111111 2222332222111 11111 222222 223333333332221
Q ss_pred HCCCCCCHhHHHHHHHHH--hccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHh--------h
Q 007808 389 NAGEMPDGITFIGILCAC--THMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVK--------R 457 (589)
Q Consensus 389 ~~~~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~--------~ 457 (589)
+..|.. .+..++..+ .+...+..+.+++..... +.+-+ ..+...++......|+++.|++++. .
T Consensus 335 --~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 335 --GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred --ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 123332 333444433 223357778888777754 22222 4455667788899999999999998 3
Q ss_pred CC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc----cCC---CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCC
Q 007808 458 MP-IEADAVIWANLLGSCRVYKNVELAELALERLTE----LEP---KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 458 ~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 529 (589)
.+ +.-.+.+...+...+.+.++.+.|..++.+++. ..+ .....+..++..-.+.|+-++|..+++++.
T Consensus 410 ~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~---- 485 (652)
T KOG2376|consen 410 ILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV---- 485 (652)
T ss_pred hhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH----
Confidence 32 233344555667777888887778888877765 122 223344555666778899999999999996
Q ss_pred ccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 530 KKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
+.+|++...+.-|=-.|..+
T Consensus 486 --------------------k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 486 --------------------KFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred --------------------HhCCchHHHHHHHHHHHHhc
Confidence 45666666666666555444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-10 Score=110.67 Aligned_cols=239 Identities=18% Similarity=0.188 Sum_probs=155.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHc-----CCCCCcHHHHH-HHHHHHHhcCChhHHHHHHHHHHHcCC-------C
Q 007808 261 SWNGLIGGYANNGLFFEVLDAFKRMLTE-----GRVFPNDATIV-TVLSACARLGALDFSKWVHVYAEYNGY-------Q 327 (589)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~ 327 (589)
+...+...|...|++++|..+++..++. |...|...+.. .+...|...+++++|..+|+.+...-. +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444777788888888888888777664 11134433322 255556666666666666665543210 1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHh-HHHHHHHH
Q 007808 328 GNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGE-MPDGI-TFIGILCA 405 (589)
Q Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~-~~~~l~~~ 405 (589)
--..+++.|..+|.+.|++++|...++ .|++++++. .|. .|... .++.++..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e------------------------~Al~I~~~~--~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCE------------------------RALEIYEKL--LGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHH------------------------HHHHHHHHh--hccChHHHHHHHHHHHHH
Confidence 112234444444555555555544432 244444441 122 22222 35667777
Q ss_pred HhccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC---------CCCC-HHHHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYS--IVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP---------IEAD-AVIWAN 469 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~ 469 (589)
|...+++++|..+++...+... ..++ ..+++.|...|...|++++|.++++++. ..+. ...++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 8888999999988887755332 2222 4678899999999999999999998871 1222 455677
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHc----cCCCC---CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTE----LEPKN---PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+...|.+.+++++|.++|.+... ..|++ ..+|.+|+.+|.+.|++++|+++.+.+.
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 88889999999999999988876 34544 4578899999999999999999988885
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-08 Score=92.36 Aligned_cols=266 Identities=10% Similarity=-0.050 Sum_probs=189.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchh---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007808 226 KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFS---WNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVL 302 (589)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 302 (589)
.|+.....+...+...|+.++|+..|++...-|+.+ .....-.+.+.|++++...+...+.... .-....|..-+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhh
Confidence 455566666677777777777777777665433322 2222334456777777777776665532 22333333334
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--C-CCcchHHHHHHHHHhCCChHH
Q 007808 303 SACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD--T-KDLITWNTIISGLAMHGRGAG 379 (589)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~ 379 (589)
.......+++.|..+-++.++.+ +.+...+-.-...+...|++++|.--|+... . -+...|..|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 44455667777777777777654 3455555555667778888999888888665 3 367889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHH-HHHh-ccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHh
Q 007808 380 ALSLFHEMKNAGEMPDGITFIGIL-CACT-HMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 380 A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (589)
|...-+..... ++.+..+...+. ..|. ...--++|.+++++.+ .+.|+ ....+.+...+...|+.++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 98887776653 344666665553 3333 3344678888888776 55677 4566778889999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 457 RM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 457 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
+. ...||....+.|...+...+.+++|.+.|..+++++|++.
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 87 5789999999999999999999999999999999999855
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-08 Score=100.26 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 478 KNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 478 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
.=.++|.++++.+.+..|++..+|..--++|.|.|++--|++.+++
T Consensus 471 dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 471 DPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3468899999999999999999999999999999999999988765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.3e-10 Score=108.72 Aligned_cols=261 Identities=14% Similarity=0.094 Sum_probs=178.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHH
Q 007808 306 ARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 382 (589)
.+.|++.+|.-.|+..++.+ |.+...|..|.......++-..|+..+.+..+- |......|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 44555555555555555554 445556666666666666666666666555432 33445555556666666667777
Q ss_pred HHHHHHHCCCCCCHhHHHHHH-----------HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 007808 383 LFHEMKNAGEMPDGITFIGIL-----------CACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEA 451 (589)
Q Consensus 383 ~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 451 (589)
.|+.-+... |. |..+. ..+.....+....++|-++....+..+|+.++..|.-.|--.|.+++|
T Consensus 375 ~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 777665432 11 00000 122223345556667777767667678888999999999999999999
Q ss_pred HHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCC
Q 007808 452 VDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 452 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 529 (589)
++.|+.+ .++| |...||.|...++...+.++|+..|.+++++.|.-..+.++|+..|...|.|++|.+.+=++....-
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9999988 5677 6788999999999999999999999999999999999999999999999999999998766642211
Q ss_pred ccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC-----CCcchHhhhhhcc
Q 007808 530 KKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN-----HPLTFIVVIFSTF 586 (589)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~ 586 (589)
+..- +. ..-.+ +..++..|..++..+++.+ ..-.-++.|.+.|
T Consensus 530 ks~~-----------~~--~~~~~-se~iw~tLR~als~~~~~D~l~~a~~~~nl~~l~~~f 577 (579)
T KOG1125|consen 530 KSRN-----------HN--KAPMA-SENIWQTLRLALSAMNRSDLLQEAAPSRNLSALKAEF 577 (579)
T ss_pred cccc-----------cc--cCCcc-hHHHHHHHHHHHHHcCCchHHHHhccccCHHHHHHHh
Confidence 1000 00 00111 4679999999998898886 2344566666666
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-10 Score=106.89 Aligned_cols=185 Identities=16% Similarity=0.116 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHh
Q 007808 332 VGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACT 407 (589)
Q Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~ 407 (589)
.+..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|...|++..+ +.| +..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 344445555555666666555555442 2345566666666666666666666666665 344 3445555666666
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAEL 485 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 485 (589)
..|++++|.+.+++..+. .|+..........+...+++++|.+.+++. . .+|+...+ .+... ..|+...+ +
T Consensus 144 ~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~~~--~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIVEF--YLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHHHH--HccCCCHH-H
Confidence 666666666666666532 233221111122233455666666666543 1 22222111 11111 23333222 1
Q ss_pred HHHHHH-------ccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 486 ALERLT-------ELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 486 ~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++.+. ++.|+.+.+|..++.++.+.|++++|+..|++..
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 222222 3444555667777777777777777777776664
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.3e-11 Score=103.79 Aligned_cols=219 Identities=13% Similarity=0.118 Sum_probs=118.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhccCc
Q 007808 335 ALIDMYAKCGIIENAVDVFNSMD--TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITF-IGILCACTHMGL 411 (589)
Q Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~ 411 (589)
.+..+|.+.|-+.+|.+.|+.-. .|-+.||..|-.+|.+..+++.|+.++.+-.+. .|-.+|| ....+.+...++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHh
Confidence 44555555555555555555433 234445555555555555555555555555442 3333333 223344445555
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 007808 412 VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM---PIEADAVIWANLLGSCRVYKNVELAELALE 488 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 488 (589)
.++|.++|+...+. .+.+++...++...|.-.++.+-|+.+++++ + --++..|+.+.-+|.-.++++-++-.|+
T Consensus 306 ~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 55555555555431 1223333344444455555555555555543 2 1234445555555555555555555555
Q ss_pred HHHccC--CC-CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHH
Q 007808 489 RLTELE--PK-NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANM 565 (589)
Q Consensus 489 ~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 565 (589)
+++... |+ -..+|++|+.+....|++.-|.+.++- ++..+|++++++++|+-+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl------------------------aL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL------------------------ALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH------------------------HhccCcchHHHHHhHHHH
Confidence 555421 21 123455555555555555555555443 457899999999999999
Q ss_pred HHHcccCCCCcchHhhh
Q 007808 566 IKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 566 ~~~~~~~~~~~~~~~~~ 582 (589)
..+.|+...|-.+++.-
T Consensus 439 ~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAA 455 (478)
T ss_pred HhhcCchHHHHHHHHHh
Confidence 99999998887766543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.4e-09 Score=92.88 Aligned_cols=298 Identities=11% Similarity=0.091 Sum_probs=168.7
Q ss_pred HHHHHHhcCCChHHHHHHhcccCCCChhhHHHHH---HHHHhcCCHHHHHHHHhhCCC--CCchhH-HHHHHHHHhCCCh
Q 007808 202 TIVSGYIDVRNMIEARKLFDQMPKKDVISWNTML---SGYANNGDVEECKRLFEEMPE--RNVFSW-NGLIGGYANNGLF 275 (589)
Q Consensus 202 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~g~~ 275 (589)
.+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+.++.+ ||...- -.-...+.++|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 3444555555566666555555554444444433 355556666666555555554 332211 1122345667777
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 007808 276 FEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNS 355 (589)
Q Consensus 276 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (589)
++|..-|+..++.. |+..+- ..+..+.-..++- ......+..+...|+...|+.....
T Consensus 123 e~A~~DF~~vl~~~---~s~~~~---~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE---PSNGLV---LEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred HHHHHHHHHHHhcC---CCcchh---HHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 77777777776654 322110 0111110000000 0011122233445555566555555
Q ss_pred CCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh
Q 007808 356 MDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI 432 (589)
Q Consensus 356 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 432 (589)
+.+ -|...|..-..+|...|++..|+.-++...+.. ..+..++.-+-..+...|+.+.++..+++.+ .+.||.
T Consensus 181 llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdH 256 (504)
T KOG0624|consen 181 LLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDH 256 (504)
T ss_pred HHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcch
Confidence 442 245555555666666666666666655555432 2233344444455556666666666655554 344542
Q ss_pred H----HHHHH---------HHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 007808 433 E----HYGCM---------VDLLARAGRLAEAVDFVKRM-PIEAD-----AVIWANLLGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 433 ~----~~~~l---------~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
. .|..| +......++|.++++..++. ...|. ...+..+..++...|++.+|++...+++++
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 1 12111 12344567777777776665 44554 233445557788999999999999999999
Q ss_pred CCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 494 EPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 494 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+|+|..++..-+.+|.--..|++|+.-|++..
T Consensus 337 d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 337 DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-09 Score=99.66 Aligned_cols=234 Identities=10% Similarity=-0.080 Sum_probs=160.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 007808 272 NGLFFEVLDAFKRMLTEGRVFPN--DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENA 349 (589)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (589)
.+..+.++.-+.+++...+..|+ ...|......+...|+.+.|...|..+.+.. |.+...++.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34567777777777765423333 2456666777888888888888888888765 55678888899999999999999
Q ss_pred HHHHhhCCC--C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc
Q 007808 350 VDVFNSMDT--K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDY 426 (589)
Q Consensus 350 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 426 (589)
...|++..+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+++...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999988763 3 4567888888899999999999999999884 55443222222234456789999999976643
Q ss_pred CCCCChHHHHHHHHHHHhcCCHH--HHHHHHhhC-CC----CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-CC
Q 007808 427 SIVPQIEHYGCMVDLLARAGRLA--EAVDFVKRM-PI----EA-DAVIWANLLGSCRVYKNVELAELALERLTELEP-KN 497 (589)
Q Consensus 427 ~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 497 (589)
...|+...+ .+.. ...|+.. ++.+.+.+. .. .| ....|..+...+.+.|++++|+..|+++++.+| +.
T Consensus 194 ~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 223333222 2333 3344443 333333322 11 12 235788888999999999999999999999997 55
Q ss_pred CcchHHHHHHHhhcCC
Q 007808 498 PANFVMLSNIYGDLGR 513 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~ 513 (589)
++....++......++
T Consensus 271 ~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 271 VEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5566666665554443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.7e-09 Score=99.16 Aligned_cols=166 Identities=12% Similarity=0.111 Sum_probs=120.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhc
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIE-HYGCMVDLLARA 445 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 445 (589)
+..+|.+.++++.++..|++.......|+.. .+....+++....+... -+.|... -...-.+.+.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhc
Confidence 4456667788888888888876644444322 22233444444443331 3334431 112236678889
Q ss_pred CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 446 GRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 446 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
|++..|+..|.++ ...| |...|.....+|.+.|.+..|+.-.+..++++|+.+..|..-+.++.-..+|++|.+.|++
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 3445 6677888888889999999999999999999999888999999999999999999999888
Q ss_pred hhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHH
Q 007808 524 MRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKL 568 (589)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 568 (589)
.. +++|++.++.+.+.+.+..
T Consensus 452 al------------------------e~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 452 AL------------------------ELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HH------------------------hcCchhHHHHHHHHHHHHH
Confidence 75 7788888888888777764
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-08 Score=94.15 Aligned_cols=100 Identities=9% Similarity=0.079 Sum_probs=65.9
Q ss_pred CCChHHHH--HHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH
Q 007808 429 VPQIEHYG--CMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML 504 (589)
Q Consensus 429 ~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 504 (589)
+|.+..|. .++..|-+.|+++.|...++.+ ...|+. ..|..-...+.+.|++++|...++++.+++-.|...-..-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 34444443 4566677777788887777776 445543 3343444667777788888888888777776556555566
Q ss_pred HHHHhhcCChHHHHHHHHHhhhCC
Q 007808 505 SNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
+.-..++++.++|.++..+..+.|
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcc
Confidence 777777777777777777665544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-10 Score=95.20 Aligned_cols=162 Identities=7% Similarity=-0.074 Sum_probs=140.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCR 475 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 475 (589)
+...|.-.|...|++..|..-+++.++. -+.+..+|..+...|.+.|..+.|.+.|+++ ...| +....|.....++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 4666778899999999999999999752 2334678888999999999999999999987 5566 5677888999999
Q ss_pred cCCCHHHHHHHHHHHHc--cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC
Q 007808 476 VYKNVELAELALERLTE--LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL 553 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 553 (589)
.+|++++|...|++++. .-|..+.++.+++.|-.++|+.+.|.+.+++.. +++|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL------------------------~~dp 170 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL------------------------ELDP 170 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH------------------------HhCc
Confidence 99999999999999998 346667899999999999999999999999986 8999
Q ss_pred CchHHHHHHHHHHHHcccCCCCcchHhhhhhc
Q 007808 554 DRKSIVRAEANMIKLLPQNNHPLTFIVVIFST 585 (589)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 585 (589)
+++.....++....+-|+...|-.++..+..+
T Consensus 171 ~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 171 QFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 99999999999999999999998888877654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-10 Score=110.41 Aligned_cols=272 Identities=13% Similarity=0.100 Sum_probs=207.4
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC
Q 007808 280 DAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK 359 (589)
Q Consensus 280 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 359 (589)
.++-.+...| +.|+..||..++.-||..|+.+.|. +|..|.-...+.+...++.++.+....++.+.+. .|
T Consensus 11 nfla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 3566777888 9999999999999999999999999 9999999988999999999999999888877665 67
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
...+|..|..+|...||..- ++..++ ....+...+...|.-..-..++..+.-.-+..||..+ .+
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~i 146 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AI 146 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HH
Confidence 88899999999999999776 333332 2334555566667766667777665433345566543 45
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHh-cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH
Q 007808 440 DLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCR-VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
....-.|-++.+++++..++...-...+..+++-+. ....+++-..+.+...+ .|+ +.++..+..+-..+|+.+-|.
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhhHH
Confidence 566778889999999998863221111222343333 34455666666666666 665 889999999999999999999
Q ss_pred HHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhccc
Q 007808 519 RIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTFA 587 (589)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (589)
.++++|+++|++..+++.|..+-. .-+.+.+-..+..++ +.|..+.-.|..+.+.++|+
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---------~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---------INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---------CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhc
Confidence 999999999999999998876555 235567777777776 88999999999999999986
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-07 Score=91.47 Aligned_cols=438 Identities=14% Similarity=0.071 Sum_probs=227.0
Q ss_pred cCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHH
Q 007808 77 QNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYK 156 (589)
Q Consensus 77 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 156 (589)
..+++...++..+.+.+. .+-...|.....-.+...|+.++|.......++.. .-+.+.|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 344555555555555542 23334444444444455566666666666555543 2244455555555555566666666
Q ss_pred HHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccCC-----
Q 007808 157 VFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMPK----- 225 (589)
Q Consensus 157 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----- 225 (589)
.|..... .|...|..+.-.-.+.|+++.....-....+. ....|..++.+..-.|+...|..+++...+
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6665543 34445555554555555555544444333322 334566666666666666666666655542
Q ss_pred CChhhHHHHH------HHHHhcCCHHHHHHHHhhCCCC--C-chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH
Q 007808 226 KDVISWNTML------SGYANNGDVEECKRLFEEMPER--N-VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA 296 (589)
Q Consensus 226 ~~~~~~~~l~------~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 296 (589)
|+...+.... ....+.|..+.|.+.+..-... | ...-..-...+.+.++.++|..++..++... ||..
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn---Pdn~ 253 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN---PDNL 253 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC---chhH
Confidence 3333332221 3344566666666666555431 1 1222234456677777788888777777754 6665
Q ss_pred HHHHHHHHHH-hcCChhHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH-HHHhhCC-CCCcchHHHHHHHHH
Q 007808 297 TIVTVLSACA-RLGALDFSK-WVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAV-DVFNSMD-TKDLITWNTIISGLA 372 (589)
Q Consensus 297 ~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~-~~~~~~~~~l~~~~~ 372 (589)
-|...+..+. +..+.-++. .+|....+. ++... .-..+--......++.... +++.... +.-+.++..+...|-
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e-~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHE-CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Ccccc-cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 5555444333 233333333 444443332 11110 0011111111112222222 2222222 222334444444443
Q ss_pred hCCChHHHHHHHHHHHH----CC----------CCCCHh--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHH
Q 007808 373 MHGRGAGALSLFHEMKN----AG----------EMPDGI--TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHY 435 (589)
Q Consensus 373 ~~~~~~~A~~~~~~m~~----~~----------~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 435 (589)
.-...+-..++...+.. .| -+|... ++..++..+-..|+++.|..+++.++ +..|+ +..|
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly 408 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELY 408 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHH
Confidence 22221111111111111 00 134333 44556777888899999999998887 55566 4566
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC------CC-cchHHH--
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELALERLTELEPK------NP-ANFVML-- 504 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~-~~~~~l-- 504 (589)
..-.+.+...|.+++|..++++.. ..||...-..-..-..+.++.++|.++..+..+.+-+ +. -.|+.+
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~ 488 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLED 488 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhh
Confidence 666788888999999999998883 2344433223344456778889999988887775432 01 122222
Q ss_pred HHHHhhcCChHHHHHHHHHh
Q 007808 505 SNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~ 524 (589)
+..|.+.|++..|++-+..+
T Consensus 489 g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 489 GEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hHHHHHHHHHHHHHHHHhhH
Confidence 55688888888777755444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-08 Score=87.79 Aligned_cols=410 Identities=11% Similarity=0.039 Sum_probs=255.3
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHH
Q 007808 107 LKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIV 183 (589)
Q Consensus 107 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 183 (589)
+.-+....|+..|+.+++.-...+-+....+-.-+..++.+.|++++|...+..+.+ ++...+-.|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 344556678888888888776544333233444456778889999999999987765 45567777777788889999
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCchh
Q 007808 184 SARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE--RNVFS 261 (589)
Q Consensus 184 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 261 (589)
+|..+.....+. +-.-..+.....+.++-++-..+.+.+.+. ..---++.......-.+.+|+++|+++.. |+...
T Consensus 109 eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a 186 (557)
T KOG3785|consen 109 EAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA 186 (557)
T ss_pred HHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 999988876542 222233344445666666655555554432 12233444444555678899999999886 44445
Q ss_pred HHH-HHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHhcCChhHHHH--------------HHHHHHHcC
Q 007808 262 WNG-LIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA-TIVTVLSACARLGALDFSKW--------------VHVYAEYNG 325 (589)
Q Consensus 262 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~--------------~~~~~~~~~ 325 (589)
.|. +.-+|.+..-++-+.+++.-.+++- ||.. ..+.......+.-+-..|.. ..+.+.+.+
T Consensus 187 lNVy~ALCyyKlDYydvsqevl~vYL~q~---pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN 263 (557)
T KOG3785|consen 187 LNVYMALCYYKLDYYDVSQEVLKVYLRQF---PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN 263 (557)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHhC---CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence 554 3446677777788888887777753 5443 33332222222111111111 111222211
Q ss_pred C------C------C-----ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCC-------hHHHH
Q 007808 326 Y------Q------G-----NVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGR-------GAGAL 381 (589)
Q Consensus 326 ~------~------~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~ 381 (589)
. + | -+...-.|+-.|.+++++++|..+.+++....+.-|-.-.-.+...|+ ..-|.
T Consensus 264 LVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred eEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 1 0 0 112233456678899999999999999886666544433333333332 33456
Q ss_pred HHHHHHHHCCCCCCH-hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC-
Q 007808 382 SLFHEMKNAGEMPDG-ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP- 459 (589)
Q Consensus 382 ~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 459 (589)
+.|+-.-.++..-|. .--.++..++.-..++++.+-+++.+ +.+-...|...+| +..+++..|++.+|+++|-++.
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi-~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI-ESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC
Confidence 666655455544432 23456666677778899999998888 4434444555554 7899999999999999998884
Q ss_pred -CCCCHHHHHHHH-HHHhcCCCHHHHHHHHHHHHccCCCC-CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 460 -IEADAVIWANLL-GSCRVYKNVELAELALERLTELEPKN-PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 460 -~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.-.|..+|.+++ .+|.+.+.++.|..++-+.- .|.+ ...+..+++.+.+.+.+=-|-+.|+.+.
T Consensus 422 ~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 422 PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 113556666555 78899999998877654432 2332 3355566788999999888888888875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-11 Score=79.81 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=34.5
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 007808 63 QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVK 112 (589)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 112 (589)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666777777777777777777777777777777777777777766653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.7e-09 Score=102.42 Aligned_cols=295 Identities=9% Similarity=0.032 Sum_probs=173.2
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----
Q 007808 269 YANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKC----- 343 (589)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 343 (589)
+...|++++|++.+..-... +.............+.+.|+.++|..++..+++.+ |.+..-|..+..+..-.
T Consensus 14 l~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 44455555555555443332 22222233334444555555555555555555554 33444444444443211
Q ss_pred CChHHHHHHHhhCCCC--CcchHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHH
Q 007808 344 GIIENAVDVFNSMDTK--DLITWNTIISGLAMHGRG-AGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQ 420 (589)
Q Consensus 344 g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (589)
...+...++|+++... .......+.-.+.....+ ..+...+..+...|+++ +|..|-..|......+-..+++.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 1344445555544321 111111111111111122 24556677778888654 34445455555555555555555
Q ss_pred HhHHhc-------------CCCCChHHH--HHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHH
Q 007808 421 SMAMDY-------------SIVPQIEHY--GCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 421 ~~~~~~-------------~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 483 (589)
...... .-+|....| ..+...|...|++++|+++++++ ...|+ +..|..-...+.+.|++.+|
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 543321 112444334 56678899999999999999987 56675 56677777999999999999
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCch--HHHHH
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRK--SIVRA 561 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~ 561 (589)
.+.++.+.++++.|...-.-.+..+.|+|+.++|.+++....+.+..+.. .++ +.. =....
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~----------------~L~-~mQc~Wf~~e 310 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS----------------NLN-DMQCMWFETE 310 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc----------------CHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999998888654431110 000 011 11244
Q ss_pred HHHHHHHcccCCCCcchHhhhhhcc
Q 007808 562 EANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
.|..|.+.|+.+.|......+..-|
T Consensus 311 ~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 311 CAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6778888888888777666555444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-07 Score=89.60 Aligned_cols=385 Identities=13% Similarity=0.080 Sum_probs=217.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHH
Q 007808 106 VLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSA 185 (589)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 185 (589)
.+.+..+...+.+|..+++.+.... .-.-.|..+.+.|+..|+++.|+++|-+. ..++..|..|.+.|+|++|
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHH
Confidence 3455567778888998888887654 23446777889999999999999999653 4567778999999999999
Q ss_pred HHHHHhCCCC--ChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CCchhH
Q 007808 186 RCLFELAPER--DVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE-RNVFSW 262 (589)
Q Consensus 186 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~ 262 (589)
.++-++...| ....|..-..-+-+.|++.+|.+++-.+..|+. -|.+|-+.|..+..+++.++-.. .-..+.
T Consensus 811 ~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 811 FKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 9999887766 345666666777888999999999888877764 45778888888888887766543 223445
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH--------------HHHHcCCCC
Q 007808 263 NGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHV--------------YAEYNGYQG 328 (589)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------------~~~~~~~~~ 328 (589)
..+..-|-..|+...|...|-+.-+ |...++.|..++-|+.|.++-+ .+...|-..
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggda 955 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDA 955 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHH
Confidence 5566666667777777665544322 2233333444444444433321 111111111
Q ss_pred ChhHH------HHHHHHHHhcCChHHHHHHHhhCC-CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHH-
Q 007808 329 NVCVG------NALIDMYAKCGIIENAVDVFNSMD-TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFI- 400 (589)
Q Consensus 329 ~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~- 400 (589)
-+... ..-++.-+..+.++-|.++-+-.. .+...+...+..-+-..|++++|-+.+-+.++.+ .-..||.
T Consensus 956 avkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln--tynitwcq 1033 (1636)
T KOG3616|consen 956 AVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN--TYNITWCQ 1033 (1636)
T ss_pred HHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc--cccchhhh
Confidence 11111 111222233344444444333222 1222333344445556777777777666655432 1111111
Q ss_pred ------------------HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007808 401 ------------------GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEA 462 (589)
Q Consensus 401 ------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 462 (589)
..+..+.+..+|..|.++-+.-.. ..- +..+..-.+.-...|++.+|..++-+.. +|
T Consensus 1034 avpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~--~~l--~dv~tgqar~aiee~d~~kae~fllran-kp 1108 (1636)
T KOG3616|consen 1034 AVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCE--DLL--ADVLTGQARGAIEEGDFLKAEGFLLRAN-KP 1108 (1636)
T ss_pred cccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhCh--hhh--HHHHhhhhhccccccchhhhhhheeecC-CC
Confidence 112334445556555555433221 111 2233333444555667777776666664 45
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHH----------------HHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 463 DAVIWANLLGSCRVYKNVELAELAL----------------ERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~----------------~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+.. ++-|...+-+..|+++. +..++........+..-+.-..++|+|.+|...+-++
T Consensus 1109 ~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1109 DIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred chH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhh
Confidence 442 12223333333333322 2223334444556666677777888888887776665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.2e-11 Score=77.78 Aligned_cols=50 Identities=38% Similarity=0.575 Sum_probs=44.5
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 007808 359 KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTH 408 (589)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 408 (589)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999999988864
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-09 Score=100.55 Aligned_cols=244 Identities=14% Similarity=0.050 Sum_probs=141.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007808 267 GGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGII 346 (589)
Q Consensus 267 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (589)
+-+.-.|++..++.-.+ ..... -..+......+.+++...|+.+.+. ..+.... +|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 34455666666665444 22211 1122333444556666666554332 2222222 44554554444444333445
Q ss_pred HHHHHHHhhCC-CC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHH
Q 007808 347 ENAVDVFNSMD-TK----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQS 421 (589)
Q Consensus 347 ~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 421 (589)
+.+..-+++.. .+ +..........+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555554433 22 1222222233455678888888777532 3445556677778888888888888888
Q ss_pred hHHhcCCCCChHHH---HHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 422 MAMDYSIVPQIEHY---GCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 422 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
|. .+..|.... .+.+..+.....+.+|..+|+++ ...+++.+.+.+..+....|++++|++.++++++.+|+
T Consensus 157 ~~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 157 MQ---QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HH---CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HH---hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 84 333443222 22233333344688888888888 34567777888888888888999999888888888888
Q ss_pred CCcchHHHHHHHhhcCCh-HHHHHHHHHhh
Q 007808 497 NPANFVMLSNIYGDLGRW-KDVARIKVAMR 525 (589)
Q Consensus 497 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 525 (589)
++.++.+++-+..-.|+. +.+.+++.++.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 888888888888888887 66777888876
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=89.72 Aligned_cols=124 Identities=11% Similarity=-0.012 Sum_probs=105.2
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 007808 417 SYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELE 494 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (589)
.++++.+ .+.|+ .+..+...+...|++++|...|+.+ ...| +...|..+..++...|++++|...|+++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445554 23344 3556788889999999999999987 4455 67788888899999999999999999999999
Q ss_pred CCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 495 PKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 495 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
|+++.++..++.++.+.|++++|++.+++.. ++.|+++.++.+.+++...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al------------------------~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAI------------------------KMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986 78999999999999887544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-07 Score=89.14 Aligned_cols=258 Identities=13% Similarity=0.124 Sum_probs=150.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCch--hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChh
Q 007808 235 LSGYANNGDVEECKRLFEEMPERNVF--SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312 (589)
Q Consensus 235 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 312 (589)
+.+......|.+|+.+++.+...++. -|..+...|...|+++.|.++|-+.- .++..+..|.+.|+|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHH
Confidence 34445566777777777776654433 35566677777777777777775531 1334566677777777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007808 313 FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGE 392 (589)
Q Consensus 313 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 392 (589)
.|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.+..|+. .|..|-+.|..+..+.+..+-.-
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~--- 878 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG--- 878 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---
Confidence 7766544432 3333445555555556677777777777777766654 35667777777776666554321
Q ss_pred CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH-----HHH
Q 007808 393 MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADA-----VIW 467 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-----~~~ 467 (589)
..-..|...+..-+...|++..|..-|-+.- -|.+-++.|...+.|++|.++-+.-+- .+. ..|
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~flw 947 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVAFLW 947 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHHHHH
Confidence 1123455666677777788888877665552 145556777777777777777665420 111 111
Q ss_pred H------HHHHHHhcCCCHHHHHH-------------HHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 468 A------NLLGSCRVYKNVELAEL-------------ALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 468 ~------~l~~~~~~~g~~~~A~~-------------~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
. ..+..+-+.|-.+.|+. +-+.+.+ ..-+..+..++..+...|++++|-+.|-+..
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 1 11122233343333333 2222221 2225567777777888888888877766653
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-07 Score=95.83 Aligned_cols=500 Identities=11% Similarity=-0.002 Sum_probs=263.6
Q ss_pred HHHHHHHHhCCCCCc-cchHHHHHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 007808 20 QIQTQVVTSGLEKSD-YITPRIITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLD 95 (589)
Q Consensus 20 ~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 95 (589)
.++..++.....++. ..|..|...|....+...|...|+...+ .+..++......|++..+++.|..+.-...+..
T Consensus 477 al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka 556 (1238)
T KOG1127|consen 477 ALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA 556 (1238)
T ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc
Confidence 333344444444443 5778888888888888999999988766 455678889999999999999998843332221
Q ss_pred -CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHH---H
Q 007808 96 -AMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWT---S 171 (589)
Q Consensus 96 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ 171 (589)
...-...|....-.+...++...+..-|+..++.. +.|...|..++.+|.++|.+..|.++|.+...-++..+- -
T Consensus 557 ~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk 635 (1238)
T KOG1127|consen 557 PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFK 635 (1238)
T ss_pred hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHH
Confidence 00111223334444567788888999899888865 457789999999999999999999999888764443322 2
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCCC----------ChhHHHHHHHHHhcCCChHHHHHHhcccCC-----------CChhh
Q 007808 172 MINGYISCGDIVSARCLFELAPER----------DVILWNTIVSGYIDVRNMIEARKLFDQMPK-----------KDVIS 230 (589)
Q Consensus 172 l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~ 230 (589)
.....+..|.+.+|+..+..+... -..++-.+...+...|-..++...++...+ .+...
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~ 715 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQ 715 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 233445678888887777655311 111222222222222322222222222110 11111
Q ss_pred HHH-------------------HHHHHHh----cCCH---H---HHHHHHhhCCC--CCchhHHHHHHHHHh----C---
Q 007808 231 WNT-------------------MLSGYAN----NGDV---E---ECKRLFEEMPE--RNVFSWNGLIGGYAN----N--- 272 (589)
Q Consensus 231 ~~~-------------------l~~~~~~----~~~~---~---~A~~~~~~~~~--~~~~~~~~l~~~~~~----~--- 272 (589)
|.. ++..+.+ .+.. | -+.+.+-.-.+ .+..+|..|+..|.+ .
T Consensus 716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 111 1111111 1110 0 00000000000 122334444433332 1
Q ss_pred -CChHHHHHHHHHHHHcCCCCCcHHHHHH---------------------------------HHHHHHhcCChhHHHHHH
Q 007808 273 -GLFFEVLDAFKRMLTEGRVFPNDATIVT---------------------------------VLSACARLGALDFSKWVH 318 (589)
Q Consensus 273 -g~~~~A~~~~~~~~~~~~~~p~~~~~~~---------------------------------l~~~~~~~~~~~~a~~~~ 318 (589)
.+...|+.-+.+.++.. .-+..+|+. +.-.+....+++.|...+
T Consensus 796 ~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af 873 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLC--ANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAF 873 (1238)
T ss_pred chhHHHHHHHHHHHHHHh--hccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHH
Confidence 12234555555555432 122223332 222233344555555555
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC-----C---CCCcchHHHHHHHHHhCCChHHHHHHHHH----
Q 007808 319 VYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSM-----D---TKDLITWNTIISGLAMHGRGAGALSLFHE---- 386 (589)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---- 386 (589)
....... |.+...+-.........|+.-++..+|..- . .++..-|.........+|+.++-+...++
T Consensus 874 ~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 874 SSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred HhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 5554433 223333333333334455555555555431 1 12223333333334455555443332222
Q ss_pred ------HHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHHhcCCHHHHHHHHh
Q 007808 387 ------MKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG----CMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 387 ------m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~ 456 (589)
... |.+.+.+.|...+....+.+.+..|.....+.+.-...+-+...|+ .+...++..|.++.|...+.
T Consensus 953 s~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~ 1031 (1238)
T KOG1127|consen 953 SLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASW 1031 (1238)
T ss_pred HHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhc
Confidence 222 2333456677666667777777777776665543212223444444 34566777888888877766
Q ss_pred hCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc---chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 457 RMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA---NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 457 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
......+......-+.. .-.++++++.+.|++++.+...+.. ....++.+....+..+.|...+-+..
T Consensus 1032 ~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1032 KEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred ccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 55433333332222222 3467999999999999986654333 45556666777888888888765553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-07 Score=89.84 Aligned_cols=432 Identities=14% Similarity=0.078 Sum_probs=230.0
Q ss_pred HHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCCh
Q 007808 41 ITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNC-FTFPIVLKSCVKINAL 116 (589)
Q Consensus 41 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~ 116 (589)
.++....|+++.|...|.+... +|...|+.-..+|+..|++++|++=-.+-++. .|+. ..|.....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 3455678899999999987654 56777888888899999999888766665543 4664 4788888888888999
Q ss_pred HHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHH-----HHHHHhCCCHHHHHHHHHh
Q 007808 117 REGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSM-----INGYISCGDIVSARCLFEL 191 (589)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~a~~~~~~ 191 (589)
++|...|.+-++.. +.+...++.|..++. -+.. +-+.| .++..|..+ -+.+.....+..-++.++.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~--~~~~-~~~~~-----~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYL--EDYA-ADQLF-----TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhh--HHHH-hhhhc-----cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 99999999888864 445667777777761 1111 11111 111111111 1122222222222222221
Q ss_pred CCCC------ChhHHHHHHHHHhcCCCh-HHHHH--Hh-------cccCC--C-------------ChhhHHHHHHHHHh
Q 007808 192 APER------DVILWNTIVSGYIDVRNM-IEARK--LF-------DQMPK--K-------------DVISWNTMLSGYAN 240 (589)
Q Consensus 192 ~~~~------~~~~~~~l~~~~~~~g~~-~~a~~--~~-------~~~~~--~-------------~~~~~~~l~~~~~~ 240 (589)
.+.. |.....++.. +...+.. ..+.. .. ..... | -..-...+.+...+
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~-l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQ-LKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred CcHhhhcccccHHHHHHHHH-HhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 1100 1111000000 0000000 00000 00 00000 0 01112334444444
Q ss_pred cCCHHHHHHHHhhCCCC--CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 007808 241 NGDVEECKRLFEEMPER--NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVH 318 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (589)
..+++.|.+.+....+- ++.-++....+|...|.+.+.+......++.| .-...-|+.+..
T Consensus 237 kk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g--re~rad~klIak--------------- 299 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVG--RELRADYKLIAK--------------- 299 (539)
T ss_pred hhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh--HHHHHHHHHHHH---------------
Confidence 44555555554444431 22223334444555555554444444444433 011111111111
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh-
Q 007808 319 VYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI- 397 (589)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~- 397 (589)
.+..+..+|.+.++++.|+..|.+...+... -....+....++++.......- +.|...
T Consensus 300 -------------~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~ 359 (539)
T KOG0548|consen 300 -------------ALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAE 359 (539)
T ss_pred -------------HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHH
Confidence 1112334555566777777777764421110 1122233445555555554443 334321
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCR 475 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 475 (589)
-...-...+.+.|++..|+..|.+++.. .+-|...|....-+|.+.|.+..|++-.+.. ...|+ ...|..-..++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 1222255667788899999888888763 2456778888888888999888888776665 34453 344555556667
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
...++++|.+.|+++++.+|.+.++...+.+++......+...++.++
T Consensus 438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 778899999999999999999888888888887764444444555444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.5e-08 Score=85.49 Aligned_cols=207 Identities=12% Similarity=0.052 Sum_probs=106.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
+..+...|+...|+.....+++.. +.|...+..-..+|...|++..|+.-++...+.. ..+...+-.+...+...|+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhh
Confidence 344556677777777777776643 3455555555666666666666666555555543 2233444445555555666
Q ss_pred hHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHH--HHHHhccCcHHHHHHHHHHhH
Q 007808 346 IENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGI--LCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 346 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~ 423 (589)
.+.++...++..+-|+.. ..+.-.|+++.+- ..+| +......++|.++.+..+...
T Consensus 239 ~~~sL~~iRECLKldpdH--------------K~Cf~~YKklkKv--------~K~les~e~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 239 AENSLKEIRECLKLDPDH--------------KLCFPFYKKLKKV--------VKSLESAEQAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred HHHHHHHHHHHHccCcch--------------hhHHHHHHHHHHH--------HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666655555544322211 1111111111110 0000 011223455555555555554
Q ss_pred HhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 424 MDYSIVPQ-----IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 424 ~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+. .|. ...+..+-.++...|++.+|++.-.++ .+.|+ ..++.--..+|.-...++.|+.-|+++.+.+|+
T Consensus 297 k~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 297 KN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred hc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 32 233 112223344555666777777666655 44554 555555556666666777777777777777776
Q ss_pred CCcc
Q 007808 497 NPAN 500 (589)
Q Consensus 497 ~~~~ 500 (589)
|..+
T Consensus 374 n~~~ 377 (504)
T KOG0624|consen 374 NTRA 377 (504)
T ss_pred cHHH
Confidence 5543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-06 Score=86.18 Aligned_cols=464 Identities=15% Similarity=0.158 Sum_probs=275.6
Q ss_pred cchHHHHHHHHccCChhHHHHHhhcCCC-CCcccHHHH-----HHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHH
Q 007808 35 YITPRIITACAQLKQMTYARKMFDKITD-QNVVSWNAM-----FNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLK 108 (589)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l-----l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 108 (589)
.-+..+.+.|.+.|-...|++.+..+.. ........+ +-.|.-.-.++++.+.++.|...++..|..+...+..
T Consensus 607 yDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 607 YDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred ccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3366788889999999999988887654 111111111 2234444578889999999998888888777777776
Q ss_pred HHhccCChHHHHHHHHHHHHh-----------CCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC--------------
Q 007808 109 SCVKINALREGEELHCLVLKN-----------GFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE-------------- 163 (589)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------- 163 (589)
-|...=..+...++|+....- ++..|+.+.--.|.+.++.|++.+.+++.++-.-
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 666655566677777765431 3456677777788999999999998888775431
Q ss_pred -----C------------CeehH------HHHHHHHHhCCCHH-------------------------------------
Q 007808 164 -----R------------NVVVW------TSMINGYISCGDIV------------------------------------- 183 (589)
Q Consensus 164 -----~------------~~~~~------~~l~~~~~~~g~~~------------------------------------- 183 (589)
| |.+.| ...|..|++.=++.
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 1 11111 12233333322111
Q ss_pred ---------HHHHHHHhCC---CCChhHHHHHHHHHhcCCChHH-HHH---Hhccc--------CCC-------------
Q 007808 184 ---------SARCLFELAP---ERDVILWNTIVSGYIDVRNMIE-ARK---LFDQM--------PKK------------- 226 (589)
Q Consensus 184 ---------~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~-a~~---~~~~~--------~~~------------- 226 (589)
--..+++... ..|..+++++...|...++-.+ -.+ .++.. .+|
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 1111111111 1267788888877776543222 111 00000 000
Q ss_pred --------ChhhHHHHHHHHHhcCCHHHHHHHHhhC-----------CC------CCchhHHHHHHHHHhCCChHHHHHH
Q 007808 227 --------DVISWNTMLSGYANNGDVEECKRLFEEM-----------PE------RNVFSWNGLIGGYANNGLFFEVLDA 281 (589)
Q Consensus 227 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~~-----------~~------~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (589)
....|....+.+.+..+.+-=.+++.+- .+ .|+..-..-+.++...+-..+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 1112233333344444433322332111 10 3444555667778888888888888
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----------------------CCChhHHHHHHH
Q 007808 282 FKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGY-----------------------QGNVCVGNALID 338 (589)
Q Consensus 282 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~ 338 (589)
+++++-.+........+..++-.-+-..+...+.++..++-..+. ..+....+.|+.
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie 1086 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE 1086 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH
Confidence 888765431111112222222211222233333333333322211 112222222221
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
.-+.++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+ ..|+..|..++..+.+.|.|++-.++
T Consensus 1087 ---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1087 ---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred ---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 1233444444433333 345799999999999999999887743 23567799999999999999999999
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 419 FQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
+..++++ .-+|... ..|+.+|.+.++..+-++++. -|+......+..-|...|.++.|.-+|.. .
T Consensus 1156 L~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------v 1220 (1666)
T KOG0985|consen 1156 LLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------V 1220 (1666)
T ss_pred HHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------h
Confidence 8877543 5566654 468899999999988777664 57777788888899999999998888865 4
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.-|..|+..+...|.++.|...-++.
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56788888888889888887765555
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=100.21 Aligned_cols=249 Identities=13% Similarity=0.074 Sum_probs=164.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSL 383 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 383 (589)
-+.-.|++..+..-.. ......+.......-+.+++...|+.+.++.-...-..|.......+...+...++.+.++.-
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHH
Confidence 3445567766664443 222211223344556778889999988776665555555655555555544443555566666
Q ss_pred HHHHHHCCCCCCHhHH-HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC
Q 007808 384 FHEMKNAGEMPDGITF-IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIE 461 (589)
Q Consensus 384 ~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 461 (589)
+++.......++..++ ......+...|++++|++++... .+.......+.+|.+.++++.|.+.++.| ...
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6554443333233333 33345677889999999886532 45666777889999999999999999999 445
Q ss_pred CCHHHHHHHHHHH----hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccce
Q 007808 462 ADAVIWANLLGSC----RVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSS 537 (589)
Q Consensus 462 p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 537 (589)
.|... ..+..++ .-.+.+.+|..+|+++.+..|.++..++.++.++...|+|++|.+++++..
T Consensus 162 eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al------------ 228 (290)
T PF04733_consen 162 EDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL------------ 228 (290)
T ss_dssp CCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC------------
T ss_pred CcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------
Confidence 55433 3344332 223468999999999988877778899999999999999999999998874
Q ss_pred eeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCC-CcchHhhhhhc
Q 007808 538 IEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNH-PLTFIVVIFST 585 (589)
Q Consensus 538 ~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 585 (589)
+.+|++++++.++.-+..-+|+.++ +.++++-|...
T Consensus 229 ------------~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 229 ------------EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp ------------CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred ------------HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 7889999999999999999999966 55677766644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4e-06 Score=83.51 Aligned_cols=204 Identities=15% Similarity=0.144 Sum_probs=110.5
Q ss_pred CccchHHHHHHHHccCChhHHHHHhhcCCC-----------CCc-ccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCc
Q 007808 33 SDYITPRIITACAQLKQMTYARKMFDKITD-----------QNV-VSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNC 100 (589)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 100 (589)
+..+|..+.++|.+.++++-|.-.+-.|.. .|. ..-..+.-.-.+.|..++|..+|.+.++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 446777888888888888877777766653 111 11112222234567777777777776643
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC-----------------
Q 007808 101 FTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE----------------- 163 (589)
Q Consensus 101 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------- 163 (589)
..|-..|-..|.+++|.++-+.--+..+ ..+|..-..-+-..++.+.|++.|++...
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 2333444456777777666543222111 12344444444555667777777665432
Q ss_pred ------CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHH
Q 007808 164 ------RNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSG 237 (589)
Q Consensus 164 ------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 237 (589)
+|...|.-...-+-..|+.+.|+.+|.... -|.++.+..+-.|+.++|-++-++- .|......+...
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~ 976 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARM 976 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHH
Confidence 244445555555555666666666666432 2334444444455555554444431 334444455566
Q ss_pred HHhcCCHHHHHHHHhhCC
Q 007808 238 YANNGDVEECKRLFEEMP 255 (589)
Q Consensus 238 ~~~~~~~~~A~~~~~~~~ 255 (589)
|-..|++.+|...|.+..
T Consensus 977 YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 977 YENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 666666666666655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2e-07 Score=81.56 Aligned_cols=406 Identities=11% Similarity=0.024 Sum_probs=224.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHc
Q 007808 68 WNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYST 147 (589)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 147 (589)
+.+++..+.+..++..|++++..-.++. +.+......|..+|....++..|...|+++-..- |...-|...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY------ 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLY------ 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHH------
Confidence 4555555666666666666666555543 1144445555555555566666666666654432 222222210
Q ss_pred CCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCC-hh--HHHHHHHHHhcCCChHHHHHHhcccC
Q 007808 148 GKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERD-VI--LWNTIVSGYIDVRNMIEARKLFDQMP 224 (589)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~--~~~~l~~~~~~~g~~~~a~~~~~~~~ 224 (589)
-...+.+.+.+.+|+++...|.+.+ .. ....-.....+.+++..+..++++..
T Consensus 84 ------------------------~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 84 ------------------------QAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred ------------------------HHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence 1223334444455555554444321 11 11111122345677777888888776
Q ss_pred C-CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHH--
Q 007808 225 K-KDVISWNTMLSGYANNGDVEECKRLFEEMPE----RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDAT-- 297 (589)
Q Consensus 225 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-- 297 (589)
. .+..+.+.......+.|+.+.|.+-|+...+ .....||. .-+..+.|+++.|+++..+++++| ++-.+..
T Consensus 140 ~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG-~r~HPElgI 217 (459)
T KOG4340|consen 140 SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERG-IRQHPELGI 217 (459)
T ss_pred CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhh-hhcCCccCc
Confidence 3 5666666667777788999999999988876 34456664 445567789999999999999887 4322110
Q ss_pred --HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----CcchHHHHHHH
Q 007808 298 --IVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK-----DLITWNTIISG 370 (589)
Q Consensus 298 --~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~ 370 (589)
-...+. ....|+.- . +... .-+..+|.-.-.+.+.|+.+.|.+-+..|+.+ |++|...+.-.
T Consensus 218 Gm~tegiD-vrsvgNt~---~----lh~S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 218 GMTTEGID-VRSVGNTL---V----LHQS---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred cceeccCc-hhcccchH---H----HHHH---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 000000 00000000 0 0000 01223344444567889999999999999854 77776655332
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-CCHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA-GRLA 449 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 449 (589)
- ..+++.+..+-++-+...+ +-...||..++-.|++..-++-|..++.+-....-.-.+...|+ |++++.-+ -..+
T Consensus 287 n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 287 N-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPE 363 (459)
T ss_pred c-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHH
Confidence 2 2456666666666666643 23567899999999999999999888755421100012233333 45555444 3567
Q ss_pred HHHHHHhhCCCCC--CHHHHHHHHHHHhcCCC---HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 450 EAVDFVKRMPIEA--DAVIWANLLGSCRVYKN---VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 450 ~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+|++-++.+...- .......-++.-...++ ...|++-|+..+++-- .+....+++|.+..++.-++++|..-
T Consensus 364 ea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 364 EAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHH
Confidence 7766665542000 00111111111122222 3345555666666432 15677889999999999999998766
Q ss_pred h
Q 007808 525 R 525 (589)
Q Consensus 525 ~ 525 (589)
.
T Consensus 441 v 441 (459)
T KOG4340|consen 441 V 441 (459)
T ss_pred H
Confidence 4
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-07 Score=93.95 Aligned_cols=223 Identities=17% Similarity=0.135 Sum_probs=139.9
Q ss_pred HHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhC-C-------C-CCCcccHHHHHHHHhccC
Q 007808 44 CAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKL-D-------A-MPNCFTFPIVLKSCVKIN 114 (589)
Q Consensus 44 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~-------~-~p~~~~~~~ll~~~~~~~ 114 (589)
|...|+.+.|.+-.+-+. ....|..+.+.|.+..+.+-|.-.+..|... | . .|+ .+=..+.-.....|
T Consensus 738 yvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred EEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 456788888888776654 4567899999999888888887777666431 1 1 122 22222333345678
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC-CCeehHHHHHHHHHhCCCHHHHHHHHHhCC
Q 007808 115 ALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE-RNVVVWTSMINGYISCGDIVSARCLFELAP 193 (589)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 193 (589)
.+++|..+|.+-.+.. .|-+.|-..|.+++|.++-+.-.. .-..+|.....-+-..++++.|++.|++..
T Consensus 815 MlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred hHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 8999999999886643 355667788999999988765333 122467777777778899999999998764
Q ss_pred CC-----------------------ChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 007808 194 ER-----------------------DVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRL 250 (589)
Q Consensus 194 ~~-----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 250 (589)
.+ |...|.-....+-..|+.+.|+.+|... .-|..++...|-.|+.++|-++
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI~C~qGk~~kAa~i 960 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRIKCIQGKTDKAARI 960 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheeeEeeccCchHHHHH
Confidence 32 3333333333344455555555555432 2344444555555555555555
Q ss_pred HhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 007808 251 FEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRM 285 (589)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (589)
-++- .|..+...|.+.|-..|++.+|+..|.+.
T Consensus 961 A~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 961 AEES--GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4432 24445556667777777777777766554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-08 Score=85.85 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=129.0
Q ss_pred CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHH
Q 007808 393 MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANL 470 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 470 (589)
.|+......+...+...|+-+....+...... ....|......++....+.|++.+|+..+.+. ..++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 55333335566677777888888887776543 33445556667888899999999999999988 345688889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccc
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLS 550 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (589)
..+|.+.|+.+.|...|.+++++.|+++..+++++..|.-.|++++|..++.+.. .
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~------------------------l 196 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY------------------------L 196 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH------------------------h
Confidence 9999999999999999999999999999999999999999999999999988885 3
Q ss_pred cCCCchHHHHHHHHHHHHcccCCCCcchH
Q 007808 551 RELDRKSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 551 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
..|.+..+..+|+.+....|+.++|.++.
T Consensus 197 ~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 197 SPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred CCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 34558888888888888888888876654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.00 E-value=9e-07 Score=86.48 Aligned_cols=293 Identities=10% Similarity=-0.045 Sum_probs=168.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CCch---hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007808 230 SWNTMLSGYANNGDVEECKRLFEEMPE---RNVF---SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLS 303 (589)
Q Consensus 230 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 303 (589)
.|..+...+...|+.+.+.+.+....+ ++.. ........+...|++++|.+.+++..+.. +.+...+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hH
Confidence 344444555555666555444444332 1211 12222345667788888888888887754 223333332 21
Q ss_pred HHHh----cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCC
Q 007808 304 ACAR----LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGR 376 (589)
Q Consensus 304 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 376 (589)
.+.. .+..+.+.+.+.. .....+........+...+...|++++|...+++..+ .+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 2222 3444444444433 1111222334445566778888999999888887763 355677788888889999
Q ss_pred hHHHHHHHHHHHHCCC-CCCH--hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH-H--HHHHHHHhcCCHHH
Q 007808 377 GAGALSLFHEMKNAGE-MPDG--ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHY-G--CMVDLLARAGRLAE 450 (589)
Q Consensus 377 ~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~ 450 (589)
+++|..++++...... .|+. ..|..+...+...|++++|..++++........+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999988876421 1222 235567778888899999999998875321111222111 1 22333333443222
Q ss_pred HHHH---HhhC-CCCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-C--------CCCcchHHHHHHHhhcCCh
Q 007808 451 AVDF---VKRM-PIEAD---AVIWANLLGSCRVYKNVELAELALERLTELE-P--------KNPANFVMLSNIYGDLGRW 514 (589)
Q Consensus 451 A~~~---~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~ 514 (589)
+.+. .... +..|. .........++...|+.++|...++.+.... + .........+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111 11011 1222245567788999999999998886622 1 1245556777788899999
Q ss_pred HHHHHHHHHhhh
Q 007808 515 KDVARIKVAMRD 526 (589)
Q Consensus 515 ~~A~~~~~~~~~ 526 (589)
++|.+.+.+...
T Consensus 324 ~~A~~~L~~al~ 335 (355)
T cd05804 324 ATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999999888753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=93.30 Aligned_cols=181 Identities=10% Similarity=-0.024 Sum_probs=113.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-H---hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-G---ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI-EH 434 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~ 434 (589)
....+..++..+...|++++|...|+++... .|+ . ..+..+..++...|++++|...++++.+...-.|.. ..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4445666666677777777777777777663 232 1 345556666777777777777777776543222221 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc--------------
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPAN-------------- 500 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------------- 500 (589)
+..+..++.+. +...+...|++++|.+.++++++..|+++..
T Consensus 110 ~~~~g~~~~~~------------------------~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~ 165 (235)
T TIGR03302 110 YYLRGLSNYNQ------------------------IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL 165 (235)
T ss_pred HHHHHHHHHHh------------------------cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH
Confidence 33333444332 0001112244555555555555555554332
Q ss_pred ---hHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 501 ---FVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 501 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
...++..|.+.|++++|+..+++..+.. ..+|..+.++..++++|..+|+..+|+.
T Consensus 166 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 166 AGKELYVARFYLKRGAYVAAINRFETVVENY---------------------PDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHC---------------------CCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 2367788999999999999999986221 1246667999999999999999999999
Q ss_pred hHhhhhhccc
Q 007808 578 FIVVIFSTFA 587 (589)
Q Consensus 578 ~~~~~~~~~~ 587 (589)
+...|..-|.
T Consensus 225 ~~~~l~~~~~ 234 (235)
T TIGR03302 225 AAAVLGANYP 234 (235)
T ss_pred HHHHHHhhCC
Confidence 9988877663
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-06 Score=85.34 Aligned_cols=305 Identities=10% Similarity=-0.007 Sum_probs=192.5
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHH--
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATI-VTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNA-- 335 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 335 (589)
...|..+...+...|+.+.+.+.+....+.....++.... ......+...|+++.|..+++...+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3456677777888888998888777776654223333222 222334678899999999999988874 444444442
Q ss_pred -HHHHHHhcCChHHHHHHHhhCCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc
Q 007808 336 -LIDMYAKCGIIENAVDVFNSMDTKDL---ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGL 411 (589)
Q Consensus 336 -l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 411 (589)
........+..+.+.+.+......++ .....+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222234566667776665333222 344456678889999999999999999853 3355677888889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC--C-HHHH-H--HHHHHHhcCCCHHH
Q 007808 412 VEEGLSYFQSMAMDYSIVPQI--EHYGCMVDLLARAGRLAEAVDFVKRMP-IEA--D-AVIW-A--NLLGSCRVYKNVEL 482 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p--~-~~~~-~--~l~~~~~~~g~~~~ 482 (589)
+++|..++++........|+. ..|..+...+...|++++|.+++++.. ..| . .... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999887532222333 345578899999999999999999862 223 1 1111 1 22233344443322
Q ss_pred HHHH---HHHHHccCCCC--CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchH
Q 007808 483 AELA---LERLTELEPKN--PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKS 557 (589)
Q Consensus 483 A~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 557 (589)
+.+. ........|.. ...-...+.++...|+.++|.+.++.+.......+. ....+....
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~---------------~~~~~~~~~ 308 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD---------------NKQPARDVG 308 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc---------------hhhhHHhhh
Confidence 2222 11111111221 222235677788999999999999998633221000 012334566
Q ss_pred HHHHHHHHHHHcccCCCCcchHh
Q 007808 558 IVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 558 ~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
+....+.++...|+.++|++.+.
T Consensus 309 ~~~l~A~~~~~~g~~~~A~~~L~ 331 (355)
T cd05804 309 LPLAEALYAFAEGNYATALELLG 331 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 67778888888888887776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.4e-08 Score=90.12 Aligned_cols=155 Identities=14% Similarity=0.113 Sum_probs=118.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNAGEMPDG-ITFIGILCACTHMG-LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR 444 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (589)
+-..+...++.++|+.+..++++ +.|+. ..|+.-..++...| ++++++..++++.+. .+.+..+|+....++.+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHH
Confidence 33455667889999999999998 46654 45655555666667 679999999998763 33455667766666666
Q ss_pred cCCH--HHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhc---CCh---
Q 007808 445 AGRL--AEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDL---GRW--- 514 (589)
Q Consensus 445 ~g~~--~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~--- 514 (589)
.|+. ++++++++++ ...| +...|+....++...|+++++++.++++++.+|.|..+|...+.++.+. |.+
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 7763 6788888777 4455 6788999999999999999999999999999999999999999998776 333
Q ss_pred -HHHHHHHHHhh
Q 007808 515 -KDVARIKVAMR 525 (589)
Q Consensus 515 -~~A~~~~~~~~ 525 (589)
++++.+.+++.
T Consensus 199 ~e~el~y~~~aI 210 (320)
T PLN02789 199 RDSELKYTIDAI 210 (320)
T ss_pred HHHHHHHHHHHH
Confidence 45666665654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6e-08 Score=84.55 Aligned_cols=144 Identities=8% Similarity=0.072 Sum_probs=111.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007808 368 ISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGR 447 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 447 (589)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457778887776554433321 11 012235677788877777765 335668889999999999999
Q ss_pred HHHHHHHHhhC-CCCC-CHHHHHHHHHHH-hcCCC--HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHH
Q 007808 448 LAEAVDFVKRM-PIEA-DAVIWANLLGSC-RVYKN--VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKV 522 (589)
Q Consensus 448 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 522 (589)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 4556 566677777764 67777 5999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 007808 523 AMR 525 (589)
Q Consensus 523 ~~~ 525 (589)
++.
T Consensus 169 ~aL 171 (198)
T PRK10370 169 KVL 171 (198)
T ss_pred HHH
Confidence 996
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-08 Score=101.71 Aligned_cols=93 Identities=10% Similarity=0.091 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
+..+-.|..+..+.|++++|..+++.. .+.|+. .....+..++.+.+++++|...+++++..+|+++..+..++.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 444444455555555555555555544 334432 223333344455555555555555555555555555555555555
Q ss_pred hcCChHHHHHHHHHh
Q 007808 510 DLGRWKDVARIKVAM 524 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~ 524 (589)
+.|++++|+.+|+++
T Consensus 166 ~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 166 EIGQSEQADACFERL 180 (694)
T ss_pred HhcchHHHHHHHHHH
Confidence 555555555555554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-07 Score=87.50 Aligned_cols=203 Identities=9% Similarity=0.066 Sum_probs=144.5
Q ss_pred HHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcH--H
Q 007808 340 YAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHG-RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLV--E 413 (589)
Q Consensus 340 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~--~ 413 (589)
+...++.++|+.+..++... +..+|+....++...| ++++++..++++.+.. +-+..+|......+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 44456677777777766633 3345555555666666 5788899988888753 23445566555555555653 6
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcC---CC----HHHHH
Q 007808 414 EGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVY---KN----VELAE 484 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~----~~~A~ 484 (589)
++..++++++. .-+-+...|+....++.+.|++++|++.++++ ...| +...|+.....+.+. |. .++++
T Consensus 126 ~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 77888877765 23445778888888888889999999999888 3334 566777766665444 22 35788
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHhhc----CChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHH
Q 007808 485 LALERLTELEPKNPANFVMLSNIYGDL----GRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVR 560 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 560 (589)
++..+++.++|+|..+|..+..++... ++..+|.+...+.. +.+|+.+.+++
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~------------------------~~~~~s~~al~ 259 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL------------------------SKDSNHVFALS 259 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh------------------------cccCCcHHHHH
Confidence 888999999999999999999999883 44566777776653 56799999999
Q ss_pred HHHHHHHHc
Q 007808 561 AEANMIKLL 569 (589)
Q Consensus 561 ~l~~~~~~~ 569 (589)
.|+.+|.+.
T Consensus 260 ~l~d~~~~~ 268 (320)
T PLN02789 260 DLLDLLCEG 268 (320)
T ss_pred HHHHHHHhh
Confidence 999999763
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-07 Score=91.28 Aligned_cols=377 Identities=15% Similarity=0.088 Sum_probs=216.0
Q ss_pred hHHHHHHHccCCCCCe---ehHHHHHHHHHhCCCHHHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHHhcccC
Q 007808 151 IEAAYKVFGEMDERNV---VVWTSMINGYISCGDIVSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKLFDQMP 224 (589)
Q Consensus 151 ~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 224 (589)
...|...|-+....|+ ..|..|...|...-+...|.+.|+...+. |...+....+.|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 5555555554444332 46778888888777888888888877654 45567777888888888888887743332
Q ss_pred CCC-----hhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH
Q 007808 225 KKD-----VISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA 296 (589)
Q Consensus 225 ~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~ 296 (589)
+.+ ...|....-.|.+.++...|..-|+.... .|...|..+..+|...|++..|+++|.++.. +.|+..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s~ 630 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLSK 630 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHhH
Confidence 211 12233344556677888888888887775 3667788888888888888888888888776 345543
Q ss_pred HHHHH--HHHHHhcCChhHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC----------
Q 007808 297 TIVTV--LSACARLGALDFSKWVHVYAEYNG------YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---------- 358 (589)
Q Consensus 297 ~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 358 (589)
|... ....+..|.+.++...+..+.... ...-..++-.+...+...|-..+|.+.++.-.+
T Consensus 631 -y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 631 -YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 2222 223466778888877777655421 111222333333333334444444444443221
Q ss_pred -CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcH---H---HHHHHHHHhHHhcCCCCC
Q 007808 359 -KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLV---E---EGLSYFQSMAMDYSIVPQ 431 (589)
Q Consensus 359 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~~~~~~~~~ 431 (589)
.+...|-.+.+ |..+|-... .. .|+......+..-....+.. + -+.+.+-.-. .+..+
T Consensus 710 ~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~ 774 (1238)
T KOG1127|consen 710 QSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIH 774 (1238)
T ss_pred hhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhc
Confidence 12222222222 222222221 00 11111111111111111111 1 1111111111 11223
Q ss_pred hHHHHHHHHHHHh-------c-CCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcch
Q 007808 432 IEHYGCMVDLLAR-------A-GRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANF 501 (589)
Q Consensus 432 ~~~~~~l~~~~~~-------~-g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 501 (589)
+..|..|+..|.+ . .+...|+..+++. .. ..+..+|+.|.-. ...|++.-|...|-+.+..+|.+...|
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W 853 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQW 853 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhe
Confidence 4455555554443 1 2234677777766 22 3456666666544 666888889999999888999988899
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 502 VMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 502 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
.+++.++.+..+++-|...+.+.. .++|+|...+--.+.+-.+.|+
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~q------------------------SLdP~nl~~WlG~Ali~eavG~ 899 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQ------------------------SLDPLNLVQWLGEALIPEAVGR 899 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhh------------------------hcCchhhHHHHHHHHhHHHHHH
Confidence 999999999999999999988875 6777777766555555555553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.8e-06 Score=92.27 Aligned_cols=353 Identities=12% Similarity=0.020 Sum_probs=213.8
Q ss_pred HHHHHhCCCHHHHHHHHHhCCCCChh--HHHHHHHHHhcCCChHHHHHHhcccCC----CChhhHHHHHHHHHhcCCHHH
Q 007808 173 INGYISCGDIVSARCLFELAPERDVI--LWNTIVSGYIDVRNMIEARKLFDQMPK----KDVISWNTMLSGYANNGDVEE 246 (589)
Q Consensus 173 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 246 (589)
...+...|++.+|..........+.. ............|+++.+...++.+.. .+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34455566666666655555433221 112223344567788877777776632 223333344455567888888
Q ss_pred HHHHHhhCCC----CC---c-----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCC
Q 007808 247 CKRLFEEMPE----RN---V-----FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPND----ATIVTVLSACARLGA 310 (589)
Q Consensus 247 A~~~~~~~~~----~~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~ 310 (589)
+...+....+ .+ . .....+...+...|++++|...++.....- ...+. .....+...+...|+
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCC
Confidence 8888776532 11 1 112223345667899999999998877632 11121 234455556778899
Q ss_pred hhHHHHHHHHHHHcCC---CC--ChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------CC----cchHHHHHHHHHhC
Q 007808 311 LDFSKWVHVYAEYNGY---QG--NVCVGNALIDMYAKCGIIENAVDVFNSMDT-------KD----LITWNTIISGLAMH 374 (589)
Q Consensus 311 ~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~ 374 (589)
++.|...+.......- .+ .......+...+...|+++.|...+++... ++ ...+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999888887764311 11 123445566778889999999888776431 11 12344455667778
Q ss_pred CChHHHHHHHHHHHHC--CCCCC--HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH-----HHHHHHHHhc
Q 007808 375 GRGAGALSLFHEMKNA--GEMPD--GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHY-----GCMVDLLARA 445 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~ 445 (589)
|++++|...+++.... ...+. ...+..+.......|++++|...++.+..-.........+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 9999999988887652 11122 2334445667778899999998888774321111111111 1122445567
Q ss_pred CCHHHHHHHHhhCCC-C-CCHH----HHHHHHHHHhcCCCHHHHHHHHHHHHccC------CCCCcchHHHHHHHhhcCC
Q 007808 446 GRLAEAVDFVKRMPI-E-ADAV----IWANLLGSCRVYKNVELAELALERLTELE------PKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 446 g~~~~A~~~~~~~~~-~-p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~ 513 (589)
|+.+.|.+.+..... . .... .+..+..++...|++++|...++++.... +....++..++.++.+.|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 889999888876631 1 1111 13345567788899999999999888742 1223467778888999999
Q ss_pred hHHHHHHHHHhhh
Q 007808 514 WKDVARIKVAMRD 526 (589)
Q Consensus 514 ~~~A~~~~~~~~~ 526 (589)
.++|.+.+.+..+
T Consensus 747 ~~~A~~~L~~Al~ 759 (903)
T PRK04841 747 KSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888864
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.9e-05 Score=80.55 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=81.1
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID 338 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (589)
+..|..+..+-.+.|...+|++-|-+. .|+..|..++..+.+.|.+++-..++..+.+..-.|.+ -+.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 457888888888889988888776543 36677888999999999999998888888777655554 356888
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLF 384 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 384 (589)
+|++.+++.+.++++. .||........+-|...|.++.|.-+|
T Consensus 1175 AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 8999888877766543 344444444555555555555554444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=85.62 Aligned_cols=180 Identities=12% Similarity=0.008 Sum_probs=131.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-Cc---chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh---
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-DL---ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI--- 397 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--- 397 (589)
+.....+..++..+...|++++|...|+++.. | ++ .++..+..++...|++++|+..++++.+. .|+..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchH
Confidence 34566778888899999999999999998763 2 22 36677889999999999999999999984 44322
Q ss_pred -HHHHHHHHHhcc--------CcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHH
Q 007808 398 -TFIGILCACTHM--------GLVEEGLSYFQSMAMDYSIVPQI-EHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIW 467 (589)
Q Consensus 398 -~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 467 (589)
++..+..++... |++++|.+.++.+... .|+. ..+..+... +...... . ...
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~---~--------~~~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL---A--------GKE 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH---H--------HHH
Confidence 455556666654 7899999999999764 3443 222222111 1111110 0 011
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 468 ANLLGSCRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
..+...+.+.|++++|...++++++..|+++ .++..++.++...|++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2455678899999999999999999877654 6899999999999999999999998863
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-07 Score=88.80 Aligned_cols=249 Identities=14% Similarity=0.046 Sum_probs=181.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
..-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 445678888999999999988876 3456678888888888888888888888888876 6678888888889999999
Q ss_pred hHHHHHHHhhCCCCCc-chHHHHH---------HHHHhCCChHHHHHHHHHH-HHCCCCCCHhHHHHHHHHHhccCcHHH
Q 007808 346 IENAVDVFNSMDTKDL-ITWNTII---------SGLAMHGRGAGALSLFHEM-KNAGEMPDGITFIGILCACTHMGLVEE 414 (589)
Q Consensus 346 ~~~A~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~A~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~g~~~~ 414 (589)
-..|.+.++.-....+ ..|.... ..+..........++|-++ ...+..+|+.....|.-.|.-.|++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 8899888876531100 0000000 0111112233444454444 445544677777788888889999999
Q ss_pred HHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 415 GLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
|...|+.++. ++| |..+||.|...+....+.++|+..|.++ .+.|+. .....|..+|...|.+++|.++|-.++
T Consensus 449 aiDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999984 455 4789999999999999999999999998 678864 556678889999999999999999999
Q ss_pred ccCCCC----------CcchHHHHHHHhhcCChHHHHHH
Q 007808 492 ELEPKN----------PANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 492 ~~~p~~----------~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
.+.+.+ ..+|..|=.++.-.++.|-+.+.
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 876541 13555555556666666544443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-07 Score=78.42 Aligned_cols=124 Identities=10% Similarity=-0.014 Sum_probs=101.9
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C
Q 007808 381 LSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P 459 (589)
Q Consensus 381 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 459 (589)
..++++..+ +.|+. +..+...+...|++++|...|+.++. --+.+...|..+..++.+.|++++|+..|+++ .
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 356666666 45654 45567788899999999999999874 23446788899999999999999999999998 4
Q ss_pred CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 460 IEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 460 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
..| +...+..+..++...|++++|+..|++++++.|+++..+...+.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 445 677888888999999999999999999999999999999888777644
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-06 Score=75.88 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=100.6
Q ss_pred cCChHHHHHHHhhCC-CCCcchHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHhccCcHHHHHHHHH
Q 007808 343 CGIIENAVDVFNSMD-TKDLITWNTIISGLAMHGRGAGALSLFHEMKN-AGEMPDGITFIGILCACTHMGLVEEGLSYFQ 420 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (589)
.+++..+..+.++.. +.+..+.+.......+.|+++.|++-|+...+ .|..| ...|+..+ +..+.|+++.|+++..
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYSSRQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHH
Confidence 344555555555554 23334444444444555566666655555554 23322 23343322 2334455555555555
Q ss_pred HhHHhcCCC-------------CCh---------------HHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHHH
Q 007808 421 SMAMDYSIV-------------PQI---------------EHYGCMVDLLARAGRLAEAVDFVKRMP----IEADAVIWA 468 (589)
Q Consensus 421 ~~~~~~~~~-------------~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~ 468 (589)
+++.+ |++ ||+ ..+|.-...+.+.|+++.|.+.+-.|+ ...|+.|.+
T Consensus 203 EIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLH 281 (459)
T KOG4340|consen 203 EIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLH 281 (459)
T ss_pred HHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhh
Confidence 55432 221 111 112222344667888888888888884 334667766
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
.+.-. -..+++....+-++-+++++|-.++++.++.-+|++..-++-|..++-+
T Consensus 282 N~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 282 NQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55422 2345566677777778888887788888888888888888877766443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-05 Score=89.53 Aligned_cols=362 Identities=11% Similarity=-0.031 Sum_probs=227.7
Q ss_pred HHHHHhcCCChHHHHHHhcccCCCChh--hHHHHHHHHHhcCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCCChH
Q 007808 203 IVSGYIDVRNMIEARKLFDQMPKKDVI--SWNTMLSGYANNGDVEECKRLFEEMPE----RNVFSWNGLIGGYANNGLFF 276 (589)
Q Consensus 203 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~ 276 (589)
....+...|++.+|..........+.. ............|+++.+..+++.+.. .+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 344456677777776665554332111 111222345567888888888887742 23333344556667889999
Q ss_pred HHHHHHHHHHHcCC-C----CCcH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCC
Q 007808 277 EVLDAFKRMLTEGR-V----FPND--ATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN----VCVGNALIDMYAKCGI 345 (589)
Q Consensus 277 ~A~~~~~~~~~~~~-~----~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 345 (589)
+|...+......-. . .+.. .........+...|+++.|...++.........+ ....+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 99999988755310 0 1111 1222233446688999999999998876321112 1234556677788999
Q ss_pred hHHHHHHHhhCCC-------CC--cchHHHHHHHHHhCCChHHHHHHHHHHHH----CCCC--C-CHhHHHHHHHHHhcc
Q 007808 346 IENAVDVFNSMDT-------KD--LITWNTIISGLAMHGRGAGALSLFHEMKN----AGEM--P-DGITFIGILCACTHM 409 (589)
Q Consensus 346 ~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~--p-~~~~~~~l~~~~~~~ 409 (589)
+++|...+.+... +. ..++..+...+...|++++|...+++... .+.. | ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999999887652 11 13455567778899999999999888665 2211 1 123344555667778
Q ss_pred CcHHHHHHHHHHhHHhcC-CCC--ChHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHH-----HHHHHHHhcC
Q 007808 410 GLVEEGLSYFQSMAMDYS-IVP--QIEHYGCMVDLLARAGRLAEAVDFVKRMP----IEADAVIW-----ANLLGSCRVY 477 (589)
Q Consensus 410 g~~~~A~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~-----~~l~~~~~~~ 477 (589)
|++++|...+++...... ..+ ....+..+...+...|++++|.+.++++. .......+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 999999999887754211 112 23445556778889999999998887761 11111111 1112334568
Q ss_pred CCHHHHHHHHHHHHccCCCCCcc----hHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC
Q 007808 478 KNVELAELALERLTELEPKNPAN----FVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL 553 (589)
Q Consensus 478 g~~~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 553 (589)
|+.+.|.+.+.......+..... +..++.++...|++++|...+++.....-. ....+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~------------------~g~~~ 728 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS------------------LRLMS 728 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------hCchH
Confidence 99999999987766533322211 457888899999999999999988532100 01223
Q ss_pred CchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 554 DRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+...++..++.+|...|+..+|.+.+..-
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45567888999999999988877766543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.3e-08 Score=86.35 Aligned_cols=111 Identities=17% Similarity=0.154 Sum_probs=100.2
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
.+-+.+.+++.+|+..|.++ .+.| |.+.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45677899999999999988 5666 566677778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 517 VARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
|++.|++.. +++|+++.....|.++..++++..
T Consensus 168 A~~aykKaL------------------------eldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKAL------------------------ELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhh------------------------ccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999885 899999999999999998888776
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.8e-08 Score=85.78 Aligned_cols=142 Identities=11% Similarity=0.054 Sum_probs=115.5
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHhcCCCHH
Q 007808 404 CACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIE-ADAVIWANLLGSCRVYKNVE 481 (589)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~ 481 (589)
..|...|+++......+.+.. |. ..+...++.++++..+++. ... .+...|..+...|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~-----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD-----PL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC-----cc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
Confidence 468888998887655433211 11 0122366677887777765 334 47788999999999999999
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHH-hhcCC--hHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHH
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIY-GDLGR--WKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSI 558 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 558 (589)
+|...|+++++++|+++..+..++.++ ...|+ .++|.+++++.. +.+|+++.+
T Consensus 91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al------------------------~~dP~~~~a 146 (198)
T PRK10370 91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL------------------------ALDANEVTA 146 (198)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH------------------------HhCCCChhH
Confidence 999999999999999999999999975 77787 599999999986 899999999
Q ss_pred HHHHHHHHHHcccCCCCcchHhhh
Q 007808 559 VRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 559 ~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+.+||.++++.|+.++|+.....+
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999887764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.3e-07 Score=92.84 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=168.5
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC--------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhH
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK--------DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGIT 398 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 398 (589)
|.+...|-..|......++.++|++++++..+. -...|.++++.....|.-+...++|+++.+. ...-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 556677888888889999999999999987632 3357888888888888888999999999984 223456
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHH
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD---AVIWANLLGSC 474 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 474 (589)
|..|...|.+.+.+++|.++++.|.++++ .....|..++..+.+..+-+.|..++.++ ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999776 66778999999999999999999999887 33443 33344445566
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCcc
Q 007808 475 RVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKK 531 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 531 (589)
.+.|+.+++..+|+..+.-.|.-...|..+++.-.+.|+.+.+..+|+++...++++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999998666654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-07 Score=91.00 Aligned_cols=188 Identities=18% Similarity=0.181 Sum_probs=130.1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 007808 326 YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA 405 (589)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 405 (589)
.+|--..-..+...+...|-...|..+|+++ ..|.-.+.+|...|+..+|..+..+..+ -+|++..|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3455555566777788888888888888864 4566777888888888888888877776 37788888888877
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 483 (589)
.....-+++|.++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777777777777655322 1111222333467777777777654 3344 455666666666777777777
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
.+.|...+.++|++.+.|+++.-.|.+.|+..+|...+++..+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 777777777777777777777777777777777777777775544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.2e-07 Score=91.39 Aligned_cols=132 Identities=12% Similarity=0.054 Sum_probs=78.4
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCM 438 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 438 (589)
++..+..|.....+.|.+++|..+++...+ +.|+. .....++..+.+.+++++|+..+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 355566666666666666666666666666 34533 3445555666666666666666666653 222234455556
Q ss_pred HHHHHhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 439 VDLLARAGRLAEAVDFVKRMP-IEAD-AVIWANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
..++.+.|++++|..+|+++. ..|+ ...+..+..++...|+.++|...|+++++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 666666666666666666662 2332 45566666666666666666666666666443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-07 Score=74.94 Aligned_cols=94 Identities=19% Similarity=0.292 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
......++..+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556777788888888888888876 3344 56667777788888888999999999888888888888888999999
Q ss_pred hcCChHHHHHHHHHhh
Q 007808 510 DLGRWKDVARIKVAMR 525 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~ 525 (589)
..|++++|...+++..
T Consensus 97 ~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 97 ALGEPESALKALDLAI 112 (135)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999888875
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=5e-07 Score=72.86 Aligned_cols=94 Identities=15% Similarity=0.088 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
....-.+...+...|++++|.++|+-+ .+.| +..-|..|..++...|++++|+..|.++..++|++|.++..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344445677788999999999999988 4566 56778888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhh
Q 007808 510 DLGRWKDVARIKVAMR 525 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~ 525 (589)
..|+.+.|.+.|+...
T Consensus 115 ~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 115 ACDNVCYAIKALKAVV 130 (157)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999999885
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.6e-06 Score=70.35 Aligned_cols=243 Identities=13% Similarity=0.076 Sum_probs=154.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
++-+.-.|.+..++..-...... +-+...-.-+.++|...|.......- +.. +-.|.......+.......++
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcch
Confidence 55667778888877665554332 23444455566667766665433221 111 113333344434443333444
Q ss_pred hHHHHH-HHhhCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHH
Q 007808 346 IENAVD-VFNSMDTK----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQ 420 (589)
Q Consensus 346 ~~~A~~-~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (589)
.++-.. +.+.+..+ +......-...|+..|++++|++.+.... +......=+..+.+..+.+-|.+.++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333332 33333322 22223333456888999999998887621 22222223344567788899999999
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 007808 421 SMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEAVDFVKRM--PIEADAVIWANLLGSCRVYKNVELAELALERLTELE 494 (589)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (589)
+|.. + .+..+.+.|..++.+ .++..+|.-+|+++ +..|+..+.+....++...|++++|+.+++.++..+
T Consensus 162 ~mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 8853 1 445566666665543 45788999999999 367888888888888999999999999999999999
Q ss_pred CCCCcchHHHHHHHhhcCChHHHH-HHHHHhh
Q 007808 495 PKNPANFVMLSNIYGDLGRWKDVA-RIKVAMR 525 (589)
Q Consensus 495 p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 525 (589)
|++|+++.+++.+-.-.|+-.++. +.+..++
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999999999988888888776654 4566665
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.9e-06 Score=85.01 Aligned_cols=240 Identities=11% Similarity=0.105 Sum_probs=128.3
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHH
Q 007808 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIV-TVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNAL 336 (589)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (589)
+...|..|+..+...+++++|.++.+...+.. |+...+. .+...+.+.++...+..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~---P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH---KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 44567777777777778888887777666643 4443322 222234444443333222 12
Q ss_pred HHHHHhcCChHHHHHHHhhCCC--CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHH
Q 007808 337 IDMYAKCGIIENAVDVFNSMDT--KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEE 414 (589)
Q Consensus 337 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 414 (589)
++......++.-...+...+.. .+...+..++.+|-+.|+.++|..+|+++.+.. +-|....+.+.-.|+.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 2222222233222222222221 122345556666666666666666666666643 22455556666666555 6666
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 415 GLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
|.+++.+++.. |...+++.++.++|+++ ...|+. ..+..+......+-...++
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~--------- 222 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL--------- 222 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh---------
Confidence 66665555421 44455566666666655 233322 2222222211111111111
Q ss_pred cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 493 LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 493 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
...+..+-..|...++|++++.+++.+. +.+|.|..+...|+.-|. +++
T Consensus 223 -----~~~~~~l~~~y~~~~~~~~~i~iLK~iL------------------------~~~~~n~~a~~~l~~~y~--~kY 271 (906)
T PRK14720 223 -----VGLLEDLYEPYKALEDWDEVIYILKKIL------------------------EHDNKNNKAREELIRFYK--EKY 271 (906)
T ss_pred -----HHHHHHHHHHHhhhhhhhHHHHHHHHHH------------------------hcCCcchhhHHHHHHHHH--HHc
Confidence 2234445567778889999999999996 788889999998988886 555
Q ss_pred CCC
Q 007808 573 NHP 575 (589)
Q Consensus 573 ~~~ 575 (589)
..+
T Consensus 272 ~~~ 274 (906)
T PRK14720 272 KDH 274 (906)
T ss_pred cCc
Confidence 553
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-07 Score=76.13 Aligned_cols=94 Identities=10% Similarity=-0.051 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+....-.+...+...|++++|+.+|+-+..++|.+...|..|+-++...|++++|+..|.+..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~----------------- 96 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA----------------- 96 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------------
Confidence 444555666778899999999999999999999999999999999999999999999999985
Q ss_pred eeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHh
Q 007808 543 VVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
.++|++|.++.++|..|..+|+.+.|..-..
T Consensus 97 -------~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 97 -------QIKIDAPQAPWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred -------hcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7999999999999999999999988766544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-06 Score=84.46 Aligned_cols=214 Identities=14% Similarity=-0.002 Sum_probs=168.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHhC
Q 007808 297 TIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD--TKDLITWNTIISGLAMH 374 (589)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~ 374 (589)
.-..+...+.+.|-...|..++++.. .+..++.+|+..|+..+|..+..+.. +|++..|..+++.....
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 33455667778888888888887664 45668889999999999988877655 46778888888888777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 007808 375 GRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDF 454 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 454 (589)
.-+++|.++.+..... .-..+.....+.++++++.+.|+...+-. +....+|-.+.-+..+.+++..|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 7888888888765432 11122222334789999999998776432 23456788888889999999999999
Q ss_pred HhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 455 VKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 455 ~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
|... ...|| ...||++-.+|.+.|+-.+|...++++++.+-.+...+.+..-+..+.|.|++|.+.+.++.+..
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8877 56775 57799999999999999999999999999888889999999999999999999999999986433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.2e-06 Score=72.09 Aligned_cols=160 Identities=19% Similarity=0.142 Sum_probs=125.3
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
|... ..+-..+...|+-+....+....... ..-|......++....+.|++..|...+.+... .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 3344 55566777788888888877775542 122444455577888888999999999988865 5677888999999
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 517 (589)
-+|.+.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|+.++.++....+.++.+..+|+.+....|++++|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 9999999999998888877 3444 5566788888888899999999999999988888889999999999999999999
Q ss_pred HHHHHH
Q 007808 518 ARIKVA 523 (589)
Q Consensus 518 ~~~~~~ 523 (589)
..+...
T Consensus 222 ~~i~~~ 227 (257)
T COG5010 222 EDIAVQ 227 (257)
T ss_pred Hhhccc
Confidence 887443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.6e-05 Score=71.17 Aligned_cols=176 Identities=15% Similarity=0.113 Sum_probs=113.2
Q ss_pred ChHHHHHHHhhCCC------CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHH
Q 007808 345 IIENAVDVFNSMDT------KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 345 ~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
++.++...-+.++. ++...+...+.+.........+..++-+..+. .-...-|..- ..+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHH
Confidence 44555555555553 24444555555444333323333332222221 1112223333 334566888888888
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 419 FQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
++.++. ..+.|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+|+..++.....+|+
T Consensus 329 l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 888765 33445666667778888888888888888887 45666 455566668888888888888888888888888
Q ss_pred CCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 497 NPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 497 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++..|..|+..|...|+-.+|.....+..
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 88888888888888888777777666553
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-06 Score=81.63 Aligned_cols=118 Identities=14% Similarity=0.035 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh
Q 007808 437 CMVDLLARAGRLAEAVDFVKRM-PIEADAVI-WANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRW 514 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 514 (589)
.....+...|.+++|+..++.+ ...|+... +......+.+.++.++|.+.+++++.++|+.+....+++++|.+.|+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence 3445566899999999999988 44565544 455558899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcch
Q 007808 515 KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTF 578 (589)
Q Consensus 515 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 578 (589)
.+|+.++++.. ..+|++|..|..|+..|.+.|+.+++...
T Consensus 391 ~eai~~L~~~~------------------------~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 391 QEAIRILNRYL------------------------FNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHHHHHh------------------------hcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 99999999885 67899999999999999999999886543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-05 Score=69.64 Aligned_cols=179 Identities=16% Similarity=0.173 Sum_probs=121.5
Q ss_pred cCChHHHHHHHhhCCC--------CCc-chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHhccCcH
Q 007808 343 CGIIENAVDVFNSMDT--------KDL-ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITF-IGILCACTHMGLV 412 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~ 412 (589)
..+.++..+++..+.. ++. ..|..++-+....|+.+-|..+++++... + |...-. ..-..-+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4567777777776651 122 23444555566778888888888888775 3 433322 2222334556888
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007808 413 EEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANLLGSCRVYKNVELAELALERL 490 (589)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 490 (589)
++|.++++.++.+ -+-|..++..-+.+.-..|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888763 2445666666666666777777777766665 35567888888888888888888888888888
Q ss_pred HccCCCCCcchHHHHHHHhhcC---ChHHHHHHHHHhh
Q 007808 491 TELEPKNPANFVMLSNIYGDLG---RWKDVARIKVAMR 525 (589)
Q Consensus 491 ~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 525 (589)
+=+.|.++..+..+++++.-.| +.+-|.++|.+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 8888888888888888876655 3555666776664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-07 Score=66.63 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=61.2
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 475 RVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
.+.|++++|++.|+++++.+|+++.++..++.+|.+.|++++|.++++++. ..+|+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~------------------------~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL------------------------KQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH------------------------GGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHCcC
Confidence 468999999999999999999999999999999999999999999999986 78899
Q ss_pred chHHHHHHHHH
Q 007808 555 RKSIVRAEANM 565 (589)
Q Consensus 555 ~~~~~~~l~~~ 565 (589)
++.++..++.+
T Consensus 58 ~~~~~~l~a~i 68 (68)
T PF14559_consen 58 NPEYQQLLAQI 68 (68)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99998888764
|
... |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.5e-05 Score=64.96 Aligned_cols=246 Identities=15% Similarity=0.083 Sum_probs=145.9
Q ss_pred cCCHHHHHHHHhhCCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHH-HHH
Q 007808 241 NGDVEECKRLFEEMPE--RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFS-KWV 317 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~ 317 (589)
.|.+..++..-..... .+...-..+.++|...|.+...+.-. . .+ -.|....+..+.......++.+.- .++
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~-~~-~~~~lqAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---K-EG-KATPLQAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---c-cc-cCChHHHHHHHHHHhhCcchhHHHHHHH
Confidence 4555555444433332 22333334455666666654433211 1 11 123333333333333333333322 334
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh
Q 007808 318 HVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI 397 (589)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 397 (589)
.+.+.......+......-...|...|++++|++...... +....-.=+..+.+..+.+-|.+.+++|.+ -.+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHH
Confidence 4444444444443444444556788888888888887733 333333334556677788888889998887 23556
Q ss_pred HHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHH
Q 007808 398 TFIGILCACTH----MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANLL 471 (589)
Q Consensus 398 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 471 (589)
|.+.|..++.+ .+.+.+|.-+|+++.. ...|+..+.+....++...|++++|..+++.+ ....++.+...++
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 77767666543 3568888999999965 46788888888888888999999999998887 3334566666666
Q ss_pred HHHhcCCC-HHHHHHHHHHHHccCCCCC
Q 007808 472 GSCRVYKN-VELAELALERLTELEPKNP 498 (589)
Q Consensus 472 ~~~~~~g~-~~~A~~~~~~~~~~~p~~~ 498 (589)
.+-...|. .+--.+...+.....|.++
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 54444554 4555667777777888755
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.2e-07 Score=55.32 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=21.6
Q ss_pred CCCCchHHHhHHHHHHHcCCChHHHHHHHccC
Q 007808 130 GFRANIFVGTALIELYSTGKAIEAAYKVFGEM 161 (589)
Q Consensus 130 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 161 (589)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-07 Score=55.67 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.8
Q ss_pred hCCCCCccchHHHHHHHHccCChhHHHHHhhcCC
Q 007808 28 SGLEKSDYITPRIITACAQLKQMTYARKMFDKIT 61 (589)
Q Consensus 28 ~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 61 (589)
.|+.||..+|+.+|++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888774
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-05 Score=83.00 Aligned_cols=220 Identities=17% Similarity=0.104 Sum_probs=169.0
Q ss_pred ChhHHHHHHHHHhcCCChHHHHHHhcccCC--------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC--CchhHHHH
Q 007808 196 DVILWNTIVSGYIDVRNMIEARKLFDQMPK--------KDVISWNTMLSGYANNGDVEECKRLFEEMPER--NVFSWNGL 265 (589)
Q Consensus 196 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l 265 (589)
+...|-..|......++.++|.++.+++++ .-...|.++++.-..-|.-+...++|+++.+- ....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456788888888888999999888888874 22356777887777778888899999998872 34568888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ-GNVCVGNALIDMYAKCG 344 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 344 (589)
...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+.++-+.|..++.++.+.-.. .........++.-.+.|
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 999999999999999999998873 456678888888889988889999999888875311 14455566677777889
Q ss_pred ChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCcHHHHHH
Q 007808 345 IIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG--ITFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 345 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 417 (589)
+.+.+..+|+.... .....|+..+..-.++|+.+.+..+|++....++.|-. +.|...+..-.+.|+-+.++.
T Consensus 1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 99999999987763 35678999999999999999999999999998887743 345555554445555444333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0014 Score=63.06 Aligned_cols=79 Identities=10% Similarity=0.110 Sum_probs=59.7
Q ss_pred CCCCccchHHHHHHHHccCChhHHHHHhhcCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHH
Q 007808 30 LEKSDYITPRIITACAQLKQMTYARKMFDKITD--Q-NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIV 106 (589)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 106 (589)
.+.|...|+.||+-+... ..+++++.++++.. | ....|..-|..-...++++....+|.+.... ..+...|..-
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 367788888888877655 88999999988876 3 4457888888888888999999999888765 3456666666
Q ss_pred HHHHh
Q 007808 107 LKSCV 111 (589)
Q Consensus 107 l~~~~ 111 (589)
+....
T Consensus 93 l~YVR 97 (656)
T KOG1914|consen 93 LSYVR 97 (656)
T ss_pred HHHHH
Confidence 65443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-06 Score=82.47 Aligned_cols=109 Identities=12% Similarity=0.080 Sum_probs=88.9
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
...+...|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 45566788888888888887 3445 456677777888888999999999999999999888889999999999999999
Q ss_pred HHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 517 VARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
|+..+++.. +++|+++.+...++.+...+.+
T Consensus 89 A~~~~~~al------------------------~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 89 AKAALEKGA------------------------SLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred HHHHHHHHH------------------------HhCCCCHHHHHHHHHHHHHHHh
Confidence 999888875 7888888888888888766643
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.7e-07 Score=63.68 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=50.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+...+.+.|++++|+..|+++++..|+++.++..++.++...|++++|+..++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999985
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.1e-06 Score=67.71 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC---CcchHHHH
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRM-PIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKN---PANFVMLS 505 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 505 (589)
++..++..+.+.|++++|.+.++++ ...|+ ...+..+..++.+.|++++|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566666777777777777666 22332 2344456677777777777777777777776664 34577777
Q ss_pred HHHhhcCChHHHHHHHHHhh
Q 007808 506 NIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 506 ~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++...|++++|.+.++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHhCChHHHHHHHHHHH
Confidence 77777777777777777775
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-05 Score=81.44 Aligned_cols=235 Identities=8% Similarity=0.019 Sum_probs=169.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007808 226 KDVISWNTMLSGYANNGDVEECKRLFEEMPE--RN-VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVL 302 (589)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 302 (589)
.+...+..|+..+...+++++|.++.+...+ |+ ...|-.+...+.+.++..++..+ .+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------
Confidence 4667889999999999999999999997765 43 34555555577788887766655 3333
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHH
Q 007808 303 SACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAG 379 (589)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 379 (589)
......++.....+...+.+. ..+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++
T Consensus 92 -~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 -SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred -hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 222333443344444445443 33455788899999999999999999999874 4778899999999999 9999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 380 ALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 380 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
|++++.+.... +...+++..+.++|.++.. ..+.+...+..+.+..... .+
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~ 218 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------RE 218 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hc
Confidence 99999988764 5566789999999999975 2222333333233222221 11
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 460 IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 460 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
..--..++.-+...|...++++++..+++.+++.+|.|..+...++.+|..
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 122334455566778889999999999999999999999999999999873
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-05 Score=66.81 Aligned_cols=174 Identities=14% Similarity=0.108 Sum_probs=129.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchH---HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMDTKDLITW---NTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACT 407 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 407 (589)
.+|..++-+....|+.+.|...++.+...=+.++ ..-...+-..|++++|+++++.+.+.+ +.|..++.-=+...-
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 3566677777889999999999998764222222 222233556799999999999999865 446677776666666
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHh---cCCCHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCR---VYKNVEL 482 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~---~~g~~~~ 482 (589)
..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++ -+.| ++..+..+...+. ...+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888899988888876 56788999999999999999999999999998 3556 5555556665543 3347889
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHH
Q 007808 483 AELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
|.++|.+++++.|.+...+..+--+
T Consensus 210 arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHHHHHhChHhHHHHHHHHHH
Confidence 9999999999999655555444333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.3e-06 Score=78.82 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=99.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhc
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRV 476 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 476 (589)
...|+..+...++++.|..+++++.+. .|+. ...++..+...++-.+|++++.+. ...| +...+......|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666677778899999999888643 3554 445778888888888898888877 3344 55666666677899
Q ss_pred CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 477 YKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++++.|+++.+++.++.|++..+|..|+.+|...|++++|+..+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988875
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-05 Score=65.81 Aligned_cols=113 Identities=15% Similarity=0.072 Sum_probs=87.2
Q ss_pred HHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 007808 383 LFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI 460 (589)
Q Consensus 383 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 460 (589)
.|++... ..| +......+...+...|++++|.+.++.+... .+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 345 3345666777788889999999999888652 2346777888889999999999999988887 33
Q ss_pred CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 461 EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 461 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
.| +...+..+...+...|++++|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5667777778889999999999999999999998664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.5e-06 Score=70.17 Aligned_cols=82 Identities=22% Similarity=0.155 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
...+..+...|...|++++|...|+++ ...|+ ...+..+...+.+.|++++|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345666777777888888888888776 22222 3567777788899999999999999999999998888999999
Q ss_pred HHhhcCC
Q 007808 507 IYGDLGR 513 (589)
Q Consensus 507 ~~~~~g~ 513 (589)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988776
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0079 Score=61.74 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=52.2
Q ss_pred ccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 007808 46 QLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEEL 122 (589)
Q Consensus 46 ~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 122 (589)
|.|+.++|..+++.... .|..+...+-..|...|+.++|..+|++..+. -|+......+..++.|.+++.+-.++
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666655432 24445555666666666666666666666543 35555555566666666655544333
Q ss_pred HHHHHHhCCCCchHHHhHHHHHHH
Q 007808 123 HCLVLKNGFRANIFVGTALIELYS 146 (589)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~li~~~~ 146 (589)
--++.+. .+.+.+.+=++++.+.
T Consensus 133 a~~LyK~-~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 133 ALQLYKN-FPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHh-CCcccchHHHHHHHHH
Confidence 3333332 2334444444444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.1e-06 Score=66.41 Aligned_cols=98 Identities=11% Similarity=0.083 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeC
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN 541 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 541 (589)
.++..++..+.+.|++++|...++++++..|+++ .++..++.++.+.|++++|...++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------- 66 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV---------------- 66 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH----------------
Confidence 3456677788899999999999999999988763 578889999999999999999999986
Q ss_pred CeeeeeccccCCC---chHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 542 EVVMLGCLSRELD---RKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 542 ~~~~~~~~~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
..+|+ .+.++..+++++..+|+.++|+..+.-+...+
T Consensus 67 --------~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 67 --------KKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred --------HHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 44555 47789999999999999999998887765544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.2e-05 Score=73.29 Aligned_cols=128 Identities=11% Similarity=0.102 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMG 410 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 410 (589)
.....|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++++..... +-+......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445566677778889999999999988888888888888888888889999999988642 335555666667788899
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007808 411 LVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRMPIEA 462 (589)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 462 (589)
+++.|+.+.+++.. ..|+ ..+|..|+.+|.+.|++++|+-.++.++..|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999998874 3455 5689999999999999999999999886433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-06 Score=61.50 Aligned_cols=63 Identities=24% Similarity=0.240 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC-ChHHHHHHHHHhh
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG-RWKDVARIKVAMR 525 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~ 525 (589)
+...|..+...+...|++++|+..|+++++++|+++.++..++.+|.+.| ++++|++.+++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 45678888899999999999999999999999999999999999999999 7999999999885
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.3e-05 Score=69.09 Aligned_cols=155 Identities=11% Similarity=0.023 Sum_probs=111.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH-------------
Q 007808 369 SGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEH------------- 434 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------- 434 (589)
.++.-.|++++|...--...+. .+ +......-..++.-.++.+.|...|++.+ .+.|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHH
Confidence 3456678888888776666653 22 22222222223445678888888888776 44455322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRM-PIEA-----DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
+..=.+-..+.|++.+|.+.|.+. .+.| +...|........+.|+.++|+.-.+++++++|.-..+|..-++++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 112234456899999999999887 4455 4555666667778999999999999999999999888999999999
Q ss_pred hhcCChHHHHHHHHHhhhCC
Q 007808 509 GDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~~~~ 528 (589)
...++|++|.+.+++..+..
T Consensus 332 l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999986433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.4e-06 Score=59.38 Aligned_cols=69 Identities=20% Similarity=0.157 Sum_probs=61.3
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeecccc
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSR 551 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (589)
..|.+.+++++|.+.++++++++|+++..+...+.++.+.|++++|.+.+++.. +.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l------------------------~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL------------------------EL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH------------------------HH
Confidence 567889999999999999999999999999999999999999999999999986 67
Q ss_pred CCCchHHHHHHHH
Q 007808 552 ELDRKSIVRAEAN 564 (589)
Q Consensus 552 ~p~~~~~~~~l~~ 564 (589)
.|+++.+....+.
T Consensus 59 ~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 59 SPDDPDARALRAM 71 (73)
T ss_pred CCCcHHHHHHHHh
Confidence 7887777655543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.9e-05 Score=63.57 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=50.5
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCCH----HHHHHHHHHHhcCCCHHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP-IEADA----VIWANLLGSCRVYKNVEL 482 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~ 482 (589)
.++...+...++.+..+++-.| .....-.+...+...|++++|...|+.+. ..|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4445555555555543321110 01222233444555555555555555541 11222 122223344555555555
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 483 AELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
|+..++... -.+-.+..+..++++|.+.|++++|...|++
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555554422 1222244555555556666666665555554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0068 Score=58.60 Aligned_cols=203 Identities=12% Similarity=0.058 Sum_probs=127.9
Q ss_pred hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhhCCC----CCcchHHHHHHHHHhCCChHHHHHH
Q 007808 311 LDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCG---IIENAVDVFNSMDT----KDLITWNTIISGLAMHGRGAGALSL 383 (589)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~ 383 (589)
.+++..+++..+..-..-+..+|..+.+.--..- ..+.....++++.. .-..+|-.+++.-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455566666555433334444544443221111 23444444444432 2334677777777777778888889
Q ss_pred HHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC---
Q 007808 384 FHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP--- 459 (589)
Q Consensus 384 ~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 459 (589)
|.+..+.+..+ +....++++..++. ++.+-|.++|+.-.+++| .++.--...++.+...++-..|..+|++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99988877777 56667777776654 788888899887776554 333344567777888888888888888872
Q ss_pred CCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC----CcchHHHHHHHhhcCChHH
Q 007808 460 IEA--DAVIWANLLGSCRVYKNVELAELALERLTELEPKN----PANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 460 ~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~ 516 (589)
+.| ....|..++.-=..-|+...+.++-++....-|.+ ...-..+++.|.-.+.+.-
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 333 34778888877788888888888887777655521 1233344555655555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.011 Score=60.76 Aligned_cols=67 Identities=19% Similarity=0.166 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCCH---HHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccC
Q 007808 466 IWANLLGSCRVYKNV---ELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 532 (589)
+.+.++..+.+.++. -+|+-+++..+..+|.|+.+-..|+++|.-.|-+..|.+.|+.+--+.|..|
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 345666778777764 5778888999999999999999999999999999999999999965555544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.7e-06 Score=63.96 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHhhC-CCCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHH
Q 007808 445 AGRLAEAVDFVKRM-PIEA---DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 445 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666655 1222 333444455666666666666666666 555555555666666666666666666666
Q ss_pred HHH
Q 007808 521 KVA 523 (589)
Q Consensus 521 ~~~ 523 (589)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00019 Score=59.37 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=81.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPD---GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ--IEHYGCM 438 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l 438 (589)
|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+... .-.|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33344444 3677788887888887752 222 223444556777888888888888888654 21122 1234456
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 439 VDLLARAGRLAEAVDFVKRMPIE-ADAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
...+...|++++|+..++..... .....+......+...|++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77788888888888888776322 234455556678888888888888888763
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.3e-06 Score=78.86 Aligned_cols=89 Identities=10% Similarity=0.005 Sum_probs=82.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccc
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLS 550 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (589)
...+...|++++|++.|+++++++|+++.+|..++.+|.+.|++++|+..++++. +
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al------------------------~ 64 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI------------------------E 64 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------H
Confidence 4566788999999999999999999999999999999999999999999999986 7
Q ss_pred cCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 551 RELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 551 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
++|+++.++..+|.+|..+|+.++|+..+....
T Consensus 65 l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 65 LDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred hCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 899999999999999999999999988876543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.5e-07 Score=65.83 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHccCCC--CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 477 YKNVELAELALERLTELEPK--NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
.|+++.|+.+++++++..|. +...+..++.+|.+.|++++|+.++++. +.+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-------------------------~~~~~ 56 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-------------------------KLDPS 56 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-------------------------THHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-------------------------CCCCC
Confidence 68999999999999999985 4567777899999999999999999883 57788
Q ss_pred chHHHHHHHHHHHHcccCCCCcchHh
Q 007808 555 RKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
++.....+|..+.++|+.++|+..+.
T Consensus 57 ~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 57 NPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 89999999999999999999988764
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.6e-05 Score=59.26 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
+..++..+...|++++|...++++ ...| +...+..+...+...|++++|.+.++++....|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778888888888888876 3344 34566667778888899999999999999988888888889999999999
Q ss_pred ChHHHHHHHHHhh
Q 007808 513 RWKDVARIKVAMR 525 (589)
Q Consensus 513 ~~~~A~~~~~~~~ 525 (589)
++++|...+++..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999888875
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=69.15 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=47.8
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~ 484 (589)
+.+++.+|+..|.+++. +.| |+..|..-..+|.+.|.++.|++-.+.. .++|. ..+|..|..+|...|++++|+
T Consensus 93 ~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 44555555555555542 222 3444444455555555555555544444 34442 344555555555555555555
Q ss_pred HHHHHHHccCCCCCcchHHHH
Q 007808 485 LALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~ 505 (589)
+.|+++++++|++......|-
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHH
Confidence 555555555555554333333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0063 Score=57.17 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=68.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHH
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVE 413 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 413 (589)
+..+.-+...|+...|.++-.+..-|+...|...+.+|+..++|++-..+-.. .-++.-|...+.+|.+.|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556667777777777777777777777777777777777765554321 113356777777777777777
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 414 EGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
+|..++.++ ++ ..-+..|.++|++.+|.+.--+.
T Consensus 255 eA~~yI~k~-------~~----~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPKI-------PD----EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHhC-------Ch----HHHHHHHHHCCCHHHHHHHHHHc
Confidence 777776653 11 23456677777777776654444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.3e-05 Score=64.20 Aligned_cols=94 Identities=16% Similarity=-0.037 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 505 (589)
....|..++..+...|++++|+..+++. ...|+ ..++..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677788888889999999988887 23332 347788889999999999999999999999999888899999
Q ss_pred HHHh-------hcCChHHHHHHHHHh
Q 007808 506 NIYG-------DLGRWKDVARIKVAM 524 (589)
Q Consensus 506 ~~~~-------~~g~~~~A~~~~~~~ 524 (589)
.++. +.|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9988 888888776666654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.2e-06 Score=48.45 Aligned_cols=34 Identities=18% Similarity=0.390 Sum_probs=26.0
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCc
Q 007808 67 SWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNC 100 (589)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 100 (589)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6777777777777777777777777777777763
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=61.12 Aligned_cols=93 Identities=16% Similarity=0.097 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeee
Q 007808 467 WANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVML 546 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (589)
+..+...+...|++++|...++++++..|.++..+..++.++...|++++|.+.+++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------------- 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL--------------------- 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 45566778889999999999999999999988899999999999999999999999885
Q ss_pred eccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 547 GCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 547 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
+..|.++.++..++.++...|+.++|...+..+.
T Consensus 62 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 62 ---ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred ---hCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5678888999999999999999888877765543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.04 E-value=1e-05 Score=48.01 Aligned_cols=34 Identities=50% Similarity=0.764 Sum_probs=30.1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD 395 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~ 395 (589)
.+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688999999999999999999999999998887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00044 Score=56.78 Aligned_cols=149 Identities=14% Similarity=0.071 Sum_probs=114.4
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
..+.=+++....-..+-.+ ..|....-..|..+..+.|+..+|...|++.... -+-.|......+.++....+++..
T Consensus 66 ~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 66 LQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHH
Confidence 3333444444433333333 4677777778899999999999999999998652 345667788888999999999999
Q ss_pred HHHHHhhC-C-----CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 451 AVDFVKRM-P-----IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 451 A~~~~~~~-~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
|...++++ . ..||. ...+...+...|.++.|+..|+.++..-|+ +......+..+.++|+.++|..-+..+
T Consensus 143 a~~tLe~l~e~~pa~r~pd~--~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPDG--HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHhhcCCccCCCCc--hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99999987 2 33443 344668899999999999999999999998 888899999999999988887765555
Q ss_pred h
Q 007808 525 R 525 (589)
Q Consensus 525 ~ 525 (589)
.
T Consensus 220 ~ 220 (251)
T COG4700 220 V 220 (251)
T ss_pred H
Confidence 3
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00023 Score=71.64 Aligned_cols=62 Identities=21% Similarity=0.142 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+...+..+.......|++++|...++++++++|+ ...|..++.++...|+.++|.+.+++..
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555554445567777777777777777774 6677777777777777777777777764
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-05 Score=47.47 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCC
Q 007808 66 VSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMP 98 (589)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 98 (589)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777776665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00043 Score=69.73 Aligned_cols=139 Identities=13% Similarity=0.024 Sum_probs=97.2
Q ss_pred CCcchHHHHHHHHHh--CC---ChHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcc--------CcHHHHHHHHHHhHH
Q 007808 359 KDLITWNTIISGLAM--HG---RGAGALSLFHEMKNAGEMPDG-ITFIGILCACTHM--------GLVEEGLSYFQSMAM 424 (589)
Q Consensus 359 ~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 424 (589)
.+...|...+.+... .+ +...|..+|++..+ ..|+. ..+..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 456667666666432 22 36688889999888 46753 3444443333221 123444444444322
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 425 DYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
......+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.|++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1123345677888877777889999999999998 57788888988999999999999999999999999999774
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.1e-05 Score=46.30 Aligned_cols=33 Identities=39% Similarity=0.596 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP 394 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 394 (589)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00058 Score=63.40 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=91.3
Q ss_pred HhccCcHHHHHHHHHHhHHh--cCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMD--YSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVE 481 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~ 481 (589)
..+.|++..|.+.|.+.+.- ....|+...|........+.|+..+|+.--+.. .++|.. ..+..-..++...++++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888777621 122334566777777788899999998877776 333321 12222225567788999
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccce----eeeCCeeeeeccccCCCchH
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSS----IEVNEVVMLGCLSRELDRKS 557 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~ 557 (589)
+|.+.|+++.+...+ ......|.++ ..-+++.++.+.-...|++. .+.++.....++..||+...
T Consensus 339 ~AV~d~~~a~q~~~s-~e~r~~l~~A----------~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~a 407 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD-CEIRRTLREA----------QLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNA 407 (486)
T ss_pred HHHHHHHHHHhhccc-cchHHHHHHH----------HHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCc
Confidence 999999999987765 4444444433 22223222222222223321 22333333336666776544
Q ss_pred HH--------HHHHHHHHHcccCCCCcc
Q 007808 558 IV--------RAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 558 ~~--------~~l~~~~~~~~~~~~~~~ 577 (589)
-- ...|+.|..+++..+..+
T Consensus 408 gsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 408 GSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 33 346666766666655444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00035 Score=59.87 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=77.6
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD--GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
..+..+...+...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|...+++.... .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 4566666667777777777777777765432222 245666666777777777777777766542 122344555556
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 440 DLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
.+|...|+...+..-++.. ...+++|.++++++++.+|++ +..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666666655544322221 112678888999999888885 4455555544443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00019 Score=58.50 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=76.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK 515 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 515 (589)
...-+...|++++|..+|.-+ ...| +..-|..|..++...+++++|+..|..+..++++||..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344556899999999999877 2333 56667888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 007808 516 DVARIKVAMR 525 (589)
Q Consensus 516 ~A~~~~~~~~ 525 (589)
.|...|+...
T Consensus 123 ~A~~~f~~a~ 132 (165)
T PRK15331 123 KARQCFELVN 132 (165)
T ss_pred HHHHHHHHHH
Confidence 9999999885
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00016 Score=64.71 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=86.5
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHh---cCCCHHHHHHHHHHHHccCCCCCcchHH
Q 007808 429 VPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCR---VYKNVELAELALERLTELEPKNPANFVM 503 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 503 (589)
+-|...|-.|..+|...|+++.|...|.+. .+.| +...+..+..++. ......++..+++++++.+|.|+.+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 457899999999999999999999999988 3444 5566666665543 2335788999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 504 LSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 504 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
|+..+...|++.+|...++.|.+..-..+|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999755443333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.8e-05 Score=52.84 Aligned_cols=61 Identities=23% Similarity=0.267 Sum_probs=48.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
+...+.+.|++++|++.|+++ ...| +...+..+..++...|++++|...|+++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788889999999998887 4456 456677777888899999999999999999998864
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.5e-05 Score=63.12 Aligned_cols=91 Identities=10% Similarity=-0.093 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC---CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeee
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELEPKN---PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEV 540 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 540 (589)
...+..+...+...|++++|+..|++++.+.|++ +.++..++.+|...|++++|+..+++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al--------------- 99 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL--------------- 99 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------
Confidence 4556667778889999999999999999987763 3489999999999999999999999985
Q ss_pred CCeeeeeccccCCCchHHHHHHHHHHH-------HcccCCCCcch
Q 007808 541 NEVVMLGCLSRELDRKSIVRAEANMIK-------LLPQNNHPLTF 578 (589)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~~l~~~~~-------~~~~~~~~~~~ 578 (589)
+++|+.+..+..++.+|. ++|+..+|+..
T Consensus 100 ---------~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 100 ---------ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred ---------HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHH
Confidence 678888999999999998 55565444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.6e-05 Score=67.18 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC---CcchHHH
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA----VIWANLLGSCRVYKNVELAELALERLTELEPKN---PANFVML 504 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l 504 (589)
..|......+.+.|++++|+..|+.. ...|+. ..+..+..+|...|++++|...|+++++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555455556678888888888776 233432 345556677888888888888888888777664 4556666
Q ss_pred HHHHhhcCChHHHHHHHHHhh
Q 007808 505 SNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.++...|++++|.+.++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 777888888888888888875
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=67.83 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=86.4
Q ss_pred HHHHhcCCHHHHHHHHhhCC--------CC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 440 DLLARAGRLAEAVDFVKRMP--------IE---------ADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~~--------~~---------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
+.|.+.|++..|..-|+++. .+ .-..++..+..++.+.+++.+|++...++++++|+|.-+++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 45556666666666555531 11 12345667778889999999999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 503 MLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 503 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
.-+.+|...|+++.|+..|+++. +++|+|..+...|..+..+..+..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~------------------------k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKAL------------------------KLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH------------------------HhCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999996 789999999988887766555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.015 Score=54.28 Aligned_cols=96 Identities=13% Similarity=0.101 Sum_probs=59.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----Hh-HHHHHHHHHhccCcHHHHHHHHHHhHHhc-CCCCC--hHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-----GI-TFIGILCACTHMGLVEEGLSYFQSMAMDY-SIVPQ--IEH 434 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~--~~~ 434 (589)
+..+...+.+.|++++|+++|++........+ .. .|...+-++...|++..|.+.+++..... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 44567778888899999999988876433221 11 23334445666788889988888875321 22222 344
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHhhCC
Q 007808 435 YGCMVDLLAR--AGRLAEAVDFVKRMP 459 (589)
Q Consensus 435 ~~~l~~~~~~--~g~~~~A~~~~~~~~ 459 (589)
...|+.++-. ...+++|+.-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 5566777754 346777888888774
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00027 Score=65.39 Aligned_cols=256 Identities=14% Similarity=0.078 Sum_probs=151.3
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHH--H--cCCC-CChhHHHHHHH
Q 007808 268 GYANNGLFFEVLDAFKRMLTEGRVFPND----ATIVTVLSACARLGALDFSKWVHVYAE--Y--NGYQ-GNVCVGNALID 338 (589)
Q Consensus 268 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~ 338 (589)
-+|+.|+....+.+|+..++-| .-|. .+|..+.++|...+++++|.+++..=+ . .|-. ........|..
T Consensus 26 RLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3667777777777777777765 2232 235555566666667777766543211 0 1100 01112222344
Q ss_pred HHHhcCChHHHHHHHhhCC-------CC--CcchHHHHHHHHHhCCC--------------------hHHHHHHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMD-------TK--DLITWNTIISGLAMHGR--------------------GAGALSLFHEMKN 389 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m~~ 389 (589)
.+--.|.+++|.-.-.+-. .+ ....+..+...|...|+ ++.|.++|.+-.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4444555665554332211 00 12234444555543331 2334444443221
Q ss_pred ----CCCC-CCHhHHHHHHHHHhccCcHHHHHHHHHHh---HHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC--
Q 007808 390 ----AGEM-PDGITFIGILCACTHMGLVEEGLSYFQSM---AMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-- 458 (589)
Q Consensus 390 ----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 458 (589)
.|-. .-...|..|...|.-.|+++.|+...+.- .+++|-... ...+..+.+++.-.|+++.|.+.|+..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1111 11235677777777789999998876542 234443332 457788999999999999999998864
Q ss_pred -----C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC------CCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 459 -----P-IEADAVIWANLLGSCRVYKNVELAELALERLTELE------PKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 459 -----~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+ ......+..+|.+.|.-..++++|+.++.+=+.+. .....++.+|+..+...|..++|+.+.+.-.
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1 12234556677788888889999999887766532 2235688899999999999999999877664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00033 Score=63.77 Aligned_cols=103 Identities=9% Similarity=0.040 Sum_probs=78.8
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHH
Q 007808 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD----AVIWANL 470 (589)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l 470 (589)
..|...+....+.|++++|...|+.+++.+.-.+- ...+-.++.+|...|++++|...|+++ ...|+ ...+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34655555556779999999999999876422211 346677899999999999999999988 22332 4455556
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
...+...|+.++|...|+++++..|++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 67788999999999999999999998553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0046 Score=57.75 Aligned_cols=127 Identities=19% Similarity=0.213 Sum_probs=76.7
Q ss_pred HHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC---C-----CCCHH
Q 007808 399 FIGILCACTHM-GLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP---I-----EADAV 465 (589)
Q Consensus 399 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~~ 465 (589)
+..+...|... |++++|.+.|+++..-+..... ...+..++..+.+.|++++|.++|++.. . +.+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 33444556666 7888888888777553222222 3355667788899999999999998762 1 11121
Q ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc-----chHHHHHHHhh--cCChHHHHHHHHHhh
Q 007808 466 -IWANLLGSCRVYKNVELAELALERLTELEPKNPA-----NFVMLSNIYGD--LGRWKDVARIKVAMR 525 (589)
Q Consensus 466 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~ 525 (589)
.+...+-++...||...|.+.+++....+|.-.. ....|+.++.. ...+++|+.-|+.+.
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2223334556788999999999999988875332 34445555544 345777777776653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=1.7e-05 Score=46.22 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=31.5
Q ss_pred HHHHHHccCCCCCcchHHHHHHHhhcCChHHHHH
Q 007808 486 ALERLTELEPKNPANFVMLSNIYGDLGRWKDVAR 519 (589)
Q Consensus 486 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 519 (589)
.|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.044 Score=51.00 Aligned_cols=277 Identities=16% Similarity=0.153 Sum_probs=169.0
Q ss_pred cCCHHHHHHHHhhCCC---CCchhHHHHHHH--HHhCCChHHHHHHHHHHHHcCCCCCcHH--HHHHHHHHHHhcCChhH
Q 007808 241 NGDVEECKRLFEEMPE---RNVFSWNGLIGG--YANNGLFFEVLDAFKRMLTEGRVFPNDA--TIVTVLSACARLGALDF 313 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~ 313 (589)
.|+-..|.++-.+..+ .|....-.++.+ -.-.|+++.|.+-|+.|... |... -+..+.-...+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHH
Confidence 3455555555444331 333333333332 23357777777777777652 2221 23333333456667777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-----CCCcc--hHHHHHHHHH---hCCChHHHHHH
Q 007808 314 SKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD-----TKDLI--TWNTIISGLA---MHGRGAGALSL 383 (589)
Q Consensus 314 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~ 383 (589)
|.++-+.....- +.-.....+++...+..|+|+.|+++.+.-. ++++. .--.|+.+-. -..+...|.+.
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 766666655443 3334556667777777777877777776543 23332 1112222211 12356666666
Q ss_pred HHHHHHCCCCCCHhH-HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC----
Q 007808 384 FHEMKNAGEMPDGIT-FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM---- 458 (589)
Q Consensus 384 ~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 458 (589)
-.+..+ +.||..- -..-..++.+.|+..++-.+++.+-+ ..|.+.++.. ..+.+.|+.. +.-+++.
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~l--Y~~ar~gdta--~dRlkRa~~L~ 322 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALL--YVRARSGDTA--LDRLKRAKKLE 322 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHH--HHHhcCCCcH--HHHHHHHHHHH
Confidence 666555 5776543 33445678899999999999998863 4577766643 3344566543 2222222
Q ss_pred CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhc-CChHHHHHHHHHhhhCCCccC
Q 007808 459 PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDL-GRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 459 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 532 (589)
..+| +......+..+-...|++..|..--+.+....|. ..+|..|+++-... |+-.++...+-+..+.+-.|.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 2345 4455566667788999999999999999999998 77899999997765 999999999888876654443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.048 Score=51.32 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHH
Q 007808 200 WNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVL 279 (589)
Q Consensus 200 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 279 (589)
.+..+.-+...|+...|.++-.+..=|+...|-..+.+++..++|++..++-.. +.++..|..++..|.+.|+..+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHH
Confidence 344455556666666676666666556666777777777777777766665443 345566666777777777777766
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 007808 280 DAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWV 317 (589)
Q Consensus 280 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 317 (589)
.+...+ ++ ..-+..|.+.|++.+|.+.
T Consensus 258 ~yI~k~-------~~----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 258 KYIPKI-------PD----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHhC-------Ch----HHHHHHHHHCCCHHHHHHH
Confidence 666552 11 2234455556666555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0024 Score=57.78 Aligned_cols=195 Identities=12% Similarity=0.065 Sum_probs=108.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hH---HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-IT---FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHY 435 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 435 (589)
+...+-.....+...|++++|.+.|+++... .|+. .. ...++.++.+.+++++|...+++.++.++-.|+.. +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~-~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID-Y 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH-H
Confidence 3444444556667788888888888888874 3432 22 23456677888888888888888877655555542 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CC---CCCH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRM-PI---EADA-------VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML 504 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 504 (589)
.....+++... .....+... .+ ..|. ..+..++.-|=.+.-..+|...+..+...- ...-...
T Consensus 108 a~Y~~g~~~~~---~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l---a~~e~~i 181 (243)
T PRK10866 108 VLYMRGLTNMA---LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL---AKYELSV 181 (243)
T ss_pred HHHHHHHhhhh---cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH---HHHHHHH
Confidence 11222211100 000011111 00 0010 112222222222222333332222222110 1222366
Q ss_pred HHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhh
Q 007808 505 SNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFS 584 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 584 (589)
+..|.+.|+|.-|+.-++.+.+.= ..-|..++++..+...|..+|..++|.+...+|..
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Y---------------------p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDY---------------------PDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHC---------------------CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 778999999999999888885211 13356778888899999999999999998888754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0032 Score=51.89 Aligned_cols=102 Identities=21% Similarity=0.308 Sum_probs=89.0
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC--CC
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM---PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPK--NP 498 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~ 498 (589)
++..+-|+...--.|..++...|+..+|...|++. ...-|......+.++....++...|...++.+.+-+|. .|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 33355688888888999999999999999999987 35558888888889999999999999999999998875 57
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.....+++.|...|++++|+..++...
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHH
Confidence 788889999999999999999999885
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=7.9e-05 Score=42.61 Aligned_cols=31 Identities=39% Similarity=0.657 Sum_probs=23.8
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGE 392 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 392 (589)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00019 Score=64.28 Aligned_cols=98 Identities=12% Similarity=-0.033 Sum_probs=87.0
Q ss_pred CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC---ChHHHHHHHHHhhhCCCccCCccc
Q 007808 461 EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG---RWKDVARIKVAMRDTGFKKLPGCS 536 (589)
Q Consensus 461 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 536 (589)
+| |...|..|...|...|+...|...|.++.++.|+|+..+..++.++..+. ...++..+++++.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al----------- 220 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL----------- 220 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH-----------
Confidence 44 78899999999999999999999999999999999999999999977654 4678888999986
Q ss_pred eeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 537 SIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 537 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
.++|+|..+...|+-.+++-|+..+|+..-..+
T Consensus 221 -------------~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~l 253 (287)
T COG4235 221 -------------ALDPANIRALSLLAFAAFEQGDYAEAAAAWQML 253 (287)
T ss_pred -------------hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 899999999999999999999999877655443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00042 Score=52.00 Aligned_cols=80 Identities=19% Similarity=0.120 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchHHH
Q 007808 68 WNAMFNGYAQNEFHRTVVVLFTQMKKLDA-MPNCFTFPIVLKSCVKIN--------ALREGEELHCLVLKNGFRANIFVG 138 (589)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 138 (589)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-....+|+.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 899999999999987653 234577899999999999999999
Q ss_pred hHHHHHHHc
Q 007808 139 TALIELYST 147 (589)
Q Consensus 139 ~~li~~~~~ 147 (589)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.1 Score=52.44 Aligned_cols=199 Identities=16% Similarity=0.137 Sum_probs=130.8
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHHh-CCCC--------chHHHhHHHHHHHcCCChHHHHHHHccCCCCCee
Q 007808 97 MPNCFTFPIVLKSCVKINALREGEELHCLVLKN-GFRA--------NIFVGTALIELYSTGKAIEAAYKVFGEMDERNVV 167 (589)
Q Consensus 97 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (589)
.|.+..|..+.......-+++.|+..|-+...- |++. +...-.+=+. +-.|++++|++++-++..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 588888988888777777777777776544221 1111 1111111222 225899999999988887765
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhCCCC--C---hhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcC
Q 007808 168 VWTSMINGYISCGDIVSARCLFELAPER--D---VILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNG 242 (589)
Q Consensus 168 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 242 (589)
.|..+.+.|++-...++++..... | ...|+.+...++....|++|.+.+..-.. ....+.++.+..
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~le 836 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYRLE 836 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHHHH
Confidence 467788889999999999876543 1 25788899999999999999998876432 234566777777
Q ss_pred CHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 007808 243 DVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVH 318 (589)
Q Consensus 243 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (589)
++++.+.+-..+++ +......+...+...|..++|.+.|-+- + .|. ..+..|...+++.+|.++-
T Consensus 837 ~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s--~pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 837 LFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S--LPK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c--CcH-----HHHHHHHHHHHHHHHHHHH
Confidence 77777777666665 3444556777788888888887765432 2 232 2344555666666665543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.4e-05 Score=42.28 Aligned_cols=29 Identities=17% Similarity=0.493 Sum_probs=18.8
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhhCC
Q 007808 67 SWNAMFNGYAQNEFHRTVVVLFTQMKKLD 95 (589)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 95 (589)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=9.1e-05 Score=68.36 Aligned_cols=260 Identities=15% Similarity=0.094 Sum_probs=162.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCChHHHHHHHhhCC-------CC--CcchHHHHHHH
Q 007808 303 SACARLGALDFSKWVHVYAEYNGYQ---GNVCVGNALIDMYAKCGIIENAVDVFNSMD-------TK--DLITWNTIISG 370 (589)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~ 370 (589)
.-+|+.|+......+|+.+++.|.. .-..+|..|..+|.-.+++++|++.-..-. .+ ...+...|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3478999999999999999998743 224567778888888899999988653211 11 11223334455
Q ss_pred HHhCCChHHHHHHHHHH----HHCCCCC-CHhHHHHHHHHHhccCc--------------------HHHHHHHHHHhHH-
Q 007808 371 LAMHGRGAGALSLFHEM----KNAGEMP-DGITFIGILCACTHMGL--------------------VEEGLSYFQSMAM- 424 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m----~~~~~~p-~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~- 424 (589)
+--.|.+++|+-.-.+- .+.|-.. ....+..+...|...|+ ++.|.++|.+-++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 55667777776544332 2222111 22344456666654443 4455555544221
Q ss_pred --hcCCC-CChHHHHHHHHHHHhcCCHHHHHHHHhhC-------CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc-
Q 007808 425 --DYSIV-PQIEHYGCMVDLLARAGRLAEAVDFVKRM-------PI-EADAVIWANLLGSCRVYKNVELAELALERLTE- 492 (589)
Q Consensus 425 --~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 492 (589)
+.|-. ..-..|..|.+.|.-.|+++.|+.+-+.- +. ......+..+.+++.-.|+++.|.+.|++.+.
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11111 11245667777888889999998765432 21 12345677788888899999999999998765
Q ss_pred ---cCCC--CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 493 ---LEPK--NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 493 ---~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
+... ....-++|++.|.-..++++|+.++.+=..-.-+ ++-.-...-++-+||+.|.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe------------------L~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE------------------LEDRIGELRACWSLGNAFN 326 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhhhHHHHHHHHHHHH
Confidence 3322 2445678999999999999999988765311100 0112234556777888888
Q ss_pred HcccCCCCcchHh
Q 007808 568 LLPQNNHPLTFIV 580 (589)
Q Consensus 568 ~~~~~~~~~~~~~ 580 (589)
.+|.+..|+.|..
T Consensus 327 alg~h~kAl~fae 339 (639)
T KOG1130|consen 327 ALGEHRKALYFAE 339 (639)
T ss_pred hhhhHHHHHHHHH
Confidence 8888877776654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.11 Score=52.83 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHH
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVE 413 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 413 (589)
+-.+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+. ++.-|.....+|.+.|+.+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence 3334444555666666666666666666666666666666666665444433221 1344555666666666666
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 007808 414 EGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDF 454 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 454 (589)
+|.+++-+.. +.. -.+.+|.+.|++.+|.+.
T Consensus 762 EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 762 EAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHhhhhhccC---ChH-------HHHHHHHHhccHHHHHHH
Confidence 6666655442 111 244566666666666554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.08 Score=50.44 Aligned_cols=189 Identities=13% Similarity=0.089 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC--CCCcch-------HHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHh
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMD--TKDLIT-------WNTIISGLAM----HGRGAGALSLFHEMKNAGEMPDGI 397 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-------~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~ 397 (589)
.++..++....+.++...|...+.-+. +|+... -..+-+..+. .-+...=+.+|+.....+ .|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHH
Confidence 345556666666677666666655443 232211 1112222221 112233455555555532 2322
Q ss_pred H-HHHHH---HHHhccCc-HHHHHHHHHHhHHhcCCCCChHHHHHHH----HHHHhc---CCHH---HHHHHHhhCCCCC
Q 007808 398 T-FIGIL---CACTHMGL-VEEGLSYFQSMAMDYSIVPQIEHYGCMV----DLLARA---GRLA---EAVDFVKRMPIEA 462 (589)
Q Consensus 398 ~-~~~l~---~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p 462 (589)
- ...|+ .-+-+.|. -++|+.+++.+.+-. +-|...-|.+. ..|.++ ..+. +-..++++.++.|
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft--~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT--NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1 12222 22344454 788888888776421 22333333221 222221 1111 2234455556555
Q ss_pred ----CHHHHHHHHHH--HhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 463 ----DAVIWANLLGS--CRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 463 ----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+...-|.+..+ +..+|++.++.-.-.-+.++.| ++.+|..+|-++....++++|..++.++
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 33444555544 5789999999999999999999 5999999999999999999999999887
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00018 Score=50.66 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCC
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYK-NVELAELALERLTELEP 495 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 495 (589)
++..|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566778888888888888888888887 4455 4566777778888888 68999999999998887
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00015 Score=45.45 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=39.1
Q ss_pred CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHH
Q 007808 498 PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEAN 564 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 564 (589)
|.++..++..|.+.|++++|+++++++. +.+|+|+.++..|+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l------------------------~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRAL------------------------ALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHCcCCHHHHHHhhh
Confidence 4578899999999999999999999996 889999999998875
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00011 Score=51.70 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=33.0
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWAN 469 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 469 (589)
..|++++|+++|+++.... +-+...+..++.+|.+.|++++|.++++++ ...|+...|..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 4566666666666665431 224555555666666666666666666666 34455444433
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00049 Score=53.85 Aligned_cols=86 Identities=23% Similarity=0.174 Sum_probs=56.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhC---CCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC---CCcchHHHHHHHh
Q 007808 438 MVDLLARAGRLAEAVDFVKRM---PIEAD--AVIWANLLGSCRVYKNVELAELALERLTELEPK---NPANFVMLSNIYG 509 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 509 (589)
+..++-..|+.++|+.+|++. +.... ...+-.+...+...|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455666777777777777765 21211 223444556677777777777777777776666 5556666667777
Q ss_pred hcCChHHHHHHHHH
Q 007808 510 DLGRWKDVARIKVA 523 (589)
Q Consensus 510 ~~g~~~~A~~~~~~ 523 (589)
..|++++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777776543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.16 Score=51.13 Aligned_cols=233 Identities=13% Similarity=0.084 Sum_probs=141.9
Q ss_pred CCchHHHhHHHHHHHcCCChHHHHHHHccCCC-CCeehHHHH----------HHHHHhCCCHHHHHHHHHhCCCCChhHH
Q 007808 132 RANIFVGTALIELYSTGKAIEAAYKVFGEMDE-RNVVVWTSM----------INGYISCGDIVSARCLFELAPERDVILW 200 (589)
Q Consensus 132 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l----------~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 200 (589)
.|.+..|..|.......-.++-|+..|-+... +++.....| ...-+--|++++|.++|-.+-.+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 46778888888777777777888877766654 222111111 1222335788888888887766654
Q ss_pred HHHHHHHhcCCChHHHHHHhcccCC-----CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCCh
Q 007808 201 NTIVSGYIDVRNMIEARKLFDQMPK-----KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLF 275 (589)
Q Consensus 201 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 275 (589)
.+..+.+.|+|-.+.++++.--. .-...|+.+.+.+.....|++|.+.|..... -...+.++.+..++
T Consensus 766 --Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~ecly~le~f 838 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIECLYRLELF 838 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHHHHHHHHhh
Confidence 34556677888888887765432 1235688888888888888888888876553 12245566666555
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 007808 276 FEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNS 355 (589)
Q Consensus 276 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (589)
++-..+... ++-+....-.+..++.+.|--++|.+.+-+ .+.+ .+-+..+...++|.+|.++-++
T Consensus 839 ~~LE~la~~------Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 839 GELEVLART------LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred hhHHHHHHh------cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHHHHHHHHHHh
Confidence 554444433 333444555666777788877777665533 2212 2244556677788888888777
Q ss_pred CCCCCcchHHH--------------HHHHHHhCCChHHHHHHHHHHHH
Q 007808 356 MDTKDLITWNT--------------IISGLAMHGRGAGALSLFHEMKN 389 (589)
Q Consensus 356 ~~~~~~~~~~~--------------l~~~~~~~~~~~~A~~~~~~m~~ 389 (589)
..-|.+.+.-+ -|..+.+.|+.-.|-+++.+|.+
T Consensus 904 ~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 904 FQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 66554432211 12334445555556666666654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0051 Score=48.19 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=67.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHH
Q 007808 366 TIISGLAMHGRGAGALSLFHEMKNAGEMPD--GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVDLL 442 (589)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 442 (589)
.+..++-..|+.++|+.+|++....|+... ...+..+..++...|++++|..++++....+.-.+ +......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667788999999999999999886654 34566778888999999999999998876532111 222333445677
Q ss_pred HhcCCHHHHHHHHhhC
Q 007808 443 ARAGRLAEAVDFVKRM 458 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~ 458 (589)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 8889999998877554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0015 Score=63.14 Aligned_cols=117 Identities=8% Similarity=0.073 Sum_probs=64.5
Q ss_pred CCCccchHHHHHHHHccCChhHHHHHhhcCCC-C-----CcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHH
Q 007808 31 EKSDYITPRIITACAQLKQMTYARKMFDKITD-Q-----NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFP 104 (589)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 104 (589)
+.+.......++.+....+++.+..++-+... | -..+..++++.|...|..+.+++++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444444555555555555555555544432 1 12244466666666666666666666666666666666666
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHc
Q 007808 105 IVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYST 147 (589)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 147 (589)
.||..+.+.|++..|.++..+|...+...+..++..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666555544444444433333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0033 Score=58.44 Aligned_cols=131 Identities=12% Similarity=0.146 Sum_probs=82.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA-CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL 441 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (589)
+|..++....+.+..+.|..+|.+.++.+ ..+...|...+.. +...++.+.|.++|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46666666667677777777777777432 2233344443333 333466666888888777643 4556667777777
Q ss_pred HHhcCCHHHHHHHHhhC-CCCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 442 LARAGRLAEAVDFVKRM-PIEADA----VIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+.+.|+.+.|..+|++. ..-|.. ..|...+..=.+.|+.+....+.+++.+.-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 77888888888888776 222322 46777776667778888888888887776665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.14 Score=48.86 Aligned_cols=132 Identities=12% Similarity=0.130 Sum_probs=76.0
Q ss_pred HHHccCChhHHHHHhhcCCC---CC------cccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH--h
Q 007808 43 ACAQLKQMTYARKMFDKITD---QN------VVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSC--V 111 (589)
Q Consensus 43 ~~~~~~~~~~A~~~~~~~~~---~~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~ 111 (589)
.+.+.+++.+|.++|.++-+ .+ ...-+.++++|... +.+.....+....+. .| ...|..+..++ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 34567788888888877654 11 12344566666543 444444444444443 23 34455555444 3
Q ss_pred ccCChHHHHHHHHHHHHh--CCC------------CchHHHhHHHHHHHcCCChHHHHHHHccCCC--------CCeehH
Q 007808 112 KINALREGEELHCLVLKN--GFR------------ANIFVGTALIELYSTGKAIEAAYKVFGEMDE--------RNVVVW 169 (589)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~ 169 (589)
+.+++.+|.+.+....++ +.. +|-..-+..+..+...|++.++..+++++.+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667788888777766554 222 1222334556677778888888888877753 355666
Q ss_pred HHHHHHHHh
Q 007808 170 TSMINGYIS 178 (589)
Q Consensus 170 ~~l~~~~~~ 178 (589)
+.++-.+.+
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 665444443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00067 Score=64.84 Aligned_cols=96 Identities=13% Similarity=0.034 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHH----HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAV----IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 505 (589)
+...++.+..+|.+.|++++|+..|++. .+.|+.. .|..+..+|...|+.++|++.+++++++.+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 3566777777777777777777777775 5566532 4667777777777777777777777776321 121111
Q ss_pred H--HHhhcCChHHHHHHHHHhhhCCC
Q 007808 506 N--IYGDLGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 506 ~--~~~~~g~~~~A~~~~~~~~~~~~ 529 (589)
. .+....+.++..++++.+.+.|.
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1 11122334455666666666554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0035 Score=47.17 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHhccC--------cHHHHHHHHHHhHHhcCCCCChHHH
Q 007808 365 NTIISGLAMHGRGAGALSLFHEMKNAGE-MPDGITFIGILCACTHMG--------LVEEGLSYFQSMAMDYSIVPQIEHY 435 (589)
Q Consensus 365 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~ 435 (589)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-..+.+|+.++.. +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666677999999999999999999 899999999998765432 345667788888655 788999999
Q ss_pred HHHHHHHHh
Q 007808 436 GCMVDLLAR 444 (589)
Q Consensus 436 ~~l~~~~~~ 444 (589)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988877765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.023 Score=53.86 Aligned_cols=159 Identities=17% Similarity=0.099 Sum_probs=99.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC-------CcchHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 007808 335 ALIDMYAKCGIIENAVDVFNSMDTK-------DLITWNTIISGLAM---HGRGAGALSLFHEMKNAGEMPDGITFIGILC 404 (589)
Q Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 404 (589)
.++-.|....+++..+++.+.+... ....-...+-++.+ .|+.++|++++..+....-.+++.+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455577777777777777777643 12222334455666 7888889998888666555777778877776
Q ss_pred HHhc---------cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH----HHHHHH---hh-C------CCC
Q 007808 405 ACTH---------MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA----EAVDFV---KR-M------PIE 461 (589)
Q Consensus 405 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~------~~~ 461 (589)
.|-. ....++|...|.+.- .+.|+..+--.++..+.-.|... +..++- .. . ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 234677777776554 44565443333444444444321 222222 11 1 123
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 462 ADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 462 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
.+...+.+++.++.-.|++++|.+.++++.++.|.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 45666677888888999999999999999999876
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0024 Score=59.37 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHhhC--CCCCCHHHHHHHHHH
Q 007808 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR-AGRLAEAVDFVKRM--PIEADAVIWANLLGS 473 (589)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 473 (589)
..|..++....+.+..+.|..+|.++++. -..+..+|...+..-.. .++.+.|.++|+.+ ....+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35778888888999999999999999743 22345556655555344 56666799999998 355677889999999
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 474 CRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
+...|+.+.|..+|++++..-|.+. ..|...++.-.+.|+++.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999766533 4888899999999999999999988864
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0003 Score=44.04 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
.++..+...|...|++++|++.|+++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356778899999999999999999999999999998888765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0044 Score=60.02 Aligned_cols=108 Identities=11% Similarity=0.075 Sum_probs=61.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhCCC-C-----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 007808 328 GNVCVGNALIDMYAKCGIIENAVDVFNSMDT-K-----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIG 401 (589)
Q Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 401 (589)
.+......+++......+++.+..++.+... | ...+..+++..|.+.|..++++.+++.=...|+-||..+++.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3343444444444444555555555554432 1 223455666666666667777777666666677777777777
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG 436 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 436 (589)
|+..+.+.|++..|.++...|... ....+..++.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~ 177 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQA 177 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHH
Confidence 777777777777776666655433 3333333433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00065 Score=48.41 Aligned_cols=64 Identities=22% Similarity=0.315 Sum_probs=50.1
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
...|.+.+++++|+++++++ ...| +...+.....++.+.|++++|.+.++++++..|+++....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35678889999999998887 4455 4556666778888999999999999999999998665443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.17 Score=47.34 Aligned_cols=243 Identities=12% Similarity=0.064 Sum_probs=135.8
Q ss_pred cCCChHHHHHHhcccCC-CChhhH--HHHHHHHHhcCCHHHHHHHHhhCCC--CC-chhHHHHHHHHHhCCChHHHHHHH
Q 007808 209 DVRNMIEARKLFDQMPK-KDVISW--NTMLSGYANNGDVEECKRLFEEMPE--RN-VFSWNGLIGGYANNGLFFEVLDAF 282 (589)
Q Consensus 209 ~~g~~~~a~~~~~~~~~-~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~ 282 (589)
-.|+++.|.+-|+.|.. |..... ..|.-...+.|..+.|...-+..-. |. ...+...+...+..|+|+.|++++
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 45777777777777765 333221 2222333456777777776666554 22 345677788888888888888888
Q ss_pred HHHHHcCCCCCcHHH--HHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhhC
Q 007808 283 KRMLTEGRVFPNDAT--IVTVLSAC---ARLGALDFSKWVHVYAEYNGYQGNV-CVGNALIDMYAKCGIIENAVDVFNSM 356 (589)
Q Consensus 283 ~~~~~~~~~~p~~~~--~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (589)
+.-.....+.++..- -..++.+- .-..+...|...-.+..+. .|+. ..-..-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 776665434454332 11222221 1122344444444444433 2322 12223345677777777777777777
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHH
Q 007808 357 DTKDLITWNTIISGLAMHGRGAGALSLFHEMKN-AGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEH 434 (589)
Q Consensus 357 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 434 (589)
.+..++.--..+..+.+.|+ .++.-+++..+ ..++| +..+...+..+-...|++..|..--+... ...|....
T Consensus 290 WK~ePHP~ia~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~ 364 (531)
T COG3898 290 WKAEPHPDIALLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESA 364 (531)
T ss_pred HhcCCChHHHHHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhH
Confidence 65444433333334444444 34444444332 12445 34555666667777777777776655554 44577777
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHhhC
Q 007808 435 YGCMVDLLAR-AGRLAEAVDFVKRM 458 (589)
Q Consensus 435 ~~~l~~~~~~-~g~~~~A~~~~~~~ 458 (589)
|..|.+.-.- .|+-.++...+-+.
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHH
Confidence 7766665543 37777777776665
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0073 Score=58.08 Aligned_cols=65 Identities=12% Similarity=0.093 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+.....+..++.-.++++.|...|++. ...||. ..|......+.-.|+.++|.+.++++++++|.
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 333333444444444455555555554 233432 22333333334455555555555555555554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00049 Score=56.13 Aligned_cols=84 Identities=10% Similarity=-0.049 Sum_probs=70.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeecc
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCL 549 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (589)
...-+...|++++|+.+|+-+.-.+|.++..+..|+.++...|++++|+..|....
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~------------------------ 98 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF------------------------ 98 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Confidence 33446799999999999999999999999999999999999999999999998875
Q ss_pred ccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 550 SRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 550 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
.++++||....+.|.-|..+|+...|..
T Consensus 99 ~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 99 TLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 4566777777777777777777766654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.28 Score=48.78 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=120.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA 405 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 405 (589)
+...|...+..-...|+.+.+.-+|++..-| -...|-..+.-....|+.+-|..++....+-.++-.+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4566777777788889999998888887754 2234555555555558888888888877765433333333333334
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCCh-HHHHHHHHHHHhcCCHHHHH---HHHhhC-CCCCCHHHHHHHH-----HHHh
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQI-EHYGCMVDLLARAGRLAEAV---DFVKRM-PIEADAVIWANLL-----GSCR 475 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~~ 475 (589)
+...|+++.|..+++.+..+. |+. ..-..-+....+.|..+.+. +++... ...-+......+. -.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 566789999999999997643 553 22223345666788888877 444444 1122222222222 2245
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
-.++.+.|..++.++.+..|++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 6788999999999999999999999999988877665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.018 Score=50.65 Aligned_cols=166 Identities=15% Similarity=0.107 Sum_probs=88.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCC-C-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEM-P-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL 441 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (589)
+-.....+...|++.+|+..|+++...... | -......++.++.+.|+++.|...++..++.+.-.|... +...+.+
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g 86 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLG 86 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHH
Confidence 334455566777788888888777764211 1 123445566677777777777777777776654444321 1111111
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc-----------------chHHH
Q 007808 442 LARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA-----------------NFVML 504 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~~~l 504 (589)
.+......... ......+...+|...|+.+++.-|+++. .-..+
T Consensus 87 ~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 87 LSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111100 0011223334555555555555555432 22356
Q ss_pred HHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCch---HHHHHHHHHHHHcccCC
Q 007808 505 SNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRK---SIVRAEANMIKLLPQNN 573 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~ 573 (589)
+..|.+.|.+..|+.-++.+. +.-|+.+ .++..+...|.++|...
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~------------------------~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVI------------------------ENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHH------------------------HHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHH------------------------HHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 788999999999999999985 4455554 45666778888888775
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.1 Score=47.24 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=27.9
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHh
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (589)
+...|.+.|.+..|..-++.+++++.-.|. ......++.+|...|..++|.++..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 344455556666666666655554322222 2333445555666666665555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.34 Score=49.34 Aligned_cols=115 Identities=13% Similarity=0.149 Sum_probs=88.7
Q ss_pred CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHH
Q 007808 393 MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLG 472 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 472 (589)
.-...+.+--+.-+...|+..+|.++-.+.. .||-..|-.-+.+++..+++++-+++-+... . +.-|.-++.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-s--PIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-S--PIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-C--CCCchhHHH
Confidence 3444456666777778899999999877663 3888888888899999999999888888774 1 334555788
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
+|.+.|+.++|..++.+.-. +...+.+|.+.|++.+|.++--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999988876433 22678899999999999887443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.03 Score=49.46 Aligned_cols=174 Identities=12% Similarity=0.138 Sum_probs=104.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCC-CC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc
Q 007808 368 ISGLAMHGRGAGALSLFHEMKNAGE-MP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA 445 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (589)
+..-.+.|++++|...|+.+..+.. .| ...+...++-++.+.++++.|+..+++..+.++-.||.. |...+.++.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs-- 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS-- 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH--
Confidence 3445566778888888877776421 11 334555666677777888888888887777666666653 333344433
Q ss_pred CCHHHHHHHHhhCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC-----------------cchHHHHHH
Q 007808 446 GRLAEAVDFVKRMP-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP-----------------ANFVMLSNI 507 (589)
Q Consensus 446 g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----------------~~~~~l~~~ 507 (589)
.|..+. ..-|. .-..+|...++..+..-|+++ ..=..+++.
T Consensus 118 --------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~Iary 176 (254)
T COG4105 118 --------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARY 176 (254)
T ss_pred --------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 00011 112233333444444444421 122356788
Q ss_pred HhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 508 YGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
|.+.|.|..|..-+++|.+.- ..-|.-.+++..+.++|..+|..++|.+...+|..-|
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y---------------------~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENY---------------------PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHhcChHHHHHHHHHHHhcc---------------------ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 999999999999999996331 1233445566667888999999999999888886654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.099 Score=51.98 Aligned_cols=87 Identities=8% Similarity=0.101 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchH----------
Q 007808 295 DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITW---------- 364 (589)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------- 364 (589)
..+...+...+.+...+..|.++|..+-+. ..+++.+...++|.+|..+-+..++--...|
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 334444444455555666666666665432 2356666677777777777776664222222
Q ss_pred ---HHHHHHHHhCCChHHHHHHHHHHHHC
Q 007808 365 ---NTIISGLAMHGRGAGALSLFHEMKNA 390 (589)
Q Consensus 365 ---~~l~~~~~~~~~~~~A~~~~~~m~~~ 390 (589)
...-.+|.+.|+..+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 22223455566666666666666543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.048 Score=47.89 Aligned_cols=125 Identities=13% Similarity=0.034 Sum_probs=77.1
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCCHHHH-----HHHH
Q 007808 400 IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP---IEADAVIW-----ANLL 471 (589)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~-----~~l~ 471 (589)
+.++..+...|.+.-....+++.++. .-+.++.....|+..-.+.|+.+.|...|++.. ..-+..+. ....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34455555556666666666666442 223345555566666666666666666666431 11111222 2222
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..+.-++++..|...+.++++.+|.++.+.++-+-++.-.|+..+|++.++.|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566778888888888888888888888888888878888888888888875
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00031 Score=40.87 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=27.5
Q ss_pred ccccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 548 CLSRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 548 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
+++++|+++.++..||++|...|+.++|+.
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999988763
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0027 Score=54.20 Aligned_cols=98 Identities=9% Similarity=0.148 Sum_probs=78.2
Q ss_pred HHHHhhcC--CCCCcccHHHHHHHHHc-----CCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccC-----------
Q 007808 53 ARKMFDKI--TDQNVVSWNAMFNGYAQ-----NEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKIN----------- 114 (589)
Q Consensus 53 A~~~~~~~--~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------- 114 (589)
-...|+.. ...+-.+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|+..+-+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556655 34677888888888864 4667777778889999999999999999999875431
Q ss_pred -----ChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC
Q 007808 115 -----ALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA 150 (589)
Q Consensus 115 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 150 (589)
+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 235588999999999999999999999999987764
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.05 Score=47.78 Aligned_cols=138 Identities=11% Similarity=0.022 Sum_probs=100.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----CChhHHHH
Q 007808 261 SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ-----GNVCVGNA 335 (589)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~ 335 (589)
..+.++.++...|.+.-.+..+++.++.. .+.++.....+.+...+.||.+.|...++...+..-. .+..+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 44667777888899999999999999876 5667778888999999999999999999977764333 33333334
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIG 401 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 401 (589)
....|.-++++.+|...|.++... ++..-|.-.-++.-.|+...|++.++.|.+. .|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 445566778888888888877743 4455555555555668888899999988884 555544443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.017 Score=46.19 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=50.8
Q ss_pred HHHHHhcCCHHHHHHHHhhCC----CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc---chHHHHHHHhh
Q 007808 439 VDLLARAGRLAEAVDFVKRMP----IEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA---NFVMLSNIYGD 510 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~ 510 (589)
.....+.|++++|.+.|+.+. ..| ....-..++.+|.+.|++++|...+++.++++|.++. ++...+-++.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 444557888888888888772 222 2344555778888999999999999999998888765 33344444444
Q ss_pred cCC
Q 007808 511 LGR 513 (589)
Q Consensus 511 ~g~ 513 (589)
...
T Consensus 97 ~~~ 99 (142)
T PF13512_consen 97 QDE 99 (142)
T ss_pred Hhh
Confidence 433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00076 Score=48.82 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----CCCC---CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTEL----EPKN---PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+++.+...|...|++++|+..|++++++ .+++ ..++..++.++...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556666667777777777777777652 2221 3466677777777777777777776653
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.012 Score=55.19 Aligned_cols=93 Identities=12% Similarity=0.121 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
.+++.+.-+|.+.+++.+|++.-.+. .. +++...+-.-..+|...|+++.|+..|+++++++|.|..+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35677888999999999999988877 33 45777777777999999999999999999999999999999999999888
Q ss_pred cCChHHH-HHHHHHhh
Q 007808 511 LGRWKDV-ARIKVAMR 525 (589)
Q Consensus 511 ~g~~~~A-~~~~~~~~ 525 (589)
..++.+. .++|..|-
T Consensus 338 ~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8776665 67888884
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.00097 Score=63.77 Aligned_cols=59 Identities=19% Similarity=-0.082 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--CCCCcc---hHHHHHHHhhcCChHHHHHHHHHh
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELE--PKNPAN---FVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
...++.+..+|.+.|++++|+..|++++ . |++..+ |++++.+|...|+.++|++.+++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rAL--eL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETAL--ELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555554432 4 333322 555555555555555555555544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0078 Score=50.33 Aligned_cols=87 Identities=13% Similarity=0.142 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHhhC-C-CCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhc
Q 007808 439 VDLLARAGRLAEAVDFVKRM-P-IEAD-----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDL 511 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~-~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 511 (589)
.+-+.+.|++++|..-|..+ . .++. ...|..-..++.+.+.++.|+.-..++++++|....++..-+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 45567888888888887766 2 2222 334444556778999999999999999999999888888889999999
Q ss_pred CChHHHHHHHHHhh
Q 007808 512 GRWKDVARIKVAMR 525 (589)
Q Consensus 512 g~~~~A~~~~~~~~ 525 (589)
.++++|++-|+++.
T Consensus 182 ek~eealeDyKki~ 195 (271)
T KOG4234|consen 182 EKYEEALEDYKKIL 195 (271)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999999995
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0059 Score=58.70 Aligned_cols=144 Identities=9% Similarity=0.032 Sum_probs=104.4
Q ss_pred cHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhc---------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCC
Q 007808 411 LVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARA---------GRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYK 478 (589)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 478 (589)
..+.|..+|.+......+.|+ ...|..+..++... ....+|.+..+++ .+.| |......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 467888899988755566676 45555555444322 2234556666655 3444 5666666667677788
Q ss_pred CHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHH
Q 007808 479 NVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSI 558 (589)
Q Consensus 479 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 558 (589)
+++.|...|+++..++|+.+.++...++++.-.|+.++|.+.+++.. +++|....+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al------------------------rLsP~~~~~ 408 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL------------------------QLEPRRRKA 408 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh------------------------ccCchhhHH
Confidence 89999999999999999999999999999999999999999998864 788998888
Q ss_pred HHHHHHH--HHHcccCCCCcchH
Q 007808 559 VRAEANM--IKLLPQNNHPLTFI 579 (589)
Q Consensus 559 ~~~l~~~--~~~~~~~~~~~~~~ 579 (589)
-..--|+ |... ..++||.+.
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHH
Confidence 7777776 4333 333566554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.014 Score=51.89 Aligned_cols=89 Identities=25% Similarity=0.333 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC----C---CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC---CCcchHH
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRM----P---IEADAVIWANLLGSCRVYKNVELAELALERLTELEPK---NPANFVM 503 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~----~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~ 503 (589)
.|+.-+.. .+.|++.+|...|... + ..|+...| |..++...|+++.|...|..+.+-.|+ -|+.+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 46654443 4667788887777665 1 34455555 778888888888888888888886554 4567888
Q ss_pred HHHHHhhcCChHHHHHHHHHhh
Q 007808 504 LSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 504 l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|+.+..+.|+.++|...++++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888888888888888885
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=50.26 Aligned_cols=96 Identities=15% Similarity=0.223 Sum_probs=62.8
Q ss_pred HHHhhC--CCCCcchHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc--------------
Q 007808 351 DVFNSM--DTKDLITWNTIISGLAM-----HGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHM-------------- 409 (589)
Q Consensus 351 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------------- 409 (589)
..|+.. ..++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34466666667776664 366666777888888888888999999888876542
Q ss_pred --CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007808 410 --GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGR 447 (589)
Q Consensus 410 --g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 447 (589)
.+-+-|++++++| +.+|+.||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 1234566666666 455666666666666666655543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0098 Score=52.94 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC---CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeC
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKN---PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN 541 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 541 (589)
..|+.-+.. .+.|++..|...|...++.-|++ +.+++-|++++...|++++|..+|-.+.+.-
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~------------- 208 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY------------- 208 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-------------
Confidence 356655554 47788999999999999988874 5689999999999999999999999885322
Q ss_pred CeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 542 EVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
-.+|.-|+.+.-||.+..++|+.++|-..+..|...|
T Consensus 209 --------P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 209 --------PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred --------CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 2678889999999999999999999988888877665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0023 Score=46.28 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----CC---CC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRMP-----IE---AD-AVIWANLLGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
+++.+...|...|++++|++.+++.. .. |+ ..++..+..++...|++++|++++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555566666666666665555541 11 11 345556666777777777777777776653
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.05 Score=42.29 Aligned_cols=141 Identities=13% Similarity=0.174 Sum_probs=85.3
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
..-.|..++..++..+...+ .+..-++.++--....-+-+-..+.++.+-+- .|. ..+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDi----------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDI----------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-G----------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------hhhcchHH
Confidence 34467777778887777762 34455665655444445555555555555222 221 23444555
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCc
Q 007808 451 AVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFK 530 (589)
Q Consensus 451 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 530 (589)
....+-.+. .+.......+..+..+|+-+.-.+++..+.+.+..+|+.+..++.+|.+.|+..++-++++++-+.|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555544443 234555666788889999999999999988655555899999999999999999999999999888875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.14 Score=46.26 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=80.9
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHH---HHHHHhcCCCHH
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWAN---LLGSCRVYKNVE 481 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~ 481 (589)
.....|++.+|..+|+...... +-+......|+.+|...|+.+.|..++..++..-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4567788889998888886532 23345566788899999999999999998864433333333 122232222222
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.. .+++-...+|+|...-..++..|...|+.++|.+.+=.+.
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222 3444556789999999999999999999999999776664
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.15 Score=50.87 Aligned_cols=217 Identities=13% Similarity=0.085 Sum_probs=103.8
Q ss_pred HHHHHHHHHhcCChhHH--HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC--cchHHH-----HH
Q 007808 298 IVTVLSACARLGALDFS--KWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKD--LITWNT-----II 368 (589)
Q Consensus 298 ~~~l~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~-----l~ 368 (589)
++..-.+|.+..+..-- ..-++++.+.|-.|+... +...++-.|++.+|-++|.+-...+ ...|+- +.
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~a 677 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYA 677 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHH
Confidence 44444455555544332 223445556665565533 3344555666777777666544221 111211 12
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHH-----hHHhcCC---CCChHHHHHHHH
Q 007808 369 SGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQS-----MAMDYSI---VPQIEHYGCMVD 440 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~---~~~~~~~~~l~~ 440 (589)
+-+...|..++-..+.++-.+ +.-|..--......+...|+.++|..+.-+ +.-+-+. ..+..+...+..
T Consensus 678 QE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ 755 (1081)
T KOG1538|consen 678 QEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCAT 755 (1081)
T ss_pred HHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHH
Confidence 234444554444444333221 000110011222334445665555544211 1000011 123344444444
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH-------------HHH
Q 007808 441 LLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML-------------SNI 507 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-------------~~~ 507 (589)
-+.+...+.-|.++|.+|+. ...+++.....+++.+|..+.++.-+.-|+ .|.-. -.+
T Consensus 756 ylk~l~~~gLAaeIF~k~gD------~ksiVqlHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 756 YLKKLDSPGLAAEIFLKMGD------LKSLVQLHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred HHhhccccchHHHHHHHhcc------HHHHhhheeecccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHH
Confidence 55556666677777777751 123455666777777777777776665554 22222 234
Q ss_pred HhhcCChHHHHHHHHHhhhCC
Q 007808 508 YGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~~~~ 528 (589)
|-++|+-.+|.++++++....
T Consensus 827 fhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHHhcchHHHHHHHHHhhhhh
Confidence 666777777777777765433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.41 Score=42.13 Aligned_cols=178 Identities=12% Similarity=0.022 Sum_probs=78.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 007808 265 LIGGYANNGLFFEVLDAFKRMLTEGRVFP-NDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKC 343 (589)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (589)
....+...|++.+|++.|+.+....+..| -......++.++.+.|+++.|...++..++.-......-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 44556677777777777777776531111 12344455666677777777777777666542111111111111111110
Q ss_pred CChHHHHHHHhhCCCCCc-------chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHH
Q 007808 344 GIIENAVDVFNSMDTKDL-------ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGL 416 (589)
Q Consensus 344 g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (589)
...... + ...+|. ..+..++.-|-......+|...+..+... .- ..-..+...|.+.|.+..|.
T Consensus 91 ~~~~~~---~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la-~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGI---L--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LA-EHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHH---H---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HH-HHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccc---h--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HH-HHHHHHHHHHHHcccHHHHH
Confidence 000000 0 001111 12333444444444444454444443321 00 01123455667777777777
Q ss_pred HHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHH
Q 007808 417 SYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEA 451 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 451 (589)
.-++.+++++.-.+. ......++.+|.+.|..+.|
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777665422221 23345566677777766644
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=1.3 Score=46.59 Aligned_cols=114 Identities=11% Similarity=-0.020 Sum_probs=49.1
Q ss_pred CChHHHHHHHHHHHHC-CCCCCHh--HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHH
Q 007808 375 GRGAGALSLFHEMKNA-GEMPDGI--TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEA 451 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~-~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 451 (589)
.+.+.|...+...... ++.+... ....+.......+..+++...++..... ..+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 4456666666655332 2222211 1222222222222244455554443211 12333333334444466666666
Q ss_pred HHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 452 VDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 452 ~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
...+..|+ ..-...-.-=+..++...|+.++|...|+++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666663 11111111223344444666666666666653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.82 Score=43.83 Aligned_cols=128 Identities=15% Similarity=0.098 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH-HHHHHHH
Q 007808 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIW-ANLLGSC 474 (589)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~ 474 (589)
..|..++.+-.+..-++.|..+|-++.+..-..+++.++++++..++ .|+..-|..+|+-. ..-||...| +..+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34666777777888899999999999655226678888898888664 67778888998865 334554443 4555667
Q ss_pred hcCCCHHHHHHHHHHHHccCCCC--CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 475 RVYKNVELAELALERLTELEPKN--PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
...++-+.|..+|+..++.-.++ ...|..++.--..-|+...+..+=+++.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 78889999999999777632222 5578888888888999999888888775
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.85 Score=43.74 Aligned_cols=93 Identities=14% Similarity=0.181 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCc---ccHHHHHHHHHcCCChhHHHHHHHHhhh
Q 007808 17 HLHQIQTQVVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNV---VSWNAMFNGYAQNEFHRTVVVLFTQMKK 93 (589)
Q Consensus 17 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 93 (589)
+..++.+.+.+ .+.|...|-.|+.-|...+..++-+++++++..|-+ .+|..-+.+-...+++.....+|.+...
T Consensus 27 D~lrLRerIkd--NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 27 DELRLRERIKD--NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred hHHHHHHHhhc--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 34455555543 467889999999999999999999999999998654 3788888888888999999999999987
Q ss_pred CCCCCCcccHHHHHHHHhcc
Q 007808 94 LDAMPNCFTFPIVLKSCVKI 113 (589)
Q Consensus 94 ~~~~p~~~~~~~ll~~~~~~ 113 (589)
.. .+...|..-+....+.
T Consensus 105 k~--l~ldLW~lYl~YIRr~ 122 (660)
T COG5107 105 KS--LNLDLWMLYLEYIRRV 122 (660)
T ss_pred hh--ccHhHHHHHHHHHHhh
Confidence 64 3455666666554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.63 Score=41.86 Aligned_cols=193 Identities=20% Similarity=0.148 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHH-
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMDT-----KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILC- 404 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~- 404 (589)
.........+...+.+..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3344444455555555555555544321 222344444445555555666666666655532222 111111222
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCC--CCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC--HHHHHHHHHHHhcCCC
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYSI--VPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD--AVIWANLLGSCRVYKN 479 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~ 479 (589)
.+...|+++.|...+++... ..- ......+......+...++.++|...+.+. ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45566666666666666532 110 012223333333455566666666666665 22222 4455555566666666
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++.|...+..+....|.....+..++..+...|.++++...+.+..
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777777777666544455555556555556666666666653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0095 Score=49.38 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
....++..+...|++++|...+++++..+|.+...|..++.+|...|+..+|.+.|+++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345566777889999999999999999999999999999999999999999999998884
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.61 Score=40.88 Aligned_cols=86 Identities=15% Similarity=0.198 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHc----cCCCCCcch
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRMP-------IEADA-VIWANLLGSCRVYKNVELAELALERLTE----LEPKNPANF 501 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~ 501 (589)
.+......|++..++++|-..+.+-. .-|+. ..+-..+-.+....++..|+..++...+ ..|.+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445566777777777766555442 11222 2233444445556678888888877665 345556666
Q ss_pred HHHHHHHhhcCChHHHHHH
Q 007808 502 VMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 502 ~~l~~~~~~~g~~~~A~~~ 520 (589)
..|+..| ..|+.+++..+
T Consensus 232 enLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHh-ccCCHHHHHHH
Confidence 6666665 34565555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.06 Score=49.61 Aligned_cols=124 Identities=12% Similarity=0.097 Sum_probs=61.1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCCHHHHH-
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM-------PIEADAVIWA- 468 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~- 468 (589)
++..++...+.++++++.|+.+.+-..-..| ..++..|...|.+..++++|.-+..++ ++..-..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 3444555555666666666555432111111 234555666666666666655544433 1111111122
Q ss_pred ----HHHHHHhcCCCHHHHHHHHHHHHccC------CCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 469 ----NLLGSCRVYKNVELAELALERLTELE------PKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 469 ----~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.+.-++...|....|.+..+++.++. |........++++|...|+.+.|..-|+..
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 22244556666666666666665521 222334455666666666666666555544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.6 Score=45.03 Aligned_cols=142 Identities=14% Similarity=0.149 Sum_probs=65.4
Q ss_pred HHHcCCChHHHHHHHccCCCC-----CeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHH
Q 007808 144 LYSTGKAIEAAYKVFGEMDER-----NVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARK 218 (589)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 218 (589)
-+.+.+.+++|+.+.+..... -...+..+|..+...|++++|....-.|...+..-|......+...++......
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 334444555555555444331 112345555555555555555555555555555555555555555544443333
Q ss_pred HhcccCC-CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------CCchhHHHHHHHHHhCCChHH
Q 007808 219 LFDQMPK-KDVISWNTMLSGYANNGDVEECKRLFEEMPE--------------------RNVFSWNGLIGGYANNGLFFE 277 (589)
Q Consensus 219 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------------~~~~~~~~l~~~~~~~g~~~~ 277 (589)
++-.-.. .+...|..++..+.. .+...-.+....-.. .+...-..|+..|...+++..
T Consensus 445 ~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~ 523 (846)
T KOG2066|consen 445 YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEK 523 (846)
T ss_pred cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHH
Confidence 3222111 233444444444443 221111111111110 111223347777777788888
Q ss_pred HHHHHHHHH
Q 007808 278 VLDAFKRML 286 (589)
Q Consensus 278 A~~~~~~~~ 286 (589)
|+.++-...
T Consensus 524 Al~~ylklk 532 (846)
T KOG2066|consen 524 ALPIYLKLQ 532 (846)
T ss_pred HHHHHHhcc
Confidence 877776653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=1.8 Score=45.05 Aligned_cols=174 Identities=11% Similarity=0.092 Sum_probs=84.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHH----HHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 68 WNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLK----SCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
-..-+..+.+...++.|+.+-+.-. .+..+...+.+ -+.+.|++++|...|-+-+.. ++|+ .+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHH
Confidence 3445556666666666665554321 22333333333 234566777766666554332 2221 1233
Q ss_pred HHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCCh-hHHHHHHHHHhcCCChHHHHHH
Q 007808 144 LYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPERDV-ILWNTIVSGYIDVRNMIEARKL 219 (589)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 219 (589)
-|.....+..--.+++.+.+ .+..--..|+.+|.+.++.+.-.++.+...+... .-....+..+.+.+-.++|..+
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 33333333333344444433 2333445666666666666666666555442111 1133445555556666666555
Q ss_pred hcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007808 220 FDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE 256 (589)
Q Consensus 220 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 256 (589)
-.+... +......+ +-..+++++|.+.+..++-
T Consensus 486 A~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 486 ATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 444332 22222222 2345677777777777663
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.93 Score=40.70 Aligned_cols=219 Identities=19% Similarity=0.104 Sum_probs=138.3
Q ss_pred CChHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHH
Q 007808 273 GLFFEVLDAFKRMLTEGRVF-PNDATIVTVLSACARLGALDFSKWVHVYAEYN-GYQGNVCVGNALIDMYAKCGIIENAV 350 (589)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (589)
+....+...+....... .. ............+...++...+...+...... ........+......+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELL-PNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcC-ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444444444433 11 12344455555556666666666555555442 22334445555556666666677777
Q ss_pred HHHhhCCCC--Cc-chHHHHHH-HHHhCCChHHHHHHHHHHHHCCCCC----CHhHHHHHHHHHhccCcHHHHHHHHHHh
Q 007808 351 DVFNSMDTK--DL-ITWNTIIS-GLAMHGRGAGALSLFHEMKNAGEMP----DGITFIGILCACTHMGLVEEGLSYFQSM 422 (589)
Q Consensus 351 ~~~~~~~~~--~~-~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 422 (589)
+.+...... +. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 777666532 21 22333333 67888999999999998865 333 2333444444567788999999999888
Q ss_pred HHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 423 AMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 423 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
... ... ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 194 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 194 LKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred Hhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 652 223 3667778888899999999999998887 34454 444555555555777899999999999999886
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.2 Score=50.40 Aligned_cols=114 Identities=19% Similarity=0.124 Sum_probs=70.5
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHH-HHHHHHhcCCHHHHHHHHhhCCC-C-----CCHHHHHHHHHHHhcCCCHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVPQIEHYGC-MVDLLARAGRLAEAVDFVKRMPI-E-----ADAVIWANLLGSCRVYKNVE 481 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~ 481 (589)
..+.+.|.++++.+...+ |+...|.. -.+.+...|+.++|++.|+++.. . .....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 345667777777776432 66555543 23556667777777777776521 1 12233444556667777888
Q ss_pred HHHHHHHHHHccCCCCCcchHHH-HHHHhhcCCh-------HHHHHHHHHhh
Q 007808 482 LAELALERLTELEPKNPANFVML-SNIYGDLGRW-------KDVARIKVAMR 525 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~-------~~A~~~~~~~~ 525 (589)
+|.+.+.++.+.+.-+...|..+ +-++...|+. ++|.++++++.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 88888888887666545444433 4446667777 77777777764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.1 Score=42.72 Aligned_cols=50 Identities=22% Similarity=0.243 Sum_probs=27.4
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..++.+.++.++..+.-+.|..++.-..-++++.+.|+|.+|+.+++++.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 44455555555555555555555555555555555555555555555553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.011 Score=34.40 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
..|..+..++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677778888888888888888888888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.06 Score=41.75 Aligned_cols=89 Identities=24% Similarity=0.184 Sum_probs=66.5
Q ss_pred HHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC----cchHHHHHHHhhcCC
Q 007808 440 DLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP----ANFVMLSNIYGDLGR 513 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 513 (589)
-++...|+.+.|++.|.+. .+ +.....||.-..++.-+|+.++|.+-+++++++.-+.. ..|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566788888888888776 22 33567788888888888888888888888888653211 256667778888888
Q ss_pred hHHHHHHHHHhhhCC
Q 007808 514 WKDVARIKVAMRDTG 528 (589)
Q Consensus 514 ~~~A~~~~~~~~~~~ 528 (589)
-+.|..-|+...+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888876544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.072 Score=44.05 Aligned_cols=71 Identities=18% Similarity=0.174 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM----DYSIVPQIEHY 435 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 435 (589)
...++..+...|++++|+.+++.+.... +.+...|..++.++...|+...|.+.|+++.+ +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4445666777888888888888887742 33667788888888888888888887776532 45777776553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.018 Score=33.42 Aligned_cols=32 Identities=31% Similarity=0.325 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45667777888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.12 Score=41.07 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=33.2
Q ss_pred CCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 391 GEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 391 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|++
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34566666667777777777777777777777666666666666666654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.021 Score=51.96 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=54.1
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC-C-CCCHHHHHHHHHHHhcCCC
Q 007808 403 LCACTHMGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP-I-EADAVIWANLLGSCRVYKN 479 (589)
Q Consensus 403 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~ 479 (589)
..-|.+.|.+++|+..|.... ...| ++.++..-..+|.+..++..|..--..+. + ..-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 445666777777777776554 3344 56666666667777777766655444331 1 1112334444444445666
Q ss_pred HHHHHHHHHHHHccCCCCC
Q 007808 480 VELAELALERLTELEPKNP 498 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~ 498 (589)
..+|.+-++.++++.|.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 7777777777777777643
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.074 Score=48.51 Aligned_cols=157 Identities=10% Similarity=-0.065 Sum_probs=115.5
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH----HHHHHHHhcCCH
Q 007808 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG----CMVDLLARAGRL 448 (589)
Q Consensus 373 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 448 (589)
-.|+..+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... ..||...|. .+..++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888888889998875 4667777887788899999999988888888753 345654443 345567789999
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC----CCcchHHHHHHHhhcCChHHHHHHHH
Q 007808 449 AEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPK----NPANFVMLSNIYGDLGRWKDVARIKV 522 (589)
Q Consensus 449 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 522 (589)
++|++.-++. .++| |...-+++...+...|+..++.++..+--..-.. -...|-..+-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999887 5554 6667777888888999999999988776542211 12345566777888899999999998
Q ss_pred HhhhCCCccC
Q 007808 523 AMRDTGFKKL 532 (589)
Q Consensus 523 ~~~~~~~~~~ 532 (589)
+=.-..++.+
T Consensus 272 ~ei~k~l~k~ 281 (491)
T KOG2610|consen 272 REIWKRLEKD 281 (491)
T ss_pred HHHHHHhhcc
Confidence 7653333333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.1 Score=40.74 Aligned_cols=148 Identities=14% Similarity=0.096 Sum_probs=101.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH
Q 007808 369 SGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRL 448 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 448 (589)
......|++.+|...|+...... +-+...-..++.+|...|+.+.|..++..+..+. -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34667889999999999888752 2245566678889999999999999998874321 111112222345556666666
Q ss_pred HHHHHHHhhCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--CCCCcchHHHHHHHhhcCChHHHH
Q 007808 449 AEAVDFVKRMPIEA-DAVIWANLLGSCRVYKNVELAELALERLTELE--PKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 449 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
.+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+......++.++.-.|.-+.+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHH
Confidence 65555555554456 55555566678888999999999888887743 456778888888888877554433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.64 E-value=1 Score=43.04 Aligned_cols=72 Identities=14% Similarity=0.052 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC-------CchhHHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007808 233 TMLSGYANNGDVEECKRLFEEMPER-------NVFSWNGLIGGYAN---NGLFFEVLDAFKRMLTEGRVFPNDATIVTVL 302 (589)
Q Consensus 233 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 302 (589)
.++-.|....+++...++.+.+... ....-...+-++-+ .|+.++|++++..++... ..+++.++..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-ENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-CCCChHHHHHHH
Confidence 3444455666666666666666542 11111223344445 677777777777754444 456666666655
Q ss_pred HHH
Q 007808 303 SAC 305 (589)
Q Consensus 303 ~~~ 305 (589)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.6 Score=38.99 Aligned_cols=167 Identities=14% Similarity=0.126 Sum_probs=97.7
Q ss_pred HHHhcCChHHHHHHHhhCCCC------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc---
Q 007808 339 MYAKCGIIENAVDVFNSMDTK------DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHM--- 409 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--- 409 (589)
.-.+.|++++|.+.|+.+... ...+.-.++.++.+.++++.|+..+++....-.......|...+.+++.-
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 345778999999999888743 22345556778889999999999999988742222223444444444311
Q ss_pred ----Cc---HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH-H-HHHHHHHhcCCCH
Q 007808 410 ----GL---VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVI-W-ANLLGSCRVYKNV 480 (589)
Q Consensus 410 ----g~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~-~-~~l~~~~~~~g~~ 480 (589)
.+ ...|..-|+.++.++ ||.. -..+|...+..+. |... + ..+..-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry---PnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY---PNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC---CCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcCh
Confidence 12 223333444444332 3321 1111211111110 1111 1 1234667888888
Q ss_pred HHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 481 ELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
..|..-++++++.-|+.+ +++..+..+|...|..++|.+.-+=+
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 888888888888766544 35556667788889888888865444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.25 Score=39.21 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=35.7
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCCHHHHHHHHHH
Q 007808 426 YSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM----PIEADAVIWANLLGS 473 (589)
Q Consensus 426 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~ 473 (589)
....|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356678888888888888888888888877765 455567778877743
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.35 Score=47.13 Aligned_cols=142 Identities=15% Similarity=0.047 Sum_probs=79.7
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 007808 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAV 452 (589)
Q Consensus 373 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 452 (589)
+..++..-++.-++..+ +.|+-.+...++ +-.......++.+++++..+.. ...+..- ......|..-
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAg-----E~~lg~s-~~~~~~g~~~--- 247 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAG-----EASLGKS-QFLQHHGHFW--- 247 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHH-----HHhhchh-hhhhcccchh---
Confidence 44555666666666665 456543322222 2234456788888888775421 0000000 0000111111
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC--CCcchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 453 DFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPK--NPANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 453 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
+.+.+-...|-..+-..+..++.+.|+.++|++.++.+++..|. +..++..|+.+|...+.+.++..++.+--+
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 11111111222333345667778888999999999888876664 455788888888889999988888887643
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.35 Score=44.31 Aligned_cols=181 Identities=12% Similarity=0.058 Sum_probs=120.8
Q ss_pred HhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHH----HHHHHHhccCcHH
Q 007808 341 AKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFI----GILCACTHMGLVE 413 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~g~~~ 413 (589)
-..|+..+|-..++++.+ .|...++.-=.+|.-.|+.+.-...+++.... ..|+...|. .+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345777777777777763 37778888888999999999999999988865 455554332 2334556889999
Q ss_pred HHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC------HHHHHHHHHHHhcCCCHHHHHHH
Q 007808 414 EGLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMPIEAD------AVIWANLLGSCRVYKNVELAELA 486 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 486 (589)
+|++.-++..+ +.| |.-.-.++...+.-.|++.++.++..+-...-+ ...|-...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99998877763 333 344455677888889999999999887641111 11222233345677999999999
Q ss_pred HHHHH--ccCCCCCcc---hHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 487 LERLT--ELEPKNPAN---FVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 487 ~~~~~--~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|++-+ ++..+|..+ |..+-.+..+...|.+-.++-+.+.
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l~ 313 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSLT 313 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhhc
Confidence 97644 466666633 3334455556666666665555543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.39 E-value=4 Score=42.30 Aligned_cols=123 Identities=11% Similarity=0.226 Sum_probs=75.8
Q ss_pred HHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCC-CChhHHHHHHHHHhcCCChH
Q 007808 136 FVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPE-RDVILWNTIVSGYIDVRNMI 214 (589)
Q Consensus 136 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 214 (589)
.+....|..+.-.|++++|-...-.|...+..-|...+..+...++......++-.... .++..|..++..+.. .+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~ 471 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK 471 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH
Confidence 45556666666677777777777777666666666666666666666655555444333 245556666665555 3222
Q ss_pred HHHHHhcccCC--------------------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc
Q 007808 215 EARKLFDQMPK--------------------KDVISWNTMLSGYANNGDVEECKRLFEEMPERNV 259 (589)
Q Consensus 215 ~a~~~~~~~~~--------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 259 (589)
.-.++...-.. .+......|+..|...+++..|..++-...++++
T Consensus 472 ~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 472 GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 22222222110 2334445688999999999999999998887654
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.37 E-value=1 Score=35.35 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=70.6
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCCh
Q 007808 270 ANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCV---GNALIDMYAKCGII 346 (589)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~ 346 (589)
.-.|..++..++..+..... +..-++.++--....-+-+-..++++.+ |--.|... ...++.+|...|..
T Consensus 13 ildG~V~qGveii~k~v~Ss----ni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS----NIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-----HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHhchHHHHHHHHHHHcCcC----CccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcch
Confidence 34577777777777776654 3333444443333333333333333322 21122211 12344444444432
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 347 ENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 347 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
.......+..+..+|+-+.-.+++..+.+.+ .|++.....+..+|.+.|+..++.+++.++.++
T Consensus 86 --------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 86 --------------SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred --------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 2233445677788888888888888877643 677777788888888889888888888887654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.37 E-value=3.5 Score=41.45 Aligned_cols=368 Identities=12% Similarity=0.026 Sum_probs=172.9
Q ss_pred chHHHHHHHHccCChhHHHHHhhcCCC--CCcc-cHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHh-
Q 007808 36 ITPRIITACAQLKQMTYARKMFDKITD--QNVV-SWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCV- 111 (589)
Q Consensus 36 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~- 111 (589)
.+..++.--....+++.++.+++.+.. |... -|-....-=.+-|..+.+.++|++-.+ |++-+...|...+.-++
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc
Confidence 333444444444445555556655543 4433 233334444556666777777766654 34555555555554443
Q ss_pred ccCChHHHHHHHHHHHHh-CCC-CchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHH---hC------C
Q 007808 112 KINALREGEELHCLVLKN-GFR-ANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYI---SC------G 180 (589)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~------g 180 (589)
..|+.......|+...+. |.+ .+...|...|..-...++......+++++.+--...++..-.-|. .. .
T Consensus 126 ~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~ 205 (577)
T KOG1258|consen 126 NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILL 205 (577)
T ss_pred cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhc
Confidence 345666666666666553 211 233345555555555666666666666665421111111111111 00 0
Q ss_pred CHHHHHHH-----------------------HHhCCCCCh---hHHHHH-------HHHHhcCCChHHHHHHhcccCC--
Q 007808 181 DIVSARCL-----------------------FELAPERDV---ILWNTI-------VSGYIDVRNMIEARKLFDQMPK-- 225 (589)
Q Consensus 181 ~~~~a~~~-----------------------~~~~~~~~~---~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~-- 225 (589)
..+++.++ .+....+.. ...+.+ -.++-..-...+.+..++.-.+
T Consensus 206 ~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikrp 285 (577)
T KOG1258|consen 206 SIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRP 285 (577)
T ss_pred CHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccc
Confidence 11111111 111111100 001111 1112222223333333333322
Q ss_pred ---------CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 007808 226 ---------KDVISWNTMLSGYANNGDVEECKRLFEEMPERN---VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFP 293 (589)
Q Consensus 226 ---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p 293 (589)
++..+|..-+..-.+.|+.+.+.-.|++..-|- ...|--.+.-....|+.+-|-.++....+-- ++-
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~ 364 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKK 364 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCC
Confidence 234566777777777788888888887776542 2344444444455577777776666655543 222
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH---HHHhhCCC--CCcchHHHHH
Q 007808 294 NDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAV---DVFNSMDT--KDLITWNTII 368 (589)
Q Consensus 294 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~--~~~~~~~~l~ 368 (589)
.+.+...-...+-..|+++.|..+++.+...- +....+-..-+....+.|+.+.+. +++....+ .+......+.
T Consensus 365 ~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~ 443 (577)
T KOG1258|consen 365 TPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLY 443 (577)
T ss_pred CcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHH
Confidence 22222222222345567777777777776654 333333333344455666666665 33333221 1222222222
Q ss_pred HH-----HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 007808 369 SG-----LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACT 407 (589)
Q Consensus 369 ~~-----~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 407 (589)
-- +.-.++.+.|..++.++.+. ++++...|..++..+.
T Consensus 444 ~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 444 VKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 21 22245666677777666664 3445555555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.93 Score=45.02 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHH
Q 007808 199 LWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEV 278 (589)
Q Consensus 199 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 278 (589)
-.+.++..+.+.|..+.|.++... . ..-.+...+.|+++.|.++.++.. +...|..|.....++|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555555432 1 122334445555555555554443 334555555555555555555
Q ss_pred HHHHHH
Q 007808 279 LDAFKR 284 (589)
Q Consensus 279 ~~~~~~ 284 (589)
.+.|.+
T Consensus 367 e~c~~k 372 (443)
T PF04053_consen 367 EECYQK 372 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.31 Score=39.22 Aligned_cols=103 Identities=11% Similarity=0.079 Sum_probs=66.5
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 475 RVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
...++.+++..++..+.-+.|+.++.-..-++++...|+|++|++++.++.+.+.... ..+.+...|+..- +
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p-------~~kAL~A~CL~al-~ 92 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP-------YGKALLALCLNAK-G 92 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch-------HHHHHHHHHHHhc-C
Confidence 3588999999999999999999999999999999999999999999998864442210 0011111122221 2
Q ss_pred chHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 555 RKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
||+=...-..+ .+.|..++++..+..|...|
T Consensus 93 Dp~Wr~~A~~~-le~~~~~~a~~Lv~al~g~~ 123 (153)
T TIGR02561 93 DAEWHVHADEV-LARDADADAVALVRALLGAQ 123 (153)
T ss_pred ChHHHHHHHHH-HHhCCCHhHHHHHHHHhccc
Confidence 23222222222 25556667777777777665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.048 Score=35.31 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=41.4
Q ss_pred chHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 500 NFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 500 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
.+..++-.+.+.|++++|.++.+.+. +.+|+|..+..+...+..++.+.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL------------------------~~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALL------------------------EIEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH------------------------HHTTS-HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHH------------------------hhCCCcHHHHHHHHHHHHHHhccC
Confidence 46678889999999999999999996 899999999999988887766543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.017 Score=33.54 Aligned_cols=27 Identities=15% Similarity=0.253 Sum_probs=23.8
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..+..++.++...|++++|++.+++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 467899999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.94 Score=42.17 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=65.0
Q ss_pred HHHHHHhcCChHHHHHHHhhCC-------CC--CcchHHHHHHHHHhCCChHHHHHHHHHHHH--CCCCCC--Hh-----
Q 007808 336 LIDMYAKCGIIENAVDVFNSMD-------TK--DLITWNTIISGLAMHGRGAGALSLFHEMKN--AGEMPD--GI----- 397 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~~~~p~--~~----- 397 (589)
+..++...+.++++++.|+... .+ ...++-.|.+.|.+..++++|+-+..+..+ +.+..+ ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444445555555555555432 11 224566666667777777776666555443 111111 11
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMD---YSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
....+.-++...|.+..|.+..++..+- .|..+- ......+.+.|-..|+.+.|..-|+++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1223444566667776666666655331 222221 334456677787888877777766654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.8 Score=43.06 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=79.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHH
Q 007808 169 WTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECK 248 (589)
Q Consensus 169 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 248 (589)
.+.++.-+-+.|..+.|+.+.+ |+.+ -.....+.|+++.|.++.++.. +...|..|.+...+.|+++-|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~-----D~~~---rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe 367 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT-----DPDH---RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAE 367 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS------HHH---HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC-----ChHH---HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444445555555555433 3322 2233456788888888777653 5668888888888888888888
Q ss_pred HHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 007808 249 RLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHV 319 (589)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (589)
+.|.+... +..|+-.|.-.|+.+.-.++.+.....| -++....++...|+.++..+++.
T Consensus 368 ~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 368 ECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888765 6667777888888877777777777666 13344445555566665555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.5 Score=35.84 Aligned_cols=41 Identities=22% Similarity=0.120 Sum_probs=19.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007808 301 VLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342 (589)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (589)
++..+...+.......+++.+...+ +.+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3344444444555555555555444 2344455555555544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.09 E-value=2.2 Score=41.39 Aligned_cols=150 Identities=13% Similarity=-0.009 Sum_probs=78.2
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHhHHHHHHHHHhccCcHHHHHHHHHHhHHh-cCCCCChHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP---DGITFIGILCACTHMGLVEEGLSYFQSMAMD-YSIVPQIEHY 435 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~ 435 (589)
...+|..++..+.+.|+++.|...+.++...+..+ .+.....-+...-..|+..+|...++..... .....+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 34567777778888888888888888777643211 2233333445556667778888877776541 1111011111
Q ss_pred HHHHHHHHhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHhc------CCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 436 GCMVDLLARAGRLAEAVDF-VKRMPIEADAVIWANLLGSCRV------YKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
..+...+.. ..+..... ........-...+..+...+.. .+..+++...|+++.++.|.....+..++..+
T Consensus 225 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 225 AELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred HHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 111111000 00000000 0000000011222233333333 37889999999999999998888888888776
Q ss_pred hhc
Q 007808 509 GDL 511 (589)
Q Consensus 509 ~~~ 511 (589)
.+.
T Consensus 303 ~~~ 305 (352)
T PF02259_consen 303 DKL 305 (352)
T ss_pred HHH
Confidence 553
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.62 Score=37.47 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHccCCCCCc
Q 007808 480 VELAELALERLTELEPKNPA 499 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~ 499 (589)
...|...|+++++.-|++..
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 56788888888888887553
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.05 E-value=1.7 Score=43.95 Aligned_cols=158 Identities=10% Similarity=-0.071 Sum_probs=88.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH-----HHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhHH
Q 007808 263 NGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA-----TIVTVLSACAR----LGALDFSKWVHVYAEYNGYQGNVCVG 333 (589)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 333 (589)
..++....=.|+-+.+++.+.+..+.+.+.-... .|..++..++. ..+.+.+.+++..+.+.= |.+....
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lfl 270 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALFL 270 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 3445555566777777777777666442322221 23333333222 345666777777776652 3233222
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCC-------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH-
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMDTK-------DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA- 405 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~- 405 (589)
-.-.+.+...|++++|++.|+..... ....+--++-.+.-..++++|.+.|.++.+.. .-+..+|..+..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 33445566677888888888765421 12233445555666778888888888877742 2344444444433
Q ss_pred HhccCcH-------HHHHHHHHHh
Q 007808 406 CTHMGLV-------EEGLSYFQSM 422 (589)
Q Consensus 406 ~~~~g~~-------~~A~~~~~~~ 422 (589)
+...|+. ++|.++|.++
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 3455666 6666666665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.03 E-value=6.7 Score=42.87 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=55.4
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH--HHHHHHHHhcCCCH
Q 007808 403 LCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVI--WANLLGSCRVYKNV 480 (589)
Q Consensus 403 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~ 480 (589)
..-+...+.+++|.-.|+..-+ ..--+.+|..+|+|.+|+.+..++....+... -..|..-+..++++
T Consensus 946 a~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 946 ADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccc
Confidence 3334455566666655554411 12234566667777777776666643333222 14455666667777
Q ss_pred HHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 481 ELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
-+|-++..+... + .......|+++..|++|+++....
T Consensus 1016 ~eAa~il~e~~s-d------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1016 YEAAKILLEYLS-D------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hhHHHHHHHHhc-C------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 666666665543 1 123344555666666666654433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.12 Score=45.99 Aligned_cols=112 Identities=10% Similarity=0.050 Sum_probs=84.7
Q ss_pred hHHHHHhhcCC--CCCcccHHHHHHHHHc-----CCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccC---------
Q 007808 51 TYARKMFDKIT--DQNVVSWNAMFNGYAQ-----NEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKIN--------- 114 (589)
Q Consensus 51 ~~A~~~~~~~~--~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--------- 114 (589)
--....|+... ++|-.+|.+.+..|.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 33455666655 4677788888887754 3566666777899999999999999999999875532
Q ss_pred -------ChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC-hHHHHHHHccCC
Q 007808 115 -------ALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA-IEAAYKVFGEMD 162 (589)
Q Consensus 115 -------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~ 162 (589)
.-+-++.++++|..+|+.||..+-..|++++.+.+. ..+..++.-.|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 223478999999999999999999999999998875 345555555554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.99 E-value=3.8 Score=39.78 Aligned_cols=62 Identities=15% Similarity=0.110 Sum_probs=32.1
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP---QIEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
..++..++..+.+.|.++.|...+..+... ...+ .+...-.-++.+...|+..+|+..++..
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~-~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQL-NPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhcc-CCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345556666666666666666666655321 1000 2222333345555666666666655544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.27 Score=38.57 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHc-cCCC-CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc
Q 007808 461 EADAVIWANLLGSCRVYK---NVELAELALERLTE-LEPK-NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC 535 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 535 (589)
.++..+--.+.+++.++. +..+.+.+++...+ -.|. ..+..+.|+-.+.|.|+|+.++++.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll---------- 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL---------- 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH----------
Confidence 344444444556665544 35566667777775 3332 34566667777778888888888777764
Q ss_pred ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 536 SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 536 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
+.+|+|+.+..+-..++.++.+.+
T Consensus 99 --------------~~e~~n~Qa~~Lk~~ied~itkeg 122 (149)
T KOG3364|consen 99 --------------ETEPNNRQALELKETIEDKITKEG 122 (149)
T ss_pred --------------hhCCCcHHHHHHHHHHHHHHhhcc
Confidence 677777777777777777666653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.81 E-value=3.6 Score=40.49 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHccCCCC
Q 007808 481 ELAELALERLTELEPKN 497 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~ 497 (589)
..|.+.+.++.+.+|.-
T Consensus 363 ~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 363 MNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 34678888888888763
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.072 Score=41.33 Aligned_cols=54 Identities=7% Similarity=-0.098 Sum_probs=51.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++...|+.+.|++.|.+++.+-|.++.+|++-+..+.-.|+.++|+.-+++..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999988885
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.026 Score=32.71 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+|..++.+|...|++++|+..+++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 468899999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.9 Score=35.14 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=25.0
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 007808 68 WNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKI 113 (589)
Q Consensus 68 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 113 (589)
-..++..+...+.+......++.+...+ ..+...++.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3445555555556666666666655554 24455555566555543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=3.7 Score=38.18 Aligned_cols=72 Identities=7% Similarity=-0.145 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
++.......+.++.+.|.. +|+..+-+.-..++. ....+.++...|+. +|...+.++.+.+|+ +.+.....+
T Consensus 204 ~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d-~~v~~~a~~ 275 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYKFDD-NEIITKAID 275 (280)
T ss_pred CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhhCCC-hhHHHHHHH
Confidence 3444444455555555552 333333333112221 22344555555553 466666666655553 444333333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.055 Score=31.87 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=21.7
Q ss_pred chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 500 NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 500 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999999854
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.063 Score=31.03 Aligned_cols=31 Identities=26% Similarity=0.193 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4556667777888888888888888887774
|
... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=4.2 Score=37.81 Aligned_cols=218 Identities=12% Similarity=0.002 Sum_probs=90.3
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCh----HHHHHHHHHHHHhCCCCchHH
Q 007808 62 DQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINAL----REGEELHCLVLKNGFRANIFV 137 (589)
Q Consensus 62 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 137 (589)
.++.......+.++...|.. .+...+..+.+. +|...=...+.+++..|+. .++...+..+... +++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 34555555555566555542 233333333322 2333333344445555542 2344444444332 344444
Q ss_pred HhHHHHHHHcCCCh-----HHHHHHHcc-CCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCC
Q 007808 138 GTALIELYSTGKAI-----EAAYKVFGE-MDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVR 211 (589)
Q Consensus 138 ~~~li~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 211 (589)
....+.++...+.- ..+...+.. +..++..+-...+.++++.|+.+..-.+...+.++|...-...+.++.+.+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 44444444443211 122222222 222344444444555555554333333333333344444444444444332
Q ss_pred -ChHHHHHHhccc-CCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 007808 212 -NMIEARKLFDQM-PKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTE 288 (589)
Q Consensus 212 -~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 288 (589)
+...+...+..+ ..++..+....+.++.+.++......+.+.+..++ .....+.++...|.. +|+..+..+.+.
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 122233222222 23555555555555555555332223333332222 122344555555553 455555555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.43 E-value=7.2 Score=40.48 Aligned_cols=112 Identities=12% Similarity=0.014 Sum_probs=50.6
Q ss_pred hcCChhHHHHHHHHHHH-------cCCCCChhHHHHHHHHHHhcC-----ChHHHHHHHhhCCC-CCcchHHHHHHHHHh
Q 007808 307 RLGALDFSKWVHVYAEY-------NGYQGNVCVGNALIDMYAKCG-----IIENAVDVFNSMDT-KDLITWNTIISGLAM 373 (589)
Q Consensus 307 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~ 373 (589)
...|++.|..+++.+.+ .+ .......+..+|.+.. +.+.|..++..... .++.....+...+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYET 337 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHc
Confidence 44455555555555544 33 2223344455554432 34445555554432 222333333333332
Q ss_pred C---CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh----ccCcHHHHHHHHHHhHH
Q 007808 374 H---GRGAGALSLFHEMKNAGEMPDGITFIGILCACT----HMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 374 ~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~ 424 (589)
. .+...|.++|......|..+ . +..+..+|. ...+...|..++++...
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~~-A--~~~la~~y~~G~gv~r~~~~A~~~~k~aA~ 392 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHIL-A--IYRLALCYELGLGVERNLELAFAYYKKAAE 392 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCChH-H--HHHHHHHHHhCCCcCCCHHHHHHHHHHHHH
Confidence 2 24556666666666665322 1 111222111 22356666666666644
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.7 Score=37.10 Aligned_cols=92 Identities=7% Similarity=-0.090 Sum_probs=55.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHc----cC--CCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 471 LGSCRVYKNVELAELALERLTE----LE--PKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
...+.+...+.+|-..+.+-.. .+ |.--..+...+-+|.-..++..|.+.++.--..+-
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~--------------- 221 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA--------------- 221 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc---------------
Confidence 3556666777777666655433 22 33233466777777888899999999876432221
Q ss_pred eeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 545 MLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 545 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
-..|++...++.|-..| +.++...+..++++.|
T Consensus 222 -----f~~sed~r~lenLL~ay----d~gD~E~~~kvl~sp~ 254 (308)
T KOG1585|consen 222 -----FLKSEDSRSLENLLTAY----DEGDIEEIKKVLSSPT 254 (308)
T ss_pred -----ccChHHHHHHHHHHHHh----ccCCHHHHHHHHcChH
Confidence 25677777777777777 2233445555555543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.038 Score=45.87 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh---HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCch
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYGDLGRW---KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRK 556 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 556 (589)
++.|.+.++.....+|.|+..+...+.++....++ .++.+++++.. . -.+.|+.++|+..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAi----s-------------K~eeAL~I~P~~h 69 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAI----S-------------KFEEALKINPNKH 69 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH----H-------------HHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHH----H-------------HHHHHHhcCCchH
Confidence 56788888888999999999999999998776554 45666666652 0 0122679999999
Q ss_pred HHHHHHHHHHHHccc
Q 007808 557 SIVRAEANMIKLLPQ 571 (589)
Q Consensus 557 ~~~~~l~~~~~~~~~ 571 (589)
.++-.+|++|...+.
T Consensus 70 dAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 70 DALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998887
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.09 Score=43.71 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC----hHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 479 NVELAELALERLTELEPKNPANFVMLSNIYGDLGR----WKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 479 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
-+++|+.-|++++.++|+...++.+++.+|...+. ..+|..+|++..+ --+.|++.+|+
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~-----------------~FqkAv~~~P~ 112 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATE-----------------YFQKAVDEDPN 112 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-----------------HHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-----------------HHHHHHhcCCC
Confidence 35678888888899999999999999999887653 4455555555420 00113478888
Q ss_pred chHHHHHHHHH
Q 007808 555 RKSIVRAEANM 565 (589)
Q Consensus 555 ~~~~~~~l~~~ 565 (589)
|..+...|.-.
T Consensus 113 ne~Y~ksLe~~ 123 (186)
T PF06552_consen 113 NELYRKSLEMA 123 (186)
T ss_dssp -HHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 88877776543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.64 Score=39.35 Aligned_cols=104 Identities=12% Similarity=0.057 Sum_probs=67.5
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQ---IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNV 480 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~ 480 (589)
+...|++++|..-|..++....-.+. ...|..-..++.+.+.++.|++--.+. .+.|.. ..+..-..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 44567777777777766543211111 234555556777888888888766655 455532 2233334578888899
Q ss_pred HHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 481 ELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
++|++-|+++++.+|....+....+++--
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 99999999999999986666666655533
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.98 E-value=1.4 Score=36.87 Aligned_cols=103 Identities=9% Similarity=0.053 Sum_probs=51.4
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCC
Q 007808 85 VVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDER 164 (589)
Q Consensus 85 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 164 (589)
.+.++.+.+.+++|+...+..++..+.+.|.+... .+++..++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 34455556667777777777777777777765433 33444444444433332222221 1222233322222222
Q ss_pred CeehHHHHHHHHHhCCCHHHHHHHHHhCC
Q 007808 165 NVVVWTSMINGYISCGDIVSARCLFELAP 193 (589)
Q Consensus 165 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 193 (589)
=...+..++..+...|++-+|+++.+...
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~ 116 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYH 116 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 12234455566666666666666665543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.56 Score=42.00 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=74.6
Q ss_pred HHHHHhhCC--CCCcchHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC-----------
Q 007808 349 AVDVFNSMD--TKDLITWNTIISGLAMH-----GRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMG----------- 410 (589)
Q Consensus 349 A~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----------- 410 (589)
.++.|..+. ++|-.+|..++..+... +..+-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 45667777777776643 455666677888999999999999999988765532
Q ss_pred -----cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH
Q 007808 411 -----LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA 449 (589)
Q Consensus 411 -----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 449 (589)
+-+-++.++++| +.+|+.||..+-..|++++.+.+..-
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 234577889999 67799999999999999998888643
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.69 E-value=20 Score=42.77 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCC
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 529 (589)
..+|....+.....|.++.|...+-.+.+..+ +.++...+..+...|+...|+.++++......
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 46777777888889999999999988888774 67899999999999999999999998875443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.53 Score=43.07 Aligned_cols=77 Identities=18% Similarity=0.094 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeee
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM 545 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (589)
..+.+-.+|.+.++++.|..+.+.++.+.|+++.-+..-+-+|.+.|.+..|..-++.-.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl-------------------- 242 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV-------------------- 242 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH--------------------
Confidence 345566788999999999999999999999999999999999999999999999888875
Q ss_pred eeccccCCCchHHHHHHHHHH
Q 007808 546 LGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 546 ~~~~~~~p~~~~~~~~l~~~~ 566 (589)
+..|++|.+...-..+.
T Consensus 243 ----~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 243 ----EQCPEDPISEMIRAQIH 259 (269)
T ss_pred ----HhCCCchhHHHHHHHHH
Confidence 67788888877666654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.1 Score=30.72 Aligned_cols=28 Identities=25% Similarity=0.033 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
+|..+...|.+.|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567778888888888888888885543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.1 Score=47.73 Aligned_cols=104 Identities=14% Similarity=0.072 Sum_probs=77.1
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
.+.|.+.|++++|++.|.+. ...| +..++..-..+|.+...+..|+.-...++.++-.-..+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 56788888888888888775 4566 777777777888888888888888888888776555566666666666666666
Q ss_pred HHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHH
Q 007808 517 VARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 566 (589)
|.+-++.+. ++.|++-+.--.++.+-
T Consensus 184 AKkD~E~vL------------------------~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 184 AKKDCETVL------------------------ALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHhHHHHH------------------------hhCcccHHHHHHHHHhc
Confidence 666666654 89999877666666664
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.18 Score=37.23 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=53.9
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHH
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEA 563 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 563 (589)
...+++.++.+|+|......++..+...|++++|++.+-++.+.. .+.++..+-..|=
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d----------------------r~~~~~~ar~~ll 65 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD----------------------RDYEDDAARKRLL 65 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----------------------TTCCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------ccccccHHHHHHH
Confidence 456777888899999999999999999999999999887775222 2234566667777
Q ss_pred HHHHHcccC-CCCcchHhhhhh
Q 007808 564 NMIKLLPQN-NHPLTFIVVIFS 584 (589)
Q Consensus 564 ~~~~~~~~~-~~~~~~~~~~~~ 584 (589)
.++..+|.. |-+.++-..|++
T Consensus 66 ~~f~~lg~~~plv~~~RRkL~~ 87 (90)
T PF14561_consen 66 DIFELLGPGDPLVSEYRRKLAS 87 (90)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHH
Confidence 777777774 345555555543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.35 E-value=2.7 Score=36.76 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=36.6
Q ss_pred HHHHHHHhc-CCHHHHHHHHhhCC-----CCCCHHHHHHHH---HHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 437 CMVDLLARA-GRLAEAVDFVKRMP-----IEADAVIWANLL---GSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 437 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
.+...|..- .++++|+..|+... ...+...-.+++ .--...+++.+|+.+|+++....-+|+
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 345555544 56777777777662 112222222333 223577899999999999887554433
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.53 Score=46.59 Aligned_cols=160 Identities=18% Similarity=0.123 Sum_probs=104.7
Q ss_pred CCCHhHHHHHHHHHhc--cCcHHHHHHHHHHhHHhcCCCCChHHHHH--HHHHHHh-cCCHHHHHHHHhhC-CCCCC--H
Q 007808 393 MPDGITFIGILCACTH--MGLVEEGLSYFQSMAMDYSIVPQIEHYGC--MVDLLAR-AGRLAEAVDFVKRM-PIEAD--A 464 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~-~g~~~~A~~~~~~~-~~~p~--~ 464 (589)
-|+..+...++.-... ....+-+-.++-.| +. |+...|.. +...|.+ .|+...|...+..+ ...|. .
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~ 642 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAI-NK----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD 642 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cC----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc
Confidence 3555555444433221 12233444444444 22 44333332 2344544 68888898888776 33342 2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
...-.|.+...+.|-...|-.++.+.+.+....|-++..++++|....+.+.|++.++...
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~------------------- 703 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQAL------------------- 703 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHH-------------------
Confidence 2334455666777888889999999999887778889999999999999999999988875
Q ss_pred eeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcccCC
Q 007808 545 MLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTFASV 589 (589)
Q Consensus 545 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (589)
+++|+++.+.+.|-.|-. .++-..|++-|.||
T Consensus 704 -----~~~~~~~~~~~~l~~i~c--------~~~~~~~~~~~~sv 735 (886)
T KOG4507|consen 704 -----KLTTKCPECENSLKLIRC--------MQFYPFLYNITSSV 735 (886)
T ss_pred -----hcCCCChhhHHHHHHHHH--------hhhhhHHHhccccc
Confidence 788899999888888754 34555666666655
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.2 Score=43.64 Aligned_cols=86 Identities=15% Similarity=0.105 Sum_probs=68.6
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-PIEADAVI-WANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 517 (589)
+.|....++..|+..|.+. .+.|...+ |..-+-++.+..+++.+.+-..+++++.|+.......++..+.....+++|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 3455667788888877776 56777644 455556677888899999999999999999888889999999999999999
Q ss_pred HHHHHHhh
Q 007808 518 ARIKVAMR 525 (589)
Q Consensus 518 ~~~~~~~~ 525 (589)
+..+.+..
T Consensus 98 I~~Lqra~ 105 (284)
T KOG4642|consen 98 IKVLQRAY 105 (284)
T ss_pred HHHHHHHH
Confidence 99888873
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.19 E-value=6.1 Score=35.41 Aligned_cols=255 Identities=15% Similarity=0.175 Sum_probs=140.3
Q ss_pred cCCHHHHHHHHhhCCC----C---CchhHHHHHHHHHhCCChHHHHHHHHHHHHc---CCC--CCcHHHHHHHHHHHHhc
Q 007808 241 NGDVEECKRLFEEMPE----R---NVFSWNGLIGGYANNGLFFEVLDAFKRMLTE---GRV--FPNDATIVTVLSACARL 308 (589)
Q Consensus 241 ~~~~~~A~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--~p~~~~~~~l~~~~~~~ 308 (589)
....++|+.-|.++.+ . ...+...++..+.+.|++++.+..|.+++.- . + .-+..+.+.++.....+
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA-VTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA-VTRNYSEKSINSILDYISTS 118 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHhhh
Confidence 3456666666665543 1 1233445667777778887777777766431 1 1 12344566666666666
Q ss_pred CChhHHHHHHHHHHHc-----CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---------------CcchHHHHH
Q 007808 309 GALDFSKWVHVYAEYN-----GYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---------------DLITWNTII 368 (589)
Q Consensus 309 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~l~ 368 (589)
.+.+.-..+++.-.+. +-..--.+-..|...|...|++.+..++++++... -...|..-|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666555555433221 11111223345677777778888888877776521 124566778
Q ss_pred HHHHhCCChHHHHHHHHHHHH-CCCCCCHhHHHHHHHHH-----hccCcHHHHHHHHHHhHHhcCC--CCC---hHHHHH
Q 007808 369 SGLAMHGRGAGALSLFHEMKN-AGEMPDGITFIGILCAC-----THMGLVEEGLSYFQSMAMDYSI--VPQ---IEHYGC 437 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~--~~~---~~~~~~ 437 (589)
+.|..+.+..+-..++++... ..-.|.+... .+++-| .+.|++++|..-|-++.+.+.- .|. .--|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLV 277 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLV 277 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHH
Confidence 888888888888888887765 2234554443 344444 4568888886544444343221 122 223556
Q ss_pred HHHHHHhcCC----HHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 438 MVDLLARAGR----LAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 438 l~~~~~~~g~----~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
|.+.+.+.|- ..+|. -....|.......++.+|. .++..+-+++++.-...--++|....
T Consensus 278 LANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpFIRe 341 (440)
T KOG1464|consen 278 LANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPFIRE 341 (440)
T ss_pred HHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhccccccHHHHH
Confidence 6677776652 11110 0124566677778888884 44666555555544432233344333
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.17 E-value=4.9 Score=34.26 Aligned_cols=110 Identities=9% Similarity=0.051 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHCCCCCCHhHHH-----HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHhcCCH
Q 007808 379 GALSLFHEMKNAGEMPDGITFI-----GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG-----CMVDLLARAGRL 448 (589)
Q Consensus 379 ~A~~~~~~m~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~ 448 (589)
+.....+++... +...+|. .+...+...+++++|...++.... .+.| ..+. .|.......|.+
T Consensus 70 ~~~~~~ekf~~~---n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~---~t~D-e~lk~l~~lRLArvq~q~~k~ 142 (207)
T COG2976 70 KSIAAAEKFVQA---NGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA---QTKD-ENLKALAALRLARVQLQQKKA 142 (207)
T ss_pred hhHHHHHHHHhh---ccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cchh-HHHHHHHHHHHHHHHHHhhhH
Confidence 455555666653 2222332 344567788999999988887753 2222 2222 455678889999
Q ss_pred HHHHHHHhhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 449 AEAVDFVKRMPIEA--DAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 449 ~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
++|+..++... .+ .......-...+...|+-++|...|+++++..++
T Consensus 143 D~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 143 DAALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99999998774 22 2223334447788999999999999999988754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.13 E-value=16 Score=40.16 Aligned_cols=135 Identities=14% Similarity=0.098 Sum_probs=62.4
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
.--+.|-+.+|+.++..-.+.-...|.+...-+.+...+++|.-.|+..-+ ....+.+|...|+|.+|..+
T Consensus 917 ~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~ 987 (1265)
T KOG1920|consen 917 YIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSL 987 (1265)
T ss_pred HHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHH
Confidence 333444444444444322222223333344444445555555555543321 12244556666667666666
Q ss_pred HHHhHHhcCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 419 FQSMAMDYSIVPQ--IEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 419 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
..++.. .-+ ..+-..|+.-+...+++-+|-++..+...+|.. .+..+++...+++|.+......
T Consensus 988 a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 988 AAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhcc
Confidence 655521 111 111234555666666766666666665433322 1223334445555555444433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.91 E-value=11 Score=37.40 Aligned_cols=177 Identities=9% Similarity=0.038 Sum_probs=107.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMD--TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILC 404 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 404 (589)
+.+.....+++..+....++.-.+.+..+|. ..+-..|..++++|.++ ..+.-..+|+++.+..+ .|.+.-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 3344455566777776666666666666665 34556777788888877 55777888888877532 23333334444
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC------hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCHHHHHHHHHHH
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYSIVPQ------IEHYGCMVDLLARAGRLAEAVDFVKRMP----IEADAVIWANLLGSC 474 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~ 474 (589)
.|.+ ++.+.+..+|.++... +.|. ...|..|...- ..+.+..+.+..++. ...-...+.-+..-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4444 7777777777777542 2331 12344433311 334555555555542 222334444555667
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 475 RVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
....++.+|++++..+++.+..|.-+...++.-+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 788889999999998888887777777777666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.90 E-value=2.7 Score=35.88 Aligned_cols=96 Identities=9% Similarity=0.019 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH--HH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG--ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG--CM 438 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~l 438 (589)
.+..+..-|++.|+.++|++.|.++.+....|.. ..+..+++.....+++..+...+.++..-.....|....+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555667777777777777777777775444433 2355666777777777777777666633211111111111 11
Q ss_pred --HHHHHhcCCHHHHHHHHhhC
Q 007808 439 --VDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 439 --~~~~~~~g~~~~A~~~~~~~ 458 (589)
.-.+...+++.+|-+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 12234567888877777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.87 E-value=2.5 Score=35.96 Aligned_cols=90 Identities=12% Similarity=0.010 Sum_probs=67.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHH-----HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 438 MVDLLARAGRLAEAVDFVKRMPIEADAVIWANLL-----GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
+...+..+|++++|+.-++...-.|....+..++ ......|.+++|...++...+-.-. +..-..-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcC
Confidence 4567889999999999999774345444444443 5678899999999888776553322 223456689999999
Q ss_pred ChHHHHHHHHHhhhCC
Q 007808 513 RWKDVARIKVAMRDTG 528 (589)
Q Consensus 513 ~~~~A~~~~~~~~~~~ 528 (589)
+.++|..-|++....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999997554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.6 Score=40.85 Aligned_cols=140 Identities=11% Similarity=0.106 Sum_probs=87.0
Q ss_pred cHHHHHHhccC-Cc----hHHHHHHHHHHhCCCCCccchHHHHHHHHc--c----CChhHHHHHhhcCCC-------CCc
Q 007808 4 TTGAHSEQLET-TK----HLHQIQTQVVTSGLEKSDYITPRIITACAQ--L----KQMTYARKMFDKITD-------QNV 65 (589)
Q Consensus 4 ~~~~~~~~~~~-~~----~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~----~~~~~A~~~~~~~~~-------~~~ 65 (589)
++++++..-+. +. ....+++.|.+.|+..+..+|....-.+.. . -....|..+|+.|++ ++-
T Consensus 62 ~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 62 ILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 44455544444 32 236889999999999998877664444443 1 246778889988876 344
Q ss_pred ccHHHHHHHHHcCCCh----hHHHHHHHHhhhCCCCCCcc-cHHHHHHHHhcc-CC--hHHHHHHHHHHHHhCCCCchHH
Q 007808 66 VSWNAMFNGYAQNEFH----RTVVVLFTQMKKLDAMPNCF-TFPIVLKSCVKI-NA--LREGEELHCLVLKNGFRANIFV 137 (589)
Q Consensus 66 ~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~-~~--~~~a~~~~~~~~~~~~~~~~~~ 137 (589)
.++.+++.. ..+++ +.+..+|+.+.+.|...+.. -+.+-+-++... .. ...+.++++.+.+.|+++....
T Consensus 142 ~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 142 YPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred hhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 455566554 33444 44566777787777654443 233333333322 22 3467888999999998888877
Q ss_pred HhHHHHHH
Q 007808 138 GTALIELY 145 (589)
Q Consensus 138 ~~~li~~~ 145 (589)
|..+.-..
T Consensus 220 yp~lGlLa 227 (297)
T PF13170_consen 220 YPTLGLLA 227 (297)
T ss_pred ccHHHHHH
Confidence 77655433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.51 Score=43.01 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
++..++..+...|+.+.+.+.+++.+..+|-+...|..++..|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444556666777788888888888888888788888888888888888888888777754
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.51 E-value=9 Score=35.67 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=11.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 007808 368 ISGLAMHGRGAGALSLFHEMKN 389 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~ 389 (589)
+..+.+.++.+++.+.+.+|..
T Consensus 128 l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 128 LEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHhccCChhHHHHHHHHHHH
Confidence 3444444555555555555554
|
It is also involved in sporulation []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.35 E-value=4.8 Score=34.84 Aligned_cols=157 Identities=15% Similarity=0.099 Sum_probs=79.3
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
+.+||-+.--+...|+++.|.+.|+...+. .|. ..+...-.-++.-.|++.-|.+-+.+.-+.-...|=...|..+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 356777766677777777777777777763 342 22222212223345777777665554433222222233333222
Q ss_pred HHHHhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC-------CcchHHHHHHHhhc
Q 007808 440 DLLARAGRLAEAVDFV-KRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKN-------PANFVMLSNIYGDL 511 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 511 (589)
. +.-++.+|..-+ ++.. ..|...|...+-.+. .|+.. -+.+++++.+-..++ .++|..|+..+...
T Consensus 177 E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 333555555433 3332 223333433332221 11111 112333333322221 45788888888888
Q ss_pred CChHHHHHHHHHhh
Q 007808 512 GRWKDVARIKVAMR 525 (589)
Q Consensus 512 g~~~~A~~~~~~~~ 525 (589)
|+.++|..+++-..
T Consensus 251 G~~~~A~~LfKLai 264 (297)
T COG4785 251 GDLDEATALFKLAV 264 (297)
T ss_pred ccHHHHHHHHHHHH
Confidence 88888888888775
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.45 Score=39.09 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=75.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHH
Q 007808 105 IVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVS 184 (589)
Q Consensus 105 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 184 (589)
.++..+...+.+......++.+...+...+....+.++..|++.++.++..++++.... .-...+++.+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566667778888888888888776666778888888888888888888888874433 233445666666666666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCC
Q 007808 185 ARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGD 243 (589)
Q Consensus 185 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (589)
+.-++.++...+.. +..+...++++.|.+...+. ++...|..++..+...+.
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 66555543321110 00122233344443333322 456677777776665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.12 E-value=3.6 Score=33.93 Aligned_cols=85 Identities=11% Similarity=0.125 Sum_probs=45.8
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHH-HHHHHHHhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHH-hcCCCHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYG-CMVDLLARAGRLAEAVDFVKRMP-IEADAVIWANLLGSC-RVYKNVELA 483 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~-~~~g~~~~A 483 (589)
.+.++.+++..++..+. -+.|...... .-...+.+.|++.+|+.+|+++. ..|....-..|+..| ...|+.+ =
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-W 96 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-H
Confidence 45567777777777774 3445532222 23345677888888888888773 234333334444333 3344432 2
Q ss_pred HHHHHHHHccCC
Q 007808 484 ELALERLTELEP 495 (589)
Q Consensus 484 ~~~~~~~~~~~p 495 (589)
..+-+++++..|
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 233444555554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.0069 Score=50.01 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=44.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHH
Q 007808 301 VLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGA 380 (589)
Q Consensus 301 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 380 (589)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444555556666666666666555455566667777777776665666665553222 2223344445555555555
Q ss_pred HHHHHH
Q 007808 381 LSLFHE 386 (589)
Q Consensus 381 ~~~~~~ 386 (589)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 544443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.05 E-value=6.8 Score=35.66 Aligned_cols=58 Identities=12% Similarity=-0.020 Sum_probs=52.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 468 ANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
......|...|.+.+|.++.++++.++|-+...+..|...|...|+--.|.+-++++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3344778999999999999999999999999999999999999999989998888874
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.01 E-value=33 Score=41.04 Aligned_cols=306 Identities=9% Similarity=0.033 Sum_probs=158.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHhCC----CC--ChhHHHHHHHHHhcCCChHHHHHHhcc-cCCCChhhHHHHHHHHHhcCC
Q 007808 171 SMINGYISCGDIVSARCLFELAP----ER--DVILWNTIVSGYIDVRNMIEARKLFDQ-MPKKDVISWNTMLSGYANNGD 243 (589)
Q Consensus 171 ~l~~~~~~~g~~~~a~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 243 (589)
.+..+-.+.+.+.+|+..++.-. +. ....+..+...|...+++|+..-+... ...|+ ....+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 56667778899999999998832 11 223344445588999999888777763 32232 2234455667899
Q ss_pred HHHHHHHHhhCCC--CC-chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHH-HHHHHHhcCChhHHHHHHH
Q 007808 244 VEECKRLFEEMPE--RN-VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVT-VLSACARLGALDFSKWVHV 319 (589)
Q Consensus 244 ~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~ 319 (589)
+..|...|+.+.+ |+ ...++.++......|.++..+-..+-..... .+....++. -+.+.-+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 9999999999987 33 5678888888888888888877666555432 233333332 2344466677776666554
Q ss_pred HHHHcCCCCChhHHHH--HHHHHHhcCC---hH--HHHHHHhhCC-CC---------CcchHHHHHHHHHhCCChHHHHH
Q 007808 320 YAEYNGYQGNVCVGNA--LIDMYAKCGI---IE--NAVDVFNSMD-TK---------DLITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 320 ~~~~~~~~~~~~~~~~--l~~~~~~~g~---~~--~A~~~~~~~~-~~---------~~~~~~~l~~~~~~~~~~~~A~~ 382 (589)
+.+ ...|.. ++....+..+ +. +.++..++.. .+ -...|..++....-..--.
T Consensus 1543 ---~~n----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~---- 1611 (2382)
T KOG0890|consen 1543 ---DRN----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELEN---- 1611 (2382)
T ss_pred ---ccc----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHH----
Confidence 111 111111 2222222111 10 0111111110 00 0123333433322211100
Q ss_pred HHHHHHHCCCCCCHhH------HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHH
Q 007808 383 LFHEMKNAGEMPDGIT------FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-----IEHYGCMVDLLARAGRLAEA 451 (589)
Q Consensus 383 ~~~~m~~~~~~p~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A 451 (589)
..+.. .++.++..+ |..-+..-....+..+-+--+++........|+ ..+|....+..-+.|+++.|
T Consensus 1612 ~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1612 SIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 00101 112332211 111111100001111111111111111111222 46788888888889999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 007808 452 VDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELE 494 (589)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (589)
...+-++...--+..+--....+.+.|+...|..++++.++..
T Consensus 1690 ~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1690 QNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8877666311123344445577788999999999999999743
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.98 E-value=6.6 Score=32.90 Aligned_cols=47 Identities=9% Similarity=-0.055 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCe
Q 007808 120 EELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNV 166 (589)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 166 (589)
.+..+.+.+.+++|+...+..+++.+.+.|++..-.+++.--.-+|.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DS 60 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDS 60 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCc
Confidence 34555666778899999999999999999998888777765443433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.14 Score=29.14 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.4
Q ss_pred chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 500 NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 500 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++..++.++.+.|++++|.+.++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 46788999999999999999999986
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.19 Score=28.94 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=24.6
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+|..++.+|...|++++|.+.+++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 367899999999999999999999985
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.36 Score=29.29 Aligned_cols=27 Identities=30% Similarity=0.156 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
+++.+...|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555556666666666666666554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=3.5 Score=40.10 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=35.2
Q ss_pred HhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHH
Q 007808 443 ARAGRLAEAVDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
...|+++.+...+.... +.....+..+++......|++++|....+.++...-.+++.....+..-...|-++++...
T Consensus 334 ~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~ 413 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY 413 (831)
T ss_pred HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHH
Confidence 34444444444444331 2223334444444444444444444444444443333333333333333334444444444
Q ss_pred HHHhh
Q 007808 521 KVAMR 525 (589)
Q Consensus 521 ~~~~~ 525 (589)
++++.
T Consensus 414 wk~~~ 418 (831)
T PRK15180 414 WKRVL 418 (831)
T ss_pred HHHHh
Confidence 44443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.42 Score=41.66 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=64.2
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChH-HHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHH-HHHhcCCCHH
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYSIVPQIE-HYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLL-GSCRVYKNVE 481 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~ 481 (589)
.|.....++.|+..|.+.+ .+.|+.. -|..=+-.+.+..+++.+..--.+. .+.|+...-...+ .++.....++
T Consensus 19 k~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 4666778999999887776 5568764 4556677888899999887655544 6778766554444 6678888999
Q ss_pred HHHHHHHHHHcc
Q 007808 482 LAELALERLTEL 493 (589)
Q Consensus 482 ~A~~~~~~~~~~ 493 (589)
+|+..+.++..+
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 999999999663
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.60 E-value=7 Score=35.05 Aligned_cols=181 Identities=9% Similarity=0.032 Sum_probs=110.7
Q ss_pred CChHHHHHHHhhCCC----C---CcchHHHHHHHHHhCCChHHHHHHHHHHHH---CCCC--CCHhHHHHHHHHHhccCc
Q 007808 344 GIIENAVDVFNSMDT----K---DLITWNTIISGLAMHGRGAGALSLFHEMKN---AGEM--PDGITFIGILCACTHMGL 411 (589)
Q Consensus 344 g~~~~A~~~~~~~~~----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~~~~--p~~~~~~~l~~~~~~~g~ 411 (589)
.++++|+.-|+++.+ . .......++..+.+.+++++.++.+.+|.. +.+. -+..+.++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 356666666665542 1 223445577788888888888888888753 1121 244567777776666666
Q ss_pred HHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC-----------CCC---CHHHHHHHHHH
Q 007808 412 VEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP-----------IEA---DAVIWANLLGS 473 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~p---~~~~~~~l~~~ 473 (589)
.+--.++|+.-+....-..+ ..+-..|...|...|.+.+-.++++++. .+. -...|..-++.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 65555555443221111112 2233457788888888888888887761 000 12456666688
Q ss_pred HhcCCCHHHHHHHHHHHHccCCC--CCcch----HHHHHHHhhcCChHHHHHHHHHh
Q 007808 474 CRVYKNVELAELALERLTELEPK--NPANF----VMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~--~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
|..+.+-.+-..+|++++.+... +|... .+=+.+..+.|+|++|..-|=+.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 88888888888999999876522 23322 23345577889999987754333
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.30 E-value=12 Score=34.75 Aligned_cols=99 Identities=9% Similarity=-0.048 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHH
Q 007808 297 TIVTVLSACARLGALD---FSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISG 370 (589)
Q Consensus 297 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 370 (589)
++..++.++...+..+ +|..+++.+... .+..+.++..-+..+.+.++.+.+.+++.+|... ....+...+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 4556666666666544 344455555333 2333444545566666677788888888777632 23445554444
Q ss_pred HHh--CCChHHHHHHHHHHHHCCCCCCH
Q 007808 371 LAM--HGRGAGALSLFHEMKNAGEMPDG 396 (589)
Q Consensus 371 ~~~--~~~~~~A~~~~~~m~~~~~~p~~ 396 (589)
+.. ......|...+..+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 421 23345566666666654455544
|
It is also involved in sporulation []. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.37 Score=46.65 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=62.4
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCCCHHHHH-HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEADAVIWA-NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
++.+.+.+.++.|+.++.++ ...|+-..|- .-..++.+.+++..|+.-+.++++++|....+|..-+.++.+.+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 34455667777777777776 4566544332 233667778888888888888888888877788888888888888888
Q ss_pred HHHHHHHhh
Q 007808 517 VARIKVAMR 525 (589)
Q Consensus 517 A~~~~~~~~ 525 (589)
|...++...
T Consensus 91 A~~~l~~~~ 99 (476)
T KOG0376|consen 91 ALLDLEKVK 99 (476)
T ss_pred HHHHHHHhh
Confidence 888777765
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.3 Score=38.86 Aligned_cols=87 Identities=9% Similarity=-0.038 Sum_probs=65.2
Q ss_pred HHHHHhcCCHHHHHHHHhhC---------CCCCCH-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 439 VDLLARAGRLAEAVDFVKRM---------PIEADA-----------VIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~---------~~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
.+-+.+.|++.+|..-|.++ ..+|.. ..+..+.+++...|++-++++....++...|+|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 34455666666666555543 133422 2333444677788999999999999999999999
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+|+.-+.+....=+.++|.+-+.++.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 999999999998889999999888885
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.51 E-value=2.2 Score=36.85 Aligned_cols=58 Identities=21% Similarity=0.155 Sum_probs=29.8
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+..+.+.+...+|+...+.- .-+| |...-..+++.++-.|++++|..-++-+-++.|.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 34455555566655554432 3333 2233333445555666666666666665555554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.35 Score=25.89 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=18.2
Q ss_pred cchHHHHHHHhhcCChHHHHHHHH
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKV 522 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~ 522 (589)
.+...++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677888888888888887765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.52 Score=42.66 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=36.1
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 475 RVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.+.|+.++|..+|+.++.+.|+++.++..++......++.-+|-.+|-+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 46677777777777777777777777777777776666666676666555
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=90.09 E-value=12 Score=36.32 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=51.2
Q ss_pred CHHHHHHHH---HHHhcCCCHHHHHHHHHHHHccCCC-CCcchHHHHHHHh-hcCChHHHHHHHHHhh
Q 007808 463 DAVIWANLL---GSCRVYKNVELAELALERLTELEPK-NPANFVMLSNIYG-DLGRWKDVARIKVAMR 525 (589)
Q Consensus 463 ~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 525 (589)
|...|.++. ..+.+.|-+..|.+..+-++.++|. ||-.....++.|. ++++++--+++.+...
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 444554444 6788999999999999999999998 8887777787766 6888988888888764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.03 E-value=13 Score=32.81 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=28.6
Q ss_pred HhcCCHHHHHHHHhhCC---CCCCHHHHH---HHH-HH-H-hcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 443 ARAGRLAEAVDFVKRMP---IEADAVIWA---NLL-GS-C-RVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~~---~~p~~~~~~---~l~-~~-~-~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
...+++.+|+++|++.. ...+..-|. .++ .+ | ....+.-.+...+++-.+++|.-..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 45566667777766652 111111111 111 11 1 2235666677777777777776443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.92 E-value=3.4 Score=37.85 Aligned_cols=76 Identities=12% Similarity=0.190 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHHHHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM----DYSIVPQIEHYGCMV 439 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~ 439 (589)
+..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ +.|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3444555555555555555555555531 22455555555555555555555555554422 345555555544433
Q ss_pred H
Q 007808 440 D 440 (589)
Q Consensus 440 ~ 440 (589)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.81 E-value=15 Score=33.10 Aligned_cols=123 Identities=7% Similarity=0.050 Sum_probs=88.6
Q ss_pred HHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHH-HHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 448 LAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVE-LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 448 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
..+=++.++++ . .+.+...|+.--......|++. .-+++.+.++..+..|-.++..--+++...+.|++-+.+..+|
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44445566655 2 3335666665555555566666 7788889999988888889999999999999999999999999
Q ss_pred hhCCCccCCccc-----eeeeCCeeeee-----------ccccCCCchHHHHHHHHHHHH-cc
Q 007808 525 RDTGFKKLPGCS-----SIEVNEVVMLG-----------CLSRELDRKSIVRAEANMIKL-LP 570 (589)
Q Consensus 525 ~~~~~~~~~~~~-----~~~~~~~~~~~-----------~~~~~p~~~~~~~~l~~~~~~-~~ 570 (589)
.+.++..+..+. +..-.+.+... .+.+-|+|.+++..|..++.. .|
T Consensus 174 le~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 174 LEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 888888777653 12222332211 678999999999999999975 44
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.45 E-value=4.8 Score=34.64 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=54.4
Q ss_pred hcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC----CCcchHHHHHHHhhcCChHHH
Q 007808 444 RAGRLAEAVDFVKRMPIEA--DAVIWANLLGSCRVYKNVELAELALERLTELEPK----NPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A 517 (589)
..-.-++|.+.|-.+.-.| +.......+..|....|.++++.++-+++++.+. |++.+..|+.++.+.|+++.|
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444567888887774333 2233333445555677999999999999995432 588999999999999999988
Q ss_pred H
Q 007808 518 A 518 (589)
Q Consensus 518 ~ 518 (589)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.45 E-value=2.8 Score=31.30 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 379 GALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 379 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
+...-+..+....+.|++......+.+|.+.+++..|.++++.+..+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 566667777778889999999999999999999999999999987665533 336776664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.41 E-value=5.4 Score=34.06 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcH--HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 261 SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPND--ATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
.+..+...|++.|+.++|++.|.++.+.. ..+.. ..+..+++.....+++..+.....++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666777777777777777777776654 33332 2455666666677777777666665544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.53 Score=26.67 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
.+..++.+.|++++|.+.|+++++..|++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 45567778889999999999998888863
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.19 E-value=25 Score=34.95 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=79.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007808 262 WNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYA 341 (589)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (589)
.-+++..+.....+.-...+..+|+.-| -+...|..++.+|... ..+.-..+++++.+..+. ++..-..|...|.
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 3445555555555555666666666644 4555566666666555 444555566666555432 2222233333333
Q ss_pred hcCChHHHHHHHhhCCCC------Cc---chHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHhccCc
Q 007808 342 KCGIIENAVDVFNSMDTK------DL---ITWNTIISGLAMHGRGAGALSLFHEMKN-AGEMPDGITFIGILCACTHMGL 411 (589)
Q Consensus 342 ~~g~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~ 411 (589)
+ ++.+.+...|.++..+ +. ..|..+...- ..+.+..+.+..+... .|..--...+..+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 3 5555555555544311 11 1233332211 2345555555555544 2322333445555566777777
Q ss_pred HHHHHHHHHHhHH
Q 007808 412 VEEGLSYFQSMAM 424 (589)
Q Consensus 412 ~~~A~~~~~~~~~ 424 (589)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 8888877776654
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=89.14 E-value=42 Score=37.48 Aligned_cols=259 Identities=14% Similarity=0.002 Sum_probs=135.3
Q ss_pred HHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHH-HHHHHHhhCCCCCchhHHHH
Q 007808 187 CLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVE-ECKRLFEEMPERNVFSWNGL 265 (589)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~l 265 (589)
.+.+.+.++|+..-...+..+.+.+..+-...+...+..++..+....+.++.+.+... ....+...+..+|...-...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 44444556666666666666666665443344444444455555555555554442211 11112222233455444444
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
+..+...+..+ .. .+-.+++ .+|...-...+.++.+.+..+. +..+. ..++..+-...+.++...+.
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~----D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG----DPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc----CCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhcc
Confidence 55554433211 11 2222332 2444444555555555544322 11111 24456666666667766665
Q ss_pred hHH-HHH-HHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007808 346 IEN-AVD-VFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 346 ~~~-A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 423 (589)
.+. +.. +..-+..++...-...+.++...|....+...+..+.. .++...-...+.++...+.. ++...+..+.
T Consensus 772 ~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L 847 (897)
T PRK13800 772 GGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPALVEAL 847 (897)
T ss_pred ccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHHHHHh
Confidence 432 223 33334567777778888888888876655555555554 45655666667777776653 4555555554
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHH
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVI 466 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 466 (589)
. .|+...-...+.++.+.+....+...+..+..++|...
T Consensus 848 ~----D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~V 886 (897)
T PRK13800 848 T----DPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADV 886 (897)
T ss_pred c----CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHH
Confidence 4 36666666677777775444566666666543555543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.07 E-value=2.4 Score=38.83 Aligned_cols=48 Identities=13% Similarity=0.074 Sum_probs=25.5
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCC
Q 007808 115 ALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMD 162 (589)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 162 (589)
++++++.++..=+.-|+-||.++++.+|+.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555544443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.71 E-value=19 Score=33.81 Aligned_cols=64 Identities=14% Similarity=0.164 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHCCCCCCHh-HH-HHHHHHHhccCc--HHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007808 378 AGALSLFHEMKNAGEMPDGI-TF-IGILCACTHMGL--VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLL 442 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p~~~-~~-~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (589)
+.+..+|+.+.+.|+..+.. .+ ..++..+..... ..++.++++.+. +.++++....|..++-.-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHHHH
Confidence 45677888888877776432 33 333333322222 346777777774 448888877777655433
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.41 E-value=4.3 Score=29.99 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.+..+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456677777778888999999999999999999999999999988654433 4446666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.29 E-value=0.94 Score=39.32 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=48.3
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
...+.++.+.|.+.|.+++++-|.....|..++..-.++|+++.|.+.|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999886
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.98 E-value=11 Score=38.11 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=72.6
Q ss_pred cCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHh
Q 007808 343 CGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSM 422 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 422 (589)
.|+++.|..++..+.++ ..+.++.-+.++|-.++|+++- ..|+. -|. ...+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rFe----lal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQ-RFE----LALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhh-hhh----hhhhcCcHHHHHHHHHhh
Confidence 45555555544444421 2233444445555555554431 12221 121 123456666666665444
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 423 AMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
.+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+.-..+-..+.+....|
T Consensus 664 -------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N----- 725 (794)
T KOG0276|consen 664 -------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN----- 725 (794)
T ss_pred -------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc-----
Confidence 234456677777777777777777766653 13334444445555443333333333332222
Q ss_pred HHHHHHhhcCChHHHHHHHHHh
Q 007808 503 MLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 503 ~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
..-.+|...|+++++.+++.+-
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHhc
Confidence 2223455566666666655443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.95 E-value=1.2 Score=28.85 Aligned_cols=32 Identities=25% Similarity=0.157 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPAN 500 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 500 (589)
.+.-++.+.|++++|.+..+.+++++|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567889999999999999999999987643
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.90 E-value=1.4 Score=43.73 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=76.9
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
...|+...|...+..+........++ ....|.+.+.+.|...+|-.++.+. . ....+.++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v-~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDV-PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcc-cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 45688999999888775432222222 3445777888888888998887765 2 2345567777889999999999999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHh
Q 007808 485 LALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
+.++.+..++|+++.+-..|..+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999988888777655
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.88 E-value=18 Score=31.59 Aligned_cols=178 Identities=12% Similarity=-0.004 Sum_probs=101.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcc-hHHHHHH--HHHhCCChHHHHHHH
Q 007808 308 LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLI-TWNTIIS--GLAMHGRGAGALSLF 384 (589)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~ 384 (589)
.|-+..|..=|.+..... |.-+.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+=. ++.-.|++.-|.+-+
T Consensus 78 lGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHH
Confidence 344444444444444432 345678998988899999999999999988866553 2222222 233468898888877
Q ss_pred HHHHHCCCCCCH--hHHHHHHHHHhccCcHHHHHHHH-HHhHHhcCCCCChHHHHHHHH-HHHhcCCHHHHHHHHhhCCC
Q 007808 385 HEMKNAGEMPDG--ITFIGILCACTHMGLVEEGLSYF-QSMAMDYSIVPQIEHYGCMVD-LLARAGRLAEAVDFVKRMPI 460 (589)
Q Consensus 385 ~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~ 460 (589)
.+.-+.. +.|+ ..|..+. ...-++.+|..-+ ++. + + .|..-|...+- .|...=..+.+.+-...-..
T Consensus 157 ~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~-~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~ 227 (297)
T COG4785 157 LAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRA-E--K--SDKEQWGWNIVEFYLGKISEETLMERLKADAT 227 (297)
T ss_pred HHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHH-H--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhcc
Confidence 7766642 1122 2232222 2334566665433 333 2 2 44445554333 33222222233332222211
Q ss_pred CC------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 461 EA------DAVIWANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 461 ~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
+. -..||-.+..-+...|+.++|..+|+-++..+-
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 11 134566677888899999999999999987553
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.70 E-value=0.8 Score=27.69 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.5
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++..|+.+|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 367899999999999999999999885
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.50 E-value=1.1 Score=24.61 Aligned_cols=30 Identities=23% Similarity=0.164 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 467 WANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+..+...+...|+++.|...+++++++.|.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 334445555556666666666666555553
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.16 E-value=34 Score=34.04 Aligned_cols=66 Identities=17% Similarity=0.096 Sum_probs=34.1
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccC-ChHHHHHHHHHHHHhC
Q 007808 64 NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKIN-ALREGEELHCLVLKNG 130 (589)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~ 130 (589)
|+..|..-+.-+-+.+.+.+.-.+|.+|.... +.++..|..........+ +.+.|..+|...++.+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 55556666665555555666666666665542 223333333322222222 2666666666665543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.83 E-value=17 Score=30.39 Aligned_cols=122 Identities=15% Similarity=0.104 Sum_probs=72.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH--HHHHHHhcCC
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGI-TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGC--MVDLLARAGR 447 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~ 447 (589)
+.+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|.++-....++.-..-... -...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345677788888888888765433221 1222334456778888888888888654322211111111 1234567788
Q ss_pred HHHHHHHHhhCC--CCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 448 LAEAVDFVKRMP--IEAD-AVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 448 ~~~A~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
+++...-.+.+. ..|- ...-..|.-+-.+.|++..|...|.++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888777777663 2232 22334455566688888888888888776
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.61 E-value=4 Score=30.13 Aligned_cols=63 Identities=10% Similarity=0.089 Sum_probs=46.7
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+.-++.+-++.+...+..|++....+.+++|.|.+|+..|.++++-..... ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 444566777788878889999999999999999999999999998776432 223445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.86 E-value=6.4 Score=36.18 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=70.7
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-CCc-----chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh
Q 007808 324 NGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT-KDL-----ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI 397 (589)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 397 (589)
.|.+.+..+...++..-....+++.++..+-++.. |+. .+-.+.+..+ -.-++++++.++..=+.-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 34455555566666666667788888887776653 211 1112223322 2346778999988888899999999
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
+++.+++.+.+.+++.+|.++...+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999888777553
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.27 E-value=54 Score=34.66 Aligned_cols=70 Identities=9% Similarity=-0.066 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC-------hHHHHHHHHHHHHhCCCCchH
Q 007808 66 VSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINA-------LREGEELHCLVLKNGFRANIF 136 (589)
Q Consensus 66 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~ 136 (589)
..--++|--|.+.|++++|.++....... .......|...+..+....+ -+....-|++..+...+.|++
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33447788889999999999999666543 45566778888888876533 234555666665554333443
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.90 E-value=0.82 Score=42.28 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=44.0
Q ss_pred hcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHH
Q 007808 444 RAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIK 521 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 521 (589)
..|.+++|++.+... ...|. ...|..-.+++.+.+....|++-+..+++++|+...-|-.-+.+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 344455555555544 23332 2233333345555555555666666666666655555555555555555665555555
Q ss_pred HHhhhCC
Q 007808 522 VAMRDTG 528 (589)
Q Consensus 522 ~~~~~~~ 528 (589)
....+.+
T Consensus 206 ~~a~kld 212 (377)
T KOG1308|consen 206 ALACKLD 212 (377)
T ss_pred HHHHhcc
Confidence 5554433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.89 E-value=4.1 Score=30.45 Aligned_cols=61 Identities=8% Similarity=0.087 Sum_probs=41.2
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 82 RTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 82 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
-+..+-++.+...++.|++....+.+++|.|.+++..|.++++-+...- .+....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 3556667777777888899999999999999999999999988876642 333336665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.69 E-value=60 Score=34.63 Aligned_cols=180 Identities=11% Similarity=0.037 Sum_probs=120.5
Q ss_pred ccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHH----HHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 007808 34 DYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAM----FNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKS 109 (589)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 109 (589)
......-+..+.+..-++.|..+-+.-.. +..+-..+ .+-+.+.|++++|...|-+-... +.| ..++.-
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34455677888888888888888765433 22222233 33456789999999988776532 233 234555
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCee-hHHHHHHHHHhCCCHHHHHHH
Q 007808 110 CVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVV-VWTSMINGYISCGDIVSARCL 188 (589)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~ 188 (589)
+....+...-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+...+.... -....+..+.+.+-.++|..+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 65666666777788888888865 4455577999999999999999988887732211 245667777777777777766
Q ss_pred HHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCC
Q 007808 189 FELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPK 225 (589)
Q Consensus 189 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 225 (589)
-..... .......+ +-..+++++|.+.+..+.-
T Consensus 486 A~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 486 ATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 655443 23332222 3467889999999988763
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=84.65 E-value=59 Score=34.54 Aligned_cols=435 Identities=7% Similarity=-0.077 Sum_probs=197.4
Q ss_pred HHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCchHHHhHHHHHHHcCCChHH
Q 007808 75 YAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGF-RANIFVGTALIELYSTGKAIEA 153 (589)
Q Consensus 75 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~ 153 (589)
..+.|++..+.++...+...-. ..-..|..+...+. ....+ ++-..+.+..- +.....-......+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~-~~~~~---ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLM-NQPAV---QVTNFIRANPTLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhccc-cCCHH---HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHH
Confidence 4567788888777777642211 11222333322211 11233 33333333322 2233344445556667788888
Q ss_pred HHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCC---CCChhHHHHHHHHHhcCCChHHHHHHhcccC----CC
Q 007808 154 AYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAP---ERDVILWNTIVSGYIDVRNMIEARKLFDQMP----KK 226 (589)
Q Consensus 154 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~ 226 (589)
..+++..- ..+.........+....|+.++|....+.+= ...+.....++..+.+.|...... ++.++. ..
T Consensus 118 ~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~ 195 (644)
T PRK11619 118 LLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAG 195 (644)
T ss_pred HHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCC
Confidence 88744332 3455555667777888888776665555431 224566677777766555433221 111111 11
Q ss_pred ChhhH---------------HHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHH--HhCCChHHHHHHHHHHHHcC
Q 007808 227 DVISW---------------NTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGY--ANNGLFFEVLDAFKRMLTEG 289 (589)
Q Consensus 227 ~~~~~---------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~ 289 (589)
+...- ..++..+ .+...+...+.... ++...-..++.++ ....+.+.|..++.......
T Consensus 196 ~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~ 271 (644)
T PRK11619 196 NTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQ 271 (644)
T ss_pred CHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhc
Confidence 11111 1111111 11222222222211 1111111111111 12344566777776654443
Q ss_pred CCCCcHH--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchH
Q 007808 290 RVFPNDA--TIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITW 364 (589)
Q Consensus 290 ~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 364 (589)
...+... ....+.......+..+.+...+....... .+......-+..-.+.++++.+...+..|... ...-.
T Consensus 272 ~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~ 349 (644)
T PRK11619 272 KLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 349 (644)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhH
Confidence 2222221 12222222222211334444444332221 23334444455555677777777777776521 22223
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHH-HHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007808 365 NTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEG-LSYFQSMAMDYSIVPQIEHYGCMVDLLA 443 (589)
Q Consensus 365 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 443 (589)
.=+..++...|+.++|...|+++.. ..+ -|..|... +.|..-.- ......-.. .+..++ -..-+..+.
T Consensus 350 YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~~~~~~~~~~~~--~~~~~~--~~~ra~~L~ 418 (644)
T PRK11619 350 YWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQ--RLGEEYPLKIDKAPKPDS--ALTQGP--EMARVRELM 418 (644)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHH--HcCCCCCCCCCCCCchhh--hhccCh--HHHHHHHHH
Confidence 3345555567777777777777632 111 22222211 11211000 000000000 000000 112345667
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC---CCCCcchHHHHHHHhhcCChHHHHHH
Q 007808 444 RAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELE---PKNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
..|+..+|...+..+....+......+.....+.|.++.++....+....+ -.-|..|...+..+.+.-..+.++-.
T Consensus 419 ~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ 498 (644)
T PRK11619 419 YWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAM 498 (644)
T ss_pred HCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHH
Confidence 788888888888776333455555556566678888888887776543311 11233566666666665566655543
Q ss_pred HHHhhhCCCccCC
Q 007808 521 KVAMRDTGFKKLP 533 (589)
Q Consensus 521 ~~~~~~~~~~~~~ 533 (589)
----.++++.|..
T Consensus 499 ai~rqES~f~p~a 511 (644)
T PRK11619 499 AIARQESAWNPKA 511 (644)
T ss_pred HHHHHhcCCCCCC
Confidence 2222355666653
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.53 E-value=9.1 Score=35.60 Aligned_cols=125 Identities=14% Similarity=0.046 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhC--C--CCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHH
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRM--P--IEAD--AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
+|.-=++-|.+.+++..|...|.+. . -.|| ...|+.-..+-...|++..|+.-..+++.++|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444467788999999999999876 1 2343 45566666666788999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHH
Q 007808 508 YGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKL 568 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 568 (589)
+....++++|....++...-..+ .+.+...+-..+|+++.++.....+-.+
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~e----------~K~~~~l~~l~~k~~~~~L~~er~~rK~ 213 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDDE----------AKKAIELRNLIHKNDKLKLIEERDVRKK 213 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHH----------HHHHHHHHhhcCcchHHHHHHHHHHHHH
Confidence 99999999999887766311110 0111111223689999999888777543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.74 E-value=1.8 Score=23.68 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=24.3
Q ss_pred cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..+..++.++...|++++|...+++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467889999999999999999998875
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.70 E-value=7.2 Score=31.68 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=38.7
Q ss_pred hHHHHHHHH---HhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 397 ITFIGILCA---CTHMGLVEEGLSYFQSMAMDYSIVPQ---IEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 397 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
...+.|+.. -...++.+++..++..+. .+.|+ ..++ -...+...|++++|+++|++..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMF--DGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhh
Confidence 334444443 345788888888888885 44555 3333 3455778899999999998884
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.45 E-value=19 Score=36.56 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=20.6
Q ss_pred hcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 007808 240 NNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRM 285 (589)
Q Consensus 240 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (589)
+.|+++.|.++..+.. +..-|..|.++....|++..|.+-|...
T Consensus 649 ~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4445555444433322 2334555555555555555555544443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.10 E-value=69 Score=33.42 Aligned_cols=243 Identities=11% Similarity=0.044 Sum_probs=121.7
Q ss_pred hCCChHHHHHHHHHHHH-------cCCCCCcHHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007808 271 NNGLFFEVLDAFKRMLT-------EGRVFPNDATIVTVLSACARLG-----ALDFSKWVHVYAEYNGYQGNVCVGNALID 338 (589)
Q Consensus 271 ~~g~~~~A~~~~~~~~~-------~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (589)
...+.+.|+..|+.+.+ .+ . ......+..+|.+.. +.+.|..++.+..+.|.+ +.... +..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~-~---~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG-L---PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc-C---CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHH
Confidence 44556666666666655 33 1 112333444444422 445566666666666532 22222 222
Q ss_pred HHHhc---CChHHHHHHHhhCCCC-CcchHHHHHHHHH----hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC
Q 007808 339 MYAKC---GIIENAVDVFNSMDTK-DLITWNTIISGLA----MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMG 410 (589)
Q Consensus 339 ~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 410 (589)
.|... .+...|.+.|...... .+..+..+..+|. ...+.+.|..++++..+.| .|...--...+..+.. +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-G 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-c
Confidence 22222 2455666666665533 2233333333222 2346677888888887776 3332222223333333 5
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHH---HHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhc----CCC
Q 007808 411 LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL---LAR----AGRLAEAVDFVKRMPIEADAVIWANLLGSCRV----YKN 479 (589)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 479 (589)
.++.+.-.+..+.. .+.+--...-..+... ... ..+.+.+...+.+....-+......+...|.. ..+
T Consensus 412 ~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 412 RYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRD 490 (552)
T ss_pred cccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCC
Confidence 55555544444422 1221111100011111 111 22455666667666444455555555554432 346
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHhhc-C--ChHHHHHHHHHhhh
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYGDL-G--RWKDVARIKVAMRD 526 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~ 526 (589)
++.|...|.++.... .....+++.++... | .+..|.+++++...
T Consensus 491 ~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred hHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 888888888887766 66777888887652 2 26788888887753
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=81.70 E-value=12 Score=36.63 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=41.6
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 483 (589)
+...|+++.+.+.+...-. -+-....+..+++....+.|++++|...-+-| +. -.+..............|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 3455666666655544422 22233444555555555666666666555544 10 01112111112222344555666
Q ss_pred HHHHHHHHccCCC
Q 007808 484 ELALERLTELEPK 496 (589)
Q Consensus 484 ~~~~~~~~~~~p~ 496 (589)
...|++++.++|.
T Consensus 411 ~~~wk~~~~~~~~ 423 (831)
T PRK15180 411 YHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccCCh
Confidence 6666666665543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=81.08 E-value=1e+02 Score=34.61 Aligned_cols=254 Identities=11% Similarity=-0.028 Sum_probs=142.7
Q ss_pred HHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChH-HHHHHhcccCCCChhhHHH
Q 007808 155 YKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMI-EARKLFDQMPKKDVISWNT 233 (589)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~ 233 (589)
..+...+..++.......+..+.+.+..+....+.+.+.++|...-...+.++.+.+... ....+...+..+|..+...
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~ 703 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAA 703 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHH
Confidence 344444556677777777777777766554444444555555555555555554443211 1112222223366666666
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhH
Q 007808 234 MLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDF 313 (589)
Q Consensus 234 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 313 (589)
.+..+...+.-+ ...+...+..+|...-...+.++...+..+. +..... .++...-.....++...+..+.
T Consensus 704 A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~----D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 704 ALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT----DENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred HHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc----CCCHHHHHHHHHHHHHhccccc
Confidence 666665543211 2234445555666665566666666554322 222222 3555555666666666665432
Q ss_pred -HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH-HHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007808 314 -SKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAV-DVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAG 391 (589)
Q Consensus 314 -a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 391 (589)
+...+..+.+ .++..+-...+.++...|..+.+. .+...+..++..+-...+.++...+. +++...+..+.+
T Consensus 775 ~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-- 848 (897)
T PRK13800 775 PAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-- 848 (897)
T ss_pred hhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc--
Confidence 2333444333 346777778888888888765553 34445556676667777777777765 456666666664
Q ss_pred CCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007808 392 EMPDGITFIGILCACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 392 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 424 (589)
.|+...-...+.++.+.+....+...+..+..
T Consensus 849 -D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 -DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred -CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66776666777777775434456666666654
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=80.85 E-value=8.1 Score=34.16 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCHH-------HHHHHHHHHHccC--CC----CCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 466 IWANLLGSCRVYKNVE-------LAELALERLTELE--PK----NPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
.+..+.+.|...|+.+ .|.+.|+++.+.. |. .......+|.+..+.|++++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444556677777744 4555555555433 22 23467788999999999999999999996433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.36 E-value=3.7 Score=21.81 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=10.2
Q ss_pred HHHHHHHhcCCHHHHHHHHh
Q 007808 437 CMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~ 456 (589)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.21 E-value=3 Score=29.44 Aligned_cols=46 Identities=9% Similarity=0.053 Sum_probs=34.8
Q ss_pred hcCCCHHHHHHHHHHHHccCCCCCc---chHHHHHHHhhcCChHHHHHH
Q 007808 475 RVYKNVELAELALERLTELEPKNPA---NFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 475 ~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~ 520 (589)
..+.+.++|+..|+++++..++.+. ++-.|+.+|+..|++++++++
T Consensus 17 Y~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 17 YHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred hccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888999999999987766554 344556678888998888875
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.20 E-value=85 Score=33.27 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHccC---CCCC-cch-----HHHHHHHhhcCChHHHHHHHHHh
Q 007808 477 YKNVELAELALERLTELE---PKNP-ANF-----VMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~---p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.|+..+..+....+..+. |+.. ..| ..+.+.+...|+.++|.....+.
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 778877777766666533 2212 233 24445588889999998887665
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 62.5 bits (150), Expect = 3e-10
Identities = 21/161 (13%), Positives = 43/161 (26%), Gaps = 7/161 (4%)
Query: 293 PNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDV 352
P + + +L +LD + G A + A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 353 FNSMDTK-------DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA 405
+ L +N ++ G A G + + +K+AG PD +++ L
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG 446
+ + Q ++ RA
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.1 bits (128), Expect = 1e-07
Identities = 20/167 (11%), Positives = 45/167 (26%), Gaps = 12/167 (7%)
Query: 194 ERDVILWNTIVSGYIDVRNMIEARKLFDQMPKK-------DVISWNTMLSGYANNGDVEE 246
+ + A L + + +N ++ G+A G +E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 247 CKRLFEEMPER----NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVL 302
+ + + ++ S+ + ++ +++ + +L
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243
Query: 303 SACARLGALDFSKWVHVYAEYNGY-QGNVCVGNALIDMYAKCGIIEN 348
S R L V V L D+YAK G +
Sbjct: 244 SEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY 290
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 5e-08
Identities = 76/614 (12%), Positives = 162/614 (26%), Gaps = 224/614 (36%)
Query: 94 LDAMPNCFT---FPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA 150
D + + ++ S ++ L+ K FV L Y K
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLR--LFWTLLSKQEEMVQKFVEEVLRINY---KF 93
Query: 151 IEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSAR-------------CLFELAPERDV 197
+ + K ++ + + + + L EL P ++V
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 198 ILWNTIVSG-----------------------YIDVRN-------MIEARKLFDQMPKKD 227
++ + SG +++++N + +KL Q+
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 228 VISWNTMLSGYANNGDV-EECKRLFEEMPE-------RNVFSWNGLIGGYANNGLFFEVL 279
+ + + E +RL + P NV N +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--QNA------------KAW 259
Query: 280 DAFK---RMLTEGRVFPNDATIVTVLSACAR--------LGALD-------FSKWVHVYA 321
+AF ++L R + LSA L K++
Sbjct: 260 NAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 322 -----EYNGYQGNVCVGN----ALI-----------DMYAKCG------IIENAVDVFNS 355
E V N ++I D + IIE++++V
Sbjct: 316 QDLPRE-------VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 356 MDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNA-----------GEMPDGITFIGILC 404
+ + + LS+F +A ++ + ++
Sbjct: 369 AEYRKMFD----------------RLSVF--PPSAHIPTILLSLIWFDVIKSDVMV-VVN 409
Query: 405 ACTHMGLVE----EGLSYFQSMAMDYSIVPQ---------IEHYGCMVDLLARAGRLAEA 451
LVE E S+ ++ + + ++HY + +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-----------NIPKT 458
Query: 452 VDFVKRMPIEADAVIWANLLGSCRVY--KNVELAELALERLTELEPKNPANFVMLSNIYG 509
D +P D + + +G + KN+E E + ++
Sbjct: 459 FDSDDLIPPYLDQY-FYSHIG----HHLKNIEHPE---------------RMTLFRMVFL 498
Query: 510 DLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIV-------RAE 562
D R+ ++ +R S +N + L + + I R
Sbjct: 499 DF-RF-----LEQKIRHDST--AWNASGSILNTLQQL-----KFYKPYICDNDPKYERLV 545
Query: 563 ANMIKLLPQNNHPL 576
++ LP+ L
Sbjct: 546 NAILDFLPKIEENL 559
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 44/324 (13%), Positives = 89/324 (27%), Gaps = 68/324 (20%)
Query: 231 WNTMLSGYANNGDVEECKRLFEEMP--ERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTE 288
+ L+ ++ ++ + + E++ F +VL ++L
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL-- 332
Query: 289 GRVFPNDATIVTVLSACAR-LGALD-----FSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342
+ P + + + A G + + V + E V G Y
Sbjct: 333 -EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAV--GIY----YLC 385
Query: 343 CGIIENAVDVFN---SMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGIT- 398
I A F+ +MD + W G H GE I+
Sbjct: 386 VNKISEARRYFSKSSTMDPQFGPAWI---------GFA-------HSFAIEGEHDQAISA 429
Query: 399 ----------------FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDL 441
F+G+ +G + Y Q + Y++ + +
Sbjct: 430 YTTAARLFQGTHLPYLFLGM--QHMQLGNILLANEYLQ-SS--YALFQYDPLLLNELGVV 484
Query: 442 LARAGRLAEAVDFVKR---------MPIEADAVIWANLLGSCRVYKNVELAELALERLTE 492
+ A++ + + A WANL + R K + A AL +
Sbjct: 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544
Query: 493 LEPKNPANFVMLSNIYGDLGRWKD 516
L + ++ +Y
Sbjct: 545 LSTNDANVHTAIALVYLHKKIPGL 568
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 29/192 (15%), Positives = 56/192 (29%), Gaps = 13/192 (6%)
Query: 335 ALIDMYAKCGIIENAVDVFN-----SMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKN 389
+ A + V + S+D + S AL H+ +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129
Query: 390 AGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA 449
+ + IL + L + L Q D ++ + V L A +L
Sbjct: 130 ---LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLT---QLATAWVSLAAGGEKLQ 183
Query: 450 EAVDFVKRM--PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507
+A + M ++ E AE L+ + + +P + L +
Sbjct: 184 DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243
Query: 508 YGDLGRWKDVAR 519
LG+ +V
Sbjct: 244 SQHLGKPPEVTN 255
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 3e-04
Identities = 13/107 (12%), Positives = 29/107 (27%), Gaps = 9/107 (8%)
Query: 414 EGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDF----VKRMPIEADAVIWAN 469
+G + + + Q+ G +AG+ +A +A +
Sbjct: 3 DGGTLAMLRGLSEDTLEQLYALGF---NQYQAGKWDDAQKIFQALCMLDHYDARY--FLG 57
Query: 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516
L + E A + ++ P + + LG
Sbjct: 58 LGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDG 104
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 39/380 (10%), Positives = 90/380 (23%), Gaps = 48/380 (12%)
Query: 165 NVVVWTSMINGYISCGDIVSARCLF----ELAPERDVILWNTIVSGYIDVRNMIEARKLF 220
VV S G + + + L P+ V+ + G + + +
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ-QVVAIASHDGGKQALETVQRLLPVL 129
Query: 221 DQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMPERN---VFSWNGLIGGYANNGL 274
Q + V++ + G V+ + + V + GG
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET 189
Query: 275 FFEVLDAFKRMLTEGRVFPNDATIV----TVLSACARL-GAL-DFSKWVHV---YAEYNG 325
+L + + P + A + L + +
Sbjct: 190 VQRLLPVLCQAH---GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 246
Query: 326 YQGNVCVGNALIDMYAKCGIIENAVDVFN---SMDTKDLITWNTIISGLAMHGRGAGALS 382
G ++ + V + + ++ + G L
Sbjct: 247 SNGGG---------KQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLP 297
Query: 383 LFHEMKNAGEM-PDGITFIGILCAC-THMGLVEEGL-SYFQSMAMDYSIVPQ-IEHYGCM 438
+ A + P + I + V+ L Q+ + PQ +
Sbjct: 298 VL---CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT----PQQVVAIASH 350
Query: 439 VDLLARAGRLAEAV-DFVKRMPIE-ADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496
+ + + + V A+ G + + V+ L + L P+
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410
Query: 497 NPANFVMLSNIYGDLGRWKD 516
L +
Sbjct: 411 QVVAIASHDGGKQALETVQR 430
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 441 LLARAGRLAEAVDF----VKRMPIEADAVIWANLLGSCRVY-KNVELAELALERLTELEP 495
+ + LAEA ++ P +A W +L G + + LA +AL L+P
Sbjct: 26 SMLKLANLAEAALAFEAVCQKEPEREEA--WRSL-GLTQAENEKDGLAIIALNHARMLDP 82
Query: 496 KNPANFVMLSNIYGDLGRWKD 516
K+ A L+ + +
Sbjct: 83 KDIAVHAALAVSHTNEHNANA 103
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 589 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.78 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.68 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.68 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.62 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.53 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.46 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.31 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.31 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.31 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.3 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.27 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.26 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.25 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.23 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.23 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.15 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.15 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.14 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.13 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.13 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.11 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.11 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.1 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.09 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.08 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.07 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.07 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.07 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.06 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.04 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.04 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.03 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.02 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.02 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.01 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.01 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.0 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.0 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.98 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.96 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.96 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.95 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.94 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.93 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.93 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.92 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.92 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.92 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.9 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.9 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.9 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.9 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.89 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.86 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.84 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.83 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.83 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.82 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.82 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.8 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.8 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.79 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.79 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.78 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.77 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.75 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.73 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.73 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.72 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.72 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.71 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.69 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.68 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.67 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.66 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.64 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.64 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.63 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.63 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.63 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.6 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.57 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.54 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.54 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.49 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.47 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.45 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.45 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.43 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.42 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.39 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.38 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.36 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.36 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.33 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.3 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.29 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.25 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.22 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.16 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.16 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.15 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.1 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.04 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.97 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.9 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.88 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.86 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.75 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.75 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.74 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.65 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.63 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.58 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.43 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.41 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.37 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.36 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.31 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.28 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.27 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.13 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.1 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.9 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.88 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.82 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.7 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.64 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.63 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.99 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.84 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.48 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.87 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.7 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.47 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.46 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 93.99 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.33 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.1 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.1 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 93.05 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.5 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.4 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.87 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.79 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 90.63 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.08 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.05 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.63 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 89.56 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.8 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.76 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.6 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.4 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.3 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.27 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.23 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.07 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 86.74 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 86.74 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 84.78 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.38 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.98 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.65 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.35 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.95 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.1 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.43 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=382.96 Aligned_cols=492 Identities=10% Similarity=-0.036 Sum_probs=411.6
Q ss_pred HHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 007808 42 TACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEE 121 (589)
Q Consensus 42 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 121 (589)
..+.+.|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.+. .|+..++..++.+|.+.|++++|.+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 34566788888889998888889999999999999999999999999999854 5788899999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCC-------------------CeehHHHHHHHHHhCCCH
Q 007808 122 LHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDER-------------------NVVVWTSMINGYISCGDI 182 (589)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~ 182 (589)
+|+.+... +++..+++.++.+|.+.|++++|+++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988653 678899999999999999999999999965443 367899999999999999
Q ss_pred HHHHHHHHhCCCC---ChhHHHHHHHHHhcCCChHHHHHH---hcccCC----CChhhHHHHHHHHHhcCCHHHHHHHHh
Q 007808 183 VSARCLFELAPER---DVILWNTIVSGYIDVRNMIEARKL---FDQMPK----KDVISWNTMLSGYANNGDVEECKRLFE 252 (589)
Q Consensus 183 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~---~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~ 252 (589)
++|.+.|+++.+. +...+..+...+...+..+.+... +..+.. ....+|+.++..|.+.|++++|.++|+
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 9999999988643 445566666555444333222111 222211 233456667888999999999999999
Q ss_pred hCCC--CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 007808 253 EMPE--RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNV 330 (589)
Q Consensus 253 ~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 330 (589)
++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+.
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 9998 789999999999999999999999999999876 3467789999999999999999999999998764 6688
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACT 407 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 407 (589)
.+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 899999999999999999999999875 3467899999999999999999999999999863 457889999999999
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCC--HHHHHHHHHHHhcCC
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-------PIEAD--AVIWANLLGSCRVYK 478 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g 478 (589)
+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|+++|+++ +..|+ ..+|..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999764 3456889999999999999999999999988 34777 789999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHH
Q 007808 479 NVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSI 558 (589)
Q Consensus 479 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 558 (589)
++++|.+.++++++++|+++.+|..++.+|.+.|++++|.+.++++. +++|+++.+
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l------------------------~~~p~~~~~ 586 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL------------------------AISPNEIMA 586 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH------------------------hcCCCChHH
Confidence 99999999999999999999999999999999999999999999996 789999999
Q ss_pred HHHHHHHHH
Q 007808 559 VRAEANMIK 567 (589)
Q Consensus 559 ~~~l~~~~~ 567 (589)
+..|+++|.
T Consensus 587 ~~~l~~~~~ 595 (597)
T 2xpi_A 587 SDLLKRALE 595 (597)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 999999984
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=344.64 Aligned_cols=473 Identities=9% Similarity=-0.029 Sum_probs=404.6
Q ss_pred CCccchHHHHHHHHccCChhHHHHHhhcCCC--CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 007808 32 KSDYITPRIITACAQLKQMTYARKMFDKITD--QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKS 109 (589)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 109 (589)
++...|+.++..|.+.|++++|..+|+++.. |+..++..++.+|.+.|++++|..+|+.+... +++..+++.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 5677899999999999999999999999864 78889999999999999999999999998653 6788899999999
Q ss_pred HhccCChHHHHHHHHHHHHh---------------CCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCC---CeehHHH
Q 007808 110 CVKINALREGEELHCLVLKN---------------GFRANIFVGTALIELYSTGKAIEAAYKVFGEMDER---NVVVWTS 171 (589)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 171 (589)
+.+.|++++|.++|+++... |.+++..+++.++.+|.+.|++++|++.|+++.+. +...+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999999953211 12335789999999999999999999999999753 3344555
Q ss_pred HHHHHHhCCCHHHHHHH---HHhCCCC----ChhHHHHHHHHHhcCCChHHHHHHhcccCC--CChhhHHHHHHHHHhcC
Q 007808 172 MINGYISCGDIVSARCL---FELAPER----DVILWNTIVSGYIDVRNMIEARKLFDQMPK--KDVISWNTMLSGYANNG 242 (589)
Q Consensus 172 l~~~~~~~g~~~~a~~~---~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~ 242 (589)
+...+...+..+.+... +..+... ...+|+.++..|.+.|++++|.++|+++.+ ++..+++.++.+|.+.|
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence 55544433322221110 2222222 334566778889999999999999999987 88999999999999999
Q ss_pred CHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 007808 243 DVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHV 319 (589)
Q Consensus 243 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 319 (589)
++++|.++|+++.+ .+..+|+.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|..+|+
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999874 477889999999999999999999999999764 5678899999999999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 007808 320 YAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG 396 (589)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~ 396 (589)
++.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.. +.+.
T Consensus 398 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 475 (597)
T 2xpi_A 398 KSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDP 475 (597)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 998865 5578899999999999999999999999875 3477899999999999999999999999999853 4478
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCCC--hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHH
Q 007808 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDY---SIVPQ--IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWAN 469 (589)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 469 (589)
.+|..++..|.+.|++++|.++|+++.... +..|+ ..+|..++.+|.+.|++++|++.++++ ...| +..+|..
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 555 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 899999999999999999999999996542 55777 789999999999999999999999998 3334 7899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
+..+|.+.|++++|.+.|+++++++|+++.++..++.+|..
T Consensus 556 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 556 IALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988753
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-30 Score=252.10 Aligned_cols=368 Identities=14% Similarity=0.067 Sum_probs=304.2
Q ss_pred HHHHHhCCCHHHHHHHHHhCC--CC-ChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHH
Q 007808 173 INGYISCGDIVSARCLFELAP--ER-DVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEE 246 (589)
Q Consensus 173 ~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 246 (589)
...+.+.|++++|.+.++.+. .| +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 344556666666666665543 22 445666667777777888888777776654 456778888888888888888
Q ss_pred HHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 247 CKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 247 A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
|...|+++.+ | +..+|..+..++...|++++|++.|.++.+.. +.+...+..+...+...|++++|...+.++.+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888764 4 45578888889999999999999999988865 23345566777788888999999999998888
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHH
Q 007808 324 NGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITF 399 (589)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~ 399 (589)
.. +.+..++..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..+++.... .| +..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHH
Confidence 74 5567788889999999999999999998876 235567888999999999999999999999884 45 57788
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcC
Q 007808 400 IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVY 477 (589)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~ 477 (589)
..+...+...|++++|.+.|+++... .+.+...|..++.+|.+.|++++|++.++++ . .+++..++..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 89999999999999999999999753 2334778999999999999999999999988 2 345788899999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchH
Q 007808 478 KNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKS 557 (589)
Q Consensus 478 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 557 (589)
|++++|...+++++++.|+++.++..++.+|.+.|++++|++.++++. +++|+++.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------------~~~p~~~~ 374 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI------------------------RISPTFAD 374 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH------------------------TTCTTCHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------hhCCCCHH
Confidence 999999999999999999999999999999999999999999999996 78899999
Q ss_pred HHHHHHHHHHHccc
Q 007808 558 IVRAEANMIKLLPQ 571 (589)
Q Consensus 558 ~~~~l~~~~~~~~~ 571 (589)
++..+|+++.++|+
T Consensus 375 a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 375 AYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHhHHHHHHHccC
Confidence 99999999998874
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-28 Score=239.33 Aligned_cols=278 Identities=10% Similarity=0.069 Sum_probs=223.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Q 007808 229 ISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSAC 305 (589)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~ 305 (589)
.+|..+...+.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 179 (388)
T 1w3b_A 102 DGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVF 179 (388)
T ss_dssp HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3455555666666666666666655543 3 34456667777777788888888888877754 33466777777778
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHH
Q 007808 306 ARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 382 (589)
...|++++|...++++.+.+ +.+...+..+...+...|++++|...|++.. +.+..++..+..+|...|++++|++
T Consensus 180 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 180 NAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888877765 4466777888888888888888888887664 3356788889999999999999999
Q ss_pred HHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 007808 383 LFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI 460 (589)
Q Consensus 383 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 460 (589)
.|+++.+. .| +..++..+...+.+.|++++|.+.++++.+. .+.+..++..++..+.+.|++++|++.++++ ..
T Consensus 259 ~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 259 TYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp HHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999985 44 5678899999999999999999999999764 3567889999999999999999999999998 44
Q ss_pred CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 461 EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 461 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
.| +...+..+..++.+.|++++|...|+++++++|+++.++..++.++...|+
T Consensus 335 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 45 577889999999999999999999999999999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=232.75 Aligned_cols=183 Identities=13% Similarity=0.093 Sum_probs=160.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC---------hhHHHHHHHHHHHcCCCCCh
Q 007808 260 FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGA---------LDFSKWVHVYAEYNGYQGNV 330 (589)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 330 (589)
..++.+|.+|++.|++++|+++|++|.+.| +.||..||+.+|.+|++.+. ++.|.++|++|...|+.||.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 357778889999999999999999999988 89999999999998887654 57788899999999999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007808 331 CVGNALIDMYAKCGIIENAVDVFNSMD----TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC 406 (589)
Q Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 406 (589)
.+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999998886 5788899999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR 444 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (589)
++.|++++|.+++++|. +.+..|+..||+.++..|..
T Consensus 186 ~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999995 45889999999988888765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-25 Score=225.27 Aligned_cols=449 Identities=9% Similarity=-0.076 Sum_probs=313.7
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHH
Q 007808 67 SWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYS 146 (589)
Q Consensus 67 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 146 (589)
.|......+.+.|++++|++.|+++.+.+ |+..+|..+..++...|++++|.+.++.+++.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 35556677777888888888888887764 677777777888888888888888888887765 345567777777788
Q ss_pred cCCChHHHHHHHccCCCC---CeehHHHHHHHHHhCCCHHHHHHHHHhCCCC----ChhHHHHHHHHHhcCCChHHHHHH
Q 007808 147 TGKAIEAAYKVFGEMDER---NVVVWTSMINGYISCGDIVSARCLFELAPER----DVILWNTIVSGYIDVRNMIEARKL 219 (589)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~ 219 (589)
+.|++++|...|+++... +......++..+........+.+.+..+... +...+.. ..+ .
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~-------~ 151 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP------AKE-------R 151 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh------hhH-------H
Confidence 888888888777766431 2222222222222221111111111111000 0000000 000 0
Q ss_pred hcccCC-CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCC-CchhHHHHHHHHHh---CCChHHHHHHHHHHHH-----cC
Q 007808 220 FDQMPK-KDVISWNTMLSGYANNGDVEECKRLFEEMPER-NVFSWNGLIGGYAN---NGLFFEVLDAFKRMLT-----EG 289 (589)
Q Consensus 220 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~ 289 (589)
...... |+..... .+.......... ..+..| +...+..+...+.. .|++++|+..|+++.+ ..
T Consensus 152 ~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 152 KDKQENLPSVTSMA----SFFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp -----CCCCHHHHH----HHHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhccCCchhHHHH----HHHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 000000 1111111 111100000000 011112 23444455555554 8999999999999988 31
Q ss_pred CC-------CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---C
Q 007808 290 RV-------FPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---K 359 (589)
Q Consensus 290 ~~-------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 359 (589)
.. +.+...+..+...+...|+++.|...+..+.+.... ...+..+...+...|++++|...++++.+ .
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 302 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN 302 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT
T ss_pred cCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC
Confidence 00 123456778888899999999999999999987633 88888999999999999999999998763 3
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 379 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFA 379 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHH
Confidence 66789999999999999999999999999853 335678888999999999999999999999764 234567888999
Q ss_pred HHHHhcCCHHHHHHHHhhC-C---CCCC----HHHHHHHHHHHhc---CCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-P---IEAD----AVIWANLLGSCRV---YKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
..|.+.|++++|.+.++++ . ..++ ...+..+...+.. .|++++|...++++++..|+++.++..++.+|
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 9999999999999999987 2 2222 3478888899999 99999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 509 GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
.+.|++++|...++++. +++|+++.++..+.....
T Consensus 460 ~~~g~~~~A~~~~~~a~------------------------~~~~~~~~~~~~~~~~~~ 494 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESA------------------------DLARTMEEKLQAITFAEA 494 (514)
T ss_dssp HHTTCHHHHHHHHHHHH------------------------HHCSSHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH------------------------HhccccHHHHHHHHHHHH
Confidence 99999999999999986 788999999988776654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=223.19 Aligned_cols=425 Identities=11% Similarity=-0.005 Sum_probs=265.2
Q ss_pred cccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHH
Q 007808 65 VVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIEL 144 (589)
Q Consensus 65 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 144 (589)
...|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.++++++.+ +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888889999999999999988765 4466788888888889999999999999998876 4467788888888
Q ss_pred HHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccC
Q 007808 145 YSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMP 224 (589)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 224 (589)
+...|++++|+..|+.+ ..++......+..+...+...+|...++.+...++...
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~------------------------ 157 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG------------------------ 157 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------------------------
Confidence 88888888888888643 22222222334444455555566666655543211000
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCch---hHHHHHHHHHh--------CCChHHHHHHHHHHHHcCCCCC
Q 007808 225 KKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVF---SWNGLIGGYAN--------NGLFFEVLDAFKRMLTEGRVFP 293 (589)
Q Consensus 225 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~p 293 (589)
+........+..+....+.+.+...+......+.. ....+...+.. .|++++|+..|+++.+.. |
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~---p 233 (537)
T 3fp2_A 158 -SQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN---T 233 (537)
T ss_dssp --CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----C
T ss_pred -ccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC---C
Confidence 00011112222233334444444444433332221 12222222111 135566666666666543 2
Q ss_pred c--------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcc
Q 007808 294 N--------DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLI 362 (589)
Q Consensus 294 ~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 362 (589)
+ ..++..+...+...|+++.|...+..+.+.. |+...+..+...+...|++++|...|+++. ..+..
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 311 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP 311 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH
Confidence 2 1234444555566666666666666666653 235566666666666677777776666554 23456
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLL 442 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (589)
+|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...|
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEIL 388 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 67777777777777788888777777642 224566777777777888888888888777653 233456677777888
Q ss_pred HhcCCHHHHHHHHhhCC----CCC----CHHHHHHHHHHHhcC----------CCHHHHHHHHHHHHccCCCCCcchHHH
Q 007808 443 ARAGRLAEAVDFVKRMP----IEA----DAVIWANLLGSCRVY----------KNVELAELALERLTELEPKNPANFVML 504 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l 504 (589)
...|++++|++.++++. ..+ ....+......+... |++++|...++++++.+|+++.++..+
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 468 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGL 468 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 88888888888777751 111 122233444556666 888888888888888888888888888
Q ss_pred HHHHhhcCChHHHHHHHHHhh
Q 007808 505 SNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.+|.+.|++++|++.++++.
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 888888888888888888875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=225.61 Aligned_cols=198 Identities=13% Similarity=0.119 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC---------h
Q 007808 277 EVLDAFKRMLTEGRVFPN-DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI---------I 346 (589)
Q Consensus 277 ~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 346 (589)
.+..+.+++.+.+ ..+. ...++.+|.+|++.|++++|.++|++|.+.|++||..+|+.||.+|++.+. +
T Consensus 8 ~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445556676666 5444 346888999999999999999999999999999999999999999987665 6
Q ss_pred HHHHHHHhhCC----CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHh
Q 007808 347 ENAVDVFNSMD----TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSM 422 (589)
Q Consensus 347 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 422 (589)
++|.++|++|. .||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999986 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC---CCCCCHHHHHHHHHHHhc
Q 007808 423 AMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM---PIEADAVIWANLLGSCRV 476 (589)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~ 476 (589)
.+ .|+.||..+|+.|+.+|++.|+.++|.+++++| +..|+..||+.++..|..
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 65 599999999999999999999999999999999 589999999999988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-24 Score=216.79 Aligned_cols=350 Identities=12% Similarity=0.063 Sum_probs=269.0
Q ss_pred ChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHH
Q 007808 196 DVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGY 269 (589)
Q Consensus 196 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 269 (589)
+...+..++..+.+.|++++|..+|+++.+ .+..++..+...+...|++++|...|+++.+ .+..++..+..+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 445566666677777777777777766653 3566777777777888888888888877664 3456778888888
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCcH----HHHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCChhHH
Q 007808 270 ANNGLFFEVLDAFKRMLTEGRVFPND----ATIVTV------------LSACARLGALDFSKWVHVYAEYNGYQGNVCVG 333 (589)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 333 (589)
...|++++|++.|+++.+.. |+. ..+..+ ...+...|+++.|...+..+.+.. +.+..++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSN---PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 88888888888888888754 433 344433 444788899999999999988765 5577888
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHH-------
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGI------- 402 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l------- 402 (589)
..++.+|.+.|++++|.+.|+++. +.+..+|..++.+|...|++++|+..|+++... .|+ ...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHH
Confidence 889999999999999999998876 346788999999999999999999999999874 454 3344443
Q ss_pred -----HHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHH
Q 007808 403 -----LCACTHMGLVEEGLSYFQSMAMDYSIVPQ-----IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANL 470 (589)
Q Consensus 403 -----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 470 (589)
+..|...|++++|..+|+++... .|+ ...+..++.++.+.|++++|+..++++ ...| +...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 78899999999999999999764 344 457888999999999999999999987 3344 68889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHH------------HhhcC-----ChHHHHHHHHHhhhCCCccCC
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI------------YGDLG-----RWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~~~~~~~~~~~ 533 (589)
..+|...|++++|...++++++++|+++.++..++.+ |...| +.+++.+.++++.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~-------- 407 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLA-------- 407 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHH--------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHH--------
Confidence 9999999999999999999999999999999999844 44445 4556666666532
Q ss_pred ccceeeeCCeeeeeccccCCCc----------hHHHHHHHHHHHHcccCCCCcc
Q 007808 534 GCSSIEVNEVVMLGCLSRELDR----------KSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
++.+|++ ......++.+|..+|+......
T Consensus 408 ---------------l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 408 ---------------LQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp ---------------HHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred ---------------HHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 2333332 2366778899999988765543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-24 Score=220.88 Aligned_cols=435 Identities=11% Similarity=-0.013 Sum_probs=314.4
Q ss_pred ccchHHHHHHHHccCChhHHHHHhhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 007808 34 DYITPRIITACAQLKQMTYARKMFDKITD---QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSC 110 (589)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 110 (589)
...+..+...+.+.|++++|...|+++.+ .+..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 35677889999999999999999999765 466789999999999999999999999998875 44667888899999
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCC------eehHHHHHHHHHhCCCHHH
Q 007808 111 VKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERN------VVVWTSMINGYISCGDIVS 184 (589)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~ 184 (589)
...|++++|...|+ .....+.+. ...+..+...+....|...++.+...+ .......+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 433322222 222334445566688898888886521 1223344444555555555
Q ss_pred HHHHHHhCCCCChh---HHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-
Q 007808 185 ARCLFELAPERDVI---LWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE--RN- 258 (589)
Q Consensus 185 a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~- 258 (589)
+...+......+.. ....+...+...+ -......|++++|..+|+.+.+ |+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~a~~~~~~A~~~~~~~l~~~p~~ 235 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATD-----------------------EGYLVANDLLTKSTDMYHSLLSANTVD 235 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSH-----------------------HHHHHHHHHHHHHHHHHHHHHC--CCC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhh-----------------------hhhHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 55555444433222 2222221111110 0001112456677777776655 22
Q ss_pred -------chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 007808 259 -------VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVC 331 (589)
Q Consensus 259 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 331 (589)
..++..+...+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+.. +.+..
T Consensus 236 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 311 (537)
T 3fp2_A 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH---PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPP 311 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHH
T ss_pred chhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHH
Confidence 1245666778888899999999999998865 667788888888899999999999999988875 55678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc
Q 007808 332 VGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTH 408 (589)
Q Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 408 (589)
++..+...+...|++++|...|+++. ..+...|..+...+...|++++|+..++++.+.. +.+...+..+...+..
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 88889999999999999999998775 3356788999999999999999999999998853 3356688889999999
Q ss_pred cCcHHHHHHHHHHhHHhcCCCC----ChHHHHHHHHHHHhc----------CCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVP----QIEHYGCMVDLLARA----------GRLAEAVDFVKRM-PIEA-DAVIWANLLG 472 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 472 (589)
.|++++|...++++.......+ ....+..+..+|.+. |++++|+..++++ ...| +...+..+..
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 470 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ 470 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999865422112 123345556778888 9999999999988 3344 6778888999
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
++...|++++|.+.|++++++.|+++....
T Consensus 471 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 471 LKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999998665433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-24 Score=214.10 Aligned_cols=311 Identities=12% Similarity=0.033 Sum_probs=268.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007808 227 DVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLS 303 (589)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 303 (589)
+...+..+...+.+.|++++|...|+.+.+ .+..+|..+..+|...|++++|+..|+++.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHH
Confidence 456788899999999999999999998875 467889999999999999999999999999976 445778899999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCh---hHHHHH------------HHHHHhcCChHHHHHHHhhCC---CCCcchHH
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNV---CVGNAL------------IDMYAKCGIIENAVDVFNSMD---TKDLITWN 365 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 365 (589)
++.+.|++++|...++.+.+.. +.+. ..+..+ ...+...|++++|...|+++. ..+...+.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999998864 3334 555545 445889999999999999876 34678899
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHH------
Q 007808 366 TIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCM------ 438 (589)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l------ 438 (589)
.++.+|.+.|++++|+..|+++.+.. +.+..++..++..+...|++++|...|+++... .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHH
Confidence 99999999999999999999998852 446788999999999999999999999999753 344 4444444
Q ss_pred ------HHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 439 ------VDLLARAGRLAEAVDFVKRM-PIEAD-----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 439 ------~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
+..+.+.|++++|++.|+++ ...|+ ...+..+..++.+.|++++|+..++++++++|+++.++..++.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 78999999999999999998 34554 3467888899999999999999999999999999999999999
Q ss_pred HHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHH
Q 007808 507 IYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKL 568 (589)
Q Consensus 507 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 568 (589)
+|...|++++|+..++++. +++|+++.++..++.+...
T Consensus 338 ~~~~~~~~~~A~~~~~~al------------------------~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQ------------------------EHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHH------------------------TTSSSCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHH------------------------HhCcchHHHHHHHHHHHHH
Confidence 9999999999999999996 7889999999999965443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=219.72 Aligned_cols=390 Identities=8% Similarity=-0.058 Sum_probs=302.7
Q ss_pred ehHHHHHHHHHhCCCHHHHHHHHHhCC--CCChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhc
Q 007808 167 VVWTSMINGYISCGDIVSARCLFELAP--ERDVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANN 241 (589)
Q Consensus 167 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 241 (589)
..+......+.+.|++++|...|+.+. .|+..++..++.++.+.|++++|...++++.+ .+..++..+..++.+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 456777888899999999999998875 36788888999999999999999999988764 3556888888999999
Q ss_pred CCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHH--------------------------------
Q 007808 242 GDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRML-------------------------------- 286 (589)
Q Consensus 242 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------------------------- 286 (589)
|++++|...|+.+.+ ++......++..+........+.+.+..+.
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 999999999988764 223333333333322221111111111100
Q ss_pred --HcCCC---------CCcHHHHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCC--------CCChhHHHHHHHH
Q 007808 287 --TEGRV---------FPNDATIVTVLSACAR---LGALDFSKWVHVYAEY-----NGY--------QGNVCVGNALIDM 339 (589)
Q Consensus 287 --~~~~~---------~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~ 339 (589)
..... +.+...+......+.. .|+++.|...+..+.+ ... +.+..++..++..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 00000 1113344444444443 8999999999999988 311 2345677888999
Q ss_pred HHhcCChHHHHHHHhhCC--CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHH
Q 007808 340 YAKCGIIENAVDVFNSMD--TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 340 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 417 (589)
+...|++++|...|+++. .|+...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++|..
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999875 3447788889999999999999999999999853 3466788889999999999999999
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 418 YFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
.++++... .+.+...+..++..|...|++++|+..++++ ...| +...+..+...+...|++++|...++++++..|
T Consensus 326 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 326 DFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 99999753 3345778889999999999999999999987 2233 567788888999999999999999999999999
Q ss_pred CCCc------chHHHHHHHhh---cCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHH
Q 007808 496 KNPA------NFVMLSNIYGD---LGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 496 ~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 566 (589)
+++. .+..++.++.. .|++++|++.++++. +.+|+++.++..++.+|
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~------------------------~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS------------------------KLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH------------------------HhCcccHHHHHHHHHHH
Confidence 8766 89999999999 999999999999986 67899999999999999
Q ss_pred HHcccCCCCcchHhhhh
Q 007808 567 KLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 567 ~~~~~~~~~~~~~~~~~ 583 (589)
...|+.++|+.+.....
T Consensus 460 ~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 99999998888776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-22 Score=193.91 Aligned_cols=322 Identities=13% Similarity=0.039 Sum_probs=222.4
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHH
Q 007808 197 VILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYA 270 (589)
Q Consensus 197 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 270 (589)
+..+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...|+++.+ | +...|..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34455555566666666666666655543 2344555555555555555555555555443 2 3344555555555
Q ss_pred hCCChHHHHHHHHHHHHcCCCCC---c-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 007808 271 NNGLFFEVLDAFKRMLTEGRVFP---N-DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGII 346 (589)
Q Consensus 271 ~~g~~~~A~~~~~~~~~~~~~~p---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (589)
..|++++|+..|+++.+.. | + ...+..+..... ...+..+...+...|++
T Consensus 83 ~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 5555555555555555532 3 1 111111110000 00122235677788888
Q ss_pred HHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007808 347 ENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 347 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 423 (589)
++|.+.++++. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888765 3356678888888888888999998888888752 3466778888888888899999999888887
Q ss_pred HhcCCCCChHHHH------------HHHHHHHhcCCHHHHHHHHhhC-CCCCC-H----HHHHHHHHHHhcCCCHHHHHH
Q 007808 424 MDYSIVPQIEHYG------------CMVDLLARAGRLAEAVDFVKRM-PIEAD-A----VIWANLLGSCRVYKNVELAEL 485 (589)
Q Consensus 424 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~~ 485 (589)
+.. +.+...+. .++..+.+.|++++|++.++++ ...|+ . ..+..+..++...|++++|..
T Consensus 216 ~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 532 22233222 3367799999999999999987 33444 3 234456688999999999999
Q ss_pred HHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHH
Q 007808 486 ALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANM 565 (589)
Q Consensus 486 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 565 (589)
.++++++.+|+++.++..++.+|.+.|++++|.+.++++. +++|+++.+...|+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~------------------------~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ------------------------EHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------TTCTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------hcCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999986 7899999999999999
Q ss_pred HHHccc
Q 007808 566 IKLLPQ 571 (589)
Q Consensus 566 ~~~~~~ 571 (589)
+..+++
T Consensus 350 ~~~~~~ 355 (359)
T 3ieg_A 350 QRLLKQ 355 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-21 Score=182.18 Aligned_cols=286 Identities=12% Similarity=-0.009 Sum_probs=236.9
Q ss_pred CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHH
Q 007808 257 RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNAL 336 (589)
Q Consensus 257 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 336 (589)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...+..+.+.. +.+...+..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 455667777788888888888888888888765 3344455566777788888888888888888764 4567778888
Q ss_pred HHHHHhcC-ChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcH
Q 007808 337 IDMYAKCG-IIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLV 412 (589)
Q Consensus 337 ~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 412 (589)
...+...| ++++|...|+++.+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 88888888 89999999887653 356788889999999999999999999998853 33456677788899999999
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC-C----------CCCHHHHHHHHHHHhcCCCHH
Q 007808 413 EEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP-I----------EADAVIWANLLGSCRVYKNVE 481 (589)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----------~p~~~~~~~l~~~~~~~g~~~ 481 (589)
++|.+.++++... .+.+...+..++..|...|++++|+..++++. . +.....+..+..++...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998752 34457788899999999999999999988761 1 334578888999999999999
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHH
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRA 561 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 561 (589)
+|...+++++++.|+++.++..++.+|.+.|++++|.+.++++. +++|+++.++..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------------------~~~p~~~~~~~~ 309 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL------------------------GLRRDDTFSVTM 309 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT------------------------TTCSCCHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH------------------------ccCCCchHHHHH
Confidence 99999999999999999999999999999999999999999885 789999999999
Q ss_pred HHHHHH-HcccC
Q 007808 562 EANMIK-LLPQN 572 (589)
Q Consensus 562 l~~~~~-~~~~~ 572 (589)
+++++. ..|+.
T Consensus 310 l~~~~~~~~g~~ 321 (330)
T 3hym_B 310 LGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHTTTTC-
T ss_pred HHHHHHHHhCch
Confidence 999984 55554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-20 Score=180.24 Aligned_cols=308 Identities=12% Similarity=0.059 Sum_probs=222.4
Q ss_pred eehHHHHHHHHHhCCCHHHHHHHHHhCCC---CChhHHHHHHHHHhcCCChHHHHHHhcccCC--C-ChhhHHHHHHHHH
Q 007808 166 VVVWTSMINGYISCGDIVSARCLFELAPE---RDVILWNTIVSGYIDVRNMIEARKLFDQMPK--K-DVISWNTMLSGYA 239 (589)
Q Consensus 166 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 239 (589)
+..+..+...+...|++++|...|+.+.+ .+..++..+..++...|++++|...++++.+ | +...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45678889999999999999999998753 3678999999999999999999999999875 3 6678899999999
Q ss_pred hcCCHHHHHHHHhhCCCCCc------hhHHHH------------HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007808 240 NNGDVEECKRLFEEMPERNV------FSWNGL------------IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTV 301 (589)
Q Consensus 240 ~~~~~~~A~~~~~~~~~~~~------~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 301 (589)
..|++++|...|+++.+.++ ..+..+ ...+...|++++|++.++++.+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------ 150 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC------------ 150 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------
Confidence 99999999999999876332 333333 344555555555555555555443
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChH
Q 007808 302 LSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGA 378 (589)
Q Consensus 302 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 378 (589)
+.+...+..+...+...|++++|...++++.+ .+...+..+...+...|+++
T Consensus 151 -------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 151 -------------------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred -------------------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 22334444455555555555555555554432 23445666666666667777
Q ss_pred HHHHHHHHHHHCCCCCC-HhHH------------HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh--HHHHHHHHHHH
Q 007808 379 GALSLFHEMKNAGEMPD-GITF------------IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI--EHYGCMVDLLA 443 (589)
Q Consensus 379 ~A~~~~~~m~~~~~~p~-~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~ 443 (589)
+|...+++..+. .|+ ...+ ..+...+...|++++|...++++.......+.. ..+..+..+|.
T Consensus 206 ~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 206 LSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 777777766653 232 2222 233666888899999999999887643211111 33556788999
Q ss_pred hcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 444 RAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
+.|++++|++.++++ ...| +...+..+...+...|++++|.+.|+++++++|+++.++..+..+....+
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999988 3344 67888889999999999999999999999999999988888887765443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.5e-21 Score=185.89 Aligned_cols=315 Identities=12% Similarity=-0.016 Sum_probs=202.0
Q ss_pred CCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHH-HHhhCCC--C-----CchhHHHHHHHHHhCCChHHHHHH
Q 007808 210 VRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKR-LFEEMPE--R-----NVFSWNGLIGGYANNGLFFEVLDA 281 (589)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~A~~~ 281 (589)
.+.++.+...|+.+.+.+.. .+.-.|++++|.. .|++..+ | +...+..+...+...|++++|+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555555554432222 2334577788887 7776554 1 245577778888888888888888
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCc
Q 007808 282 FKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDL 361 (589)
Q Consensus 282 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 361 (589)
|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..++..++.+|...
T Consensus 87 ~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~------------------ 145 (368)
T 1fch_A 87 FEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE------------------ 145 (368)
T ss_dssp HHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc------------------
Confidence 88888764 3455566666777777777777777777766654 33444444455555444
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hHHH---------------HHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-ITFI---------------GILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~---------------~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
|++++|+..++++... .|+. ..+. ..+..+...|++++|...++++...
T Consensus 146 -------------g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 146 -------------SLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp -------------TCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 4555555555554442 1211 1111 0223333889999999999999765
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHH
Q 007808 426 YSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVM 503 (589)
Q Consensus 426 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 503 (589)
....++..++..++..|.+.|++++|+..++++ ...| +...+..+...+...|++++|+..+++++++.|+++.++..
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 290 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN 290 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 333235788999999999999999999999987 3344 57888999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHh
Q 007808 504 LSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 504 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
++.+|.+.|++++|+..++++.+.. |+.... -...+|..+.++..++.+|..+|+.++|.....
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQ--RKSRGP-----------RGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH--HTC-----------------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCc-----------cccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 9999999999999999999986211 100000 002345559999999999999999988776543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-17 Score=175.46 Aligned_cols=381 Identities=11% Similarity=0.072 Sum_probs=298.5
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHh
Q 007808 101 FTFPIVLKSCVKINALREGEELHCLVLKNGF--RANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYIS 178 (589)
Q Consensus 101 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 178 (589)
.-.....+++...|.+.+|.+++++..-.+- .-+...-+.|+.+..+. +..+..++.++...-+ ...+...+..
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 3445667888899999999999999884321 13445666677766666 5566666666655323 4568889999
Q ss_pred CCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007808 179 CGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERN 258 (589)
Q Consensus 179 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 258 (589)
.|.+++|..+|++.... ....+.++ ...|++++|.++.++. .+..+|..+..++.+.|++++|.+.|.+. .|
T Consensus 1062 lglyEEAf~IYkKa~~~-~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD 1133 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDVN-TSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DD 1133 (1630)
T ss_pred CCCHHHHHHHHHHcCCH-HHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CC
Confidence 99999999999997522 22223332 2778999999999877 44778889999999999999999999775 67
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID 338 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (589)
...|..++.++.+.|++++|++.|....+.. ++....+.++.+|++.++++....+. + .++...+..+..
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGD 1203 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHH
Confidence 7788889999999999999999999888754 44434445888999998888644442 2 345667778999
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHH
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
.|...|++++|..+|... ..|..+...|.+.|++++|++.+++. .+..+|..+..+|...|++..|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999999985 48999999999999999999999876 3558899999999999999999987
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHH--hcCCCHHHHHHHHHHHHccC
Q 007808 419 FQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSC--RVYKNVELAELALERLTELE 494 (589)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~ 494 (589)
...+ ..++..+..++..|.+.|.+++|+.+++.. +.+|. ...|.-+...+ .+-++..++.+.|..-..+.
T Consensus 1273 gl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1273 GLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence 6543 356667788999999999999999999877 44543 34454455444 45667888888888888777
Q ss_pred C-----CCCcchHHHHHHHhhcCChHHHHHH
Q 007808 495 P-----KNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 495 p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
| .+...|..++-+|.+.|+|+.|...
T Consensus 1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 7 6788899999999999999999865
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-19 Score=170.62 Aligned_cols=286 Identities=12% Similarity=0.013 Sum_probs=231.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007808 226 KDVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVL 302 (589)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 302 (589)
.+...+..+...+...|++++|.++|+++.+ .+...+..++.++...|++++|+..++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 4556667777778888888888888887764 345566677788888888888888888888865 34566777788
Q ss_pred HHHHhcC-ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChH
Q 007808 303 SACARLG-ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGA 378 (589)
Q Consensus 303 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 378 (589)
..+...| +++.|...+..+.+.. +.+...+..+...+...|++++|...|+++. +.+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 8888888 8888888888888765 4466778888889999999999999988775 335567788899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcC-------CCCChHHHHHHHHHHHhcCCHHHH
Q 007808 379 GALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYS-------IVPQIEHYGCMVDLLARAGRLAEA 451 (589)
Q Consensus 379 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 451 (589)
+|+..++++.+.. +.+...+..+...+...|++++|...++++..... .+.....+..++.+|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998853 34667888899999999999999999998876421 133467889999999999999999
Q ss_pred HHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH-hhcCChH
Q 007808 452 VDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY-GDLGRWK 515 (589)
Q Consensus 452 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 515 (589)
++.++++ ...| +...+..+...+...|++++|.+.++++++++|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999987 2333 5678888899999999999999999999999999999999999998 4566543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-18 Score=175.94 Aligned_cols=318 Identities=11% Similarity=0.036 Sum_probs=229.4
Q ss_pred CCCHHHHHHHHHhCCCC-ChhHHHHHHHHHhc----CCChHHHHHHhcccCC-CChhhHHHHHHHHHh----cCCHHHHH
Q 007808 179 CGDIVSARCLFELAPER-DVILWNTIVSGYID----VRNMIEARKLFDQMPK-KDVISWNTMLSGYAN----NGDVEECK 248 (589)
Q Consensus 179 ~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~ 248 (589)
.+++++|..+|++..+. +...+..+...|.. .+++++|...|++..+ .+...+..+...|.. .++.++|.
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 44444444444443322 44445555555555 5566666666665543 345556666666665 66777777
Q ss_pred HHHhhCCC-CCchhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCChhHHHHHHH
Q 007808 249 RLFEEMPE-RNVFSWNGLIGGYAN----NGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR----LGALDFSKWVHV 319 (589)
Q Consensus 249 ~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 319 (589)
+.|++..+ .+..++..+...|.. .++.++|++.|++..+.+ +...+..+...+.. .++.++|...++
T Consensus 172 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 172 EWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 77776654 456677777777777 788888888888888765 34556666666665 678888888888
Q ss_pred HHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCCC-CcchHHHHHHHHHhC-----CChHHHHHHHHHHHH
Q 007808 320 YAEYNGYQGNVCVGNALIDMYAK----CGIIENAVDVFNSMDTK-DLITWNTIISGLAMH-----GRGAGALSLFHEMKN 389 (589)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~ 389 (589)
+..+.+ +...+..+...|.. .++.++|.+.|++..+. ++..+..+...|... +++++|+.+|++..+
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 887754 45566667777777 78889999988877643 566777788888877 899999999999988
Q ss_pred CCCCCCHhHHHHHHHHHhccC---cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhCCCCC
Q 007808 390 AGEMPDGITFIGILCACTHMG---LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEAVDFVKRMPIEA 462 (589)
Q Consensus 390 ~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p 462 (589)
.| +...+..+...|...| ++++|.++|++..+. .++..+..|...|.. .+++++|++.|++.....
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 65 4456667777776655 889999999988653 467788888999988 889999999999883334
Q ss_pred CHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCC---CCcchHHHHHHHhh
Q 007808 463 DAVIWANLLGSCRV----YKNVELAELALERLTELEPK---NPANFVMLSNIYGD 510 (589)
Q Consensus 463 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 510 (589)
+...+..+...|.. .++.++|...|+++.+.+|+ ++.+...++.++..
T Consensus 398 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 398 LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 67777888888877 89999999999999998844 67777777776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-17 Score=171.21 Aligned_cols=481 Identities=10% Similarity=0.057 Sum_probs=342.3
Q ss_pred HHHhCCCCCccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhC----CCCCCc
Q 007808 25 VVTSGLEKSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKL----DAMPNC 100 (589)
Q Consensus 25 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~~ 100 (589)
-...| ..++.++|.|...|...++-++. .+. .|..-=..++.-||...++.-|.-.|++-.-. .+....
T Consensus 865 ~~~~g-~~~~~~hnalakiyid~n~npe~--fL~----~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n 937 (1630)
T 1xi4_A 865 RIHEG-CEEPATHNALAKIYIDSNNNPER--FLR----ENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNEN 937 (1630)
T ss_pred HHhCC-CCCHHHHHHHHHHHhccCCCHHH--Hhh----ccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcc
Confidence 34445 56778888888888876543322 111 12222223344445444544444333320000 011112
Q ss_pred ccHHHHHHHHhccCChHH-----------HHHHHHHHHHhCC--CCchHHHhHHHHHHHcCCChHHHHHHHccCCC-C--
Q 007808 101 FTFPIVLKSCVKINALRE-----------GEELHCLVLKNGF--RANIFVGTALIELYSTGKAIEAAYKVFGEMDE-R-- 164 (589)
Q Consensus 101 ~~~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-- 164 (589)
..|....+.+.+..+.+. =.++.++.....+ ..++.--...++.|...|...+|+++++++.- +
T Consensus 938 ~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~ 1017 (1630)
T 1xi4_A 938 SLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSV 1017 (1630)
T ss_pred hhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCc
Confidence 233333333333333222 1233333333222 23344456678889999999999999999873 2
Q ss_pred ---CeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhc
Q 007808 165 ---NVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANN 241 (589)
Q Consensus 165 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (589)
+....+.++.+..+. +..+..++......-+ ...+...+...|.+++|..+|++... .....+.+ +...
T Consensus 1018 fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~-~~~A~~VL---ie~i 1089 (1630)
T 1xi4_A 1018 FSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV-NTSAVQVL---IEHI 1089 (1630)
T ss_pred ccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC-HHHHHHHH---HHHH
Confidence 224566677777776 5566666666555333 44578888999999999999999742 11222222 2378
Q ss_pred CCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007808 242 GDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYA 321 (589)
Q Consensus 242 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 321 (589)
+++++|.++.++.. +..+|..+..++...|++++|++.|.+. -|...|..++.++.+.|+++++.+.+...
T Consensus 1090 ~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred hhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 89999999999874 4678889999999999999999999663 46778888999999999999999999998
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHH
Q 007808 322 EYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIG 401 (589)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 401 (589)
.+.. ++....+.++.+|++.+++++..... ..++...|..+...|...|++++|..+|... ..|..
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~r 1226 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 1226 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHH
Confidence 8765 33334446999999999998655443 4556677888999999999999999999985 37899
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHH
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVE 481 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 481 (589)
++.++.+.|++++|.+.+++. .+..+|..+..++...|++..|........ .++..+..++..|.+.|.++
T Consensus 1227 LA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999877 456889999999999999999999877643 34555678899999999999
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHhhc--CChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC-----C
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIYGDL--GRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL-----D 554 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~ 554 (589)
+|+.+++.++.++|.+...+..|+.+|.+. ++..+++++|..-. ++.| +
T Consensus 1298 EAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri------------------------ni~k~~r~~e 1353 (1630)
T 1xi4_A 1298 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV------------------------NIPKVLRAAE 1353 (1630)
T ss_pred HHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------------------------ccchHhHHHH
Confidence 999999999999999999999999988874 56777777765432 3333 7
Q ss_pred chHHHHHHHHHHHHcccCCCCc
Q 007808 555 RKSIVRAEANMIKLLPQNNHPL 576 (589)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~~~ 576 (589)
++..+..+..+|.+.|+.+.|+
T Consensus 1354 ~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1354 QAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHhcccHHHHH
Confidence 7888888999998888887665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-19 Score=176.37 Aligned_cols=319 Identities=13% Similarity=-0.014 Sum_probs=226.1
Q ss_pred hCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHH-HhcccCC-----C--ChhhHHHHHHHHHhcCCHHHHHH
Q 007808 178 SCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARK-LFDQMPK-----K--DVISWNTMLSGYANNGDVEECKR 249 (589)
Q Consensus 178 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~A~~ 249 (589)
..+.++.+...++.+...+.. ++...|++++|.. .+++..+ | +...+..+...+.+.|++++|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 85 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVL 85 (368)
T ss_dssp ----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHH
Confidence 334455555555555443332 3445689999998 8887664 2 35668889999999999999999
Q ss_pred HHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 007808 250 LFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGY 326 (589)
Q Consensus 250 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 326 (589)
.|+++.+ .+..+|..+..++...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+.+...
T Consensus 86 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 86 LFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999875 356788999999999999999999999999875 45678899999999999999999999999998652
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCA 405 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 405 (589)
.+...+..+... .. ...+ ...+..+...+ ..|++++|+..++++.+..... +..++..+...
T Consensus 164 -~~~~~~~~~~~~-------~~-------~~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 164 -AYAHLVTPAEEG-------AG-------GAGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226 (368)
T ss_dssp -TTGGGCC------------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred -CcHHHHHHHHHH-------hh-------hhcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence 222222111100 00 0000 01112223333 7899999999999998853111 47788899999
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 483 (589)
+...|++++|...++++... .+.+...+..++.+|.+.|++++|++.++++ ...| +...+..+..++.+.|++++|
T Consensus 227 ~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 304 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998763 2345778999999999999999999999987 3344 577888899999999999999
Q ss_pred HHHHHHHHccCCCC-----------CcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 484 ELALERLTELEPKN-----------PANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 484 ~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
...+++++++.|++ +.+|..++.+|...|++++|..++++.
T Consensus 305 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 99999999998887 689999999999999999999987644
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-18 Score=171.54 Aligned_cols=332 Identities=14% Similarity=0.049 Sum_probs=275.6
Q ss_pred CCCHHHHHHHHHhCCC-CChhHHHHHHHHHhc----CCChHHHHHHhcccCC-CChhhHHHHHHHHHh----cCCHHHHH
Q 007808 179 CGDIVSARCLFELAPE-RDVILWNTIVSGYID----VRNMIEARKLFDQMPK-KDVISWNTMLSGYAN----NGDVEECK 248 (589)
Q Consensus 179 ~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~ 248 (589)
.+++++|..+|+...+ .+...+..+...|.. .++.++|.+.|++..+ .+...+..+...|.. .+++++|.
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 4555566555554433 266778888888888 8999999999998875 567788888888988 88999999
Q ss_pred HHHhhCCC-CCchhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCChhHHHHHHH
Q 007808 249 RLFEEMPE-RNVFSWNGLIGGYAN----NGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR----LGALDFSKWVHV 319 (589)
Q Consensus 249 ~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~ 319 (589)
..|++..+ .+...+..|...|.. .+++++|++.|++..+.+ +...+..+...+.. .++.++|...+.
T Consensus 136 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 136 KWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 99998876 466778888888887 789999999999999876 56677778888887 899999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChHHHHHHHHHHHHC
Q 007808 320 YAEYNGYQGNVCVGNALIDMYAK----CGIIENAVDVFNSMDT-KDLITWNTIISGLAM----HGRGAGALSLFHEMKNA 390 (589)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~ 390 (589)
+..+.+ +...+..+...|.. .++.++|...|++..+ .++..+..+...|.. .+++++|+.+|++..+.
T Consensus 212 ~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 212 KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 999875 56677888888886 8899999999998764 466778888888888 89999999999999876
Q ss_pred CCCCCHhHHHHHHHHHhcc-----CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHhhCCCCC
Q 007808 391 GEMPDGITFIGILCACTHM-----GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG---RLAEAVDFVKRMPIEA 462 (589)
Q Consensus 391 ~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p 462 (589)
| +...+..+...|... +++++|..+|++..+. .+...+..+...|...| ++++|++.|++.....
T Consensus 289 ~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~ 361 (490)
T 2xm6_A 289 G---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG 361 (490)
T ss_dssp T---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT
T ss_pred C---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC
Confidence 4 455667777888776 8999999999998753 35567788888888867 7899999999884345
Q ss_pred CHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh----cCChHHHHHHHHHhhh
Q 007808 463 DAVIWANLLGSCRV----YKNVELAELALERLTELEPKNPANFVMLSNIYGD----LGRWKDVARIKVAMRD 526 (589)
Q Consensus 463 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 526 (589)
+...+..+...|.. .+++++|.+.|+++.+.+ ++.++..|+.+|.. .+++++|...+++..+
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 77888888888888 899999999999999865 47899999999998 8999999999999973
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-18 Score=166.61 Aligned_cols=345 Identities=11% Similarity=0.113 Sum_probs=142.2
Q ss_pred ccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 007808 46 QLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCL 125 (589)
Q Consensus 46 ~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 125 (589)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 568899999999999665 48999999999999999999999653 5778999999999999999999998887
Q ss_pred HHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHH
Q 007808 126 VLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVS 205 (589)
Q Consensus 126 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 205 (589)
.++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|..++..|...|++++|..+|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7764 45578899999999999999999988864 66678888888888888888888888866 46778888
Q ss_pred HHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHH
Q 007808 206 GYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRM 285 (589)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 285 (589)
++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++++|+.+++..
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888888888888777 367778888888888888888876666544 33333445677777777777777777777
Q ss_pred HHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------
Q 007808 286 LTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT------- 358 (589)
Q Consensus 286 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 358 (589)
+... +.....|+.+.-.+++- ++ +++.+.++.|..-..
T Consensus 234 L~le--~ah~~~ftel~il~~ky-~p--------------------------------~k~~ehl~~~~~~ini~k~~~~ 278 (449)
T 1b89_A 234 LGLE--RAHMGMFTELAILYSKF-KP--------------------------------QKMREHLELFWSRVNIPKVLRA 278 (449)
T ss_dssp TTST--TCCHHHHHHHHHHHHTT-CH--------------------------------HHHHHHHHHHSTTSCHHHHHHH
T ss_pred hCCc--HHHHHHHHHHHHHHHhc-CH--------------------------------HHHHHHHHHHHHHhcCcHHHHH
Confidence 6543 22333444443333322 11 223333333332211
Q ss_pred -CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHH---HHHHHHHHhHHhcCCCCChHH
Q 007808 359 -KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVE---EGLSYFQSMAMDYSIVPQIEH 434 (589)
Q Consensus 359 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~ 434 (589)
.+...|..+...|.+.++++.|... |.+. +|+...-........+..+.+ +|..++- .. .|..
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~---~p~~-- 345 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF---KPLL-- 345 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH---CGGG--
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc---CHHH--
Confidence 1456788888888888888887763 4442 333322222223333333333 3333332 21 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
.+-|+.++...=+...+..++++.+
T Consensus 346 l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 346 LNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCcHHHHHHHHHcC
Confidence 5556666666666777777776663
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.1e-19 Score=164.66 Aligned_cols=246 Identities=13% Similarity=0.039 Sum_probs=134.6
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCc----hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChh
Q 007808 237 GYANNGDVEECKRLFEEMPERNV----FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALD 312 (589)
Q Consensus 237 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 312 (589)
-....|++..|+..++.....++ .....+.++|...|++++|+..++. . -+|+..++..+...+...++.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~--~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S--SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T--SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c--CChhHHHHHHHHHHHcCCCcHH
Confidence 34456777777777766554321 2334456677777777777765543 1 2455566666666666667777
Q ss_pred HHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 007808 313 FSKWVHVYAEYNGY-QGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAG 391 (589)
Q Consensus 313 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 391 (589)
.|.+.++.+...+. |.+...+..+...+...|++++|++.+++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 77777776666553 33455555556666666666666666665 334555555666666666666666666666553
Q ss_pred CCCCHhHH---HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHH
Q 007808 392 EMPDGITF---IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWA 468 (589)
Q Consensus 392 ~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 468 (589)
.|+.... ..++..+...|++++|..+|+++... .+.+...++
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----------------------------------~p~~~~~~~ 204 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------------------------CSPTLLLLN 204 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------------SCCCHHHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----------------------------------CCCcHHHHH
Confidence 2332211 11112222334455555555444432 223444455
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH-HHHHHHHhh
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD-VARIKVAMR 525 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~ 525 (589)
.+..++.+.|++++|+..++++++++|+++.++..++.++...|++++ +.++++++.
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555544 344555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=175.42 Aligned_cols=273 Identities=10% Similarity=-0.045 Sum_probs=189.6
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 007808 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALI 337 (589)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 337 (589)
+...|..+...+.+.|++++|+..|+++++.. +.+...+..+..++...|++++|...++++.+.. +.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~-------- 132 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNN-------- 132 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC--------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC--------
Confidence 34557777788888888888888888887764 3345566666666666666666666666665543 223
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----------HhHHHHHHHHH
Q 007808 338 DMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-----------GITFIGILCAC 406 (589)
Q Consensus 338 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----------~~~~~~l~~~~ 406 (589)
..+|..++.+|...|++++|+..++++.+. .|+ ...+..+...+
T Consensus 133 -----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 133 -----------------------LKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC------------------
T ss_pred -----------------------HHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHH
Confidence 344555555666666666666666666652 232 12233457788
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHhcCCCHHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIE-ADAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
...|++++|..+++++.......++...+..++..|.+.|++++|++.++++ ... .+...|..+..+|...|++++|+
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999865433236888999999999999999999999987 333 46788999999999999999999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHH
Q 007808 485 LALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEAN 564 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~ 564 (589)
..|++++++.|+++.++..++.+|.+.|++++|+..++++.+.. |+..-. ........+..++..|+.
T Consensus 268 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~----------~~~~~~~~~~~~~~~l~~ 335 (365)
T 4eqf_A 268 EAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ--RKSRNQ----------QQVPHPAISGNIWAALRI 335 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HCC----------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccCCC----------cccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986211 100000 000011125789999999
Q ss_pred HHHHcccCCCCcch
Q 007808 565 MIKLLPQNNHPLTF 578 (589)
Q Consensus 565 ~~~~~~~~~~~~~~ 578 (589)
++..+|+.+.+...
T Consensus 336 ~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 336 ALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCcHHHHHHH
Confidence 99999987655443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=167.01 Aligned_cols=218 Identities=11% Similarity=0.054 Sum_probs=180.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCc
Q 007808 333 GNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGL 411 (589)
Q Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~ 411 (589)
...+.++|...|+++.|...++....|+..++..+...+...++.++|++.++++...+..|+ ...+..+...+...|+
T Consensus 37 ~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~ 116 (291)
T 3mkr_A 37 DVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN 116 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC
Confidence 344667788888888888877765555667788888889999999999999999998766674 4556667788999999
Q ss_pred HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHH---HHHHHHHhcCCCHHHHHHHH
Q 007808 412 VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIW---ANLLGSCRVYKNVELAELAL 487 (589)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~ 487 (589)
+++|++.+++ +.+...+..++.+|.+.|++++|.+.++++ ...|+.... ...+..+...|++++|...|
T Consensus 117 ~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~ 189 (291)
T 3mkr_A 117 PDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIF 189 (291)
T ss_dssp HHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 9999999875 467888999999999999999999999998 345654322 22334455679999999999
Q ss_pred HHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 488 ERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 488 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
+++++..|+++..+..++.++.+.|++++|++.++++. +++|+++.++..++.++.
T Consensus 190 ~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al------------------------~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL------------------------DKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 789999999999999999
Q ss_pred HcccCCC-CcchHhh
Q 007808 568 LLPQNNH-PLTFIVV 581 (589)
Q Consensus 568 ~~~~~~~-~~~~~~~ 581 (589)
..|+..+ +.+++..
T Consensus 246 ~~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 246 HLGKPPEVTNRYLSQ 260 (291)
T ss_dssp HTTCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHH
Confidence 9999876 4456543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-18 Score=172.71 Aligned_cols=352 Identities=11% Similarity=-0.035 Sum_probs=191.9
Q ss_pred chHHHhHHHHHHHcCCChHHHHHHHccCCC------------CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHH
Q 007808 134 NIFVGTALIELYSTGKAIEAAYKVFGEMDE------------RNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWN 201 (589)
Q Consensus 134 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 201 (589)
....|+.|...+...|++++|++.|++..+ ....+|+.+...|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~------- 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH------- 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Confidence 356778888888888888888887765421 1223455555555555555555555443210
Q ss_pred HHHHHHhcCCChHHHHHHhcccCC----CChhhHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-CchhHHHHHHH---H
Q 007808 202 TIVSGYIDVRNMIEARKLFDQMPK----KDVISWNTMLSGYANN--GDVEECKRLFEEMPE--R-NVFSWNGLIGG---Y 269 (589)
Q Consensus 202 ~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~ 269 (589)
+...... ....++..+..++.+. +++++|...|++..+ | +...+..+..+ +
T Consensus 123 -----------------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l 185 (472)
T 4g1t_A 123 -----------------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL 185 (472)
T ss_dssp -----------------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----------------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 0000000 1122333333333322 245555555555442 2 22233333222 2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 270 ANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACA----RLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
...++.++|++.+++.++.. +.+...+..+...+. ..++.++|...++++.... +.+..++..+...|...|+
T Consensus 186 ~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 262 (472)
T 4g1t_A 186 DNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDE 262 (472)
T ss_dssp HHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCc
Confidence 33455555555555555543 122333333332222 2234555555555555543 3344455555555666666
Q ss_pred hHHHHHHHhhCCC--C-CcchHHHHHHHHHh-------------------CCChHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 007808 346 IENAVDVFNSMDT--K-DLITWNTIISGLAM-------------------HGRGAGALSLFHEMKNAGEMPDGITFIGIL 403 (589)
Q Consensus 346 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~-------------------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 403 (589)
+++|...|++..+ | +..++..+..+|.. .+.+++|...+++..+.. +.+..++..+.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg 341 (472)
T 4g1t_A 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILA 341 (472)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHH
Confidence 6666655555431 2 33344444433321 234677888888887742 33556788889
Q ss_pred HHHhccCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHH-HHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcC
Q 007808 404 CACTHMGLVEEGLSYFQSMAMDYSIVPQIE----HYGCMVD-LLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRVY 477 (589)
Q Consensus 404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 477 (589)
..+...|++++|...|++++.. .|+.. .+..+.. .+...|++++|++.|++. .+.|+......
T Consensus 342 ~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~-------- 410 (472)
T 4g1t_A 342 SLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK-------- 410 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH--------
T ss_pred HHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH--------
Confidence 9999999999999999988753 33322 2333333 235788999999999887 56676543322
Q ss_pred CCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 478 KNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 478 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
....+.+++++.++.+|+++.+|..|+.+|...|++++|++.|++..
T Consensus 411 -~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 411 -MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp -HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred -HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23456678888999999999999999999999999999999999986
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=170.43 Aligned_cols=271 Identities=13% Similarity=-0.043 Sum_probs=214.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007808 227 DVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLS 303 (589)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 303 (589)
+...+..+...+.+.|++++|...|+++.+ .+..+|..+..+|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 456688899999999999999999999875 467889999999999999999999999999975 345788999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSL 383 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 383 (589)
++...|++++|...++++.+.. +.+...+..+. .....+..+...+...|++++|+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC----------------------------------------CCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999999999988754 11111111110 1223455667788889999999999
Q ss_pred HHHHHHCCCC-CCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC
Q 007808 384 FHEMKNAGEM-PDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIE 461 (589)
Q Consensus 384 ~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 461 (589)
++++.+.... ++..++..+...+...|++++|.+.++++.+. .+.+..+|..++.+|.+.|++++|++.++++ ...
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999885321 15778889999999999999999999998764 2345788999999999999999999999987 344
Q ss_pred C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC------------CCcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 462 A-DAVIWANLLGSCRVYKNVELAELALERLTELEPK------------NPANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 462 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
| +...+..+..+|...|++++|...|++++++.|+ +...+..++.++...|+.+.+.++.++
T Consensus 278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 5 5788889999999999999999999999998876 367899999999999999999887665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=165.66 Aligned_cols=379 Identities=12% Similarity=0.035 Sum_probs=162.9
Q ss_pred cCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCC-
Q 007808 147 TGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPK- 225 (589)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 225 (589)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+++++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 456677777777777444 36777777777777777777777553 3555777777777777777777776665554
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 007808 226 -KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSA 304 (589)
Q Consensus 226 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~ 304 (589)
+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.+
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~ 157 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLAST 157 (449)
T ss_dssp ------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT----------TCHHHHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHH
Confidence 445666777777777777777666664 356667777777777777777777777754 146677777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 007808 305 CARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLF 384 (589)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 384 (589)
+.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.++
T Consensus 158 L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp HHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 77777777777777766 256677777777777777777766655544 33333446778888888888888888
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHh--ccCcHHHHHHHHHHhHHhcCCCC------ChHHHHHHHHHHHhcCCHHHHHHHHh
Q 007808 385 HEMKNAGEMPDGITFIGILCACT--HMGLVEEGLSYFQSMAMDYSIVP------QIEHYGCMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 385 ~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (589)
+...... +-....|+.+.-.|+ +.+++.+.++.|. .+..++| +...|..++..|...++++.|....-
T Consensus 231 e~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 231 EAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 8877532 224445555555554 4455555555544 2224444 46678899999999999999887665
Q ss_pred hC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc
Q 007808 457 RM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC 535 (589)
Q Consensus 457 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 535 (589)
+- +..-+...|--+ ..+-.+.+--.+...--++.. |...+.|..++...=+...+...+++.-.-++-...-
T Consensus 307 ~h~~~a~~~~~f~~~---~~kv~n~elyYkai~fyl~~~---p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl- 379 (449)
T 1b89_A 307 NHPTDAWKEGQFKDI---ITKVANVELYYRAIQFYLEFK---PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYL- 379 (449)
T ss_dssp HSTTTTCCHHHHHHH---HHHCSSTHHHHHHHHHHHHHC---GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHH-
T ss_pred hCChhhhhhHHHHHH---HhchhHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHH-
Confidence 55 233344444333 333444333333222223333 3456667777766667777777766653222111000
Q ss_pred ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 536 SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 536 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
..+ .+-|+..+-+.|-.+|-+..+.
T Consensus 380 -----------~~v-~~~n~~~vnealn~l~ieeed~ 404 (449)
T 1b89_A 380 -----------RSV-QNHNNKSVNESLNNLFITEEDY 404 (449)
T ss_dssp -----------HHH-HTTCCHHHHHHHHHHHHHTTCH
T ss_pred -----------HHH-HHhhHHHHHHHHHHHHHhhhhH
Confidence 001 2346667777777777655444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-16 Score=162.67 Aligned_cols=412 Identities=8% Similarity=0.040 Sum_probs=277.7
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC--CC
Q 007808 88 FTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE--RN 165 (589)
Q Consensus 88 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 165 (589)
|++..+.. +-+...|..++.. ...|++++|..+|+++++.. +.+...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 34444433 3356678888874 67789999999999998763 45677888888888889999999999998876 55
Q ss_pred eehHHHHHHHH-HhCCCHHHHHH----HHHhCC-----C-CChhHHHHHHHHHhc---------CCChHHHHHHhcccCC
Q 007808 166 VVVWTSMINGY-ISCGDIVSARC----LFELAP-----E-RDVILWNTIVSGYID---------VRNMIEARKLFDQMPK 225 (589)
Q Consensus 166 ~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 225 (589)
...|..++... ...|+.++|.+ +|+... . .+...|...+....+ .|+++.|..+|++..+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 55666666433 34566666554 454431 1 244556555554433 4666666666666654
Q ss_pred -CCh---hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHH------HHcC--CCCC
Q 007808 226 -KDV---ISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRM------LTEG--RVFP 293 (589)
Q Consensus 226 -~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~--~~~p 293 (589)
|.. ..|..........|. ..+..++. ...+++.+|..++... .+.. .++|
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 221 112111111000000 00111110 1234556666666552 2211 0233
Q ss_pred c--------HHHHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCChH---
Q 007808 294 N--------DATIVTVLSACARL----GAL----DFSKWVHVYAEYNGYQGNVCVGNALIDMYAK-------CGIIE--- 347 (589)
Q Consensus 294 ~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~--- 347 (589)
+ ...|...+...... ++. ..+...|+++.... +.+...|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 3 13344443322221 222 36677888888763 5678888888888875 79987
Q ss_pred ----HHHHHHhhCCC---C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHhccCcHHHHHH
Q 007808 348 ----NAVDVFNSMDT---K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG--ITFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 348 ----~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~ 417 (589)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.+
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999998764 3 567899999999999999999999999998 46643 478888888889999999999
Q ss_pred HHHHhHHhcCCCCC-hHHHHHHHHH-HHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Q 007808 418 YFQSMAMDYSIVPQ-IEHYGCMVDL-LARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 418 ~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
+|++..+. .|+ ...|...+.. +...|+.++|..+|+++ ...| +...|..++..+.+.|+.++|..+|+++++.
T Consensus 378 ~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 378 IFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 99999753 333 3333332222 34689999999999987 3344 5788989999999999999999999999998
Q ss_pred CCCCCc----chHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 494 EPKNPA----NFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 494 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
.|.++. .|...+......|+.+.+..+.+++.+
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 887665 777888888899999999999998853
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-18 Score=163.69 Aligned_cols=260 Identities=10% Similarity=-0.029 Sum_probs=193.7
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHH
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID 338 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 338 (589)
...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+...+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~--- 94 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA--- 94 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH---
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH---
Confidence 3456667777888888888888888887764 3355566666667777777777777777666653 333444444
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-hHHHH-------------H-H
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-ITFIG-------------I-L 403 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~-------------l-~ 403 (589)
+...+...|++++|+..++++.+. .|+. ..+.. + .
T Consensus 95 ----------------------------la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 95 ----------------------------LAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp ----------------------------HHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC-------------------
T ss_pred ----------------------------HHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHH
Confidence 444455555555555555555543 2221 11211 2 2
Q ss_pred H-HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCH
Q 007808 404 C-ACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNV 480 (589)
Q Consensus 404 ~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 480 (589)
. .+...|++++|..+++++... .+.+...+..++..|.+.|++++|++.++++ ...| +...+..+...+...|++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 2 377889999999999998764 2346788889999999999999999999987 3334 577888899999999999
Q ss_pred HHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC------
Q 007808 481 ELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD------ 554 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------ 554 (589)
++|...++++++..|+++.++..++.+|.+.|++++|.+.++++. +.+|+
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~------------------------~~~~~~~~~~~ 278 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI------------------------YMQVGGTTPTG 278 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHTTSCC---
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH------------------------HhCCccccccc
Confidence 999999999999999999999999999999999999999999986 45566
Q ss_pred ------chHHHHHHHHHHHHcccCCCCcchHh
Q 007808 555 ------RKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 555 ------~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
++.++..++.++..+|+.++|.....
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 89999999999999999987766654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-17 Score=166.15 Aligned_cols=311 Identities=10% Similarity=-0.017 Sum_probs=205.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CchhHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCc
Q 007808 228 VISWNTMLSGYANNGDVEECKRLFEEMPE-------R----NVFSWNGLIGGYAN--NGLFFEVLDAFKRMLTEGRVFPN 294 (589)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~p~ 294 (589)
..+|+.+..+|...|++++|...+++..+ + ...++..+..++.. .+++++|++.|++.++.. |+
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~---p~ 170 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK---PK 170 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---TT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC---CC
Confidence 34566666777777777777666665432 1 23455555555544 467999999999999865 44
Q ss_pred -HHHHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCC---CCCcch
Q 007808 295 -DATIVTVLSA---CARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK----CGIIENAVDVFNSMD---TKDLIT 363 (589)
Q Consensus 295 -~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~---~~~~~~ 363 (589)
...+..+..+ +...++.++|.+.++++.+.+ +.+..++..+...+.. .|++++|.+.+++.. ..+..+
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~ 249 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHH
Confidence 3444444433 445678888999999988875 4456666666655544 467788999998765 346678
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcc-------------------CcHHHHHHHHHHhH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHM-------------------GLVEEGLSYFQSMA 423 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~ 423 (589)
+..+...|...|++++|+..+++..+. .| +..++..+..+|... +.++.|...++++.
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 889999999999999999999999884 45 455666666555432 33567777777775
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHH----HHHHHH-HHhcCCCHHHHHHHHHHHHccCCCC
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVI----WANLLG-SCRVYKNVELAELALERLTELEPKN 497 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~----~~~l~~-~~~~~g~~~~A~~~~~~~~~~~p~~ 497 (589)
... +.+...+..+...|...|++++|++.|+++ ...|+... +..+.. .....|++++|+..|++++++.|++
T Consensus 328 ~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 328 EAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp HHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred hcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 432 233556777888888999999999888876 33444322 222222 2357788889999999999888874
Q ss_pred CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 498 PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
... .+....+.+++++. ++.+|+++.++..||.+|...|+..+|+.
T Consensus 406 ~~~----------~~~~~~l~~~~~~~------------------------l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 406 REK----------EKMKDKLQKIAKMR------------------------LSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHH----------HHHHHHHHHHHHHH------------------------HHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHH----------HHHHHHHHHHHHHH------------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 321 11223334444443 37899999999999999999999999988
Q ss_pred hHh
Q 007808 578 FIV 580 (589)
Q Consensus 578 ~~~ 580 (589)
...
T Consensus 452 ~y~ 454 (472)
T 4g1t_A 452 DSE 454 (472)
T ss_dssp ---
T ss_pred HHH
Confidence 754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.4e-18 Score=161.94 Aligned_cols=274 Identities=12% Similarity=-0.036 Sum_probs=217.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 007808 227 DVISWNTMLSGYANNGDVEECKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLS 303 (589)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~ 303 (589)
+...+..+...+...|++++|..+|+++.+ .+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHH
Confidence 445677888999999999999999999874 356788889999999999999999999999875 456778888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHH--HHHhCCChHHHH
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIIS--GLAMHGRGAGAL 381 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~ 381 (589)
.+...|++++|...+..+.+... .+...+..+.... ++......+.. .+...|++++|.
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------------------------CCTTSHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 99999999999999999988642 2222222221110 01111112212 366778899999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC
Q 007808 382 SLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI 460 (589)
Q Consensus 382 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 460 (589)
..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++..|...|++++|++.++++ ..
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999998853 346778888999999999999999999998763 2345778899999999999999999999987 33
Q ss_pred CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC------------CCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 461 EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPK------------NPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 461 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.| +...+..+...+...|++++|.+.+++++++.|+ ++..+..++.++.+.|++++|..++++.
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34 5778888999999999999999999999999998 6889999999999999999999998765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-16 Score=160.35 Aligned_cols=405 Identities=12% Similarity=0.073 Sum_probs=285.7
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 64 NVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 64 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+...|..++. +.+.|++++|..+|+++.+.. +.+...|...+..+.+.|++++|.++|+++++.. |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5678998898 478999999999999998763 4456689999999999999999999999998864 57667776664
Q ss_pred HH-HcCCChHHHHH----HHccCC-----C-CCeehHHHHHHHHHh---------CCCHHHHHHHHHhCCCC-Ch---hH
Q 007808 144 LY-STGKAIEAAYK----VFGEMD-----E-RNVVVWTSMINGYIS---------CGDIVSARCLFELAPER-DV---IL 199 (589)
Q Consensus 144 ~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~-~~---~~ 199 (589)
.. ...|+.++|.+ +|+... . .+...|...+....+ .|+++.|..+|++..+. +. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 33 34677777665 665542 1 345678888777665 78999999999987652 21 23
Q ss_pred HHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhh----------CC---CCC--------
Q 007808 200 WNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEE----------MP---ERN-------- 258 (589)
Q Consensus 200 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----------~~---~~~-------- 258 (589)
|..........|. ..+..++.. +.++++.|..++.. .. .|+
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 3322221111111 111111111 12334444443332 11 111
Q ss_pred chhHHHHHHHHHhC----CCh----HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-------cCChh-------HHHH
Q 007808 259 VFSWNGLIGGYANN----GLF----FEVLDAFKRMLTEGRVFPNDATIVTVLSACAR-------LGALD-------FSKW 316 (589)
Q Consensus 259 ~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~~-------~a~~ 316 (589)
...|...+...... ++. .+++.+|++++... +.+...|...+..+.+ .|+++ .|..
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 13455444332222 233 47888999998864 3456677777777765 68887 8999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-Cc-chHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 007808 317 VHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-DL-ITWNTIISGLAMHGRGAGALSLFHEMKNAGE 392 (589)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~ 392 (589)
+++++.+.-.|.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|..+|++..+.
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 999988633456788999999999999999999999998763 3 32 47888888889999999999999999974
Q ss_pred CC-CHhHHHHHHHH-HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCC--H
Q 007808 393 MP-DGITFIGILCA-CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM----PIEAD--A 464 (589)
Q Consensus 393 ~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~ 464 (589)
.| +...|...+.. +...|++++|..+|++.++.. +.++..|..++..+.+.|+.++|..+|+++ +..|+ .
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 33 33333333222 346899999999999998753 345788999999999999999999999987 22332 4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
..|...+......|+.+.+..+++++.+..|+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 57888888888899999999999999998885
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-17 Score=148.27 Aligned_cols=232 Identities=11% Similarity=-0.023 Sum_probs=178.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C-------cchHHH
Q 007808 297 TIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-D-------LITWNT 366 (589)
Q Consensus 297 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~ 366 (589)
.+..+...+...|++++|...+..+.+.. .+...+..+..++...|++++|.+.+++..+ | + ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555555555555555555555554 4455556666666666666666666665442 1 1 467778
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG 446 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 446 (589)
+...+...|++++|+..|+++.+. .|+. ..+...|++++|...++++... .+.+...+..++..+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence 888899999999999999998884 4553 3456678899999999988652 2234667888999999999
Q ss_pred CHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 447 RLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 447 ~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
++++|++.++++ .. +.+...+..+..++...|++++|...++++++.+|+++..+..++.+|.+.|++++|.+.++++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999988 33 3467888889999999999999999999999999999999999999999999999999999998
Q ss_pred hhCCCccCCccceeeeCCeeeeeccccC------CCchHHHHHHHHH
Q 007808 525 RDTGFKKLPGCSSIEVNEVVMLGCLSRE------LDRKSIVRAEANM 565 (589)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~~~~~~~l~~~ 565 (589)
. +++ |++..+...++.+
T Consensus 234 ~------------------------~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 234 R------------------------TKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp H------------------------HHHHHHHTTTTHHHHHHHHHHT
T ss_pred H------------------------HhChhhcCCCchHHHHHHHHHh
Confidence 6 455 8999988888765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-17 Score=146.03 Aligned_cols=195 Identities=16% Similarity=0.127 Sum_probs=128.3
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCM 438 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 438 (589)
+...+..+...+.+.|++++|+..|++..+. .| +...+..+..++.+.|++++|+..++++++. .+.+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4455666666677777777777777777663 33 4556666667777777777777777776542 12235566667
Q ss_pred HHHHHhc-----------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHH
Q 007808 439 VDLLARA-----------GRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 439 ~~~~~~~-----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 505 (589)
..+|.+. |++++|+..+++. ...| +...+..+..++...|++++|+..|+++++++ +++..+..++
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la 158 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHH
Confidence 7777777 7788888777776 3344 45666777777778888888888888888877 7777888888
Q ss_pred HHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 506 NIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 506 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
.+|...|++++|+..++++. +++|+++.++..++.++..+|+.++|+......+
T Consensus 159 ~~~~~~g~~~~A~~~~~~al------------------------~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKAL------------------------EQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHH------------------------HHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHH------------------------HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888887775 6778888888888888888888877777665443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=139.82 Aligned_cols=195 Identities=15% Similarity=0.002 Sum_probs=155.1
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHH
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGI 402 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l 402 (589)
|++...+..+...+.+.|++++|...|++..+ .+...+..+..++.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 56677788888888999999999999987653 35678888899999999999999999999885 45 56778888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHH
Q 007808 403 LCACTHM-----------GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANL 470 (589)
Q Consensus 403 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 470 (589)
..++... |++++|+..+++.++. .+.+...+..+..+|...|++++|+..|+++ ....+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8899999 9999999999999753 2234778889999999999999999999987 222778889999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..++...|++++|+..|+++++++|+++.++..++.++.+.|++++|++.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988763
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-15 Score=141.80 Aligned_cols=240 Identities=8% Similarity=-0.065 Sum_probs=162.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCc----chHHHHHHHHHhCCCh
Q 007808 304 ACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT--KDL----ITWNTIISGLAMHGRG 377 (589)
Q Consensus 304 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~ 377 (589)
.+...|+++.|...+..+.+.. +.+...+..+..+|...|++++|...|++..+ ++. ..|..+...+...|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 3334444444444444443332 22333444555555555666666555554432 122 2367778888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhh
Q 007808 378 AGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKR 457 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (589)
++|+..|++..+.. +.+...+..+...+...|++++|...++++... .+.+...+..+...+...+++++|++.+++
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888742 335577888888899999999999999888642 233466777777344445699999999988
Q ss_pred C-CCCC-CHHHHHHHHHHHhcCCC---HHHHHHHHHHHHccC---CCC-----CcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 458 M-PIEA-DAVIWANLLGSCRVYKN---VELAELALERLTELE---PKN-----PANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 458 ~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+ ...| +...+..+..++...|+ +++|...+++++++. |+. ..++..++.+|...|++++|.+.++++
T Consensus 168 a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7 3344 46667777777777777 888999999999865 442 257888999999999999999999998
Q ss_pred hhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 525 RDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
. +++|+++.+...++.+....+.
T Consensus 248 l------------------------~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 248 L------------------------ALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp H------------------------HHCTTCHHHHHHHC--------
T ss_pred H------------------------hcCccHHHHHHHhhhhhccccc
Confidence 6 7899999999999988765543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-15 Score=151.99 Aligned_cols=337 Identities=10% Similarity=-0.006 Sum_probs=150.3
Q ss_pred HHHHHHhCCCHHHHHHHHHhCCCC-ChhHHHHHHHHHhcCCCh---HHHHHHhcccCCCChhhHHHHHHHHHhcC-----
Q 007808 172 MINGYISCGDIVSARCLFELAPER-DVILWNTIVSGYIDVRNM---IEARKLFDQMPKKDVISWNTMLSGYANNG----- 242 (589)
Q Consensus 172 l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~----- 242 (589)
+...+.+.|++++|.++|+...++ +...+..+...+...|+. ++|...|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 455566667777777777655432 334444455555555555 56666666555444444555555343333
Q ss_pred CHHHHHHHHhhCCCC-CchhHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 007808 243 DVEECKRLFEEMPER-NVFSWNGLIGGYANNGLF---FEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVH 318 (589)
Q Consensus 243 ~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (589)
+.++|...|++..++ +...+..|...|...+.. .++.+.+......| +......+...+...+.++.+....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcccCHHHH
Confidence 455566666555442 334555555555554432 22333444443333 1223334444444444443333332
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhhCCCC---CcchHHHHHHHHHhC----CChHHHHHHHHHHH
Q 007808 319 VYAEYNGYQGNVCVGNALIDMYAKCG---IIENAVDVFNSMDTK---DLITWNTIISGLAMH----GRGAGALSLFHEMK 388 (589)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~ 388 (589)
....+.-...++..+..|...|...| +.++|++.|++..+. +...+..+...|... +++++|+.+|++..
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 22222212222335555555555555 555566555554322 112224444444333 45556666665554
Q ss_pred HCCCCCCHhHHHHHHHH-H--hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-----CHHHHHHHHhhCCC
Q 007808 389 NAGEMPDGITFIGILCA-C--THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG-----RLAEAVDFVKRMPI 460 (589)
Q Consensus 389 ~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~ 460 (589)
.| +...+..+... + ...+++++|.++|++.... -+...+..|...|. .| ++++|++.|++..
T Consensus 245 -~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~----g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 245 -PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA----DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp -GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred -CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 21 33334444443 2 3455666666666555432 14444555555554 33 5666666666555
Q ss_pred CCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh----cCChHHHHHHHHHh
Q 007808 461 EADAVIWANLLGSCRV----YKNVELAELALERLTELEPKNPANFVMLSNIYGD----LGRWKDVARIKVAM 524 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 524 (589)
..+......+...|.. ..++++|...|+++.+. .++.+...|+.+|.. ..+.++|..++++.
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 4445555555544443 23566666666665542 234555566666553 23555666665555
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-16 Score=142.52 Aligned_cols=216 Identities=12% Similarity=0.084 Sum_probs=163.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA 405 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 405 (589)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677778888888888888887653 356678888888999999999999999988752 3367788888899
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 483 (589)
+...|++++|.+.++++.+. .+.+...+..++..|.+.|++++|++.++++ .. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998764 2346778888999999999999999999987 33 34677888888999999999999
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHH
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEA 563 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 563 (589)
...++++++..|+++.++..++.+|...|++++|.+.++++. +++|+++.++..++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~------------------------~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI------------------------DIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH------------------------HHCTTCHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH------------------------ccCcchHHHHHHHH
Confidence 999999999999999999999999999999999999999986 78899999999988
Q ss_pred HHHHHccc
Q 007808 564 NMIKLLPQ 571 (589)
Q Consensus 564 ~~~~~~~~ 571 (589)
.+....|.
T Consensus 235 ~l~~~~~~ 242 (243)
T 2q7f_A 235 LLGHHHHH 242 (243)
T ss_dssp C-------
T ss_pred HHHhhccC
Confidence 88765543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=140.02 Aligned_cols=243 Identities=10% Similarity=-0.090 Sum_probs=191.2
Q ss_pred HhCCChHHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 007808 270 ANNGLFFEVLDAFKRMLTEGRVF--PNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIE 347 (589)
Q Consensus 270 ~~~g~~~~A~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (589)
...|++++|+..|+++.+..+.. .+...+..+...+...|++++|...+..+.+.. +.+...+..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 34578899999999988864111 235677788888899999999999999988875 557788888999999999999
Q ss_pred HHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007808 348 NAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 348 ~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 424 (589)
+|.+.|+++. +.+...+..+..+|...|++++|+..++++.+. .|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 9999998876 336778999999999999999999999999984 56555555555566777999999999988866
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 425 DYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD-----AVIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
.. +++...+. ++..+...++.++|++.++++ ...|+ ...+..+...+...|++++|...|+++++++|++.
T Consensus 173 ~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 42 34444444 677788889999999999887 33332 46778888999999999999999999999999764
Q ss_pred cchHHHHHHHhhcCChHHHHHHH
Q 007808 499 ANFVMLSNIYGDLGRWKDVARIK 521 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A~~~~ 521 (589)
...+.++...|++++|++.+
T Consensus 250 ---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 ---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHHhhHHHH
Confidence 44577888999999998876
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=145.64 Aligned_cols=244 Identities=11% Similarity=0.093 Sum_probs=178.5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 007808 260 FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDM 339 (589)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (589)
..|..+...+...|++++|++.++++++.. | .+...|+.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~---P----------------------------------~~~~a~~~~g~~ 140 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN---A----------------------------------ANYTVWHFRRVL 140 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC---T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC---c----------------------------------cCHHHHHHHHHH
Confidence 345555566666666666666666666543 2 234444445555
Q ss_pred HHhcCC-hHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHH
Q 007808 340 YAKCGI-IENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEE 414 (589)
Q Consensus 340 ~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 414 (589)
+...|+ +++|+..|+++. ..+...|..+..++...|++++|+..|+++++. .| +...|..+..++...|++++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHH
Confidence 555554 555555555544 224556677777777778888888888888874 44 56778888888888888888
Q ss_pred HHHHHHHhHHhcCCCCChHHHHHHHHHHHh-cCCHHHH-----HHHHhhC-CCCC-CHHHHHHHHHHHhcCC--CHHHHH
Q 007808 415 GLSYFQSMAMDYSIVPQIEHYGCMVDLLAR-AGRLAEA-----VDFVKRM-PIEA-DAVIWANLLGSCRVYK--NVELAE 484 (589)
Q Consensus 415 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~ 484 (589)
|+..++++++. .+.+...|+.+..+|.+ .|..++| ++.++++ .+.| +...|..+...+...| ++++|+
T Consensus 219 Al~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 219 ELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHH
Confidence 88888888753 23356778888888888 5665777 4777766 3455 5678888888888888 689999
Q ss_pred HHHHHHHccCCCCCcchHHHHHHHhhcC--------C-hHHHHHHHHHh-hhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 485 LALERLTELEPKNPANFVMLSNIYGDLG--------R-WKDVARIKVAM-RDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
+.++++ +.+|+++.++..++++|.+.| + +++|+++++++ . +++|.
T Consensus 297 ~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~------------------------~~DP~ 351 (382)
T 2h6f_A 297 NQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAK------------------------EKDTI 351 (382)
T ss_dssp HHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH------------------------TTCGG
T ss_pred HHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH------------------------HhCch
Confidence 999998 999999999999999999975 3 58999999998 5 78999
Q ss_pred chHHHHHHHHHHHHc
Q 007808 555 RKSIVRAEANMIKLL 569 (589)
Q Consensus 555 ~~~~~~~l~~~~~~~ 569 (589)
++..+..++..+...
T Consensus 352 r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 352 RKEYWRYIGRSLQSK 366 (382)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=138.28 Aligned_cols=236 Identities=9% Similarity=-0.033 Sum_probs=176.4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CC----hhHH
Q 007808 260 FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQ--GN----VCVG 333 (589)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 333 (589)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 345666677777777777777777777654 55566677777777777777777777776654311 11 4667
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcH
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLV 412 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 412 (589)
..+...|...|++++|...|++..+.++. ...+...|++++|...++++... .| +...+..+...+...|++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 77777888888888888888776532211 24566678889999999998884 44 456778888889999999
Q ss_pred HHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007808 413 EEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERL 490 (589)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 490 (589)
++|...++++... .+.+...+..++.+|.+.|++++|++.++++ ...| +...+..+..++...|++++|.+.++++
T Consensus 156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998764 2345778888999999999999999999987 3334 5778888889999999999999999999
Q ss_pred HccC------CCCCcchHHHHHH
Q 007808 491 TELE------PKNPANFVMLSNI 507 (589)
Q Consensus 491 ~~~~------p~~~~~~~~l~~~ 507 (589)
+++. |++...+..+..+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhChhhcCCCchHHHHHHHHHh
Confidence 9988 7766666555543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=138.91 Aligned_cols=245 Identities=11% Similarity=-0.032 Sum_probs=143.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--ChhHHHHHHHHH
Q 007808 263 NGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQG--NVCVGNALIDMY 340 (589)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~ 340 (589)
......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+..+.+.+..+ ....+..+...+
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334455555555555555555555543 1222244455555555555555555555555522111 122355566666
Q ss_pred HhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHH
Q 007808 341 AKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGL 416 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 416 (589)
...|++++|.+.|++.. +.+..+|..+...|...|++++|+..+++..+. .| +...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666544 224456666666677777777777777666653 33 4445555552333345777777
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCC---HHHHHHHHhhCC----CCCC------HHHHHHHHHHHhcCCCHHHH
Q 007808 417 SYFQSMAMDYSIVPQIEHYGCMVDLLARAGR---LAEAVDFVKRMP----IEAD------AVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~p~------~~~~~~l~~~~~~~g~~~~A 483 (589)
+.++++.+.. +.+...+..+..++...|+ +++|...++++. ..|+ ...+..+...|...|++++|
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777776431 2235566666667766666 666666665541 1233 24667778889999999999
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
.+.++++++++|+++.++..+..+....+.
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 999999999999999888888877766543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-15 Score=132.14 Aligned_cols=210 Identities=10% Similarity=0.015 Sum_probs=161.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA 405 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 405 (589)
+...+..++..+...|++++|.+.|+++. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34455556666666666666666666544 2345567777788888888888888888887742 3356778888888
Q ss_pred Hhcc-CcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHH
Q 007808 406 CTHM-GLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVE 481 (589)
Q Consensus 406 ~~~~-g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 481 (589)
+... |++++|...++++.. .+..|+ ...+..++.+|...|++++|++.++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 999999999988875 223343 567788888899999999999988887 3334 5777888888899999999
Q ss_pred HHHHHHHHHHccCC-CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHH
Q 007808 482 LAELALERLTELEP-KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVR 560 (589)
Q Consensus 482 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 560 (589)
+|...++++++..| +++..+..++.++...|+.++|..+++.+. +..|+++.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------------------------~~~p~~~~~~~ 220 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ------------------------ANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH------------------------HhCCCCHHHHH
Confidence 99999999999999 888888888888999999999999988885 56788888776
Q ss_pred HHHH
Q 007808 561 AEAN 564 (589)
Q Consensus 561 ~l~~ 564 (589)
.+.+
T Consensus 221 ~l~~ 224 (225)
T 2vq2_A 221 VLTG 224 (225)
T ss_dssp HHC-
T ss_pred Hhcc
Confidence 6643
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-15 Score=147.75 Aligned_cols=373 Identities=8% Similarity=0.000 Sum_probs=192.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCCh---HHHHHHHccCCCCCeehHHHHHHHHHhCC--
Q 007808 106 VLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAI---EAAYKVFGEMDERNVVVWTSMINGYISCG-- 180 (589)
Q Consensus 106 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-- 180 (589)
+...+.+.|++++|.+.|++..+.|. ...+..|...|...|+. ++|...|++..+.++..+..+...+...|
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 33444555666666666666666552 22333344444455555 66666666665555555555555444443
Q ss_pred ---CHHHHHHHHHhCCCC-ChhHHHHHHHHHhcCCChHHH---HHHhcccCC-CChhhHHHHHHHHHhcC----CHHHHH
Q 007808 181 ---DIVSARCLFELAPER-DVILWNTIVSGYIDVRNMIEA---RKLFDQMPK-KDVISWNTMLSGYANNG----DVEECK 248 (589)
Q Consensus 181 ---~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a---~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~ 248 (589)
++++|..+|+...++ +...+..+...|...+..+++ .+.+....+ .+......+...|...+ ..+.+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 455666666554433 333445555555444432222 222221111 23444444555555544 233344
Q ss_pred HHHhhCCCCCchhHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 007808 249 RLFEEMPERNVFSWNGLIGGYANNG---LFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNG 325 (589)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 325 (589)
.+++.....++..+..|...|...| +.++|++.|++..+.| +++...+..+...|....
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~---------------- 227 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDAT---------------- 227 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGG----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCC----------------
Confidence 4444444444445555555555555 5566666666665554 233332233333332220
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHH-H--HhCCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 007808 326 YQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISG-L--AMHGRGAGALSLFHEMKNAGEMPDGITFIGI 402 (589)
Q Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 402 (589)
...++.++|.+.|++....++..+..+... + ...+++++|+.+|++..+.| +...+..|
T Consensus 228 ---------------~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~L 289 (452)
T 3e4b_A 228 ---------------LGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLL 289 (452)
T ss_dssp ---------------GSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ---------------CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 001455555555555542244455555555 3 34678888888888888766 55666667
Q ss_pred HHHHhccC-----cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 007808 403 LCACTHMG-----LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEAVDFVKRMPIEADAVIWANLLGS 473 (589)
Q Consensus 403 ~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 473 (589)
...|. .| ++++|.++|++.. .-++..+..|...|.. ..++++|.+.|++.....+......+...
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 76666 45 8899999988775 3456677777777766 34889999999887323334445556655
Q ss_pred Hhc----CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh--cCChHHHHHHHHHhh
Q 007808 474 CRV----YKNVELAELALERLTELEPKNPANFVMLSNIYGD--LGRWKDVARIKVAMR 525 (589)
Q Consensus 474 ~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 525 (589)
|.. ..+.++|...|+++.+..+. .+...+..+... .++.++|.++.++-.
T Consensus 364 y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 543 46899999999999887754 344444444333 345667777766554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-15 Score=149.87 Aligned_cols=298 Identities=12% Similarity=0.027 Sum_probs=206.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CChhHH
Q 007808 261 SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPN--DATIVTVLSACARLGALDFSKWVHVYAEYN----GYQ-GNVCVG 333 (589)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 333 (589)
.+......+...|++++|+..|+++.+.++..|. ...+..+...+...|+++.|...+.++... +.+ ....++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3445556666777777777777777665411111 234556666666777777777766665432 111 124456
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhCCC--------------------hHHHHHHH
Q 007808 334 NALIDMYAKCGIIENAVDVFNSMDT-----KD----LITWNTIISGLAMHGR--------------------GAGALSLF 384 (589)
Q Consensus 334 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~ 384 (589)
..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6667777777777777777765542 11 2367777788888888 88888888
Q ss_pred HHHHHC----CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHH
Q 007808 385 HEMKNA----GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFV 455 (589)
Q Consensus 385 ~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 455 (589)
++.... +..| ...++..+...+...|++++|...++++.....-.++ ...+..+...|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876542 1112 2346778888899999999999999888653222233 347788899999999999999999
Q ss_pred hhCC----CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHH
Q 007808 456 KRMP----IEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIK 521 (589)
Q Consensus 456 ~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 521 (589)
++.. ..++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8761 1122 4567778889999999999999999999875443 458889999999999999999999
Q ss_pred HHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCc
Q 007808 522 VAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPL 576 (589)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 576 (589)
++..+..- .....|....++..++.+|..+|+...+.
T Consensus 331 ~~al~~~~------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 331 EKHLEISR------------------EVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHH------------------HTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHH------------------HhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 98852110 00234567888999999999999885543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=133.34 Aligned_cols=207 Identities=7% Similarity=-0.054 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC 406 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 406 (589)
...+..+...+...|++++|.+.|+++. ..+...+..+...|...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4456666677777777777777777654 2355677888888888999999999999888753 33667788888889
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 483 (589)
...|++++|.++++++.. .+..| +...+..++..|...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998865 22445 4667788889999999999999999887 2333 577788888999999999999
Q ss_pred HHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHH
Q 007808 484 ELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAE 562 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 562 (589)
...++++++..|+++..+..++.++...|++++|.++++++. ++.|+++.....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------------------------~~~p~~~~~~~~l 249 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK------------------------RLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTSHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH------------------------HHCCCCHHHHHHH
Confidence 999999999999989999999999999999999999999986 6778877766544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=141.43 Aligned_cols=242 Identities=10% Similarity=-0.059 Sum_probs=193.3
Q ss_pred HhcCChhHHHHHHHHHHHcCC---CCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHH
Q 007808 306 ARLGALDFSKWVHVYAEYNGY---QGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAG 379 (589)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 379 (589)
...|++++|...++.+.+... +.+..++..++..+...|++++|...|+++. +.+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345788999999999988632 2246778889999999999999999999876 3467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-
Q 007808 380 ALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM- 458 (589)
Q Consensus 380 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 458 (589)
|+..|+++.+.. +.+...+..+...+...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999852 336778889999999999999999999999754 355444455555667789999999999776
Q ss_pred C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC----CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCC
Q 007808 459 P-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPK----NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLP 533 (589)
Q Consensus 459 ~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 533 (589)
. .+++...+ .++..+...++.++|...++++++..|. ++..+..++.+|.+.|++++|...++++.
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------- 242 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV-------- 242 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH--------
Confidence 2 23343333 4667778888999999999999987764 36789999999999999999999999986
Q ss_pred ccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchH
Q 007808 534 GCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
+.+|++...+ +.++..+|+.++|++.+
T Consensus 243 ----------------~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 243 ----------------ANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp ----------------TTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred ----------------hCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 6778775544 66777888888877654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-14 Score=133.11 Aligned_cols=198 Identities=8% Similarity=-0.007 Sum_probs=174.2
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence 4567888899999999999999999999853 346778888999999999999999999999764 2346778889999
Q ss_pred HHHhcCCHHHHHHHHhhC-C--CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 441 LLARAGRLAEAVDFVKRM-P--IEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~-~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
.|...|++++|++.++++ . ..| +...+..+...+...|++++|...++++++..|.++..+..++.++...|++++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999987 3 455 456677788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhc
Q 007808 517 VARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFST 585 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 585 (589)
|...++++. +..|+++..+..++.+|...|+.++|++++..+...
T Consensus 194 A~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFA------------------------QGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHH------------------------TTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------------HhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999986 678999999999999999999999898887766543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-16 Score=164.81 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=120.7
Q ss_pred cchHHHHHHHHccCChhHHHHHhhcCC-------CCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHH
Q 007808 35 YITPRIITACAQLKQMTYARKMFDKIT-------DQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVL 107 (589)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 107 (589)
.+||++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 579999999999999999999997653 4899999999999999999999999999999999999999999999
Q ss_pred HHHhccCCh-HHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC-----CCeehHHHHHHHHHhCC
Q 007808 108 KSCVKINAL-REGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE-----RNVVVWTSMINGYISCG 180 (589)
Q Consensus 108 ~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~g 180 (589)
.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++...++...+.. +...+...|.+.|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 78999999999999999999999999877665444444444333322 11334444555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=125.24 Aligned_cols=162 Identities=14% Similarity=0.109 Sum_probs=140.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCM 438 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 438 (589)
+...|..+...|...|++++|++.|++..+. .| +...+..+..++...|++++|...++.+... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567888899999999999999999999884 45 5678888999999999999999999988653 23446677788
Q ss_pred HHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 439 VDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
...+...++++.|.+.+++. ...| +...+..+...+.+.|++++|++.|+++++++|+++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999887 3334 577788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh
Q 007808 517 VARIKVAMR 525 (589)
Q Consensus 517 A~~~~~~~~ 525 (589)
|++.+++..
T Consensus 160 A~~~~~~al 168 (184)
T 3vtx_A 160 AVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999985
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=6.9e-15 Score=134.11 Aligned_cols=197 Identities=12% Similarity=0.071 Sum_probs=157.4
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 45677788888999999999999999999852 446778888999999999999999999999764 234678888999
Q ss_pred HHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 517 (589)
..|...|++++|++.++++ . .+.+...+..+...+...|++++|...++++++..|+++..+..++.++.+.|++++|
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999987 2 2346778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 518 ARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
+..++++. +.+|+++.++..++.+|...|+.++|+.++....
T Consensus 179 ~~~~~~~~------------------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 179 LSQFAAVT------------------------EQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHH------------------------HhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999986 6789999999999999999999999988877654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-14 Score=136.79 Aligned_cols=247 Identities=9% Similarity=-0.017 Sum_probs=172.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 007808 227 DVISWNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYANNGL-FFEVLDAFKRMLTEGRVFPNDATIVTVL 302 (589)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~~l~ 302 (589)
+...|..+...+.+.|++++|+..|+++.+ | +..+|+.+..++...|+ +++|+..|++++... +-+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 346788888999999999999999999875 3 56789999999999997 999999999999975 33566777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHH
Q 007808 303 SACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 382 (589)
.++...|++++|...++++++.. +.+...| ..+..++...|++++|+.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~-------------------------------~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAW-------------------------------QHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHH-------------------------------HHHHHHHHHHTCCTTHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHH-------------------------------HHHHHHHHHcCChHHHHH
Confidence 77777777777777777777654 3344444 444455555566666666
Q ss_pred HHHHHHHCCCCC-CHhHHHHHHHHHhc-cCcHHHH-----HHHHHHhHHhcCCCCChHHHHHHHHHHHhcC--CHHHHHH
Q 007808 383 LFHEMKNAGEMP-DGITFIGILCACTH-MGLVEEG-----LSYFQSMAMDYSIVPQIEHYGCMVDLLARAG--RLAEAVD 453 (589)
Q Consensus 383 ~~~~m~~~~~~p-~~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~ 453 (589)
.++++++. .| +...|+.+..++.. .|..++| +..+++++.. .+-+...|..+..+|.+.| ++++|++
T Consensus 222 ~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 222 YVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHH
Confidence 66666653 33 44556666666655 4443444 4666666542 1223556677777777766 5777777
Q ss_pred HHhhCCCCC-CHHHHHHHHHHHhcCC--------C-HHHHHHHHHHH-HccCCCCCcchHHHHHHHhhc
Q 007808 454 FVKRMPIEA-DAVIWANLLGSCRVYK--------N-VELAELALERL-TELEPKNPANFVMLSNIYGDL 511 (589)
Q Consensus 454 ~~~~~~~~p-~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 511 (589)
.++++...| +...+..+..+|.+.| + .++|+++|+++ ++++|.....|..++..+...
T Consensus 298 ~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 298 QLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 777664344 4556666667776653 2 58899999999 899998888888887776543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-14 Score=127.93 Aligned_cols=197 Identities=12% Similarity=-0.004 Sum_probs=172.9
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
++..|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|.+.++++... .+.+...+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 45678888999999999999999999999853 345778888999999999999999999999764 234677888999
Q ss_pred HHHHhc-CCHHHHHHHHhhC-C--CCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh
Q 007808 440 DLLARA-GRLAEAVDFVKRM-P--IEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRW 514 (589)
Q Consensus 440 ~~~~~~-g~~~~A~~~~~~~-~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 514 (589)
..|... |++++|++.++++ . ..|+ ...+..+..++...|++++|+..++++++..|.++..+..++.++.+.|++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 999999 9999999999987 3 3443 567788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC-CchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 515 KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL-DRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 515 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
++|.+.++++. +.+| +++..+..++.++...|+.+++..+...+.
T Consensus 164 ~~A~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 164 GDADYYFKKYQ------------------------SRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHH------------------------HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------------HhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999986 6789 999999999999999999988888777664
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=9.2e-16 Score=158.06 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=99.4
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCC-------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHH
Q 007808 327 QGNVCVGNALIDMYAKCGIIENAVDVFNSMD-------TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITF 399 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 399 (589)
.....+|++||++|++.|++++|.++|.+|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678888888888888888888886543 578888888999999999999999999999999999999999
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 400 IGILCACTHMGL-VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 400 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
+++|.++++.|+ .++|.++|++|..+ |+.||..+|++++....+.+-++.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHH
Confidence 999999988887 47888999999654 899999999888776665533333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-13 Score=125.48 Aligned_cols=185 Identities=11% Similarity=-0.060 Sum_probs=121.9
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 007808 332 VGNALIDMYAK----CGIIENAVDVFNSMDT-KDLITWNTIISGLAM----HGRGAGALSLFHEMKNAGEMPDGITFIGI 402 (589)
Q Consensus 332 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 402 (589)
.+..+...|.. .+++++|...|++..+ .++..+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 116 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASL 116 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHH
Confidence 33334444444 4444444444444332 134455555566666 677777777777777653 55666667
Q ss_pred HHHHhc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 007808 403 LCACTH----MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEAVDFVKRMPIEADAVIWANLLGSC 474 (589)
Q Consensus 403 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 474 (589)
...|.. .+++++|...|++..+. + +...+..+...|.. .+++++|++.+++.....+...+..+...|
T Consensus 117 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 192 (273)
T 1ouv_A 117 GGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMY 192 (273)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777776 77777777777777542 2 45566667777776 777788877777762223456666677777
Q ss_pred hc----CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh----cCChHHHHHHHHHhh
Q 007808 475 RV----YKNVELAELALERLTELEPKNPANFVMLSNIYGD----LGRWKDVARIKVAMR 525 (589)
Q Consensus 475 ~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 525 (589)
.. .+++++|.+.++++++.+| +..+..++.+|.. .|++++|++.+++..
T Consensus 193 ~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 193 HHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp HHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred HcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 77 7888888888888887766 5677888888888 888888888888775
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-15 Score=148.81 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=129.8
Q ss_pred CcchHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHH
Q 007808 360 DLITWNTIISGLAMHGRG-AGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGC 437 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 437 (589)
+...+..+...+...|++ ++|++.|++..+. .| +...+..+..+|...|++++|.+.|+++. ...|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL---THCKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCHHHHHH
Confidence 445666666667777777 7777777776663 33 45566667777777777777777777765 33466666666
Q ss_pred HHHHHHhc---------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHccCC---
Q 007808 438 MVDLLARA---------GRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVY--------KNVELAELALERLTELEP--- 495 (589)
Q Consensus 438 l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p--- 495 (589)
+..+|... |++++|++.++++ ...| +...|..+..+|... |++++|+..|+++++++|
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 77777777 7777777777766 2333 456666666666666 777777777777777777
Q ss_pred CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCC
Q 007808 496 KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHP 575 (589)
Q Consensus 496 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 575 (589)
+++.++..++.+|...|++++|++.+++.. +++|+++.++..++.++..+|+.++|
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAA------------------------ALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777777764 56777777777777777777766665
Q ss_pred cc
Q 007808 576 LT 577 (589)
Q Consensus 576 ~~ 577 (589)
+.
T Consensus 312 i~ 313 (474)
T 4abn_A 312 LE 313 (474)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.2e-13 Score=122.37 Aligned_cols=225 Identities=10% Similarity=-0.068 Sum_probs=182.3
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhHH
Q 007808 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR----LGALDFSKWVHVYAEYNGYQGNVCVG 333 (589)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 333 (589)
+..++..+...+...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 45566777778888888888888888887744 34566677777777 888888888888888775 66777
Q ss_pred HHHHHHHHh----cCChHHHHHHHhhCCC-CCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 007808 334 NALIDMYAK----CGIIENAVDVFNSMDT-KDLITWNTIISGLAM----HGRGAGALSLFHEMKNAGEMPDGITFIGILC 404 (589)
Q Consensus 334 ~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 404 (589)
..+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 788888888 8888888888887664 366778888888888 999999999999999865 5566777888
Q ss_pred HHhc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhc
Q 007808 405 ACTH----MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEAVDFVKRMPIEADAVIWANLLGSCRV 476 (589)
Q Consensus 405 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 476 (589)
.|.. .+++++|...|++..+. .+...+..+...|.. .+++++|++.+++.....+...+..+...|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 8887 89999999999998753 356778889999999 99999999999987312236777778888888
Q ss_pred ----CCCHHHHHHHHHHHHccCCC
Q 007808 477 ----YKNVELAELALERLTELEPK 496 (589)
Q Consensus 477 ----~g~~~~A~~~~~~~~~~~p~ 496 (589)
.+++++|.+.|+++++++|+
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999886
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=142.19 Aligned_cols=260 Identities=12% Similarity=0.014 Sum_probs=171.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCChhHHH
Q 007808 264 GLIGGYANNGLFFEVLDAFKRMLTEGRVFPND----ATIVTVLSACARLGALDFSKWVHVYAEYN----G-YQGNVCVGN 334 (589)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~ 334 (589)
.+...+...|++++|+..|+++++.+ +.+. ..+..+...+...|+++.|...++++.+. + .+.....+.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34455566666666666666666543 1111 24555555566666666666666555432 1 112334555
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC---------CcchHHHHHHHHHhCCC-----------------hHHHHHHHHHHH
Q 007808 335 ALIDMYAKCGIIENAVDVFNSMDTK---------DLITWNTIISGLAMHGR-----------------GAGALSLFHEMK 388 (589)
Q Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~ 388 (589)
.+...|...|++++|...|++..+. ...++..+...|...|+ +++|+..+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6666666666666666666654311 22356667777777777 777877777765
Q ss_pred HC----CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 389 NA----GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 389 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
+. +-.| ...++..+...+...|++++|...+++......-.++ ...+..+..+|...|++++|++.++++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 41 1112 2346777788888889999999888887653211122 2367788888999999999998888761
Q ss_pred -C---CCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 460 -I---EAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 460 -~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
. ..+ ...+..+...+...|++++|...+++++++.+.. ..++..++.+|.+.|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 111 4566777788899999999999999998865432 3488889999999999999999998885
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-14 Score=125.89 Aligned_cols=182 Identities=12% Similarity=0.046 Sum_probs=102.5
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL 441 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (589)
..+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+. .+.+...|..+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 3444445555555555555555555555322134444444555555555555555555555431 11123445555555
Q ss_pred HHhcCCHHHHHHHHhhC-CCCC-CH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC--CCcchHHHHHHHhh
Q 007808 442 LARAGRLAEAVDFVKRM-PIEA-DA-------VIWANLLGSCRVYKNVELAELALERLTELEPK--NPANFVMLSNIYGD 510 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~ 510 (589)
|...|++++|++.+++. ...| +. ..|..+...+...|++++|++.|+++++++|+ ++.++..++.+|..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 55555555555555554 2222 22 23444445555555555555555555555555 55555555555555
Q ss_pred cCCh---------------------------HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHH
Q 007808 511 LGRW---------------------------KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEA 563 (589)
Q Consensus 511 ~g~~---------------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~ 563 (589)
.|+. ++|+..+++.. +++|+++.+...|+
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~------------------------~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAV------------------------TLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------hcCCCCHHHHHHHH
Confidence 5554 88888888875 89999999999999
Q ss_pred HHHHHc
Q 007808 564 NMIKLL 569 (589)
Q Consensus 564 ~~~~~~ 569 (589)
.+...+
T Consensus 222 ~i~~~~ 227 (228)
T 4i17_A 222 QVKAMI 227 (228)
T ss_dssp HHHTTC
T ss_pred HHHHhh
Confidence 987543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-14 Score=122.35 Aligned_cols=161 Identities=11% Similarity=0.066 Sum_probs=144.3
Q ss_pred CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 007808 395 DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLG 472 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 472 (589)
+...|..+...|...|++++|++.|+++++.. +-+...+..++.+|.+.|++++|+..++++ ...| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 56778999999999999999999999998642 345778999999999999999999999988 2333 5677777778
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccC
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRE 552 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (589)
.+...++++.|...++++.++.|.++.++..++.+|.+.|++++|++.+++.. +++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l------------------------~~~ 137 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI------------------------SIK 137 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH------------------------Hhc
Confidence 89999999999999999999999999999999999999999999999999986 789
Q ss_pred CCchHHHHHHHHHHHHcccCCCCcchHhh
Q 007808 553 LDRKSIVRAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 553 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
|+++.++..+|.+|..+|+.++|+.....
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-14 Score=134.95 Aligned_cols=264 Identities=14% Similarity=0.048 Sum_probs=182.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CChhHHHH
Q 007808 263 NGLIGGYANNGLFFEVLDAFKRMLTEGRVFPN--DATIVTVLSACARLGALDFSKWVHVYAEYN----GYQ-GNVCVGNA 335 (589)
Q Consensus 263 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 335 (589)
......+...|++++|+..|+++.+..+-.|. ...+..+...+...|+++.|...+..+.+. +.+ ....++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 33455566677777777777777665411111 245556666667777777777766665432 111 12445666
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhCCC--------------------hHHHHHHHHH
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDT-----KD----LITWNTIISGLAMHGR--------------------GAGALSLFHE 386 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 386 (589)
+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|+..+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 77777777777777777766542 11 2366777777888888 8888888877
Q ss_pred HHHC----CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhh
Q 007808 387 MKNA----GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKR 457 (589)
Q Consensus 387 m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 457 (589)
.... +..| ....+..+...+...|++++|...++++.......++ ...+..++..|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6541 1112 2346777888889999999999999887643211122 33677888999999999999999987
Q ss_pred CC----CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHH
Q 007808 458 MP----IEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 458 ~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
.. ..++ ...+..+...+...|++++|...+++++++.|.. ..++..++.+|.+.|++++|.+.+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 61 1122 4566777788999999999999999999865543 33788999999999999999999999
Q ss_pred hhh
Q 007808 524 MRD 526 (589)
Q Consensus 524 ~~~ 526 (589)
..+
T Consensus 329 a~~ 331 (338)
T 3ro2_A 329 HLE 331 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.7e-14 Score=141.73 Aligned_cols=194 Identities=9% Similarity=-0.018 Sum_probs=164.0
Q ss_pred CCChhHHHHHHHHHHhcCCh-HHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHH
Q 007808 327 QGNVCVGNALIDMYAKCGII-ENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGI 402 (589)
Q Consensus 327 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 402 (589)
+.+...+..+...|...|++ ++|++.|++.. ..+...|..+..+|...|++++|+..|++..+. .|+...+..+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l 176 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNL 176 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHH
Confidence 34566666777777777777 77777777654 235668888889999999999999999999984 6777888889
Q ss_pred HHHHhcc---------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc--------CCHHHHHHHHhhC-CCCC--
Q 007808 403 LCACTHM---------GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA--------GRLAEAVDFVKRM-PIEA-- 462 (589)
Q Consensus 403 ~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p-- 462 (589)
...+... |++++|.+.++++.+. .+.+...|..+..+|... |++++|++.|+++ ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 9999999 9999999999999763 234578889999999998 9999999999988 3455
Q ss_pred --CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 463 --DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 463 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
+...|..+..+|...|++++|.+.|+++++++|+++.++..++.++...|++++|++.+.++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 78889999999999999999999999999999999999999999999999999999866554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=139.09 Aligned_cols=273 Identities=11% Similarity=0.048 Sum_probs=211.7
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCC-----C--
Q 007808 291 VFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN----VCVGNALIDMYAKCGIIENAVDVFNSMDT-----K-- 359 (589)
Q Consensus 291 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-- 359 (589)
..+....+......+...|++++|...++.+.+.+ +.+ ..++..+...|...|++++|...+++... .
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc
Confidence 34556667778888999999999999999999875 333 35788899999999999999999887641 1
Q ss_pred --CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhccCc--------------------H
Q 007808 360 --DLITWNTIISGLAMHGRGAGALSLFHEMKNAGE-MPD----GITFIGILCACTHMGL--------------------V 412 (589)
Q Consensus 360 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~ 412 (589)
...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 245788889999999999999999998876210 112 3467888889999999 9
Q ss_pred HHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHhcCCCH
Q 007808 413 EEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP----IEAD----AVIWANLLGSCRVYKNV 480 (589)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~ 480 (589)
++|...+++......-.++ ...+..+...|...|++++|++.++++. ..++ ...+..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 9999999877542111122 4567888999999999999999998871 1223 23677788899999999
Q ss_pred HHHHHHHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC
Q 007808 481 ELAELALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD 554 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 554 (589)
++|...+++++++.|.. ..++..++.+|...|++++|++.+++..+..-. ....|.
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------------------~~~~~~ 305 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE------------------LNDRIG 305 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------TTCHHH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh------------------cCCcHH
Confidence 99999999999876654 568889999999999999999999988521100 011344
Q ss_pred chHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 555 RKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 555 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
.+.++..+|.+|..+|+..+|+.+....
T Consensus 306 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 306 EGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4778999999999999998888876653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=144.39 Aligned_cols=273 Identities=13% Similarity=0.047 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhCCC---------CCc
Q 007808 295 DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNV----CVGNALIDMYAKCGIIENAVDVFNSMDT---------KDL 361 (589)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~ 361 (589)
...+..+...+...|++++|...++.+.+.+ +.+. .++..+...|...|++++|...|++..+ ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445566778899999999999999999875 3333 4788899999999999999999887652 134
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHhccCc-----------------HHHHHHHH
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNA----GEMP-DGITFIGILCACTHMGL-----------------VEEGLSYF 419 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 419 (589)
..+..+...|...|++++|+..+++..+. +-.| ...++..+...|...|+ +++|.+.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 57888999999999999999999987763 1122 23467888889999999 99999998
Q ss_pred HHhHHhc---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC-C---CCC----HHHHHHHHHHHhcCCCHHHHHHHH
Q 007808 420 QSMAMDY---SIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP-I---EAD----AVIWANLLGSCRVYKNVELAELAL 487 (589)
Q Consensus 420 ~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 487 (589)
++...-. +..+ ....+..+...|...|++++|++.+++.. . .++ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 8875421 1112 23577888999999999999999998872 1 122 236777888999999999999999
Q ss_pred HHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHH
Q 007808 488 ERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRA 561 (589)
Q Consensus 488 ~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 561 (589)
++++++.|.. ..++..++.+|...|++++|.+++++..+..-. ....+....++..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------~~~~~~~~~~~~~ 348 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE------------------LGDRIGEARACWS 348 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------------------CCChHHHHHHHHH
Confidence 9999977643 568889999999999999999999988521100 0123445678999
Q ss_pred HHHHHHHcccCCCCcchHhhhhhcc
Q 007808 562 EANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
++.+|..+|+..+|+.+.......+
T Consensus 349 la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 349 LGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999988877655444
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-12 Score=120.80 Aligned_cols=218 Identities=11% Similarity=-0.003 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007808 276 FEVLDAFKRMLTEGRVFPNDATIVTVLSACAR-------LGAL-------DFSKWVHVYAEYNGYQGNVCVGNALIDMYA 341 (589)
Q Consensus 276 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (589)
++|+..|++++... +.+...|...+..+.. .|++ ++|..+++++++.-.+.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56666777766643 2344455555444432 3554 555555555555211334445555555555
Q ss_pred hcCChHHHHHHHhhCCC--C-Ccc-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-hccCcHHHHH
Q 007808 342 KCGIIENAVDVFNSMDT--K-DLI-TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC-THMGLVEEGL 416 (589)
Q Consensus 342 ~~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~ 416 (589)
+.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|...+... ...|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555432 2 122 45555555555555555555555555432 12222232222221 1245555555
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 007808 417 SYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP----IEA--DAVIWANLLGSCRVYKNVELAELALERL 490 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 490 (589)
.+|++.++.. +.+...|..++..+.+.|++++|..+|+++. .+| ....|..++....+.|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554422 1234445555555555555555555555541 132 2344444455555555555555555555
Q ss_pred HccCCCCC
Q 007808 491 TELEPKNP 498 (589)
Q Consensus 491 ~~~~p~~~ 498 (589)
++..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 55555433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9e-14 Score=145.12 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 007808 397 ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGS 473 (589)
Q Consensus 397 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 473 (589)
.+++.|...+.+.|++++|++.|+++++. .|+ ...|..+..+|.+.|++++|++.|+++ .+.| +...|..+..+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44555555555555555555555555432 232 445555555555555555555555554 2333 34455555555
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC
Q 007808 474 CRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL 553 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 553 (589)
+.+.|++++|++.|+++++++|+++.+|..++.+|.+.|++++|++.+++.. +++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al------------------------~l~P 142 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL------------------------KLKP 142 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCS
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCC
Confidence 5566666666666666666666655666666666666666666666655553 4556
Q ss_pred CchHHHHHHHHHHHHcccCCCCcchHh
Q 007808 554 DRKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
+++.++..|+.+|..+|+.++|+....
T Consensus 143 ~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred CChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 666666666666666666655554443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=135.36 Aligned_cols=273 Identities=11% Similarity=0.039 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCC---------CCcc
Q 007808 296 ATIVTVLSACARLGALDFSKWVHVYAEYNGYQGN----VCVGNALIDMYAKCGIIENAVDVFNSMDT---------KDLI 362 (589)
Q Consensus 296 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~ 362 (589)
..+......+...|++++|...++++.+.. +.+ ...+..+...|...|++++|.+.+++... ....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 345556677889999999999999999875 333 36778899999999999999999987642 1245
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhccCc--------------------HHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGE-MPD----GITFIGILCACTHMGL--------------------VEEGLS 417 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 417 (589)
.+..+...+...|++++|+..+++..+... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 788889999999999999999999765211 112 3367788889999999 999999
Q ss_pred HHHHhHHhc---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHhcCCCHHHHHH
Q 007808 418 YFQSMAMDY---SIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP----IEAD----AVIWANLLGSCRVYKNVELAEL 485 (589)
Q Consensus 418 ~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~ 485 (589)
.+++..... +..+ ....+..+...|...|++++|.+.++++. ..++ ...+..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 988765421 1111 14567888999999999999999998872 1122 2367777788999999999999
Q ss_pred HHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHH
Q 007808 486 ALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIV 559 (589)
Q Consensus 486 ~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 559 (589)
.+++++++.|.. ..++..++.+|...|++++|...++++.+..-. ....+....++
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------------------~~~~~~~~~~~ 306 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE------------------LKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh------------------cCCcHHHHHHH
Confidence 999999876554 568889999999999999999999988521100 01123446688
Q ss_pred HHHHHHHHHcccCCCCcchHhhhhhccc
Q 007808 560 RAEANMIKLLPQNNHPLTFIVVIFSTFA 587 (589)
Q Consensus 560 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (589)
..++.+|...|+.++|+.+.......+.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 8999999999999999988877665544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-13 Score=131.32 Aligned_cols=223 Identities=8% Similarity=-0.084 Sum_probs=148.3
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----C----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CC-----CHhHHH
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDT-----K----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGE-MP-----DGITFI 400 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p-----~~~~~~ 400 (589)
....+...|++++|...|++..+ + ...++..+...|...|++++|+..+++..+.-. .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45556677777777777776542 1 224667777777788888888887777665210 11 124566
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC------CC-C-CHHHHH
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP------IE-A-DAVIWA 468 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-p-~~~~~~ 468 (589)
.+...|...|++++|...++++..-..-.++ ..++..++.+|...|++++|++.+++.. .. | ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777788888888888887776542211122 2366777788888888888887777651 12 3 245566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccC-----CCCCcchHHHHHHHhhcCC---hHHHHHHHHHhhhCCCccCCccceeee
Q 007808 469 NLLGSCRVYKNVELAELALERLTELE-----PKNPANFVMLSNIYGDLGR---WKDVARIKVAMRDTGFKKLPGCSSIEV 540 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 540 (589)
.+...+...|++++|...+++++++. |.....+..++.+|...|+ +++|+.++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---------------- 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---------------- 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----------------
Confidence 67777888888888888888887753 3323335667778888887 77777777665
Q ss_pred CCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 541 NEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
...|+...++..||.+|...|+.++|+.+.....
T Consensus 333 ---------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 333 ---------MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2456667777888888888888877777665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-10 Score=117.90 Aligned_cols=421 Identities=9% Similarity=0.049 Sum_probs=257.6
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC---hHHHHHHHHHHHHhCC-CCchHHH
Q 007808 63 QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINA---LREGEELHCLVLKNGF-RANIFVG 138 (589)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 138 (589)
.|..+|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ .+.+.++|++.+...+ +|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 36667888888887778888888888888765 24455567666776667777 8888888888776541 3666677
Q ss_pred hHHHHHHHcCCCh--------HHHHHHHccCC------CC-CeehHHHHHHHHHh---------CCCHHHHHHHHHhCCC
Q 007808 139 TALIELYSTGKAI--------EAAYKVFGEMD------ER-NVVVWTSMINGYIS---------CGDIVSARCLFELAPE 194 (589)
Q Consensus 139 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~ 194 (589)
..-+....+.++. +...++|+... ++ ....|...+..... +++++.+..+|+.+..
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 6666554444432 22335555422 11 22355555544332 2345556666665553
Q ss_pred C---Ch-hHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhh-------CCC-------
Q 007808 195 R---DV-ILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEE-------MPE------- 256 (589)
Q Consensus 195 ~---~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~------- 256 (589)
. +. .+|......-...+ ...+.+++.+ ...+++.|...+.+ +..
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVN-QLTARRHIGE-----------------LSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred CccHHHHHHHHHHHHHHHhcC-cchHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 2 11 12211111000000 0001111110 01122223333322 111
Q ss_pred -------C--C------chhHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHH
Q 007808 257 -------R--N------VFSWNGLIGGYANNG-------LFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFS 314 (589)
Q Consensus 257 -------~--~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 314 (589)
| + ...|...+.---..+ ..+.+..+|++++... +-+...|...+.-+...|+.+.|
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHH
Confidence 0 0 123444444322222 1234567788888763 45677777777778888998889
Q ss_pred H-HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------------CC------------cchHHHHH
Q 007808 315 K-WVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT-------------KD------------LITWNTII 368 (589)
Q Consensus 315 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~l~ 368 (589)
. .+++++... .|.+...+...+....+.|+++.|.++|+++.. |+ ..+|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 999999875 466777788888888899999999999987753 21 23577778
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC
Q 007808 369 SGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHM-GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGR 447 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 447 (589)
....+.|+.+.|..+|.+..+.-..+....|...+..-.+. ++.+.|.++|+..++.+ +.+...|...++.....|+
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCC
Confidence 87788899999999999998751112233443333332333 55899999999998764 3456667788888888999
Q ss_pred HHHHHHHHhhC-CCCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 448 LAEAVDFVKRM-PIEA----DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 448 ~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
.+.|..+|+++ ...| ....|...+..-.+.|+.+.+..+.+++.+..|+++ ....+++-|
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 99999999987 3233 235677777777889999999999999999999854 333333333
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.4e-13 Score=128.97 Aligned_cols=220 Identities=11% Similarity=-0.009 Sum_probs=128.4
Q ss_pred HHhcCChhHHHHHHHHHHHc----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCCC-----C-----CcchHHHHHH
Q 007808 305 CARLGALDFSKWVHVYAEYN----GYQG-NVCVGNALIDMYAKCGIIENAVDVFNSMDT-----K-----DLITWNTIIS 369 (589)
Q Consensus 305 ~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~~ 369 (589)
+...|+++.|...+.++.+. +.++ ...++..+...|...|++++|...+++..+ + ...+++.+..
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 44445555555555444432 1011 123444555555555555555555544331 1 1235666667
Q ss_pred HHHhCCChHHHHHHHHHHHHCCC-CCC----HhHHHHHHHHHhccCcHHHHHHHHHHhHHh---cCC-CCChHHHHHHHH
Q 007808 370 GLAMHGRGAGALSLFHEMKNAGE-MPD----GITFIGILCACTHMGLVEEGLSYFQSMAMD---YSI-VPQIEHYGCMVD 440 (589)
Q Consensus 370 ~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~~~l~~ 440 (589)
.|...|++++|+..+++..+... .++ ..++..+...|...|++++|...+++...- .+. +....++..+..
T Consensus 193 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 193 NFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 77777777777777777654210 011 135666777777778888888777776541 122 222456677777
Q ss_pred HHHhcCCHHHHHHHHhhCC------CCCC-HHHHHHHHHHHhcCCC---HHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 441 LLARAGRLAEAVDFVKRMP------IEAD-AVIWANLLGSCRVYKN---VELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~~------~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
+|.+.|++++|.+.+++.. ..|. ...+..+...+...|+ +++|...+++. ...|.....+..++.+|..
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH
Confidence 7888888888877777651 1221 1224555566777777 66777777666 2333345577778888888
Q ss_pred cCChHHHHHHHHHhh
Q 007808 511 LGRWKDVARIKVAMR 525 (589)
Q Consensus 511 ~g~~~~A~~~~~~~~ 525 (589)
.|++++|.+.+++..
T Consensus 352 ~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 352 RKNFQKASAYFLKVE 366 (383)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 888888888887774
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-14 Score=116.13 Aligned_cols=144 Identities=11% Similarity=0.004 Sum_probs=120.7
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCC
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYK 478 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 478 (589)
|...+...|++++|+..++.... ..|+ ...+-.+...|.+.|++++|++.|+++ .+.| +...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 45566778899999999888753 3343 345567889999999999999999988 4455 6788899999999999
Q ss_pred CHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHH-HHHhhhCCCccCCccceeeeCCeeeeeccccCCCchH
Q 007808 479 NVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARI-KVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKS 557 (589)
Q Consensus 479 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 557 (589)
++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. ++++. +++|+++.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al------------------------~l~P~~~~ 135 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA------------------------KLFPGSPA 135 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH------------------------HHSTTCHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------------------HhCcCCHH
Confidence 999999999999999999999999999999999999887765 57765 79999999
Q ss_pred HHHHHHHHHHHcccC
Q 007808 558 IVRAEANMIKLLPQN 572 (589)
Q Consensus 558 ~~~~l~~~~~~~~~~ 572 (589)
++...+.++...|+.
T Consensus 136 ~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 136 VYKLKEQLLDCEGED 150 (150)
T ss_dssp HHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhCcC
Confidence 999999999888863
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.9e-13 Score=138.47 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=142.3
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGC 437 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ 437 (589)
+..+|+.|...|.+.|++++|++.|++.++. .| +...+..+..+|.+.|++++|++.|+++++. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 3457888889999999999999999999884 56 4678889999999999999999999998753 354 778999
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK 515 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 515 (589)
+..+|.+.|++++|++.|+++ .+.| +...+..+..+|...|++++|++.|+++++++|+++.++..++.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999987 4455 57789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh
Q 007808 516 DVARIKVAMR 525 (589)
Q Consensus 516 ~A~~~~~~~~ 525 (589)
+|.+.++++.
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-11 Score=117.11 Aligned_cols=245 Identities=7% Similarity=-0.015 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHhhCCC---C-CcchHHHHHHHHHh
Q 007808 312 DFSKWVHVYAEYNGYQGNVCVGNALIDMYA-------KCGII-------ENAVDVFNSMDT---K-DLITWNTIISGLAM 373 (589)
Q Consensus 312 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 373 (589)
+.|...|++++... +.+...|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888888764 667888888888776 35886 899999997754 3 45689999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH-h-HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH-hcCCHHH
Q 007808 374 HGRGAGALSLFHEMKNAGEMPDG-I-TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLA-RAGRLAE 450 (589)
Q Consensus 374 ~~~~~~A~~~~~~m~~~~~~p~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 450 (589)
.|++++|..+|+++.+ +.|+. . .|..++..+.+.|++++|..+|+++++. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 46643 3 7888999999999999999999999752 2334555554443322 3799999
Q ss_pred HHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc---CCC-CCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 451 AVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTEL---EPK-NPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 451 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
|.++|+++ ...| +...|..++..+.+.|++++|..+|+++++. .|+ +...|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 2333 6788888899999999999999999999995 453 5668899999999999999999999998
Q ss_pred hhCCCccCCccceeeeCCeeee-eccccCCCchHHHHHHHH
Q 007808 525 RDTGFKKLPGCSSIEVNEVVML-GCLSRELDRKSIVRAEAN 564 (589)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~l~~ 564 (589)
.+.......... + ...... ..+.++|+++..+..||.
T Consensus 268 ~~~~p~~~~~~~-~--~~~~~r~~~l~~~P~~~~~ln~lgY 305 (308)
T 2ond_A 268 FTAFREEYEGKE-T--ALLVDRYKFMDLYPCSASELKALGY 305 (308)
T ss_dssp HHHTTTTTSSCH-H--HHHHTTTCBTTBCSSCHHHHHTTTC
T ss_pred HHHcccccccch-H--HHHHHHHHhcccCCCCHHHHHhcCC
Confidence 643321111100 0 000111 166899999999998875
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-13 Score=129.37 Aligned_cols=235 Identities=13% Similarity=0.088 Sum_probs=127.7
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTE-------GRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYN------G 325 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 325 (589)
..++..+...+...|++++|+.+++++.+. . .+.....+..+...+...|++++|...+.++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 355777778888888888888888887763 1 1233445666667777777777777777666543 1
Q ss_pred C-CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCC-CHh
Q 007808 326 Y-QGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNA------GEMP-DGI 397 (589)
Q Consensus 326 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~ 397 (589)
. +..... +..+...|...|++++|+..++++.+. +-.| ...
T Consensus 106 ~~~~~~~~-------------------------------~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAAT-------------------------------LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHH-------------------------------HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHH-------------------------------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1 112233 444444455555555555555554432 1112 223
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHhhCC----------CC
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDY-----SIVP-QIEHYGCMVDLLARAGRLAEAVDFVKRMP----------IE 461 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~ 461 (589)
.+..+...+...|++++|.++++++.... +..| ....+..+..+|...|++++|.+.++++. ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45555566666666666666666654320 0011 13445556666666666666666665541 01
Q ss_pred CC-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 462 AD-------AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 462 p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+. ...+......+...+.+.+|...++++....|..+.++..++.+|.+.|++++|.+++++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11 11122222334455566667777777777777777888888888888888888888888774
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=6.3e-12 Score=108.82 Aligned_cols=158 Identities=13% Similarity=0.064 Sum_probs=95.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh
Q 007808 365 NTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR 444 (589)
Q Consensus 365 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 444 (589)
..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++... .+.+...+..++..|..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 334444445555555555555544321 223444555555555556666666665555432 12234555556666666
Q ss_pred cCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHH
Q 007808 445 AGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKV 522 (589)
Q Consensus 445 ~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 522 (589)
.|++++|.+.++++ . .+.+...+..+...+...|++++|...++++++..|.++..+..++.++...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666655 1 223455666666777777777777777777777777777777777777777777777777777
Q ss_pred Hhh
Q 007808 523 AMR 525 (589)
Q Consensus 523 ~~~ 525 (589)
++.
T Consensus 169 ~~~ 171 (186)
T 3as5_A 169 KAN 171 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-11 Score=112.94 Aligned_cols=209 Identities=11% Similarity=0.008 Sum_probs=133.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-C---cchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-HhHHH
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMDT--K-D---LITWNTIISGLAMHGRGAGALSLFHEMKNAGE-MPD-GITFI 400 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~ 400 (589)
+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555566666666666666666666552 2 2 34555566666666666666666666665311 111 23344
Q ss_pred HHHHHHhc--------cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHH
Q 007808 401 GILCACTH--------MGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLL 471 (589)
Q Consensus 401 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 471 (589)
.+..++.. .|++++|...|++++... |+ ......+.......+.. ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55555555 666666666666665432 22 11111111111000000 01135567
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhc----------CChHHHHHHHHHhhhCCCccCCcccee
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDL----------GRWKDVARIKVAMRDTGFKKLPGCSSI 538 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 538 (589)
..|.+.|++++|+..|+++++..|+++ .++..++.+|... |++++|+..++++.
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~------------- 222 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL------------- 222 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH-------------
Confidence 889999999999999999999999854 4889999999977 89999999999986
Q ss_pred eeCCeeeeeccccCCCch---HHHHHHHHHHHHcccCCCCcchH
Q 007808 539 EVNEVVMLGCLSRELDRK---SIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 539 ~~~~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
+.+|+++ .+...++.++..+|+...++...
T Consensus 223 -----------~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 223 -----------QIFPDSPLLRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp -----------HHCTTCTHHHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred -----------HHCCCChHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 6778885 56677888998888887766543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-10 Score=112.11 Aligned_cols=260 Identities=15% Similarity=0.017 Sum_probs=163.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCcHH----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----hhHHHH
Q 007808 265 LIGGYANNGLFFEVLDAFKRMLTEGRVFPNDA----TIVTVLSACARLGALDFSKWVHVYAEYNGYQ-GN----VCVGNA 335 (589)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 335 (589)
....+...|++++|...+++..... ...+.. .+..+...+...|+++.|...+.+....... .+ ...+..
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444556677777777777766643 111211 3444555566677777777777665542110 11 123455
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC----------C-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHhHHH
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDT----------K-DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEM--P--DGITFI 400 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~ 400 (589)
+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 66677777777777777765531 1 1234556777788888888888888887763211 1 124566
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHH-----HHHHHHHhcCCHHHHHHHHhhCC-CCCC-----HHHHHH
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYG-----CMVDLLARAGRLAEAVDFVKRMP-IEAD-----AVIWAN 469 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ 469 (589)
.+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 677778888888888888887754321111111121 23344778888888888888872 2221 234556
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCCC------CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPKN------PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+...+...|++++|...++++++..+.. ...+..++.++...|++++|...+++..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6677888889999988888887754321 1366777888888899999888888775
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-09 Score=113.07 Aligned_cols=430 Identities=10% Similarity=0.031 Sum_probs=273.8
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC---hHHHHH
Q 007808 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA---IEAAYK 156 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~ 156 (589)
...+.+..|++....+ +-|..+|..++..+...+.++.+..+|+.++.. ++.+...|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455566666666655 468889999999998889999999999999987 56677788888888888888 999999
Q ss_pred HHccCCC-----CCeehHHHHHHHHHhCCCH--------HHHHHHHHhCC------CC-ChhHHHHHHHHHhc-------
Q 007808 157 VFGEMDE-----RNVVVWTSMINGYISCGDI--------VSARCLFELAP------ER-DVILWNTIVSGYID------- 209 (589)
Q Consensus 157 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~l~~~~~~------- 209 (589)
+|++... +++..|...+.-..+.++. +...++|+... ++ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9998865 5666777777666555543 22335555421 22 33456555554332
Q ss_pred --CCChHHHHHHhcccCC-CChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHH
Q 007808 210 --VRNMIEARKLFDQMPK-KDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRML 286 (589)
Q Consensus 210 --~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 286 (589)
.++++.+.++|++++. |... +..+-..|.. ++.. + +..+...++.- ...+++.|...+.++.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~-~~~~w~~Y~~---fe~~---~------~~~~a~~~~~e--~~~~y~~Ar~~~~e~~ 269 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDC-LESMWQRYTQ---WEQD---V------NQLTARRHIGE--LSAQYMNARSLYQDWL 269 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSS-HHHHHHHHHH---HHHH---H------CTTTHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHH-HHHHHHHHHH---HHHh---c------CcchHHHHHHH--hhHHHHHHHHHHHHHH
Confidence 2345566666666654 2211 1111111110 0000 0 00000001100 0112333444443322
Q ss_pred Hc--C--C-CC-----------C-----c---HHHHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCChhHHHH
Q 007808 287 TE--G--R-VF-----------P-----N---DATIVTVLSACARLG-------ALDFSKWVHVYAEYNGYQGNVCVGNA 335 (589)
Q Consensus 287 ~~--~--~-~~-----------p-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~ 335 (589)
.. + . ++ | + ...|...+.---..+ ..+.+..+|++++.. ++....+|..
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ 348 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFN 348 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHH
T ss_pred HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 11 0 0 00 1 1 122333333222221 123455678887776 3667888888
Q ss_pred HHHHHHhcCChHHHH-HHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC---------CCCC-------
Q 007808 336 LIDMYAKCGIIENAV-DVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAG---------EMPD------- 395 (589)
Q Consensus 336 l~~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---------~~p~------- 395 (589)
.+..+...|+.++|. ++|++... .+...|...+....+.|++++|.++|+++.... -.|+
T Consensus 349 ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 349 MANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 899888999999996 99987763 355567778888889999999999999988631 0132
Q ss_pred -----HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHhhC--CCCCCHHHH
Q 007808 396 -----GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG-RLAEAVDFVKRM--PIEADAVIW 467 (589)
Q Consensus 396 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~ 467 (589)
...|...+....+.|+.+.|.++|.++++.. -.+....|...+..-.+.+ +.+.|.++|+.. ..+-+...|
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w 507 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYI 507 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHH
Confidence 2357777777788899999999999997641 1122344544444444444 589999999987 233356667
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccCCC---CCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 468 ANLLGSCRVYKNVELAELALERLTELEPK---NPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
...+......|+.+.|..+|++++...|+ ....|..++..-.+.|+.+.+.++.+++.+.-
T Consensus 508 ~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 508 NKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 78888788889999999999999998873 44678888888889999999999999997544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.7e-13 Score=125.36 Aligned_cols=221 Identities=13% Similarity=0.070 Sum_probs=153.7
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CC-
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNA-------GEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDY-----SI- 428 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~- 428 (589)
.++..+...+...|++++|+.+++++.+. ........+..+...+...|++++|...++++.... +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45666777777778888888877777652 112234567777788888888888888888776531 11
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhCC-C--------CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-----
Q 007808 429 VPQIEHYGCMVDLLARAGRLAEAVDFVKRMP-I--------EA-DAVIWANLLGSCRVYKNVELAELALERLTEL----- 493 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 493 (589)
+.....+..+...|...|++++|++.++++. . .| ....+..+...+...|++++|++.+++++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2235667788888889999999888888762 1 12 2455677778899999999999999999987
Q ss_pred ---CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC-------CccCCccce----------------eeeC--Ceee
Q 007808 494 ---EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG-------FKKLPGCSS----------------IEVN--EVVM 545 (589)
Q Consensus 494 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~----------------~~~~--~~~~ 545 (589)
.|....++..++.+|...|++++|++.++++.+.. ..+.....+ .... ....
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 56666789999999999999999999999986421 111110000 0000 0111
Q ss_pred eeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 546 LGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 546 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
..+...+|+.+.++..+|.+|...|+.++|+.+....
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1155678999999999999999999999888877644
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-11 Score=110.19 Aligned_cols=205 Identities=8% Similarity=-0.016 Sum_probs=157.9
Q ss_pred CcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC---CCcchHHHHHH
Q 007808 293 PNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT---KDLITWNTIIS 369 (589)
Q Consensus 293 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 369 (589)
.|+..+......+...|++++|...+..+.+...+++...+..+..++...|++++|++.|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456788888889999999999999999999887546777777799999999999999999998763 35567888999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-H-------hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC---hHHHHHH
Q 007808 370 GLAMHGRGAGALSLFHEMKNAGEMPD-G-------ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ---IEHYGCM 438 (589)
Q Consensus 370 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l 438 (589)
+|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|++.|+++++ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999884 443 4 3477778888899999999999998874 4455 5677778
Q ss_pred HHHHHhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 439 VDLLARAGRLAEAVDFVKRMP--IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
..+|...|+. .++++. ...+...+.... ....+.+++|...++++++++|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766543 233321 122344444333 234567899999999999999999887777766643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-11 Score=108.87 Aligned_cols=251 Identities=11% Similarity=0.031 Sum_probs=173.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 007808 266 IGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGI 345 (589)
Q Consensus 266 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (589)
++-..-.|.+..++.-...+.. ..++ ....-+.+++...|+.... ..-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~-~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDN-TLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCH-HHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT-
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchH-HHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc-
Confidence 3445566777777763322211 1222 2333445666666665531 11223333444343333 322
Q ss_pred hHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHH
Q 007808 346 IENAVDVFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQS 421 (589)
Q Consensus 346 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 421 (589)
|+..|++... ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.+++
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6677776653 445556678888999999999999999987755322 456677888899999999999999999
Q ss_pred hHHhcCCCC-----ChHHHHHHHHH--HHhcC--CHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 422 MAMDYSIVP-----QIEHYGCMVDL--LARAG--RLAEAVDFVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 422 ~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
|.+ ..| +..+...|+.+ ....| ++.+|..+|+++ ...|+..+...++.++.+.|++++|++.++.+.
T Consensus 162 ~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 162 YTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 964 346 24555555555 33334 999999999998 445663344445558899999999999999888
Q ss_pred cc----------CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHH
Q 007808 492 EL----------EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRA 561 (589)
Q Consensus 492 ~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 561 (589)
+. +|+++.++.+++.+....|+ +|.++++++. +.+|++|-+.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~------------------------~~~P~hp~i~d~ 292 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV------------------------KLDHEHAFIKHH 292 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH------------------------HTTCCCHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH------------------------HhCCCChHHHHH
Confidence 76 58899999899888888887 8999999997 789999998876
Q ss_pred HH
Q 007808 562 EA 563 (589)
Q Consensus 562 l~ 563 (589)
-.
T Consensus 293 ~~ 294 (310)
T 3mv2_B 293 QE 294 (310)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-11 Score=117.64 Aligned_cols=222 Identities=8% Similarity=-0.040 Sum_probs=137.5
Q ss_pred HHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCC--C---CC-CHhHHH
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDT-----KD----LITWNTIISGLAMHGRGAGALSLFHEMKNAG--E---MP-DGITFI 400 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~---~p-~~~~~~ 400 (589)
....+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+.. . .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566777777776665542 11 2356666777777777777777777765420 0 11 133566
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC-C-----CCCC-HHHHHH
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM-P-----IEAD-AVIWAN 469 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~-~~~~~~ 469 (589)
.+..+|...|++++|.+.++++..-..-.++ ..++..++.+|...|++++|++.+++. . ..|. ..++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 6777777777777777777766542111111 345666777777777777777777765 1 2332 345566
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHccCCC-----CCcchHHHHHHHhhcCC---hHHHHHHHHHhhhCCCccCCccceeeeC
Q 007808 470 LLGSCRVYKNVELAELALERLTELEPK-----NPANFVMLSNIYGDLGR---WKDVARIKVAMRDTGFKKLPGCSSIEVN 541 (589)
Q Consensus 470 l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 541 (589)
+...+.+.|++++|...+++++++.+. ....+..+..++...|+ +++|+..+++.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----------------- 329 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----------------- 329 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-----------------
Confidence 667777777888888877777775332 12234556666667777 66676666654
Q ss_pred CeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 542 EVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
...|+...++..+|.+|...|+.++|+.+....
T Consensus 330 --------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 330 --------NLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 244566677777888888887777777665543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-11 Score=103.07 Aligned_cols=169 Identities=12% Similarity=-0.003 Sum_probs=142.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC 406 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 406 (589)
...+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345667788888999999999999988743 56678889999999999999999999998852 34677888889999
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
...|++++|.+.++++... .+.+...+..++..|...|++++|.+.++++ .. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998764 3456778888999999999999999999987 22 346778888889999999999999
Q ss_pred HHHHHHHccCCCCCcch
Q 007808 485 LALERLTELEPKNPANF 501 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~~ 501 (589)
..++++++..|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999998866543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-10 Score=112.86 Aligned_cols=233 Identities=11% Similarity=-0.018 Sum_probs=112.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC-hhHHHHHHH
Q 007808 265 LIGGYANNGLFFEVLDAFKRMLTEGRVFPN----DATIVTVLSACARLGALDFSKWVHVYAEYNGYQ-GN-VCVGNALID 338 (589)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~ 338 (589)
....+...|++++|+..|+++.+.....++ ..++..+...+...|+++.|...+.++.+.... ++ ..
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~------- 179 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI------- 179 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH-------
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh-------
Confidence 344456667777777777766553211122 234555555566666666666655554432100 00 00
Q ss_pred HHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHhccCcHH
Q 007808 339 MYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNA----GEMP-DGITFIGILCACTHMGLVE 413 (589)
Q Consensus 339 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 413 (589)
....+++.+..+|...|++++|++.+++..+. +-.+ ...++..+..+|...|+++
T Consensus 180 --------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 180 --------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred --------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 00123344444555555555555555544431 1011 1224455555566666666
Q ss_pred HHHHHHHHhHHhc---CCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC----CC--CCC-HHHHHHHHHHHhcCCC---H
Q 007808 414 EGLSYFQSMAMDY---SIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM----PI--EAD-AVIWANLLGSCRVYKN---V 480 (589)
Q Consensus 414 ~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~ 480 (589)
+|...+++...-. +.+....++..++.+|.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 6666665554310 11112445555666666666666666666554 10 121 2223333344555555 5
Q ss_pred HHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 481 ELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 481 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+|...+++. ...|.....+..++.+|...|++++|.+.+++..
T Consensus 320 ~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 320 HDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555542 1222223455566666666666666666666553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-11 Score=113.48 Aligned_cols=170 Identities=12% Similarity=-0.006 Sum_probs=132.0
Q ss_pred ChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHhccCcHHHHHHHH
Q 007808 345 IIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNA----GEMPD-GITFIGILCACTHMGLVEEGLSYF 419 (589)
Q Consensus 345 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 419 (589)
++++|...|++. +..|...|++++|++.|++..+. |-.++ ..+|..+..+|...|++++|+..+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776653 55677788888888888877652 21122 457888889999999999999999
Q ss_pred HHhHHhcCCCCC----hHHHHHHHHHHHhc-CCHHHHHHHHhhC-CCCC---C----HHHHHHHHHHHhcCCCHHHHHHH
Q 007808 420 QSMAMDYSIVPQ----IEHYGCMVDLLARA-GRLAEAVDFVKRM-PIEA---D----AVIWANLLGSCRVYKNVELAELA 486 (589)
Q Consensus 420 ~~~~~~~~~~~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~p---~----~~~~~~l~~~~~~~g~~~~A~~~ 486 (589)
++.+.-..-..+ ..+++.+..+|... |++++|+..|++. .+.| + ..++..+...+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 887653211112 35788899999996 9999999999887 2222 2 35677888999999999999999
Q ss_pred HHHHHccCCCCCc-------chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 487 LERLTELEPKNPA-------NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 487 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|++++++.|++.. .+..++.++...|++++|+..+++..
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988665 46788999999999999999999985
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=114.38 Aligned_cols=161 Identities=9% Similarity=-0.031 Sum_probs=134.8
Q ss_pred CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHH
Q 007808 393 MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLL 471 (589)
Q Consensus 393 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 471 (589)
+.+...+..+...+...|++++|...|+++.... +.+...+..+..+|.+.|++++|+..++++ ...|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 3345567778888899999999999999987632 335678888999999999999999999998 4567665443333
Q ss_pred -HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccc
Q 007808 472 -GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLS 550 (589)
Q Consensus 472 -~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (589)
..+...++.++|+..++++++.+|+++.++..++.+|...|++++|+..++++. +
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l------------------------~ 247 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHL------------------------R 247 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------H
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHH------------------------h
Confidence 346677888889999999999999999999999999999999999999999986 7
Q ss_pred cCCCc--hHHHHHHHHHHHHcccCCCCcchH
Q 007808 551 RELDR--KSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 551 ~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
.+|++ +.++..|+.+|..+|+.++++...
T Consensus 248 ~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 248 XDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp HCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 88888 899999999999999988766543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-11 Score=113.30 Aligned_cols=218 Identities=11% Similarity=-0.005 Sum_probs=155.4
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------C--CcchHHHHHHHHHhCCChHHH
Q 007808 310 ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT-------K--DLITWNTIISGLAMHGRGAGA 380 (589)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A 380 (589)
++++|...+..+ +..|...|++++|.+.|.+... + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777666655 3456778888888888876542 1 135788889999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HhHHHHHHHHHhcc-CcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHH
Q 007808 381 LSLFHEMKNAGE---MPD--GITFIGILCACTHM-GLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 381 ~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 450 (589)
+..+++..+... .+. ..++..+...|... |++++|+..|++.+.-..-..+ ..++..++..|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999998876211 111 34688888999996 9999999999998753211111 3568889999999999999
Q ss_pred HHHHHhhC-CCCCCH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc-----hHHHHHHHh--hcCCh
Q 007808 451 AVDFVKRM-PIEADA--------VIWANLLGSCRVYKNVELAELALERLTELEPKNPAN-----FVMLSNIYG--DLGRW 514 (589)
Q Consensus 451 A~~~~~~~-~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 514 (589)
|+..|+++ ...|+. ..+..+..++...|++++|+..|+++++++|..... +..++..+. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 223321 256777788999999999999999999999986553 344566664 46789
Q ss_pred HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHH
Q 007808 515 KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 515 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 566 (589)
++|+..++++. .++|.+..++..+....
T Consensus 257 ~~A~~~~~~~~------------------------~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 257 SEHCKEFDNFM------------------------RLDKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHTTSS------------------------CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCC------------------------ccHHHHHHHHHHHHHHh
Confidence 99999988774 56777766666555554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=98.28 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=102.4
Q ss_pred CCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHH
Q 007808 428 IVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVML 504 (589)
Q Consensus 428 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 504 (589)
+.|+ ...+...+..|.+.|++++|++.|+++ ...| +...|..+..++.+.|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 456777889999999999999999987 3444 678888899999999999999999999999999999999999
Q ss_pred HHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHH
Q 007808 505 SNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 505 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 566 (589)
+.+|...|++++|++.+++.. +++|+++.++..|++++
T Consensus 88 g~~~~~~~~~~~A~~~~~~al------------------------~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDAL------------------------QVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHHHH------------------------HHCcCCHHHHHHHHHhc
Confidence 999999999999999999986 89999999999998764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.7e-10 Score=109.94 Aligned_cols=264 Identities=10% Similarity=-0.031 Sum_probs=189.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCChHHHHHHHhhCCC-----CCc----chHHH
Q 007808 300 TVLSACARLGALDFSKWVHVYAEYNGYQGNV----CVGNALIDMYAKCGIIENAVDVFNSMDT-----KDL----ITWNT 366 (589)
Q Consensus 300 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~ 366 (589)
.....+...|+++.|...+..........+. ..+..+...+...|++++|...+++... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3444567889999999999998876532222 2466777888999999999999987652 122 23566
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC----CCC--CC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC-CC--ChHHHH
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNA----GEM--PD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSI-VP--QIEHYG 436 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~----~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~--~~~~~~ 436 (589)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++......- .+ ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 788899999999999999987752 222 32 345666788899999999999999988653221 11 235677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC---CCC-CHHHHH-----HHHHHHhcCCCHHHHHHHHHHHHccCCCCCc----chHH
Q 007808 437 CMVDLLARAGRLAEAVDFVKRMP---IEA-DAVIWA-----NLLGSCRVYKNVELAELALERLTELEPKNPA----NFVM 503 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~~~---~~p-~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~ 503 (589)
.+...+...|++++|...+++.. ..+ ....+. ..+..+...|++++|...++++.+..|.++. .+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 88899999999999999998761 111 111222 2234477999999999999999987765322 3568
Q ss_pred HHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhh
Q 007808 504 LSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 504 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
++.++...|++++|...+++.....-. . ...++...++..++.++...|+.++|.+.+..
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~--~----------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARS--L----------------RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH--T----------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHh--C----------------cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 899999999999999999988521100 0 01122335788899999999998888776554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-12 Score=116.96 Aligned_cols=203 Identities=11% Similarity=0.021 Sum_probs=95.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----C-CC
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNA------GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDY-----S-IV 429 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~ 429 (589)
++..+...|...|++++|+..++++.+. +-.| ...++..+...+...|++++|...++++.... . .+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4455555555555555555555555432 1112 22344445555555555555555555543321 0 01
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC--------CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc------
Q 007808 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI--------EA-DAVIWANLLGSCRVYKNVELAELALERLTEL------ 493 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 493 (589)
.....+..+...|...|++++|++.++++ .. .| ....+..+...+...|++++|...+++++++
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 11334444445555555555555544443 11 11 1233344444445555555555555555442
Q ss_pred ---CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 494 ---EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 494 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
.|.....+..+...+...+....+..+.+.. .........+|+.+.++..+|.+|...|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g 266 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG------------------SWYKACKVDSPTVNTTLRSLGALYRRQG 266 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------------------------CCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH------------------HHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 2222333333333333322222222111100 0011123467888999999999999999
Q ss_pred cCCCCcchHhhhh
Q 007808 571 QNNHPLTFIVVIF 583 (589)
Q Consensus 571 ~~~~~~~~~~~~~ 583 (589)
+.++|+.++....
T Consensus 267 ~~~~A~~~~~~al 279 (283)
T 3edt_B 267 KLEAAHTLEDCAS 279 (283)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999988776543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=129.44 Aligned_cols=171 Identities=8% Similarity=-0.071 Sum_probs=146.2
Q ss_pred HhCCChHHHHHHHHHHH--------HCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007808 372 AMHGRGAGALSLFHEMK--------NAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLL 442 (589)
Q Consensus 372 ~~~~~~~~A~~~~~~m~--------~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (589)
...|++++|++.+++.. + ..| +...+..+..++...|++++|.+.|+++.+.. +.+...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHH
Confidence 67899999999999988 4 334 55678888899999999999999999997642 34577888999999
Q ss_pred HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHH
Q 007808 443 ARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
.+.|++++|++.|+++ ...| +...+..+..++.+.|++++ ++.|+++++++|+++.++..++.+|.+.|++++|++.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999987 4455 56778888899999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 521 KVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
++++. +++|+++.++..++.++...|+
T Consensus 557 ~~~al------------------------~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVP------------------------PTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSC------------------------TTSTTHHHHHHHHHHHTC----
T ss_pred HHhhc------------------------ccCcccHHHHHHHHHHHHccCC
Confidence 99885 7899999999999999876665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=103.47 Aligned_cols=157 Identities=12% Similarity=0.065 Sum_probs=116.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHH-Hh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGS-CR 475 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~ 475 (589)
.+......+...|++++|...++++.... +.+...+..+..+|.+.|++++|+..++++ ...|+...+...... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 34556667788888999998888876532 234677888888888999999999999887 344544333222212 12
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCc
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDR 555 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 555 (589)
..++..+|+..++++++.+|+++..+..++.++...|++++|+..++++. +.+|+.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l------------------------~~~p~~ 141 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNIL------------------------KVNLGA 141 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------TTCTTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHH------------------------HhCccc
Confidence 22233357889999999999999999999999999999999999999885 566664
Q ss_pred --hHHHHHHHHHHHHcccCCCCcchHh
Q 007808 556 --KSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 556 --~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
+.++..++.++..+|+.++|+....
T Consensus 142 ~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 142 QDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 6689999999999999987665543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=106.81 Aligned_cols=166 Identities=8% Similarity=-0.036 Sum_probs=120.1
Q ss_pred CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC---C-HHHHH
Q 007808 395 DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA---D-AVIWA 468 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~-~~~~~ 468 (589)
+...+..+...+.+.|++++|...|++++......|. ...+..++.+|.+.|++++|+..|+++ ...| . ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3445555666667777777777777777653221111 455666777777777777777777766 2222 2 34455
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHHHccCCCCCcch-----------------HHHHHHHhhcCChHHHHHHHHH
Q 007808 469 NLLGSCRV--------YKNVELAELALERLTELEPKNPANF-----------------VMLSNIYGDLGRWKDVARIKVA 523 (589)
Q Consensus 469 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~ 523 (589)
.+..++.. .|++++|+..|+++++..|+++... ..++.+|.+.|++++|+..+++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55666666 8999999999999999999888777 7779999999999999999999
Q ss_pred hhhCCCccCCccceeeeCCeeeeeccccCCC---chHHHHHHHHHHHHc----------ccCCCCcchHhhhhh
Q 007808 524 MRDTGFKKLPGCSSIEVNEVVMLGCLSRELD---RKSIVRAEANMIKLL----------PQNNHPLTFIVVIFS 584 (589)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~ 584 (589)
+. +..|+ .+.++..+|.+|..+ |+.++|+.....+..
T Consensus 174 ~l------------------------~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 174 VF------------------------DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HH------------------------HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HH------------------------HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 86 55566 678999999999988 555667777665544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.4e-11 Score=105.74 Aligned_cols=185 Identities=11% Similarity=0.019 Sum_probs=132.9
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-HHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD----GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI-EHY 435 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 435 (589)
...+..+...+.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|+..|+++.+...-.+.. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 345566677788889999999999988874 332 2466777888888899999999998887654333332 244
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcch--------------
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANF-------------- 501 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-------------- 501 (589)
..+..++.+.|.. .++ .+..+...+...|++++|+..|+++++..|+++.+.
T Consensus 82 ~~~g~~~~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 82 YMRGLTNMALDDS-----ALQ---------GFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHHHHHC----------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh-----hhh---------hhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 4455555544321 111 122233445568899999999999999999988765
Q ss_pred ---HHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCch---HHHHHHHHHHHHcccCCCC
Q 007808 502 ---VMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRK---SIVRAEANMIKLLPQNNHP 575 (589)
Q Consensus 502 ---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~~ 575 (589)
..++.+|.+.|++++|+..++++. +..|+++ .++..++.+|.++|+.++|
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l------------------------~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGML------------------------RDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------HHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHH------------------------HHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 467889999999999999999996 6778876 6799999999999999999
Q ss_pred cchHhhhhhc
Q 007808 576 LTFIVVIFST 585 (589)
Q Consensus 576 ~~~~~~~~~~ 585 (589)
+..+..+...
T Consensus 204 ~~~~~~l~~~ 213 (225)
T 2yhc_A 204 EKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9988877543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-12 Score=104.93 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=100.8
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK 515 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 515 (589)
|...+...|++++|++.+++. ...|+ ...+..+...|.+.|++++|++.|+++++++|+++.+|..++.+|.+.|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 566777889999999999887 44553 3445667789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcc
Q 007808 516 DVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLT 577 (589)
Q Consensus 516 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 577 (589)
+|+..+++.. +++|+++.++..+|.+|.+.|+.++++.
T Consensus 83 ~A~~~~~~al------------------------~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 83 KAVECYRRSV------------------------ELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHHHH------------------------HhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 9999999986 7999999999999999999999988654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=108.81 Aligned_cols=221 Identities=14% Similarity=0.096 Sum_probs=157.1
Q ss_pred HhcCChhHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC-------C----CcchHHHH
Q 007808 306 ARLGALDFSKWVHVYAEYN-------GYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDT-------K----DLITWNTI 367 (589)
Q Consensus 306 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 367 (589)
...|+++.|...++++.+. ..+....++..+...|...|++++|...|+++.+ + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877652 2233567788899999999999999999987652 1 34578889
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC------CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc-----CCCC-ChHH
Q 007808 368 ISGLAMHGRGAGALSLFHEMKNA------GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDY-----SIVP-QIEH 434 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~ 434 (589)
...|...|++++|+..+++..+. .-.| ...++..+...+...|++++|..+++++.... +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 1123 35678889999999999999999999986531 1122 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----------CCCC-HHHHHHHHHHHhc------CCCHHHHHHHHHHHHccCCCC
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRMP----------IEAD-AVIWANLLGSCRV------YKNVELAELALERLTELEPKN 497 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~p~~ 497 (589)
+..+..+|.+.|++++|++.++++. ..+. ...+..+...... ...+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999998762 1222 2233333333322 223445555555554455666
Q ss_pred CcchHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 498 PANFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 498 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
+.++..++.+|...|++++|.+++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77899999999999999999999998853
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.15 E-value=7e-10 Score=89.96 Aligned_cols=125 Identities=17% Similarity=0.212 Sum_probs=77.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhc
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRV 476 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 476 (589)
+..+...+...|++++|..+++++... .+.+...+..++..+...|++++|...++++ . .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344445555555555555555555432 1223445555555566666666666666555 1 12345556666667777
Q ss_pred CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 477 YKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.|++++|...++++++..|.++..+..++.++.+.|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777777764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=97.97 Aligned_cols=180 Identities=10% Similarity=-0.003 Sum_probs=127.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHh----H
Q 007808 329 NVCVGNALIDMYAKCGIIENAVDVFNSMDT--KD----LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGI----T 398 (589)
Q Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~ 398 (589)
+...+..+...+...|++++|...|+++.+ |+ ...+..++.+|.+.|++++|+..|+++.+. .|+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHH
Confidence 344566678889999999999999998873 32 246788899999999999999999999984 44322 4
Q ss_pred HHHHHHHHhc------------------cCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 399 FIGILCACTH------------------MGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 399 ~~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
+..+..++.. .|++++|...|+++++.. |+ ...+....... ......
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~~l~----~~~~~~------- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATKRLV----FLKDRL------- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHHHHH----HHHHHH-------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHHHHH----HHHHHH-------
Confidence 4455555543 467777777777776432 33 22222111100 000000
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 460 IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 460 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
......+...+.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|++.++.+...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00112355778899999999999999999999875 579999999999999999999999887544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=96.68 Aligned_cols=116 Identities=9% Similarity=0.063 Sum_probs=97.5
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
+...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3556777888999999999999999987 3344 6788888889999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 509 GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
...|++++|++.+++.. +++|++|........+...+.
T Consensus 100 ~~~g~~~~A~~~~~~al------------------------~~~p~~~~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQ------------------------ELIANXPEFXELSTRVSSMLE 137 (148)
T ss_dssp HHTTCHHHHHHHHHHHH------------------------HHHTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH------------------------HHCcCCCcchHHHHHHHHHHH
Confidence 99999999999999985 677777766655555554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.6e-10 Score=117.96 Aligned_cols=169 Identities=9% Similarity=-0.078 Sum_probs=129.3
Q ss_pred HhcCChHHHHHHHhhCC-----------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc
Q 007808 341 AKCGIIENAVDVFNSMD-----------TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHM 409 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 409 (589)
...|++++|++.+++.. ..+...+..+..+|...|++++|+..|+++.+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56788888888887765 2355677888888888888888888888888742 23566777888888888
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHH
Q 007808 410 GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELAL 487 (589)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 487 (589)
|++++|.+.|+++.+.. +.+...|..+..+|.+.|++++ ++.|+++ ...| +...|..+..++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888887532 2346677888888888888888 8888877 3344 5677788888888888888888888
Q ss_pred HHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 488 ERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 488 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
+++++++|++..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888888888888888888877555
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.13 E-value=5.8e-09 Score=95.41 Aligned_cols=239 Identities=10% Similarity=0.015 Sum_probs=156.9
Q ss_pred hcCCHHHHHHHHhhCCCCCc-hhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHH
Q 007808 240 NNGDVEECKRLFEEMPERNV-FSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVH 318 (589)
Q Consensus 240 ~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 318 (589)
-.|++..++.-...+...+. ..-..+.++|...|++... .. -.|....+..+...+ ..+ +...+
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~-~~~~~~a~~~la~~~-~~~----a~~~l 89 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DP-TSKLGKVLDLYVQFL-DTK----NIEEL 89 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CS-SSTTHHHHHHHHHHH-TTT----CCHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CC-CCHHHHHHHHHHHHh-ccc----HHHHH
Confidence 35666666664444433222 2222345677777776532 11 234433433333333 222 55666
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-----CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 007808 319 VYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTK-----DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEM 393 (589)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 393 (589)
++....+ +++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 6655544 445555567888888889999999998887432 445677788899999999999999999988 46
Q ss_pred C-----CHhHHHHHHHH--Hhc--cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC-C---
Q 007808 394 P-----DGITFIGILCA--CTH--MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP-I--- 460 (589)
Q Consensus 394 p-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~--- 460 (589)
| +..+...++.+ ... .+++.+|..+|+++... .|+..+...+..++.+.|++++|.+.++.+. .
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 6 35555666655 333 34899999999998643 3553333444558999999999999988652 1
Q ss_pred -------CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcch
Q 007808 461 -------EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANF 501 (589)
Q Consensus 461 -------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 501 (589)
.| ++.++..++......|+ +|.++++++.+..|++|.+.
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 24 45666566666666777 89999999999999987543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.5e-10 Score=115.34 Aligned_cols=149 Identities=18% Similarity=0.039 Sum_probs=102.6
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHH
Q 007808 374 HGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAV 452 (589)
Q Consensus 374 ~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 452 (589)
.|++++|+..+++..+. .| +...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|...|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 36777888888887764 34 4667777888888888888888888887642 2234667778888888888888888
Q ss_pred HHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhc---CChHHHHHHHHHhhh
Q 007808 453 DFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDL---GRWKDVARIKVAMRD 526 (589)
Q Consensus 453 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 526 (589)
+.++++ ...| +...+..+..++...|++++|.+.++++++++|+++.++..++.++... |++++|.+.+++..+
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 888876 3334 5667777888888888888888888888888888888888888888888 888888888888754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.2e-11 Score=99.57 Aligned_cols=94 Identities=10% Similarity=-0.031 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..+...+.+.|++++|+..|+++ ...| +...|..+..+|...|++++|+..|+++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 556777888899999999999999988 3445 67788888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhh
Q 007808 510 DLGRWKDVARIKVAMR 525 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~ 525 (589)
+.|++++|++.++++.
T Consensus 116 ~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 116 RLKAPLKAKECFELVI 131 (151)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999999886
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=101.46 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=141.0
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 347 ENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 347 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
+.....+......+...+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444555545455667777888899999999999999999985 55 5677888999999999999999999998643
Q ss_pred cCCCCChHHHHH-HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC--Ccc
Q 007808 426 YSIVPQIEHYGC-MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKN--PAN 500 (589)
Q Consensus 426 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 500 (589)
.|+...... ....+.+.++.++|++.+++. ...| +...+..+...+...|++++|+..|+++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455443332 333467788888899988887 3345 67788888999999999999999999999999988 789
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 501 FVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 501 ~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+..++.++...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999999988764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-09 Score=88.80 Aligned_cols=118 Identities=10% Similarity=0.031 Sum_probs=103.7
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHH
Q 007808 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
.+...+..++..+.+.|++++|++.++++ ...| +...+..+..++...|++++|...++++++..|+++.++..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34667788888999999999999999887 4444 677888888999999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 508 YGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
+.+.|++++|++.+++.. +.+|+++.++..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~------------------------~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKAL------------------------DLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHH------------------------HHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHH------------------------HhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999886 6789999999999999988764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-09 Score=85.68 Aligned_cols=131 Identities=15% Similarity=0.221 Sum_probs=108.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLL 442 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (589)
.|..++..+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677888888999999999999988753 335677788888888999999999999988753 234567788889999
Q ss_pred HhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 443 ARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999887 22 345777888889999999999999999999998886
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.8e-10 Score=96.95 Aligned_cols=156 Identities=10% Similarity=-0.011 Sum_probs=70.2
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC---CcchHHH----------------HHHHHHhCCChHHHHHHHHHHHHCCCCC-C
Q 007808 336 LIDMYAKCGIIENAVDVFNSMDTK---DLITWNT----------------IISGLAMHGRGAGALSLFHEMKNAGEMP-D 395 (589)
Q Consensus 336 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~ 395 (589)
....+...|++++|+..|++..+. +...|.. +..+|.+.|++++|+..|++..+. .| +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC
Confidence 344455566666666666655422 2233433 455555555555555555555542 23 3
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC--HHHHHHHHhhCCCCCCHH--HHHHHH
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGR--LAEAVDFVKRMPIEADAV--IWANLL 471 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~~--~~~~l~ 471 (589)
...+..+..++...|++++|...|+++++. .+.+...+..+..+|...|. .+.+...+++.. .|+.. .+....
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 344455555555555555555555555432 11224444444444443332 223333444332 22221 222223
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 472 GSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
.++...|++++|+..|++++++.|+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3334445555555555555555554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.8e-09 Score=92.77 Aligned_cols=161 Identities=9% Similarity=-0.085 Sum_probs=129.3
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC----cHHHHHHHHHHhHHhcCCCCChHH
Q 007808 359 KDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMG----LVEEGLSYFQSMAMDYSIVPQIEH 434 (589)
Q Consensus 359 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 434 (589)
.++..+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|.++|++.... -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 356667777777888888999999999888865 55667777777777 6 899999999988652 45677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHhhC-CCCCC---HHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 435 YGCMVDLLAR----AGRLAEAVDFVKRM-PIEAD---AVIWANLLGSCRV----YKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 435 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
+..|...|.. .+++++|++.|++. ...|. ...+..+...|.. .+++++|...|+++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7788888877 88999999999988 34443 6778888888877 88999999999999998 66688999
Q ss_pred HHHHHHhhc-C-----ChHHHHHHHHHhhhCC
Q 007808 503 MLSNIYGDL-G-----RWKDVARIKVAMRDTG 528 (589)
Q Consensus 503 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 528 (589)
.|+.+|... | ++++|+..+++..+.|
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 999999864 3 8999999999986433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.4e-10 Score=92.73 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=89.7
Q ss_pred CCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 007808 392 EMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWA 468 (589)
Q Consensus 392 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 468 (589)
+.| +...+..+...+.+.|++++|...|++++.. .+.+...|..+..+|...|++++|++.|+++ .+.| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 455 3456778888999999999999999999863 2345788999999999999999999999998 3445 567888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
.+..+|...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 899999999999999999999999999843
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=87.50 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=101.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
+...+..++..+...|++++|++.++++ ...| +...+..+...+...|++++|.+.++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456677788888888888888888876 2233 6677888888899999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 509 GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
.+.|++++|.+.+++.. +.+|+++.++..++.++..+|+.+
T Consensus 91 ~~~~~~~~A~~~~~~~~------------------------~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKAL------------------------ELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHH------------------------HHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHH------------------------hcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999885 678999999999999999988763
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.4e-10 Score=116.05 Aligned_cols=147 Identities=12% Similarity=0.026 Sum_probs=115.4
Q ss_pred cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHH
Q 007808 409 MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELA 486 (589)
Q Consensus 409 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 486 (589)
.|++++|.+.++++.+. .+.+...+..+...|.+.|++++|++.+++. ...| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999988642 2334788999999999999999999999988 5555 577888889999999999999999
Q ss_pred HHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHH
Q 007808 487 LERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 487 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~ 566 (589)
++++++++|+++..+..++.+|.+.|++++|++.+++.. +++|+++.++..++.++
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------------------~~~p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH------------------------QLLPEEPYITAQLLNWR 135 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 78899999999999999
Q ss_pred HHc---ccCCCCcchHhh
Q 007808 567 KLL---PQNNHPLTFIVV 581 (589)
Q Consensus 567 ~~~---~~~~~~~~~~~~ 581 (589)
..+ |+.++|+..+..
T Consensus 136 ~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 136 RRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HHhhccccHHHHHHHHHH
Confidence 999 777767666544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.07 E-value=9.3e-10 Score=94.22 Aligned_cols=158 Identities=11% Similarity=0.055 Sum_probs=113.7
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL 441 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (589)
.+..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...++++... .|+...+..+...
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 3455566677778888888887776653 34 4566777777777888888888888777543 2333333222212
Q ss_pred -HHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC--CcchHHHHHHHhhcCChHH
Q 007808 442 -LARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKN--PANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 442 -~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~ 516 (589)
+...+...+|+..+++. ...| +...+..+..++...|++++|...|+++++.+|+. +.++..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 12222333467777776 3455 57788888899999999999999999999999875 4589999999999999999
Q ss_pred HHHHHHHhh
Q 007808 517 VARIKVAMR 525 (589)
Q Consensus 517 A~~~~~~~~ 525 (589)
|...+++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=87.93 Aligned_cols=114 Identities=11% Similarity=0.012 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++.+.|++++|+..++++++++|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445677788899999999999999887 3344 67888889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccC------CCchHHHHHHHHHHHHc
Q 007808 510 DLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRE------LDRKSIVRAEANMIKLL 569 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~~~~~~~l~~~~~~~ 569 (589)
..|++++|+..+++.. +++ |+++.+...++.+..++
T Consensus 84 ~~~~~~~A~~~~~~al------------------------~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 84 AVKEYASALETLDAAR------------------------TKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HTTCHHHHHHHHHHHH------------------------HHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHhCHHHHHHHHHHHH------------------------HhCcccCCchhHHHHHHHHHHHHHhh
Confidence 9999999999999986 566 99999999999887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-09 Score=94.41 Aligned_cols=120 Identities=8% Similarity=0.023 Sum_probs=48.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCC
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKN 479 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 479 (589)
+..++...|++++|...|++.++. .+.+...+..+..+|...|++++|+..|+++ ...| +...+..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 444444445555555555444432 1122344444444455555555555544444 2222 23344444444332221
Q ss_pred --HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHh
Q 007808 480 --VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 480 --~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
.+.+...++++....|. ...+..++.++...|++++|+..+++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~a 183 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKV 183 (208)
T ss_dssp HHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 22333333333322221 112333444444445555555555444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-09 Score=85.16 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=93.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..++..+...|++++|++.++++ .. +.+...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456667777788888888888888776 22 3356677777888888899999999999999888888888889999999
Q ss_pred hcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 510 DLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
..|++++|...++++. +.+|+++.++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKAL------------------------ELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHH------------------------HhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999988885 677888888888888887654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-09 Score=95.15 Aligned_cols=159 Identities=12% Similarity=-0.026 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC----CHHHHHH
Q 007808 378 AGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG----RLAEAVD 453 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~ 453 (589)
.+|+.+|++..+.| +...+..+...|...+++++|..+|++..+. -++..+..|...|.. + ++++|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 35788899988864 6777888888899999999999999999753 367778888899988 6 8999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCC--CCcchHHHHHHHhh----cCChHHHHHHHHH
Q 007808 454 FVKRMPIEADAVIWANLLGSCRV----YKNVELAELALERLTELEPK--NPANFVMLSNIYGD----LGRWKDVARIKVA 523 (589)
Q Consensus 454 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 523 (589)
.|++.....+...+..+...|.. .+++++|++.|+++.+.+|. ++.++..|+.+|.. .+++++|+.++++
T Consensus 75 ~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 75 LAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99998434567788888888877 89999999999999999983 47899999999999 8899999999999
Q ss_pred hhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 524 MRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
.. ++ |+++.++..|+.+|..-
T Consensus 155 A~------------------------~~-~~~~~a~~~Lg~~y~~g 175 (212)
T 3rjv_A 155 SS------------------------SL-SRTGYAEYWAGMMFQQG 175 (212)
T ss_dssp HH------------------------HT-SCTTHHHHHHHHHHHHC
T ss_pred HH------------------------Hc-CCCHHHHHHHHHHHHcC
Confidence 85 34 67788899999999754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.7e-09 Score=95.93 Aligned_cols=141 Identities=13% Similarity=0.004 Sum_probs=117.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
.+..+...+...|++++|++.++++. +|+...+..+..++...|++++|+..++++++++|+++.++..++.+|...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 34557788899999999999999984 77888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 514 WKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 514 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
+++|++.++++.+.. |....+. ....++..+|+.+.++..+|.+|..+|+.++|+..+....
T Consensus 87 ~~~A~~~~~~al~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL----RGNQLID----YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHHTT----TTCSEEE----CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCccHHH----HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999996432 2111111 1112445778888999999999999999988888766543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-08 Score=90.06 Aligned_cols=123 Identities=12% Similarity=0.007 Sum_probs=105.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCR 475 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 475 (589)
.+..+...+...|++++|...|+++. .|+...+..++.+|.+.|++++|++.++++ .. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34556667778899999999888773 467788888999999999999999999887 23 336778888889999
Q ss_pred cCCCHHHHHHHHHHHHccCCCCC----------------cchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 476 VYKNVELAELALERLTELEPKNP----------------ANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..|++++|++.|++++++.|.+. .++..++.+|.+.|++++|.+.++++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999998877 899999999999999999999999986
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.6e-09 Score=98.37 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=143.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 007808 272 NGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR-LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAV 350 (589)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (589)
.|++++|.+++++..+.. +.. +.+ .++++.|...|..+ +..|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 456677777777666532 110 111 34555555554433 33455666666666
Q ss_pred HHHhhCCC-----CC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCC--HhHHHHHHHHHhccCcHHHHH
Q 007808 351 DVFNSMDT-----KD----LITWNTIISGLAMHGRGAGALSLFHEMKNAG---EMPD--GITFIGILCACTHMGLVEEGL 416 (589)
Q Consensus 351 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~ 416 (589)
..|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 66654431 11 2367778888888999999999988876521 1222 3467788888888 9999999
Q ss_pred HHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC-C---CCC----HHHHHHHHHHHhcCCCHHHHH
Q 007808 417 SYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP-I---EAD----AVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p~----~~~~~~l~~~~~~~g~~~~A~ 484 (589)
..|++.+.-..-..+ ..++..+..+|.+.|++++|++.|+++. + .++ ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988653211111 4578888999999999999999998872 1 122 235556667778889999999
Q ss_pred HHHHHHHccCCCCCcc-----hHHHHHHHhhcCChHHHHH
Q 007808 485 LALERLTELEPKNPAN-----FVMLSNIYGDLGRWKDVAR 519 (589)
Q Consensus 485 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 519 (589)
..|++++ ++|..... ...++..+ ..|+.+.+.+
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999 99976543 33445545 5677666655
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=89.02 Aligned_cols=114 Identities=13% Similarity=0.033 Sum_probs=95.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666788889999999999999987 3344 67778888899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 510 DLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
..|++++|++.+++.. +++|+++........+...+
T Consensus 98 ~~g~~~~A~~~~~~al------------------------~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR------------------------ALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HTTCHHHHHHHHHHHH------------------------HHHHTCGGGHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH------------------------HhCCCCcchHHHHHHHHHHH
Confidence 9999999999999986 67777777666666555433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-08 Score=93.80 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=47.8
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH--HHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCC------
Q 007808 410 GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA--EAVDFVKRM-PIEA-DAVIWANLLGSCRVYKN------ 479 (589)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~------ 479 (589)
+++++++.+++++... .+.+...|+.-..++.+.|.++ +++++++++ ...| |...|+.....+...|.
T Consensus 124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhh
Confidence 3445555555554432 1233444444444444444444 455554444 1122 44444444444444443
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
++++++.+++++..+|.|..+|..+..++.+.|+
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 4555555555555555555555555555555554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.7e-08 Score=88.69 Aligned_cols=213 Identities=12% Similarity=0.094 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007808 275 FFEVLDAFKRMLTEGRVFPN-DATIVTVLSACARLG--ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVD 351 (589)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (589)
.++|++.+..++..+ |+ ...++.--.++...+ +++++...+..+...+ |.+..+
T Consensus 49 s~~aL~~t~~~L~~n---P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~a------------------- 105 (306)
T 3dra_A 49 SERALHITELGINEL---ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQI------------------- 105 (306)
T ss_dssp SHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHH-------------------
T ss_pred CHHHHHHHHHHHHHC---cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHH-------------------
Confidence 356777777776644 43 333444444444555 5555555555555543 223333
Q ss_pred HHhhCCCCCcchHHHHHHHH----HhC---CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHH--HHHHHHHHh
Q 007808 352 VFNSMDTKDLITWNTIISGL----AMH---GRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVE--EGLSYFQSM 422 (589)
Q Consensus 352 ~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~ 422 (589)
|+.-...+ ... +++++++++++++.+.. +-+...|..-...+.+.|.++ +++++++++
T Consensus 106 ------------W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~ 172 (306)
T 3dra_A 106 ------------WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKV 172 (306)
T ss_dssp ------------HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 33322222 222 45666666666666532 224455555555555555555 666666666
Q ss_pred HHhcCCCCChHHHHHHHHHHHhcCC------HHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCH-HHHHHHHHHHHcc
Q 007808 423 AMDYSIVPQIEHYGCMVDLLARAGR------LAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNV-ELAELALERLTEL 493 (589)
Q Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 493 (589)
+.. .+-|...|+.-..++.+.|+ ++++++.++++ ...| |...|+.+...+.+.|+. +....++++++++
T Consensus 173 i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 173 IDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 542 23345555555555555554 66666666665 2233 566666666666666653 3345566666665
Q ss_pred C---CCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 494 E---PKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 494 ~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+ |.++.++..++.+|.+.|+.++|+++++.+.
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 5 6667777777777777777777777777774
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.4e-09 Score=84.72 Aligned_cols=115 Identities=10% Similarity=0.007 Sum_probs=96.1
Q ss_pred CCCC-HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 007808 392 EMPD-GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWA 468 (589)
Q Consensus 392 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 468 (589)
+.|+ ...+......+.+.|++++|++.|+++++. .+.+...|..+..+|.+.|++++|++.++++ .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4554 346777888899999999999999988753 2345778888999999999999999999987 3444 577888
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
.+..++...|++++|++.|+++++++|+++.++..|+.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 8999999999999999999999999999999888887764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-09 Score=100.84 Aligned_cols=196 Identities=9% Similarity=-0.016 Sum_probs=148.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007808 308 LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEM 387 (589)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 387 (589)
.|++++|.+++++..+.... . .+...++++.|...|.+ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56778888888887764321 1 01115788888888775 467788999999999999987
Q ss_pred HHCCC---CC--CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC--CC--hHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 388 KNAGE---MP--DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIV--PQ--IEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 388 ~~~~~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
.+... .+ -..+|..+...|...|++++|+..|++.+.-..-. +. ..++..+..+|.. |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 75211 11 13478888899999999999999999876532111 11 4577888999988 9999999999887
Q ss_pred C-CCC---C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc------chHHHHHHHhhcCChHHHHHHHHHh
Q 007808 459 P-IEA---D----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPA------NFVMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 459 ~-~~p---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
. +.| + ..++..+...+...|++++|+..|++++++.|.+.. .+..++.++...|++++|+..+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 111 1 456778889999999999999999999998765432 6777888899999999999999998
Q ss_pred h
Q 007808 525 R 525 (589)
Q Consensus 525 ~ 525 (589)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-09 Score=90.96 Aligned_cols=125 Identities=8% Similarity=-0.033 Sum_probs=68.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHh
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCR 475 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 475 (589)
.+..+...+...|++++|...+++.... .+.+...+..++.++...|++++|++.+++. ...| +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555556666666666666665542 1223455555566666666666666666554 2222 3445555555566
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHH--HhhcCChHHHHHHHHHh
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNI--YGDLGRWKDVARIKVAM 524 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~ 524 (589)
..|++++|...+++++++.|.++..+..+..+ +.+.|++++|++.+++.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666666666666555555333333 55556666666655544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=7.3e-09 Score=81.56 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455677788888888888888888877 2333 67777888888889999999999999999999998999999999999
Q ss_pred hcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 510 DLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
..|++++|.+.+++.. +.+|+++.++..++.+..
T Consensus 84 ~~~~~~~A~~~~~~~~------------------------~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL------------------------KHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HTTCHHHHHHHHHHHH------------------------TTCTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH------------------------HcCCCCHHHHHHHHHhhc
Confidence 9999999999999886 678999999888887753
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.6e-09 Score=85.08 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=98.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 505 (589)
+...+..+...+...|++++|++.|++. ...|+ ...+..+..++...|++++|+..++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4667778888888999999999988887 55676 567777888899999999999999999999999999999999
Q ss_pred HHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 506 NIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 506 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
.+|...|++++|...+++.. +++|+++.+...++.+..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al------------------------~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCV------------------------SLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHH------------------------HHCSSCHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHH------------------------HcCCCcHHHHHHHHHHHh
Confidence 99999999999999999886 788999999988888764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.7e-09 Score=89.28 Aligned_cols=94 Identities=14% Similarity=0.096 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555555666666666665554 2223 44555555566666666666666666666666666666666666666
Q ss_pred hcCChHHHHHHHHHhh
Q 007808 510 DLGRWKDVARIKVAMR 525 (589)
Q Consensus 510 ~~g~~~~A~~~~~~~~ 525 (589)
..|++++|++.+++..
T Consensus 91 ~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGI 106 (164)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 6666666666666654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.8e-08 Score=90.70 Aligned_cols=159 Identities=8% Similarity=-0.011 Sum_probs=121.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC-CCCHh----HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNAGE-MPDGI----TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGC 437 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ 437 (589)
.+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.....-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999999887321 22211 2334666777888999999999998763222233 336888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCC-----CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC------CcchH
Q 007808 438 MVDLLARAGRLAEAVDFVKRMP-----IEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKN------PANFV 502 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 502 (589)
++.+|...|++++|+..++++. .+.+ ..++..+...|.+.|++++|...+++++++.+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999888762 1122 2467788899999999999999999999865432 45889
Q ss_pred HHHHHHhhcCC-hHHHHHHHHHhh
Q 007808 503 MLSNIYGDLGR-WKDVARIKVAMR 525 (589)
Q Consensus 503 ~l~~~~~~~g~-~~~A~~~~~~~~ 525 (589)
.++.+|.+.|+ +++|++.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999998875
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=6.5e-10 Score=97.34 Aligned_cols=144 Identities=10% Similarity=-0.024 Sum_probs=105.8
Q ss_pred hccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-C----------------HHHHH
Q 007808 407 THMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-D----------------AVIWA 468 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~ 468 (589)
...|+++.+.+.|+..... .......+..+...+.+.|++++|++.|+++ ...| + ...+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3345555555554432211 0112345566677777788888888877765 2222 1 26777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeec
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGC 548 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (589)
.+..++...|++++|+..++++++++|+++.++..++.+|...|++++|++.+++..
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al----------------------- 149 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA----------------------- 149 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH-----------------------
Confidence 788889999999999999999999999999999999999999999999999999985
Q ss_pred cccCCCchHHHHHHHHHHHHcccCCCCc
Q 007808 549 LSRELDRKSIVRAEANMIKLLPQNNHPL 576 (589)
Q Consensus 549 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 576 (589)
+++|+++.++..++.++..+|+..++.
T Consensus 150 -~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 150 -SLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -HHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -HHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998877755
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-09 Score=103.14 Aligned_cols=87 Identities=9% Similarity=-0.074 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
..|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..++++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al------------------- 257 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL------------------- 257 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------------------
Confidence 4555555666666666666666666666666666666666666666666666666666654
Q ss_pred eeeccccCCCchHHHHHHHHHHHHcccCCCC
Q 007808 545 MLGCLSRELDRKSIVRAEANMIKLLPQNNHP 575 (589)
Q Consensus 545 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 575 (589)
+++|+++.++..++.++..+|+..++
T Consensus 258 -----~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 258 -----QLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -----HHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666665544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.3e-09 Score=91.87 Aligned_cols=116 Identities=8% Similarity=0.055 Sum_probs=70.5
Q ss_pred ccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH-HhcCCCH--HH
Q 007808 408 HMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGS-CRVYKNV--EL 482 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~~ 482 (589)
..|++++|...+++.... .+.+...|..+...|...|++++|+..++++ ...| +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345566666666655442 1234455666666666666666666666665 2222 44555555555 5566776 77
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 483 AELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|...++++++.+|+++.++..++.+|...|++++|+..++++.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.7e-10 Score=91.82 Aligned_cols=99 Identities=10% Similarity=-0.013 Sum_probs=89.5
Q ss_pred CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcccee
Q 007808 460 IEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSI 538 (589)
Q Consensus 460 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 538 (589)
..| +...+..+...+...|++++|+..|+++++++|+++..+..++.+|...|++++|++.++++.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------- 82 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA------------- 82 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------------
Confidence 445 345667777889999999999999999999999999999999999999999999999999986
Q ss_pred eeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 539 EVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 539 ~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+++|+++.++..+|.+|..+|+.++|+..+...
T Consensus 83 -----------~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 83 -----------VMDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp -----------HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 789999999999999999999999998877654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-09 Score=81.36 Aligned_cols=100 Identities=9% Similarity=-0.025 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+...+..+...+...|++++|++.|+++++++|+++.++..++.+|.+.|++++|++.+++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----------------- 65 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL----------------- 65 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----------------
Confidence 456777888999999999999999999999999999999999999999999999999999986
Q ss_pred eeeeeccccCCCc------hHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 543 VVMLGCLSRELDR------KSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 543 ~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
+++|++ +.++..++.++..+|+.+.++..+..+-+.|
T Consensus 66 -------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 108 (111)
T 2l6j_A 66 -------RYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGY 108 (111)
T ss_dssp -------TSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCSSSS
T ss_pred -------HhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhHHHh
Confidence 788998 8999999999999999999999887776655
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-08 Score=93.06 Aligned_cols=163 Identities=8% Similarity=-0.041 Sum_probs=122.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC--CC--hH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDG-----ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIV--PQ--IE 433 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~--~~ 433 (589)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++++....... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3445667788899999999999888875322111 123445566778899999999998886432111 11 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC------CC
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRMP----IEAD-----AVIWANLLGSCRVYKNVELAELALERLTELEPK------NP 498 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~ 498 (589)
+++.++..|...|++++|+..++++. ..|+ ..++..+...|...|++++|+..+++++++.+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78889999999999999999998762 2222 257788889999999999999999999986432 14
Q ss_pred cchHHHHHHHhhcCChHHH-HHHHHHhh
Q 007808 499 ANFVMLSNIYGDLGRWKDV-ARIKVAMR 525 (589)
Q Consensus 499 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 525 (589)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788999999999999999 77787764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-08 Score=89.83 Aligned_cols=179 Identities=10% Similarity=-0.033 Sum_probs=118.4
Q ss_pred hcCChHHHHHHHhhCCC--C-CcchHHHH-------HHHHHhCCChHHHHHHHHHHHHCCCCCCH---------------
Q 007808 342 KCGIIENAVDVFNSMDT--K-DLITWNTI-------ISGLAMHGRGAGALSLFHEMKNAGEMPDG--------------- 396 (589)
Q Consensus 342 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--------------- 396 (589)
..++...|.+.|.++.. | ....|..+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 35566666666665542 2 33455555 3444444555555555554443 23321
Q ss_pred -------hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCH----H
Q 007808 397 -------ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADA----V 465 (589)
Q Consensus 397 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 465 (589)
.....+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223456667788889999888887753 2354435556667888889999999988877433433 3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccC--CC-CCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELE--PK-NPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56667788888999999999999887533 43 34577888888999999999999998886
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.3e-09 Score=88.62 Aligned_cols=89 Identities=8% Similarity=-0.019 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCe
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEV 543 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (589)
...|..+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..+++..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al------------------ 124 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL------------------ 124 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH------------------
Confidence 35677888999999999999999999999999999999999999999999999999999986
Q ss_pred eeeeccccCCCch-HHHHHHHHHHHHcccCCCCc
Q 007808 544 VMLGCLSRELDRK-SIVRAEANMIKLLPQNNHPL 576 (589)
Q Consensus 544 ~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~~ 576 (589)
+++|+++ .+...|+.+...+++..+..
T Consensus 125 ------~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 125 ------RNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp ------HHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ------hcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999 88889999988877665544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=81.61 Aligned_cols=93 Identities=8% Similarity=-0.036 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc-------chHH
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA-------NFVM 503 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 503 (589)
..+..++..+.+.|++++|++.|+++ .+.| +...|..+..+|...|++++|++.++++++++|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45677889999999999999999987 4455 5778888999999999999999999999999987654 5677
Q ss_pred HHHHHhhcCChHHHHHHHHHhh
Q 007808 504 LSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 504 l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++.++...|++++|++.+++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 8888999999999999999885
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=9.1e-09 Score=83.74 Aligned_cols=116 Identities=16% Similarity=0.039 Sum_probs=94.4
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHH
Q 007808 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
.+...+..+...+...|++++|+..|++. ...| +...+..+..++...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677788888888888888888888876 3334 567788888889999999999999999999999999999999999
Q ss_pred HhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCC-----chHHHHHHHHHHHHc
Q 007808 508 YGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELD-----RKSIVRAEANMIKLL 569 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~ 569 (589)
|...|++++|+..++++. +++|+ ++.+...+..+..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~------------------------~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY------------------------SLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH------------------------HHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH------------------------HHChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999885 44444 677777777666544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.83 E-value=3.7e-08 Score=83.04 Aligned_cols=130 Identities=11% Similarity=-0.051 Sum_probs=104.8
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.... .+.+...+..++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 4567888889999999999999999998852 336778888999999999999999999999764 2345778889999
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHH--HHHHhcCCCHHHHHHHHHHHHcc
Q 007808 441 LLARAGRLAEAVDFVKRM-PIEA-DAVIWANL--LGSCRVYKNVELAELALERLTEL 493 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 493 (589)
+|...|++++|.+.++++ ...| +...+..+ ...+...|++++|...+++..++
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999987 3334 44445333 34477889999999999887663
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.83 E-value=2.6e-06 Score=85.29 Aligned_cols=365 Identities=14% Similarity=0.032 Sum_probs=196.9
Q ss_pred CC-ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCC-hHHHH
Q 007808 78 NE-FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKA-IEAAY 155 (589)
Q Consensus 78 ~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~ 155 (589)
.| ++..|..+|+.+... -|. ++.+.+.++|++.+.. .|+...|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 366777777776643 232 7888888888888774 3577777777766655543 23334
Q ss_pred HHHccCCC------CCeehHHHHHHHHH----hCCCHHHHHHHHHhCCCC---Ch-hHHHHHHHHHhcCCChHHHHHHhc
Q 007808 156 KVFGEMDE------RNVVVWTSMINGYI----SCGDIVSARCLFELAPER---DV-ILWNTIVSGYIDVRNMIEARKLFD 221 (589)
Q Consensus 156 ~~~~~~~~------~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~---~~-~~~~~l~~~~~~~g~~~~a~~~~~ 221 (589)
.+|+.... .+...|...+..+. .+|+.+.+.++|++.... +. ..|...... ........+.+++.
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHH
Confidence 44443221 23345555554432 234455566666555331 11 111111111 11111111222211
Q ss_pred ccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCchhHHHHHHHHHhCC--C-----hHHHHHHHHHHHHcCC
Q 007808 222 QMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE----RNVFSWNGLIGGYANNG--L-----FFEVLDAFKRMLTEGR 290 (589)
Q Consensus 222 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~ 290 (589)
+ . .+.+..|..+++.+.. .+...|...+.--...+ - .+.+..+|++++...
T Consensus 148 ~---------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~- 209 (493)
T 2uy1_A 148 D---------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF- 209 (493)
T ss_dssp H---------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred H---------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-
Confidence 1 0 0122223333322221 13345555544322221 1 345677899888864
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH-HHHHhhCC--C-------C-
Q 007808 291 VFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENA-VDVFNSMD--T-------K- 359 (589)
Q Consensus 291 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~--~-------~- 359 (589)
+.+...|...+.-+.+.|+.+.|..+++++... |.+...+.. |+...+.++. ..+.+... . +
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 445667777777788889999999999999988 444443332 2221111111 12222211 0 0
Q ss_pred --CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc-cCcHHHHHHHHHHhHHhcCCCCChHHHH
Q 007808 360 --DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTH-MGLVEEGLSYFQSMAMDYSIVPQIEHYG 436 (589)
Q Consensus 360 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 436 (589)
....|...+..+.+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+...+.++ .++..+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHH
Confidence 1235666666666677888888888888 32 11233334322222122 2368888888888877543 2344566
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 437 CMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
..++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777788888888888888883 2466677777666677888888888888775
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-08 Score=81.00 Aligned_cols=91 Identities=19% Similarity=0.022 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
+..+...+.+.|++++|+..++++ ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.+|.+.|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 455677888999999999999988 3445 67788888899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHhh
Q 007808 513 RWKDVARIKVAMR 525 (589)
Q Consensus 513 ~~~~A~~~~~~~~ 525 (589)
++++|+..+++..
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999985
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.8e-09 Score=86.68 Aligned_cols=108 Identities=15% Similarity=0.068 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CCCCC-------------HHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-------C
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRM-PIEAD-------------AVIWANLLGSCRVYKNVELAELALERLTEL-------E 494 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~ 494 (589)
......+.+.|++++|++.|++. .+.|+ ...|..+..++.+.|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33445555555666665555554 22222 237888889999999999999999999999 9
Q ss_pred CCCCcch----HHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 495 PKNPANF----VMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 495 p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
|++..+| +..+.++...|++++|+..|++.. +++|+++++...+..+-.
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl------------------------el~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV------------------------EMIEERKGETPGKERMME 147 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHCCSCCTTHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH------------------------hcCCCcHHHHHHHHHHHH
Confidence 9999999 999999999999999999999986 677777777666665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.80 E-value=8.4e-09 Score=95.60 Aligned_cols=188 Identities=8% Similarity=-0.081 Sum_probs=117.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCA 405 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~ 405 (589)
...+..+...+...|++++|...|++.. ..+...|..+..+|.+.|++++|+..+++..+. .| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445556666666666666666666554 225566677777777778888888888777764 34 45667777777
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHH
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVP---QIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVEL 482 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 482 (589)
+...|++++|...|+++.....-.+ ....+..+ ...+...+.. .......++......+.. + ..|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 8888888888888877654211111 11112111 1112211211 122222333333333322 2 2689999
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHHHhhc-CChHHHHHHHHHhhhC
Q 007808 483 AELALERLTELEPKNPANFVMLSNIYGDL-GRWKDVARIKVAMRDT 527 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 527 (589)
|.+.++++++.+|++......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999998888888888888876 7799999999988653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.9e-08 Score=92.81 Aligned_cols=163 Identities=6% Similarity=-0.097 Sum_probs=123.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHHHHHhcCCHHHHHHHHhhC----CCCCC----HHHHH
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIE----HYGCMVDLLARAGRLAEAVDFVKRM----PIEAD----AVIWA 468 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~ 468 (589)
..+..+...|++++|..++++........|+.. .+..+...+...|++++|+..++++ ...++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677889999999999999876433344422 3445777888889999999999886 11223 34688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHcc-------CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeC
Q 007808 469 NLLGSCRVYKNVELAELALERLTEL-------EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN 541 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 541 (589)
.+...|...|++++|+..|+++++. .|....++..++.+|.+.|++++|++.+++..+....
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~----------- 228 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR----------- 228 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------
Confidence 8889999999999999999999952 2223458899999999999999999999988521100
Q ss_pred CeeeeeccccCCCchHHHHHHHHHHHHcccC-CCCcchHhh
Q 007808 542 EVVMLGCLSRELDRKSIVRAEANMIKLLPQN-NHPLTFIVV 581 (589)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 581 (589)
....+.-+.++..+|.+|..+|+. ++|+.+...
T Consensus 229 -------~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 229 -------INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp -------TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred -------cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 023345588999999999999975 778776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=6.1e-09 Score=82.56 Aligned_cols=93 Identities=15% Similarity=-0.038 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeee
Q 007808 467 WANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVML 546 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (589)
+..+...+.+.|++++|+..++++++.+|+++.++..++.++.+.|++++|+..+++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al--------------------- 78 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR--------------------- 78 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------
Confidence 44566778899999999999999999999999999999999999999999999999986
Q ss_pred eccccCCCchHHHHHHHHHHHHcccCCCCcchHhhhh
Q 007808 547 GCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIF 583 (589)
Q Consensus 547 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 583 (589)
+++|+++.++..||.+|...|+.++|+..+....
T Consensus 79 ---~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 79 ---MLDPKDIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp ---HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8999999999999999999999999988776543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.1e-08 Score=79.14 Aligned_cols=117 Identities=7% Similarity=-0.039 Sum_probs=89.9
Q ss_pred CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 007808 395 DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLG 472 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 472 (589)
+...+..+...+...|++++|...++++... .+.+...+..+..+|...|++++|++.++++ ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445666777777777777777777777532 2234666777777788888888888887776 2233 5677888888
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
++...|++++|.+.++++++++|.+...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 89999999999999999999999989999999999887764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.1e-09 Score=82.67 Aligned_cols=95 Identities=7% Similarity=-0.084 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCe
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEV 543 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (589)
...+..+...+.+.|++++|+..|+++++++|+++.++..++.+|.+.|++++|+..+++..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al------------------ 65 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI------------------ 65 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH------------------
Confidence 45677778889999999999999999999999999999999999999999999999999986
Q ss_pred eeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 544 VMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 544 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+++|+++.++..+|.+|..+|+.++|+..+...
T Consensus 66 ------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 66 ------EKDPNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp ------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------HhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 789999999999999999999999888776643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=7.8e-09 Score=84.80 Aligned_cols=105 Identities=10% Similarity=-0.032 Sum_probs=90.1
Q ss_pred HHhhC-CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCcc
Q 007808 454 FVKRM-PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKK 531 (589)
Q Consensus 454 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 531 (589)
.|+++ ...|+ ...+..+...+.+.|++++|+..|+++++.+|+++..+..++.+|.+.|++++|+..++++.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------ 79 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGA------ 79 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH------
Confidence 34444 34553 45566677888999999999999999999999999999999999999999999999999986
Q ss_pred CCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 532 LPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+++|+++.++..+|.+|..+|+.++|+..+...
T Consensus 80 ------------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 80 ------------------LMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp ------------------HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------------------hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 789999999999999999999999988877643
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.79 E-value=5.5e-08 Score=77.27 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=92.2
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHH
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-P-IEADAVIWANLLGS 473 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 473 (589)
...+..+...+...|++++|.+.++++... .+.+...+..++..+.+.|++++|+..++++ . .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456677777788888888888888887653 2345667778888888888888888888877 2 23466778888889
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC
Q 007808 474 CRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG 512 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 512 (589)
+...|++++|...++++++..|+++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999888887654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=4.9e-08 Score=78.34 Aligned_cols=119 Identities=12% Similarity=0.001 Sum_probs=96.2
Q ss_pred CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHH
Q 007808 395 DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLG 472 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 472 (589)
+...+..+...+...|++++|...++++... .+.+...+..++..+...|++++|++.+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3445667777788888888888888887653 2335677778888888889999998888877 2333 5677888888
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK 515 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 515 (589)
.+...|++++|...+++++++.|+++..+..++.++.+.|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999888763
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.8e-08 Score=79.02 Aligned_cols=110 Identities=12% Similarity=0.073 Sum_probs=87.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CCCCC-H---HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC---CcchHHHHHHH
Q 007808 437 CMVDLLARAGRLAEAVDFVKRM-PIEAD-A---VIWANLLGSCRVYKNVELAELALERLTELEPKN---PANFVMLSNIY 508 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~ 508 (589)
.+...+...|++++|++.|+++ ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 4566777888888888888776 22333 2 466677788889999999999999999999998 66789999999
Q ss_pred hhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 509 GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
...|++++|+..++++. +..|+++.+......+..-.+
T Consensus 87 ~~~g~~~~A~~~~~~~~------------------------~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVA------------------------TQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHTTCHHHHHHHHHHHH------------------------HHSTTSHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHH------------------------HHCCCChHHHHHHHHHHHHHh
Confidence 99999999999999886 678888888888777764443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.75 E-value=6e-08 Score=92.35 Aligned_cols=128 Identities=10% Similarity=0.057 Sum_probs=97.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCC-------------ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP-------------QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA- 462 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 462 (589)
.+..+...+.+.|++++|...|++++......+ ....|..+..+|.+.|++++|+..++++ ...|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344444445555555555555555443211000 1467888999999999999999999987 3344
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH-HHHHHhh
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA-RIKVAMR 525 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 525 (589)
+...+..+..+|...|++++|+..|+++++++|+++.++..++.++.+.|++++|. ..+++|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999999999999999999999999999999999994 4666663
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.1e-09 Score=83.40 Aligned_cols=92 Identities=11% Similarity=0.129 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
..+..++..+.+.|++++|++.|+++++++|+++.+|..++.+|.+.|++++|++.+++..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al------------------- 69 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV------------------- 69 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH-------------------
Confidence 4567788999999999999999999999999999999999999999999999999999985
Q ss_pred eeeccccCCCc-------hHHHHHHHHHHHHcccCCCCcchHh
Q 007808 545 MLGCLSRELDR-------KSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 545 ~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
+++|++ +.++..+|.+|..+|+..+|+.+..
T Consensus 70 -----~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 70 -----EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp -----HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333333 4588889999999999988887654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.9e-09 Score=80.89 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=82.9
Q ss_pred hcCCHHHHHHHHhhC-CC---CC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH
Q 007808 444 RAGRLAEAVDFVKRM-PI---EA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
..|++++|+..|+++ .. .| +...+..+..++...|++++|+..++++++++|+++.++..++.++.+.|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888888877 33 24 34567778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 519 RIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
..+++.. +.+|+++.+......+..-.+..
T Consensus 82 ~~~~~al------------------------~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 82 ELLLKII------------------------AETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHH------------------------HHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHHHHH------------------------HhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999885 67888888887776666554444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.3e-08 Score=89.67 Aligned_cols=165 Identities=6% Similarity=-0.097 Sum_probs=123.4
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHhhC-C-----CCCC--HH
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI----EHYGCMVDLLARAGRLAEAVDFVKRM-P-----IEAD--AV 465 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~p~--~~ 465 (589)
.+...+..+...|++++|.+.+++........++. ..+..+...+...|++++|+..++++ . ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44556677889999999999998886642222211 23445667788899999999998876 2 1222 45
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHc---cCCCCC----cchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcccee
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTE---LEPKNP----ANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSI 538 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 538 (589)
+++.+...|...|++++|...++++++ ..|+++ .++..++.+|.+.|++++|+.++++..+.. +..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~--~~~----- 229 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS--CRI----- 229 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHT-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH--Hhc-----
Confidence 788888999999999999999999994 455533 588999999999999999999999985321 000
Q ss_pred eeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCC-cchHh
Q 007808 539 EVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHP-LTFIV 580 (589)
Q Consensus 539 ~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 580 (589)
...+..+.++..+|.+|..+|+.++| ..+..
T Consensus 230 -----------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 230 -----------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp -----------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred -----------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 12334588899999999999999888 55443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-08 Score=78.74 Aligned_cols=116 Identities=9% Similarity=0.068 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC-------CcchH
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPKN-------PANFV 502 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~ 502 (589)
...+..++..+...|++++|+..++++ .. +.+...+..+...+...|++++|...++++++..|.+ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677788888888899888888877 22 3366778888888999999999999999999988776 77899
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 503 MLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 503 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
.++.++...|++++|.+.++++. +..| ++.....++.++..+++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~------------------------~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSL------------------------AEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------------------------HHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHH------------------------HhCC-CHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999986 5667 588899999998877665
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=4.3e-08 Score=90.81 Aligned_cols=176 Identities=8% Similarity=-0.047 Sum_probs=100.1
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMV 439 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 439 (589)
...+..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...++++++ ..+.+...+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 345566666677777777777777777663 34 555666666677777777777777776653 1222355666667
Q ss_pred HHHHhcCCHHHHHHHHhhC-CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHH
Q 007808 440 DLLARAGRLAEAVDFVKRM-PIEADA-VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 517 (589)
.+|...|++++|+..|+++ ...|+. ..+...+.... ...++...........|.++.....++..+ .|++++|
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 7777777777777776665 222211 00111111111 111122222222334555555555555543 5666666
Q ss_pred HHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 518 ARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
++.+++. ++++|++......++.++.+.
T Consensus 155 ~~~~~~a------------------------l~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 155 LEECQRN------------------------HEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp HTTTSGG------------------------GTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHHHhh------------------------hccccchhhhhhHHHHHHHHH
Confidence 6665554 378898888888887777665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-08 Score=99.06 Aligned_cols=129 Identities=11% Similarity=0.056 Sum_probs=72.5
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-------------hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-------------IEHYGCMVDLLARAGRLAEAVDFVKRM-PIE 461 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 461 (589)
...+..+...+.+.|++++|...|++++......++ ...|..+..+|.+.|++++|+..++++ .+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 345666667777777777777777777653221111 345555566666666666666666555 222
Q ss_pred C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHH-HHHHh
Q 007808 462 A-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVAR-IKVAM 524 (589)
Q Consensus 462 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 524 (589)
| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.+.|++++|.+ .+++|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 445555555666666666666666666666666666666666666666666655543 33444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.9e-08 Score=84.82 Aligned_cols=96 Identities=8% Similarity=-0.083 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+...+..+...+...|++++|+..|+++++++|+++.++..++.+|.+.|++++|+..+++..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------- 72 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELAT----------------- 72 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH-----------------
Confidence 456677788899999999999999999999999999999999999999999999999999986
Q ss_pred eeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 543 VVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+++|+++.++..+|.+|..+|+.++|+..+...
T Consensus 73 -------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 73 -------VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp -------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 789999999999999999999998888876643
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.6e-08 Score=80.09 Aligned_cols=97 Identities=6% Similarity=-0.133 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeC
Q 007808 462 ADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN 541 (589)
Q Consensus 462 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 541 (589)
.+...+..+...+...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+++..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---------------- 70 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---------------- 70 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------------
Confidence 4677888889999999999999999999999999999999999999999999999999999986
Q ss_pred CeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 542 EVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+++|+++.++..+|.+|..+|+.++|+......
T Consensus 71 --------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 71 --------ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp --------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------HhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788999999999999999999998888776644
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-06 Score=82.19 Aligned_cols=175 Identities=11% Similarity=0.036 Sum_probs=141.3
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccC-cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-C
Q 007808 370 GLAMHGRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMG-LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA-G 446 (589)
Q Consensus 370 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g 446 (589)
.....+..++|++++++++.. .|+ ...|+.-...+...| .+++++++++.++. ..+.+..+|+.-..++.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcC
Confidence 344556668899999999984 564 455666666666777 59999999999986 3345677788777777776 6
Q ss_pred -CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHccCCCCCcchHHHHHHHhhcCC--
Q 007808 447 -RLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVE--------LAELALERLTELEPKNPANFVMLSNIYGDLGR-- 513 (589)
Q Consensus 447 -~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-- 513 (589)
++++++++++++ ...| +...|+.-...+.+.|.++ ++++.++++++.+|.|..+|...+.++.+.|+
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 889999999988 4445 7788887776666666555 99999999999999999999999999999987
Q ss_pred -----hHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 514 -----WKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 514 -----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
++++++.++++. .++|+|.+++..+.+++...|+.
T Consensus 219 ~~~~~~~eELe~~~~aI------------------------~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSI------------------------HLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCHHHHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHHH------------------------HhCCCCHHHHHHHHHHHHhcCCC
Confidence 688888888875 79999999999999999988876
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.8e-08 Score=93.53 Aligned_cols=89 Identities=9% Similarity=-0.008 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+...|..+..+|.+.|++++|++.++++++++|+++.++..++.+|...|++++|++.++++.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al----------------- 334 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ----------------- 334 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH-----------------
Confidence 356777888889999999999999999999999999999999999999999999999999886
Q ss_pred eeeeeccccCCCchHHHHHHHHHHHHcccCCCC
Q 007808 543 VVMLGCLSRELDRKSIVRAEANMIKLLPQNNHP 575 (589)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 575 (589)
+++|+++.++..++.++..+++..++
T Consensus 335 -------~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 335 -------EIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp -------HHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------HhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999988876554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.1e-08 Score=87.47 Aligned_cols=138 Identities=14% Similarity=-0.055 Sum_probs=104.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC--hHHHHHHHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ--IEHYGCMVDL 441 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~ 441 (589)
+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344667788899999999999888764 465445556666788999999999999866431 1 111 2367778999
Q ss_pred HHhcCCHHHHHHHHhhCC---CCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHH
Q 007808 442 LARAGRLAEAVDFVKRMP---IEAD--AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSN 506 (589)
Q Consensus 442 ~~~~g~~~~A~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 506 (589)
+.+.|++++|+..|++.. ..|. .........++.+.|+.++|...|+++...+|+ +.+...|.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999999882 2143 345666778899999999999999999999998 655555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-07 Score=93.19 Aligned_cols=172 Identities=12% Similarity=0.028 Sum_probs=141.1
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhccCc----------HHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007808 375 GRGAGALSLFHEMKNAGEMPD-GITFIGILCACTHMGL----------VEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLA 443 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 443 (589)
...++|++.++++... .|+ ...|+.-..++...|+ ++++++.++.+.+. .+-+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3456789999999984 564 4556665556666666 89999999999863 3456778888888888
Q ss_pred hcC--CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCCCCCcchHHHHHHHhhc-------
Q 007808 444 RAG--RLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYK-NVELAELALERLTELEPKNPANFVMLSNIYGDL------- 511 (589)
Q Consensus 444 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 511 (589)
+.| ++++++++++++ ...| +...|+.-...+.+.| .++++.+.++++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 779999999998 3344 7888998888888888 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCC
Q 007808 512 -------GRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 512 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 574 (589)
+++++++++++++. .++|++.+++..+++++...++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai------------------------~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAF------------------------FTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHH------------------------HHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHH------------------------hhCCCCccHHHHHHHHHhcCCCccc
Confidence 55788888887775 7899999999999999998887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.8e-07 Score=83.51 Aligned_cols=234 Identities=11% Similarity=0.049 Sum_probs=155.7
Q ss_pred cCChHHHHHHHhhCCC---CCcchHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcc-C-cHHHH
Q 007808 343 CGIIENAVDVFNSMDT---KDLITWNTIISGLAMHG-RGAGALSLFHEMKNAGEMP-DGITFIGILCACTHM-G-LVEEG 415 (589)
Q Consensus 343 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~-g-~~~~A 415 (589)
.+..++|+++++.+.. .+..+|+.-...+...| .+++++++++.+... .| +...|+.-...+... + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3445567777766652 24456666666666667 588888888888874 44 555666655555555 5 77888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH--------HHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCC------
Q 007808 416 LSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA--------EAVDFVKRM-PIEA-DAVIWANLLGSCRVYKN------ 479 (589)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~------ 479 (589)
+++++++.. ..+.+...|+.-..++.+.|.++ +++++++++ ...| |...|+.....+.+.+.
T Consensus 145 L~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 888888874 33445667776555565555555 888888877 3344 77888888888877776
Q ss_pred -HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeC-Ceeeee---------c
Q 007808 480 -VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVN-EVVMLG---------C 548 (589)
Q Consensus 480 -~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---------~ 548 (589)
++++++.+++++.++|.|..++..+..++.+.|+-..- ++.. +.|..+. .+... ..+.++ .
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~--~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVP--ILPA-----ILPYTAS-KLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGG--GHHH-----HGGGTC---------------CCCCC-CCC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccc--cccc-----ccccccc-cccccchhHHHHHHHHHhcccc
Confidence 78999999999999999999999999999888874110 0000 0000000 00000 000111 0
Q ss_pred cccCCCchHHHHHHHHHHHHcccCCCCcchHhhhhhcccC
Q 007808 549 LSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTFAS 588 (589)
Q Consensus 549 ~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (589)
...++..+.++..|+.+|.+.|+..+|++....|....|-
T Consensus 295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dp 334 (349)
T 3q7a_A 295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQ 334 (349)
T ss_dssp SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG
T ss_pred cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhCh
Confidence 1334788999999999999999888899988888766653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=73.56 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC--CCcchHHHHHH
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKNVELAELALERLTELEPK--NPANFVMLSNI 507 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 507 (589)
...+..++..+.+.|++++|+..++++ .. +.+...+..+...+...|++++|.+.++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445566777777788888888877776 22 335667777778888888999999999999988888 88888889999
Q ss_pred Hhhc-CChHHHHHHHHHhh
Q 007808 508 YGDL-GRWKDVARIKVAMR 525 (589)
Q Consensus 508 ~~~~-g~~~~A~~~~~~~~ 525 (589)
+.+. |++++|++.++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHG
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 9999 99999999888885
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.6e-08 Score=76.67 Aligned_cols=100 Identities=11% Similarity=0.016 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+...+..+...+...|++++|...+++++++.|.++..+..++.++...|++++|++.+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~----------------- 67 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI----------------- 67 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-----------------
Confidence 345566778889999999999999999999999999999999999999999999999999986
Q ss_pred eeeeeccccCCC--chHHHHHHHHHHHHc-ccCCCCcchHhhhhhcc
Q 007808 543 VVMLGCLSRELD--RKSIVRAEANMIKLL-PQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 543 ~~~~~~~~~~p~--~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 586 (589)
+.+|+ ++.++..++.+|..+ |+.++|+.++..+....
T Consensus 68 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 68 -------NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp -------HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred -------HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 67889 999999999999999 99999998887766543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.63 E-value=6.4e-08 Score=96.83 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=89.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK 515 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 515 (589)
+...+.+.|++++|++.++++ ...| +...+..+..++.+.|++++|++.++++++++|+++.++..++.+|.+.|+++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 344566777777777777776 3344 46777777788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHH--HHHcccCCCCcchHh
Q 007808 516 DVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANM--IKLLPQNNHPLTFIV 580 (589)
Q Consensus 516 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~~~~~~~~~~ 580 (589)
+|++.++++. +++|+++.++..++.+ +...|+.++|+....
T Consensus 92 eA~~~~~~al------------------------~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVV------------------------KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH------------------------HHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHH------------------------HhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888875 6778888888888887 777788888877654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=3.8e-07 Score=71.44 Aligned_cols=111 Identities=13% Similarity=0.022 Sum_probs=82.7
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHH
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGS 473 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 473 (589)
...+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|...++++ ...| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566667777778888888887777653 2235666777778888888888888888776 2333 56677778888
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 474 CRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
+...|++++|.+.++++++.+|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88999999999999999999998887777776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-07 Score=79.43 Aligned_cols=127 Identities=9% Similarity=0.055 Sum_probs=101.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH-HHhcCCH--
Q 007808 372 AMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL-LARAGRL-- 448 (589)
Q Consensus 372 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 448 (589)
...|++++|+..+++..+.. +.+...+..+...|...|++++|...|+++.... +.+...+..+..+ |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45688899999999988752 3466788889999999999999999999987642 3456778888888 7889998
Q ss_pred HHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcch
Q 007808 449 AEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANF 501 (589)
Q Consensus 449 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 501 (589)
++|+..++++ ...| +...+..+...+...|++++|...+++++++.|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999987 3344 567788888999999999999999999999999976533
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=70.44 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCe
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEV 543 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (589)
...+..+...+...|++++|+..++++++.+|+++..+..++.++.+.|++++|++.+++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~------------------ 70 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL------------------ 70 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH------------------
Confidence 45677777888999999999999999999999999999999999999999999999999886
Q ss_pred eeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 544 VMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 544 ~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
+++|+++.++..++.++...|
T Consensus 71 ------~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 71 ------ELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ------HHCTTCHHHHHHHHHHHHHHC
T ss_pred ------hcCCCCHHHHHHHHHHHHhcC
Confidence 688999999999999987765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.6e-07 Score=78.15 Aligned_cols=152 Identities=10% Similarity=-0.042 Sum_probs=89.2
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhc---CCCC-ChHHHHHHHHHHHhcCCH
Q 007808 373 MHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDY---SIVP-QIEHYGCMVDLLARAGRL 448 (589)
Q Consensus 373 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 448 (589)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..... +..| ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644433321 11234456666666666777777777666654411 1111 134566666777777777
Q ss_pred HHHHHHHhhCC----CCC-C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC--C----CcchHHHHHHHhhcCC
Q 007808 449 AEAVDFVKRMP----IEA-D----AVIWANLLGSCRVYKNVELAELALERLTELEPK--N----PANFVMLSNIYGDLGR 513 (589)
Q Consensus 449 ~~A~~~~~~~~----~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~ 513 (589)
++|++.+++.. ..+ + ...+..+...+...|++++|...+++++++.+. + ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 77777766551 112 2 234555667777778888888888887764321 1 1234677888888888
Q ss_pred hHHHHHHHHHhh
Q 007808 514 WKDVARIKVAMR 525 (589)
Q Consensus 514 ~~~A~~~~~~~~ 525 (589)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.6e-06 Score=76.13 Aligned_cols=193 Identities=14% Similarity=0.083 Sum_probs=119.8
Q ss_pred HHHHHHHhhCC---CCCcchHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCc-HHHHHHHHH
Q 007808 347 ENAVDVFNSMD---TKDLITWNTIISGLAMHG--RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGL-VEEGLSYFQ 420 (589)
Q Consensus 347 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~ 420 (589)
++++.+++.+. ..+..+|+.-..++...+ .+++++++++++.+.. +-|...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444443 234455555555555555 3667777777777642 2255555555555555565 467777777
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcC-------
Q 007808 421 SMAMDYSIVPQIEHYGCMVDLLARA--------------GRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVY------- 477 (589)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------- 477 (589)
+++.. .+-|...|+....++.+. +.++++++.++++ ...| |...|+.+-..+.+.
T Consensus 170 ~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 76653 234455666555554443 4467777777766 2344 566666555554444
Q ss_pred ----CCHHHHHHHHHHHHccCCCCCcchHHHHHHH---hhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccc
Q 007808 478 ----KNVELAELALERLTELEPKNPANFVMLSNIY---GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLS 550 (589)
Q Consensus 478 ----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (589)
+.++++++.+++++++.|++.-++..++.+. ...|..++....+.++. +
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~------------------------~ 303 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK------------------------A 303 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH------------------------H
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH------------------------H
Confidence 4578999999999999998754444443322 24677888888888886 7
Q ss_pred cCCCchHHHHHHHHHH
Q 007808 551 RELDRKSIVRAEANMI 566 (589)
Q Consensus 551 ~~p~~~~~~~~l~~~~ 566 (589)
+||-..+.|..|+.-+
T Consensus 304 ~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 304 VDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HCGGGHHHHHHHHHHH
T ss_pred hCcchhhHHHHHHHHH
Confidence 8899988888776544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=81.28 Aligned_cols=93 Identities=13% Similarity=0.028 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
..+..+..+|.+.|++++|+..++++ ...| +...+..+..++...|++++|+..|+++++++|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888889999999999988887 3334 677788888999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHhh
Q 007808 511 LGRWKDVA-RIKVAMR 525 (589)
Q Consensus 511 ~g~~~~A~-~~~~~~~ 525 (589)
.|+.+++. ..++.+.
T Consensus 169 ~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHC----------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 99888887 4566664
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.8e-08 Score=93.09 Aligned_cols=133 Identities=14% Similarity=-0.009 Sum_probs=80.1
Q ss_pred HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHh
Q 007808 396 GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCR 475 (589)
Q Consensus 396 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 475 (589)
...+..+...+.+.|++++|...|++++.. .|+... +...|+..++...+. ...|..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 345666677777888888888888877642 243221 223333444433322 135677778888
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCc
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDR 555 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 555 (589)
+.|++++|+..++++++++|+++.++..++.+|...|++++|+..++++. +++|++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al------------------------~l~p~~ 297 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ------------------------KYAPDD 297 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT------------------------C-----
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHCCCC
Confidence 88888888888888888888888888888888888888888888888874 667777
Q ss_pred hHHHHHHHHHHHHc
Q 007808 556 KSIVRAEANMIKLL 569 (589)
Q Consensus 556 ~~~~~~l~~~~~~~ 569 (589)
+.++..|+.+....
T Consensus 298 ~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 298 KAIRRELRALAEQE 311 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777774433
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.5e-07 Score=79.21 Aligned_cols=153 Identities=12% Similarity=0.002 Sum_probs=101.7
Q ss_pred hcCChHHHHH---HHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCC-CHhHHHHHHHHHhccCcHH
Q 007808 342 KCGIIENAVD---VFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKN----AGEMP-DGITFIGILCACTHMGLVE 413 (589)
Q Consensus 342 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~g~~~ 413 (589)
..|++++|.+ .+..........+..+...+...|++++|+..+++..+ .+..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777777 44432223445677777778888888888888877665 11122 2345677777888888988
Q ss_pred HHHHHHHHhHHhcCCCC-C----hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCCH----HHHHHHHHHHhcCCCH
Q 007808 414 EGLSYFQSMAMDYSIVP-Q----IEHYGCMVDLLARAGRLAEAVDFVKRMP----IEADA----VIWANLLGSCRVYKNV 480 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~----~~~~~l~~~~~~~g~~ 480 (589)
+|...+++......-.+ + ...+..+...+...|++++|...+++.. ..++. ..+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887755321122 2 3456778888888999999888887751 11222 3356667788899999
Q ss_pred HHHHHHHHHHHccC
Q 007808 481 ELAELALERLTELE 494 (589)
Q Consensus 481 ~~A~~~~~~~~~~~ 494 (589)
++|.+.+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888743
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.5e-07 Score=73.17 Aligned_cols=113 Identities=15% Similarity=0.018 Sum_probs=83.9
Q ss_pred CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHH
Q 007808 395 DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWA 468 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 468 (589)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|++.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345566666777777777777777777753 3455 566777777888888888888888776 2334 566777
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
.+..++...|++++|...|+++++++|+++..+..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 778888889999999999999999999888777777666544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-07 Score=75.30 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=84.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccCCCCC---cchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 468 ANLLGSCRVYKNVELAELALERLTELEPKNP---ANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
..+...+...|++++|...|+++++..|+++ .++..++.++.+.|++++|+..++++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~------------------- 66 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLV------------------- 66 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-------------------
Confidence 3456778899999999999999999999988 699999999999999999999999986
Q ss_pred eeeccccCCCc---hHHHHHHHHHHHHcccCCCCcchHhhhhhcc
Q 007808 545 MLGCLSRELDR---KSIVRAEANMIKLLPQNNHPLTFIVVIFSTF 586 (589)
Q Consensus 545 ~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 586 (589)
+.+|++ +.++..+|.+|..+|+.++|+..+..+...+
T Consensus 67 -----~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 67 -----SRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp -----HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -----HHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 677888 8889999999999999999998887765443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.54 E-value=8e-08 Score=78.11 Aligned_cols=100 Identities=11% Similarity=-0.019 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC-------c-----chHHHHHHHhhcCChHHHHHHHHHhhhCCCccC
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNP-------A-----NFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 532 (589)
..+......+.+.|++++|+..|+++++++|+++ . +|.+++.++.+.|++++|+..+++..+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l----- 86 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY----- 86 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 3455666778899999999999999999999832 2 8999999999999999999999998621
Q ss_pred CccceeeeCCeeeeeccccCCCchHHH----HHHHHHHHHcccCCCCcchHhh
Q 007808 533 PGCSSIEVNEVVMLGCLSRELDRKSIV----RAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
...+.+++|+++.++ ...|.++..+|+.++|+.....
T Consensus 87 ------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 87 ------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp ------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 001224599999999 9999999999999999876654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.53 E-value=9.5e-06 Score=81.21 Aligned_cols=120 Identities=10% Similarity=-0.099 Sum_probs=62.5
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHhhC--CCCCCHHHHHHHHHHHh
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG-RLAEAVDFVKRM--PIEADAVIWANLLGSCR 475 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 475 (589)
|...+....+.++.+.|..+|+++ +.. ..+...|...+..-...+ +.+.|..+|+.+ ..+.+...|...+....
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 444445454556666677776666 221 123334432222222222 466666666655 11112334444555555
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.|+.+.|..+|+++. .+...+...+..-...|+.+.+.++++++.
T Consensus 366 ~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666766666662 234455555555556677666666665554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-06 Score=87.11 Aligned_cols=129 Identities=4% Similarity=-0.081 Sum_probs=102.6
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----------------HhHHHHHHHHHhccCcHHHHHHHHHHhH
Q 007808 360 DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPD----------------GITFIGILCACTHMGLVEEGLSYFQSMA 423 (589)
Q Consensus 360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 423 (589)
....|..+...|.+.|++++|+..|++..+. .|+ ...|..+..+|.+.|++++|+..+++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3457888899999999999999999999884 343 4788889999999999999999999997
Q ss_pred HhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHH-HHHHHHc
Q 007808 424 MDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAEL-ALERLTE 492 (589)
Q Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 492 (589)
.. .+.+...|..+..+|...|++++|+..|+++ .+.| +...+..+..++.+.++.++|.+ .+++++.
T Consensus 345 ~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 345 GL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 63 2345788899999999999999999999998 5666 44567777788888888887764 4555554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=7.7e-08 Score=78.01 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC-----------ChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeec
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYGDLG-----------RWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGC 548 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (589)
+++|+..|+++++++|++..+|.+++.+|...| ++++|++.|++..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl----------------------- 118 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV----------------------- 118 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHH-----------------------
Confidence 679999999999999999999999999999875 8999999999986
Q ss_pred cccCCCchHHHHHHHHH
Q 007808 549 LSRELDRKSIVRAEANM 565 (589)
Q Consensus 549 ~~~~p~~~~~~~~l~~~ 565 (589)
+++|+++.....+..+
T Consensus 119 -~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 119 -DEQPDNTHYLKSLEMT 134 (158)
T ss_dssp -HHCTTCHHHHHHHHHH
T ss_pred -HhCCCCHHHHHHHHHH
Confidence 7788887776665443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-07 Score=87.73 Aligned_cols=145 Identities=10% Similarity=-0.008 Sum_probs=88.1
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 361 LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 361 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
...+..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345777888888999999999999998873 555432 334455555543321 136788999
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh-hcCChHHH
Q 007808 441 LLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG-DLGRWKDV 517 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 517 (589)
+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|+..|+++++++|+++.++..+..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 3445 67888889999999999999999999999999999999999998844 46677888
Q ss_pred HHHHHHhh
Q 007808 518 ARIKVAMR 525 (589)
Q Consensus 518 ~~~~~~~~ 525 (589)
.+.+++|.
T Consensus 319 ~~~~~~~l 326 (338)
T 2if4_A 319 KEMYKGIF 326 (338)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 88888885
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4.1e-05 Score=71.23 Aligned_cols=231 Identities=11% Similarity=0.055 Sum_probs=146.9
Q ss_pred HhCCChH-HHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCCCChhHHHHHH
Q 007808 270 ANNGLFF-EVLDAFKRMLTEGRVFPNDA-TIVTVLSACARLGA----------LDFSKWVHVYAEYNGYQGNVCVGNALI 337 (589)
Q Consensus 270 ~~~g~~~-~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~ 337 (589)
.+.|.++ +|++++..++..+ |+.. .++.--..+...+. ++++..++..+.... |.+..+++.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n---P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC---chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3445544 6677777777643 4332 23332222222221 456666777766654 55666666666
Q ss_pred HHHHhcC--ChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcc--
Q 007808 338 DMYAKCG--IIENAVDVFNSMD---TKDLITWNTIISGLAMHGR-GAGALSLFHEMKNAGEMPDGITFIGILCACTHM-- 409 (589)
Q Consensus 338 ~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-- 409 (589)
-++...| .+++++.+++.+. ..|..+|+--..++...|. ++++++.++++++.. +-|...|+.....+...
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 6666666 3778888887776 3466677777777777777 588888888888853 33555665555444433
Q ss_pred ------------CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhc-----------CCHHHHHHHHhhC-CCCCCHH
Q 007808 410 ------------GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARA-----------GRLAEAVDFVKRM-PIEADAV 465 (589)
Q Consensus 410 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p~~~ 465 (589)
+.++++++.++..+.. .+-|...|+.+-..+.+. +.++++++.++++ ...||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 5678888888888753 244567777665555555 4578888888887 456654
Q ss_pred HHHHHH-----HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 466 IWANLL-----GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 466 ~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
.|..+. .+....|..++....+.++++++|....-|..+..-+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 333222 2233578889999999999999998666666655443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.6e-08 Score=78.41 Aligned_cols=83 Identities=11% Similarity=0.090 Sum_probs=72.7
Q ss_pred cCCCHHHHHHHHHHHHcc---CCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccC
Q 007808 476 VYKNVELAELALERLTEL---EPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRE 552 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (589)
..|++++|+..|++++++ +|+++.++..++.+|.+.|++++|++.++++. +++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al------------------------~~~ 57 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV------------------------KQF 57 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHC
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhC
Confidence 468999999999999999 58888999999999999999999999999986 789
Q ss_pred CCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 553 LDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 553 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
|+++.++..+|.+|..+|+.++|+..+...
T Consensus 58 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 58 PNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999998876644
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-07 Score=78.46 Aligned_cols=94 Identities=13% Similarity=0.014 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHcc------------------CCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 464 AVIWANLLGSCRVYKNVELAELALERLTEL------------------EPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 464 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
...+......+.+.|++++|+..|++++++ +|.+..+|..++.+|.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777888899999999999999887 66667899999999999999999999999986
Q ss_pred hCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhh
Q 007808 526 DTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
+++|+++.++..+|.+|..+|+.++|+..+..
T Consensus 91 ------------------------~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 91 ------------------------KREETNEKALFRRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp ------------------------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 78999999999999999999999998877654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.39 E-value=5.2e-07 Score=90.23 Aligned_cols=120 Identities=8% Similarity=-0.027 Sum_probs=94.2
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCC
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKN 479 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 479 (589)
+...+.+.|++++|.+.++++.+. .+.+...|..+..+|.+.|++++|++.++++ ...| +...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344566778888888888888753 2234777888888899999999999888887 3445 56778888899999999
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHH--HhhcCChHHHHHHHHH
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNI--YGDLGRWKDVARIKVA 523 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 523 (589)
+++|++.|+++++++|+++.++..++.+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999888 8889999999999884
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.38 E-value=7.5e-07 Score=71.25 Aligned_cols=110 Identities=7% Similarity=-0.049 Sum_probs=67.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC----CCC----HHHHH
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI----EAD----AVIWA 468 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 468 (589)
.+..+...+...|++++|...++++... .+.+...+..++..|...|++++|...++++ .. .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3445555555666666666666665442 1234455556666666666666666666655 11 122 55666
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 469 NLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
.+..++...|++++|.+.++++++..|+ +.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 6777788888888888888888888774 6666666655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.1e-06 Score=83.91 Aligned_cols=162 Identities=5% Similarity=-0.146 Sum_probs=111.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHh----HHHHHHHHHhccCcHHHHHHHHHHhHHh---cCCCCC-hHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNA-GEMPDGI----TFIGILCACTHMGLVEEGLSYFQSMAMD---YSIVPQ-IEH 434 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~ 434 (589)
+..++..|...|++++|.+.+.++... +..++.. ..+.+...+...|+++.|..+++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 556777888888888888888776542 1112221 2233334455678888888888776442 122222 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC-------CCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---CC----Cc
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRMP-------IEA-DAVIWANLLGSCRVYKNVELAELALERLTELEP---KN----PA 499 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~----~~ 499 (589)
+..++..|...|++++|..+++++. ..| ....+..++..|...|++++|..++++++.+.| ++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7788899999999999998888751 122 235677777889999999999999999887542 21 23
Q ss_pred chHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 500 NFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 500 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
.+..++.++...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56677788888899999988877764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-06 Score=86.43 Aligned_cols=158 Identities=9% Similarity=-0.011 Sum_probs=117.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH----------------hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC
Q 007808 368 ISGLAMHGRGAGALSLFHEMKNAGEMPDG----------------ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ 431 (589)
Q Consensus 368 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 431 (589)
...+.+.|++++|++.|.++.+....... ..+..++..|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34466778888888888888774322111 23677889999999999999999988664333333
Q ss_pred h----HHHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-----
Q 007808 432 I----EHYGCMVDLLARAGRLAEAVDFVKRM-------PIEAD-AVIWANLLGSCRVYKNVELAELALERLTELE----- 494 (589)
Q Consensus 432 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 494 (589)
. .+.+.+...+...|++++|.+++++. ...+. ..++..+...+...|++++|..+++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23444556666789999999888765 22333 4567778899999999999999999988731
Q ss_pred -CCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 495 -PKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 495 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
|....++..++.+|...|++++|..++++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 2234588899999999999999999999885
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.7e-07 Score=73.66 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=75.4
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHH
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP----IEAD----AVI 466 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~ 466 (589)
+..+...+...|++++|...+++......-.++ ...+..+...|...|++++|.+.+++.. ..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444455555555555555544332110111 1245556666666666666666665541 1111 334
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCCC------CCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 467 WANLLGSCRVYKNVELAELALERLTELEPK------NPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+..+...+...|++++|.+.+++++++.+. ....+..++.++...|++++|.+.+++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 555667777888888888888888764321 23467788888888888888888888764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-06 Score=82.18 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHH
Q 007808 431 QIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIY 508 (589)
Q Consensus 431 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 508 (589)
+...|..+..+|.+.|++++|++.++++ ...| +...+..+..+|...|++++|+..|+++++++|+++.++..++.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888999999999999999999988 5556 5778888889999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHH
Q 007808 509 GDLGRWKDVARI 520 (589)
Q Consensus 509 ~~~g~~~~A~~~ 520 (589)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999998888764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.7e-06 Score=64.42 Aligned_cols=88 Identities=16% Similarity=0.087 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
+...+..+..++...|++++|+..|+++++++|+++.+|..++.+|...|++++|++.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----------------- 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI----------------- 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence 567788888999999999999999999999999999999999999999999999999999885
Q ss_pred eeeeeccccCC--CchHHHHHHHHHHHHcccCCC
Q 007808 543 VVMLGCLSREL--DRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 543 ~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~ 574 (589)
++.| .+......+..++...+....
T Consensus 69 -------~l~~~~~~~~~~~~l~~~l~~~~~~~~ 95 (100)
T 3ma5_A 69 -------EVAREEGTQKDLSELQDAKLKAEGLEH 95 (100)
T ss_dssp -------HHHHHHSCHHHHHHHHHHHHHHHTTC-
T ss_pred -------hhhhcCCchhHHHHHHHHHHHcccccc
Confidence 2322 445566667777766665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-05 Score=80.11 Aligned_cols=169 Identities=9% Similarity=-0.002 Sum_probs=131.2
Q ss_pred ChHHHHHHHhhCCC---CCcchHHHHHHHHHhCCC----------hHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccC-
Q 007808 345 IIENAVDVFNSMDT---KDLITWNTIISGLAMHGR----------GAGALSLFHEMKNAGEMPDGITFIGILCACTHMG- 410 (589)
Q Consensus 345 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g- 410 (589)
..++|++.++.+.. .+..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 34566777776652 244556665566665555 889999999999852 336677888777888888
Q ss_pred -cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC-CHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcC---------
Q 007808 411 -LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG-RLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVY--------- 477 (589)
Q Consensus 411 -~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 477 (589)
+++++++.++++.+. .+-+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 779999999999863 2456788888888888888 899999999888 4555 677788777665542
Q ss_pred -----CCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHH
Q 007808 478 -----KNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516 (589)
Q Consensus 478 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 516 (589)
+.++++.+.+++++.++|++..+|..+..++.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999998665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.1e-06 Score=66.06 Aligned_cols=76 Identities=9% Similarity=0.063 Sum_probs=62.6
Q ss_pred HHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 450 EAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 450 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+|++.++++ ...| +...+..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|+..+++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355556655 3344 567777888888899999999999999999999988899999999999999999999998885
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=3.6e-07 Score=70.82 Aligned_cols=95 Identities=14% Similarity=0.010 Sum_probs=78.4
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC------Ccch
Q 007808 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKN------PANF 501 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 501 (589)
++...+..+...+.+.|++++|++.++++ ...| +...+..+..++...|++++|++.++++++++|++ ...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34566778888899999999999999887 3344 67788888899999999999999999999999998 7778
Q ss_pred HHHHHHHhhcCChHHHHHHHHHh
Q 007808 502 VMLSNIYGDLGRWKDVARIKVAM 524 (589)
Q Consensus 502 ~~l~~~~~~~g~~~~A~~~~~~~ 524 (589)
..++.++...|++++|++.++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 88888888888887776655543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=6.1e-06 Score=81.86 Aligned_cols=125 Identities=13% Similarity=0.113 Sum_probs=96.2
Q ss_pred HHhccCcHHHHHHHHHHhHHhcC--CCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCC-HHHHH
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYS--IVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM---------PIEAD-AVIWA 468 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 468 (589)
.+...|++++|+.++++.+.... +.|+ ..+++.|+.+|...|++++|+.++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577888888888877755321 1222 457888899999999999998888775 13343 35688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHc-----cCCCCCcc---hHHHHHHHhhcCChHHHHHHHHHhhhCCC
Q 007808 469 NLLGSCRVYKNVELAELALERLTE-----LEPKNPAN---FVMLSNIYGDLGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 469 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 529 (589)
.|...|..+|++++|+.+++++++ +.|++|.+ ...+..++...|++++|+..+++++++..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999987 56877654 45777888899999999999999976443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.4e-06 Score=67.79 Aligned_cols=133 Identities=12% Similarity=0.067 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEM-PD----GITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IE 433 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 433 (589)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455556666667777777766665542100 11 135666677777778888887777776542211111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC
Q 007808 434 HYGCMVDLLARAGRLAEAVDFVKRMP----IEAD----AVIWANLLGSCRVYKNVELAELALERLTELEP 495 (589)
Q Consensus 434 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 495 (589)
.+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++++|.+.+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56667777888888888887777651 1111 34456666778888999999999888887543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.16 E-value=5.6e-06 Score=62.45 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=54.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHccCCCCCc-chHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeecc
Q 007808 471 LGSCRVYKNVELAELALERLTELEPKNPA-NFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCL 549 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (589)
...+...|++++|+..++++++.+|+++. .+..++.+|...|++++|++.+++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al------------------------ 62 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI------------------------ 62 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------
Confidence 34556677777777777777777777777 77777777777777777777777774
Q ss_pred ccCCCchHHH--HHHHHHHHHccc
Q 007808 550 SRELDRKSIV--RAEANMIKLLPQ 571 (589)
Q Consensus 550 ~~~p~~~~~~--~~l~~~~~~~~~ 571 (589)
+++|+++.++ ..++.++....+
T Consensus 63 ~~~p~~~~~~~~~~~~~a~~~~~~ 86 (99)
T 2kc7_A 63 ELNPDSPALQARKMVMDILNFYNK 86 (99)
T ss_dssp HHCTTSTHHHHHHHHHHHHHHHCC
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHH
Confidence 5677777766 555555554443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-06 Score=67.25 Aligned_cols=77 Identities=8% Similarity=-0.103 Sum_probs=71.3
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHH
Q 007808 482 LAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRA 561 (589)
Q Consensus 482 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 561 (589)
.|++.|+++++.+|+++..+..++.+|...|++++|+..+++.. +++|+++.++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------~~~p~~~~~~~~ 58 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAAL------------------------DFDPTYSVAWKW 58 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH------------------------HHCCCcHHHHHH
Confidence 57889999999999999999999999999999999999999986 788999999999
Q ss_pred HHHHHHHcccCCCCcchHhhh
Q 007808 562 EANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 562 l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+|.+|..+|+.++|+..+...
T Consensus 59 la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 59 LGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999888877654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.3e-07 Score=74.33 Aligned_cols=81 Identities=10% Similarity=0.054 Sum_probs=70.2
Q ss_pred cCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh----------HHHHHHHHHhhhCCCccCCccceeeeCCeee
Q 007808 476 VYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRW----------KDVARIKVAMRDTGFKKLPGCSSIEVNEVVM 545 (589)
Q Consensus 476 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (589)
+.+.+++|.+.++++++++|+++..|..++.++...|++ ++|+..+++..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL-------------------- 73 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-------------------- 73 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH--------------------
Confidence 456789999999999999999999999999999999876 48888888875
Q ss_pred eeccccCCCchHHHHHHHHHHHHcc-----------cCCCCcchHh
Q 007808 546 LGCLSRELDRKSIVRAEANMIKLLP-----------QNNHPLTFIV 580 (589)
Q Consensus 546 ~~~~~~~p~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~ 580 (589)
+++|+++.++..||++|..+| +.++|+.+..
T Consensus 74 ----~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~ 115 (158)
T 1zu2_A 74 ----LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ 115 (158)
T ss_dssp ----HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred ----HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence 899999999999999999886 5666665543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.10 E-value=9.4e-06 Score=59.92 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 432 IEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 432 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
...+..+...+...|++++|+..+++. ...| +...+..+..++...|++++|...++++++++|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777888888889999999888877 2333 56778888899999999999999999999999999999999999987
Q ss_pred hcC
Q 007808 510 DLG 512 (589)
Q Consensus 510 ~~g 512 (589)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2.7e-06 Score=80.51 Aligned_cols=411 Identities=9% Similarity=0.057 Sum_probs=234.1
Q ss_pred hHHHhHHHHHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCC--ChhHHHHHHHHHhcCCC
Q 007808 135 IFVGTALIELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPER--DVILWNTIVSGYIDVRN 212 (589)
Q Consensus 135 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 212 (589)
+.+|..|..+....+.+.+|++-|-+ ..|+..|..+|.+..+.|.+++-.+.+...++. ++..=+.|+-+|++.++
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR 131 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCc
Confidence 45666777777777777766655532 345566777777777778887777777766643 55555677778888887
Q ss_pred hHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------CCchhHHHHHHH
Q 007808 213 MIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE------------------------RNVFSWNGLIGG 268 (589)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~~~~l~~~ 268 (589)
..+-.+++.. ||..-...+.+-|...|.++.|.-+|..+.. .++.+|..+-.+
T Consensus 132 L~elEefl~~---~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~A 208 (624)
T 3lvg_A 132 LAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA 208 (624)
T ss_dssp SSTTTSTTSC---CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHH
T ss_pred HHHHHHHHcC---CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 6664444332 6666666777777777888777777766642 367788888888
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007808 269 YANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIEN 348 (589)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (589)
|...+++.-|.-.--.++-. || .+..++..|...|-+++-..+++..... -.....+|+-|.-.|++- +.++
T Consensus 209 Cvd~~EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 209 CVDGKEFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHSCTTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HhCchHHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHH
Confidence 88888887765544333322 22 1223556677888888888877776632 245677888888888775 5566
Q ss_pred HHHHHhhCCC----C-------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHH
Q 007808 349 AVDVFNSMDT----K-------DLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLS 417 (589)
Q Consensus 349 A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 417 (589)
..+-++.... | ....|.-++-.|.+-.+++.|... |.++ +|+...-...-....+..+.+---+
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~KVaN~EiyYK 355 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYR 355 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGGCSCSHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHHcchHHHHHH
Confidence 6666554442 2 446788898899988888877543 2221 1111111111112222233222111
Q ss_pred HHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-------------CCCCCHHHHHHHHHHHhcCCCHHHHH
Q 007808 418 YFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-------------PIEADAVIWANLLGSCRVYKNVELAE 484 (589)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~~~p~~~~~~~l~~~~~~~g~~~~A~ 484 (589)
.+.-.++ ..|.. .+-|+..+...=+..++.++|++. ....+...-.++-..|....|++.-.
T Consensus 356 Ai~FYL~---e~P~l--L~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR 430 (624)
T 3lvg_A 356 AIQFYLE---FKPLL--LNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR 430 (624)
T ss_dssp HHHHHTT---SCCTT--SHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHH---hChHH--HHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHH
Confidence 1111111 12332 333444444444555555555554 22223344444556677777776433
Q ss_pred HHHHH-----------HHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCC
Q 007808 485 LALER-----------LTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSREL 553 (589)
Q Consensus 485 ~~~~~-----------~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 553 (589)
...+. -++..+- .+....-+.+|.+.++|++++++.++ .++-+|. +.- .-..
T Consensus 431 ~SId~ydNFD~i~LA~rLEkHeL-~eFRrIAA~LYkkn~rw~qsi~l~Kk---DklykDA----------iet---Aa~S 493 (624)
T 3lvg_A 431 TSIDAYDNFDNISLAQRLEKHEL-IEFRRIAAYLFKGNNRWKQSVELCKK---DSLYKDA----------MQY---ASES 493 (624)
T ss_dssp HTTSSCCCSCTTHHHHHHHTCSS-HHHHHHHHHHHHTTCHHHHHSSCSST---TCCTTGG----------GTT---TTTC
T ss_pred HHHHHhccccHHHHHHHHhhCch-HHHHHHHHHHHHhcccHHHHHHHHHh---cccHHHH----------HHH---HHHc
Confidence 21111 0111121 44555667778889999999886332 2222221 000 1223
Q ss_pred CchHHHHHHHHHHHHcccCCCCcchHhhhhhcccC
Q 007808 554 DRKSIVRAEANMIKLLPQNNHPLTFIVVIFSTFAS 588 (589)
Q Consensus 554 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (589)
.++++.+.|-+-+-+.|+. .-|...|+.|||=
T Consensus 494 ~~~elaeeLL~yFv~~g~~---EcF~a~LytCYdL 525 (624)
T 3lvg_A 494 KDTELAEELLQWFLQEEKR---ECFGACLFTCYDL 525 (624)
T ss_dssp CCTTHHHHHHHHHHHHCST---HHHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHcCch---HHHHHHHHHHhhc
Confidence 4455555444444455554 3488888888863
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.02 E-value=4.2e-05 Score=56.42 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHhcCCC---HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 461 EADAVIWANLLGSCRVYKN---VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
+++...+..+..++...++ .++|..+++++++++|+++.++..++..+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3466777777777654444 7999999999999999999999999999999999999999999997433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=5.5e-06 Score=82.17 Aligned_cols=124 Identities=10% Similarity=-0.040 Sum_probs=91.3
Q ss_pred HHHHhcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHc-----cCCCCCc---ch
Q 007808 440 DLLARAGRLAEAVDFVKRM---------PIEAD-AVIWANLLGSCRVYKNVELAELALERLTE-----LEPKNPA---NF 501 (589)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~ 501 (589)
..+...|++++|+.++++. +..|+ ..+++.+..+|..+|++++|+.+++++++ +.|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999888765 12333 46788889999999999999999999987 4566654 68
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchH
Q 007808 502 VMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 502 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
+.|+.+|...|++++|+.++++..+--.. ..| ..||+-..+...|+..+.++|+..+|....
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~lG---------------~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-THG---------------PSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC---------------TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HhC---------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999988521100 000 345555566667888888888765554443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=7.5e-05 Score=60.22 Aligned_cols=89 Identities=8% Similarity=-0.061 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh---
Q 007808 438 MVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRV----YKNVELAELALERLTELEPKNPANFVMLSNIYGD--- 510 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 510 (589)
|...|...+..++|++.|++.-...+...+..+...|.. .+++++|.+.|+++.+. .++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444445555555555554222344445555555544 56666666666666655 335666677777766
Q ss_pred -cCChHHHHHHHHHhhhCC
Q 007808 511 -LGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 511 -~g~~~~A~~~~~~~~~~~ 528 (589)
.+++++|.+++++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 667777777777665443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=3.9e-05 Score=61.39 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=71.0
Q ss_pred CCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHccC-C-CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc
Q 007808 461 EADAVIWANLLGSCRVYK---NVELAELALERLTELE-P-KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC 535 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 535 (589)
.++..+.-.+..++.+++ +.++++.+++.+++.+ | ++..+++.|+-.|.+.|++++|.++++.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL---------- 98 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL---------- 98 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH----------
Confidence 457777777778888887 6668888898888887 6 457888888999999999999999988885
Q ss_pred ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 536 SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 536 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+.+|+|..+..+..-+-.++.+.
T Consensus 99 --------------~ieP~n~QA~~Lk~~ie~~~~kd 121 (152)
T 1pc2_A 99 --------------QTEPQNNQAKELERLIDKAMKKD 121 (152)
T ss_dssp --------------HHCTTCHHHHHHHHHHHHHHHHT
T ss_pred --------------hcCCCCHHHHHHHHHHHHHHHHh
Confidence 78899988888877777666554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.86 E-value=6.4e-06 Score=62.28 Aligned_cols=65 Identities=8% Similarity=0.023 Sum_probs=58.0
Q ss_pred cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 493 LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 493 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
.+|+++.++..++.+|.+.|++++|++.++++. +++|+++.++..+|.+|..+|+.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------~~~p~~~~a~~~lg~~~~~~g~~ 57 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELV------------------------ETDPDYVGTYYHLGKLYERLDRT 57 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHSTTCTHHHHHHHHHHHHTTCH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCcHHHHHHHHHHHHHcCCH
Confidence 468999999999999999999999999999986 78999999999999999999999
Q ss_pred CCCcchHhh
Q 007808 573 NHPLTFIVV 581 (589)
Q Consensus 573 ~~~~~~~~~ 581 (589)
++|+..+..
T Consensus 58 ~~A~~~~~~ 66 (100)
T 3ma5_A 58 DDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=7.6e-05 Score=72.73 Aligned_cols=103 Identities=10% Similarity=0.033 Sum_probs=76.7
Q ss_pred hcCCHHHHHHHHhhC---------CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHc-----cCCCCCc---chHHHH
Q 007808 444 RAGRLAEAVDFVKRM---------PIEAD-AVIWANLLGSCRVYKNVELAELALERLTE-----LEPKNPA---NFVMLS 505 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~ 505 (589)
..|++++|+.++++. +..|+ ..+++.+..+|..+|++++|+.+++++++ +.|++|. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346677777776654 12333 36688888999999999999999999987 4566654 688999
Q ss_pred HHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHH
Q 007808 506 NIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANM 565 (589)
Q Consensus 506 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 565 (589)
.+|...|++++|+.++++..+-- -..+.|++|.+.+...++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~-------------------~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIM-------------------EVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-------------------HHHTCTTCHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHH-------------------HHHcCCCChHHHHHHHHH
Confidence 99999999999999999885211 114678888888766554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.75 E-value=5.3e-05 Score=71.89 Aligned_cols=234 Identities=12% Similarity=0.088 Sum_probs=161.2
Q ss_pred CccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 007808 33 SDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVK 112 (589)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 112 (589)
.+.+|+.|..+..+.+++.+|++-|= +..|+..|..++.+..+.|.+++-++.+...++..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 45778889999998999988888763 345777789999999999999999999977766533 33444678888998
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC------------------------CCeeh
Q 007808 113 INALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE------------------------RNVVV 168 (589)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~ 168 (589)
.++..+-++.+ -.||..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 88876654432 235555556666677777777777777766542 36678
Q ss_pred HHHHHHHHHhCCCHHHHHHHH-HhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCC---CChhhHHHHHHHHHhcCCH
Q 007808 169 WTSMINGYISCGDIVSARCLF-ELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPK---KDVISWNTMLSGYANNGDV 244 (589)
Q Consensus 169 ~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 244 (589)
|..+..+|...+++.-|.-.- .-+..+|. ...++..|-..|.+++-+.+++.... .....|+.|.-.|+|- +.
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CH
Confidence 888888888888776553321 22222211 12345557778888888888877663 5566788887777765 45
Q ss_pred HHHHHHHhhCCC-----------CCchhHHHHHHHHHhCCChHHHHH
Q 007808 245 EECKRLFEEMPE-----------RNVFSWNGLIGGYANNGLFFEVLD 280 (589)
Q Consensus 245 ~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~ 280 (589)
++..+.++..-. .....|..++-.|.+-.+++.|..
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 555555554432 244578888888888888887764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00037 Score=56.05 Aligned_cols=112 Identities=12% Similarity=-0.037 Sum_probs=91.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHH
Q 007808 375 GRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAE 450 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 450 (589)
+++++|+++|++..+.| .|+.. +...|...+.+++|.++|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999987 44443 777777888889999999998653 567778888888988 889999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCC
Q 007808 451 AVDFVKRMPIEADAVIWANLLGSCRV----YKNVELAELALERLTELEP 495 (589)
Q Consensus 451 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 495 (589)
|++.|++.-..-+...+..+...|.. .++.++|.+.|+++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988434567778888888887 8999999999999998754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.65 E-value=3e-05 Score=58.32 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=59.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHH-HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEA-DAV-IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRW 514 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 514 (589)
.+..+.+.|++++|++.++++ ...| +.. .+..+..++...|++++|++.|+++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677888888888888877 3344 456 77777888888999999999999999999987766532 556
Q ss_pred HHHHHHHHHh
Q 007808 515 KDVARIKVAM 524 (589)
Q Consensus 515 ~~A~~~~~~~ 524 (589)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 6666666655
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00034 Score=68.28 Aligned_cols=87 Identities=9% Similarity=0.095 Sum_probs=69.8
Q ss_pred HHHHHhcCCHHHHHHHHhhC-C-----CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHc-----cCCCCCc---c
Q 007808 439 VDLLARAGRLAEAVDFVKRM-P-----IEAD----AVIWANLLGSCRVYKNVELAELALERLTE-----LEPKNPA---N 500 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~-~-----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~---~ 500 (589)
+..+.+.|++++|++++++. . ..|+ ..+++.+..+|..+|++++|+.+++++++ +.|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44466788999998888765 1 2232 35678888999999999999999999987 4566554 6
Q ss_pred hHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 501 FVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 501 ~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
++.|+.+|...|++++|+.+++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8899999999999999999999885
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00024 Score=53.85 Aligned_cols=83 Identities=10% Similarity=-0.061 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------CCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELE-------PKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC 535 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 535 (589)
+...+..+...+.+.|++..|..-|+++++.. +..+.++..|+.+|.+.|++++|+.+++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al---------- 73 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL---------- 73 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH----------
Confidence 44556677888899999999999999998842 2345689999999999999999999999986
Q ss_pred ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHc
Q 007808 536 SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLL 569 (589)
Q Consensus 536 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 569 (589)
+++|+++.+..+++++-..+
T Consensus 74 --------------~l~P~~~~~~~n~~~~~~~~ 93 (104)
T 2v5f_A 74 --------------ELDPEHQRANGNLKYFEYIM 93 (104)
T ss_dssp --------------HHCTTCHHHHHHHHHHHHHH
T ss_pred --------------hcCCCCHHHHhhHHHHHHHH
Confidence 78999999999988555433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0011 Score=61.91 Aligned_cols=64 Identities=19% Similarity=0.158 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 461 EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+.+...+..+...+...|++++|...++++++++|+ ...|..++.++.-.|++++|++.+++..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346677777766666678999999999999988875 6677788888888999999998888775
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0033 Score=58.68 Aligned_cols=138 Identities=11% Similarity=-0.035 Sum_probs=91.6
Q ss_pred CCcchHHHHHHHHH--hCC---ChHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhc---cC-----cHHHHHHHHHHhHH
Q 007808 359 KDLITWNTIISGLA--MHG---RGAGALSLFHEMKNAGEMPD-GITFIGILCACTH---MG-----LVEEGLSYFQSMAM 424 (589)
Q Consensus 359 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~---~g-----~~~~A~~~~~~~~~ 424 (589)
.+...|...+.+.. ..+ +..+|..+|++..+ ..|+ ...+..+..+|.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35666666665533 233 34678889998888 4675 3444444433321 01 11111112222111
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCC
Q 007808 425 DYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNP 498 (589)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 498 (589)
....+.++.+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.|++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1123566788888888888889999999999998 4568887787778889999999999999999999999843
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00071 Score=65.89 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=66.1
Q ss_pred ccCcHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCC-HHHHHHHH
Q 007808 408 HMGLVEEGLSYFQSMAMDY--SIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM---------PIEAD-AVIWANLL 471 (589)
Q Consensus 408 ~~g~~~~A~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 471 (589)
..|++++|+.++++.+... -+.|+ ..+++.|+.+|...|++++|+.+++++ +..|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777777664421 12222 456778888888888888888877765 13444 35678888
Q ss_pred HHHhcCCCHHHHHHHHHHHHc-----cCCCCCcch
Q 007808 472 GSCRVYKNVELAELALERLTE-----LEPKNPANF 501 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~ 501 (589)
..|..+|++++|+.+++++++ +.|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999987 567766443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00069 Score=52.05 Aligned_cols=88 Identities=9% Similarity=-0.030 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHhcCCCHHH---HHHHHHHHHccC-C-CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCcc
Q 007808 461 EADAVIWANLLGSCRVYKNVEL---AELALERLTELE-P-KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGC 535 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 535 (589)
.|+..+--.+.+++.++++... ++.+++.+++.+ | .....++.|+-.+.+.|+|++|.++++.+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL---------- 101 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL---------- 101 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH----------
Confidence 3566666667777777776555 778888877766 5 456778888888888888888888888875
Q ss_pred ceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 536 SSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 536 ~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+.+|+|..+..+..-+..++.+.
T Consensus 102 --------------~~eP~n~QA~~Lk~~i~~~i~kd 124 (126)
T 1nzn_A 102 --------------QTEPQNNQAKELERLIDKAMKKD 124 (126)
T ss_dssp --------------HHCTTCHHHHHHHHHHHHHHHHC
T ss_pred --------------HhCCCCHHHHHHHHHHHHHHHhc
Confidence 78888888888887777666554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0014 Score=63.85 Aligned_cols=100 Identities=13% Similarity=-0.031 Sum_probs=72.9
Q ss_pred HHHHhccCcHHHHHHHHHHhHHhc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC---------CCCCC-HHH
Q 007808 403 LCACTHMGLVEEGLSYFQSMAMDY--SIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM---------PIEAD-AVI 466 (589)
Q Consensus 403 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 466 (589)
+..+.+.|++++|+.++++.+... -+.|+ ..+++.|+.+|...|++++|+.+++++ +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556688888888888775421 12232 457788888888899999988888765 13343 356
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHc-----cCCCCCcchH
Q 007808 467 WANLLGSCRVYKNVELAELALERLTE-----LEPKNPANFV 502 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~~~ 502 (589)
++.+...|..+|++++|+.+++++++ +.|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 78888999999999999999999987 5788775443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.2 Score=50.91 Aligned_cols=114 Identities=11% Similarity=-0.003 Sum_probs=62.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhH----HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 375 GRGAGALSLFHEMKNAGEMPDGIT----FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 375 ~~~~~A~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
.+++.|...|....... ..+... ...++......+...++...+...... .++.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 36777888887776532 222222 222333333444344555555554321 2333333444444556788888
Q ss_pred HHHHHhhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHc
Q 007808 451 AVDFVKRMPIEA--DAVIWANLLGSCRVYKNVELAELALERLTE 492 (589)
Q Consensus 451 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 492 (589)
|...|+.|+..+ .....-=+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888885332 222222234566677888888888888765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00075 Score=60.21 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=70.5
Q ss_pred HHHHHHHHhhC-CCCCC---HHHHHHHHHHHhc-----CCCHHHHHHHHHHHHccCCCC-CcchHHHHHHHhhc-CChHH
Q 007808 448 LAEAVDFVKRM-PIEAD---AVIWANLLGSCRV-----YKNVELAELALERLTELEPKN-PANFVMLSNIYGDL-GRWKD 516 (589)
Q Consensus 448 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 516 (589)
..+|...++++ .+.|+ ...|..+...|.+ .|+.++|.++|+++++++|+. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 35566666666 46776 5567778888877 499999999999999999974 99999999999985 99999
Q ss_pred HHHHHHHhhhCCCccCCc
Q 007808 517 VARIKVAMRDTGFKKLPG 534 (589)
Q Consensus 517 A~~~~~~~~~~~~~~~~~ 534 (589)
|.+++++....+...+|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998766654443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.011 Score=45.23 Aligned_cols=142 Identities=10% Similarity=0.051 Sum_probs=101.6
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
+.-.|..++..++..+... ..+..-||.++--....-+-+-..+.++.+-+- .| ...+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------cHhhhcHHH
Confidence 3446777788888777776 234555666665555555556566666655322 22 125666666
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCc
Q 007808 451 AVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFK 530 (589)
Q Consensus 451 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 530 (589)
....+-.+. .+...+...+..+..+|+-++-.+++..++...|.+|+.+..++.+|.+.|+..+|.++++++-+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666664 345556667788899999999999999977766667999999999999999999999999999988875
Q ss_pred c
Q 007808 531 K 531 (589)
Q Consensus 531 ~ 531 (589)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0003 Score=51.77 Aligned_cols=66 Identities=9% Similarity=-0.011 Sum_probs=58.5
Q ss_pred CCCCCcchHHHHHHHhhcCC---hHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcc
Q 007808 494 EPKNPANFVMLSNIYGDLGR---WKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLP 570 (589)
Q Consensus 494 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 570 (589)
+|+++..+..++.++...++ .++|..++++.. +++|+++.+...||.++++.|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL------------------------~~dp~~~rA~~~lg~~~~~~g 57 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQAL------------------------QLEPYNEAALSLIANDHFISF 57 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH------------------------HHCcCCHHHHHHHHHHHHHcC
Confidence 58889999999999976655 799999999986 899999999999999999999
Q ss_pred cCCCCcchHhhhh
Q 007808 571 QNNHPLTFIVVIF 583 (589)
Q Consensus 571 ~~~~~~~~~~~~~ 583 (589)
+..+|+.+...+.
T Consensus 58 ~y~~Ai~~w~~~l 70 (93)
T 3bee_A 58 RFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999998766543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0075 Score=53.86 Aligned_cols=114 Identities=14% Similarity=0.093 Sum_probs=83.9
Q ss_pred hcCCHHHHHHHHhhCC-CCCCHHHHHHHHHH-Hhc--CC------CHHHHHHHHHHHHccCCC--CCcchHHHHHHHhh-
Q 007808 444 RAGRLAEAVDFVKRMP-IEADAVIWANLLGS-CRV--YK------NVELAELALERLTELEPK--NPANFVMLSNIYGD- 510 (589)
Q Consensus 444 ~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~-~~~--~g------~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~- 510 (589)
+.++..+-.+.+.++. ..+....|..++.+ +.. .| ....|...++++++++|+ +..+|..|+..|..
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~v 212 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAA 212 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHS
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhC
Confidence 3444444455555553 23345667776643 322 23 368899999999999999 77899999999999
Q ss_pred ----cCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCc-hHHHHHHHHHHHH-cccCCCCcchHhh
Q 007808 511 ----LGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDR-KSIVRAEANMIKL-LPQNNHPLTFIVV 581 (589)
Q Consensus 511 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~~~~~~~~~~~~~ 581 (589)
.|+.++|.+.|++.. +++|+. ..++...|+-+.. .|+..++.+++..
T Consensus 213 Pp~~gGd~ekA~~~ferAL------------------------~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 213 PESFGGGMEKAHTAFEHLT------------------------RYCSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp CTTTTCCHHHHHHHHHHHH------------------------HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHH------------------------HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 499999999999986 788975 9999999988876 4766666666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.096 Score=56.12 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=91.2
Q ss_pred HHHHhCCCHHHHHH-HHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 007808 174 NGYISCGDIVSARC-LFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFE 252 (589)
Q Consensus 174 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 252 (589)
......+++++|.+ ++..+. +......++..+.+.|.+++|.++.+. . ..-.......|+++.|.++.+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHH
Confidence 44455677777776 553332 122336666777778888888777642 1 112344566788888888877
Q ss_pred hCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhH
Q 007808 253 EMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCV 332 (589)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 332 (589)
.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...++.+....+-+.+...|.
T Consensus 677 ~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------ 738 (814)
T 3mkq_A 677 DES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK------ 738 (814)
T ss_dssp TCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------
T ss_pred hhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------
Confidence 663 456788888888888888888888887632 22333344445666555554444444331
Q ss_pred HHHHHHHHHhcCChHHHHHHHh
Q 007808 333 GNALIDMYAKCGIIENAVDVFN 354 (589)
Q Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~ 354 (589)
++.-..+|.+.|++++|++++.
T Consensus 739 ~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 739 FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHH
Confidence 2223334555666666665543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.014 Score=45.56 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHhcCCC---HHHHHHHHHHHHccCC-CCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccc
Q 007808 461 EADAVIWANLLGSCRVYKN---VELAELALERLTELEP-KNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCS 536 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 536 (589)
.|+..+--.+.+++.++.+ ..+++.+++.+.+..| ...+.++.|+-.+.+.|++++|.++.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL----------- 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF----------- 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------
Confidence 4566665556667666654 4567778888877777 345677778888888888888888888775
Q ss_pred eeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 537 SIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 537 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+.+|+|..+..+...+..++.+.
T Consensus 105 -------------~~eP~n~QA~~Lk~~Ie~~i~kd 127 (144)
T 1y8m_A 105 -------------EHERNNKQVGALKSMVEDKIQKE 127 (144)
T ss_dssp -------------HTCCCCHHHHHHHHHHHHHHHHT
T ss_pred -------------hcCCCcHHHHHHHHHHHHHHHHh
Confidence 77888888888877777666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0054 Score=46.18 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---------CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHH
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRMP---------IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 505 (589)
...|+..+.+.|++..|...++.+. -.+....+..+..++.+.|++++|...++++++++|+++.+..++.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3445555556666666665555441 1234567788889999999999999999999999999877655554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0035 Score=50.18 Aligned_cols=87 Identities=16% Similarity=0.014 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcC---CHHHHHHHHhhC-CCC-C--CHHHHHHHHHHHhcCCCHHHH
Q 007808 411 LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAG---RLAEAVDFVKRM-PIE-A--DAVIWANLLGSCRVYKNVELA 483 (589)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 483 (589)
....+.+.|.+.... + .++..+.-.+..++++.+ +.++++.++++. ... | ....+-.+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 344555555555432 2 367777777778888877 555788888776 223 5 245555666888999999999
Q ss_pred HHHHHHHHccCCCCCc
Q 007808 484 ELALERLTELEPKNPA 499 (589)
Q Consensus 484 ~~~~~~~~~~~p~~~~ 499 (589)
.++++++++++|+|..
T Consensus 91 ~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhcCCCCHH
Confidence 9999999999998663
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.016 Score=62.15 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=55.5
Q ss_pred HhcCChHHHHH-HHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHH
Q 007808 341 AKCGIIENAVD-VFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYF 419 (589)
Q Consensus 341 ~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 419 (589)
...+++++|.+ ++..+.. ......++..+.+.|.+++|+++.+. |. .- .......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-~~----f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-------QD-QK----FELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-HH----HHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-------cc-hh----eehhhhcCCHHHHHHHH
Confidence 34566666666 4433220 11225555566666777766655421 11 11 12234557777777764
Q ss_pred HHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 420 QSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
+.+ .+...|..+...+.+.|+++.|++.|.+++
T Consensus 676 ~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 676 TDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp TTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred Hhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 433 455677777777777777777777777764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0039 Score=47.96 Aligned_cols=88 Identities=11% Similarity=0.007 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHhcCCC---HHHHHHHHHHHHccCCC-CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccc
Q 007808 461 EADAVIWANLLGSCRVYKN---VELAELALERLTELEPK-NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCS 536 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 536 (589)
.|+..+--.+.+++.++.+ ..+++.+++.+.+.+|. ..+.+..|+-.+.+.|++++|.++.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL----------- 105 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF----------- 105 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----------
Confidence 4566665566677766654 45788888888887773 46788889999999999999999988886
Q ss_pred eeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 537 SIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 537 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+.+|+|..+..+...|-.++.+.
T Consensus 106 -------------~~eP~N~QA~~Lk~~Ie~ki~kd 128 (134)
T 3o48_A 106 -------------EHERNNKQVGALKSMVEDKIQKE 128 (134)
T ss_dssp -------------TTCTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------hhCCCCHHHHHHHHHHHHHHHhh
Confidence 78899999998888887766543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.045 Score=44.12 Aligned_cols=132 Identities=14% Similarity=0.006 Sum_probs=71.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHhhC----CCCC-CHH
Q 007808 398 TFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQI-------EHYGCMVDLLARAGRLAEAVDFVKRM----PIEA-DAV 465 (589)
Q Consensus 398 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~ 465 (589)
++..-+..+...|.++.|+-+...+..-.+..|+. .++..+.+++...|++.+|...|+++ ..-+ ...
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444555666677777776665543322223331 23445566666777777766666653 0001 100
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeee
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVM 545 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (589)
....+. ....... -..+ +.+.+..+.++.+|.+.|++++|+.+++.+.
T Consensus 102 ~~~~~~----~~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-------------------- 149 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIP-------------------- 149 (167)
T ss_dssp --------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC--------------------
T ss_pred cccccc----ccCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCC--------------------
Confidence 000000 0000000 0111 2234677889999999999999999988763
Q ss_pred eeccccCCCchHHHHHHHHHH
Q 007808 546 LGCLSRELDRKSIVRAEANMI 566 (589)
Q Consensus 546 ~~~~~~~p~~~~~~~~l~~~~ 566 (589)
..-..+.+...||++|
T Consensus 150 -----~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 150 -----SRQRTPKINMLLANLY 165 (167)
T ss_dssp -----GGGCCHHHHHHHHHHC
T ss_pred -----chhcCHHHHHHHHHHh
Confidence 2236688888888887
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.32 Score=39.92 Aligned_cols=101 Identities=16% Similarity=0.177 Sum_probs=49.7
Q ss_pred HhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHH
Q 007808 341 AKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQ 420 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 420 (589)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++... +..+.-.|...|+.+.-.++-+
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 4455666665555544 2445566666666666666666666654432 2233333444455544444333
Q ss_pred HhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 421 SMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
....+ | -++.-...+.-.|++++++++|.+.+
T Consensus 85 iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 85 IAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 22211 1 12333344555666666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.12 Score=39.58 Aligned_cols=90 Identities=16% Similarity=-0.028 Sum_probs=61.3
Q ss_pred CcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH---HHHHHhhC-CCC-C--CHHHHHHHHHHHhcCCCHHH
Q 007808 410 GLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE---AVDFVKRM-PIE-A--DAVIWANLLGSCRVYKNVEL 482 (589)
Q Consensus 410 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 482 (589)
.....+.+-|...... +. |+..+--.+..++++..+..+ ++.++++. ... | .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555555555332 22 666666667788888877666 77788776 222 4 22334445578899999999
Q ss_pred HHHHHHHHHccCCCCCcch
Q 007808 483 AELALERLTELEPKNPANF 501 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~ 501 (589)
|.++++.+++++|+|..+.
T Consensus 93 A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHH
Confidence 9999999999999876543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.082 Score=54.73 Aligned_cols=54 Identities=15% Similarity=-0.044 Sum_probs=50.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 472 GSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 472 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..|...|+++.|+++.++++...|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 556789999999999999999999999999999999999999999999999884
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.70 E-value=1.5 Score=35.99 Aligned_cols=130 Identities=14% Similarity=0.069 Sum_probs=89.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHH
Q 007808 303 SACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 303 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 382 (589)
......|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|.-.|+.++-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHH
Confidence 3455678888888876654 3677899999999999999999999988764 4555556677788777666
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 383 LFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 383 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
+-+.....| -++.....+...|+++++.++|.+.- .-|... ......|..+.|.++.++++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 655555544 24455556667799999999987662 223221 12224667788888888774
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.47 E-value=6 Score=42.01 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=22.0
Q ss_pred cchHHHHHHHHccCChhHHHHHhhcCC
Q 007808 35 YITPRIITACAQLKQMTYARKMFDKIT 61 (589)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 61 (589)
.-|..+++.+.+.++.+.+.++|+...
T Consensus 231 ~dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 231 CDYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456777888888899999999998864
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=1.3 Score=34.20 Aligned_cols=140 Identities=10% Similarity=0.021 Sum_probs=78.5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007808 269 YANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIEN 348 (589)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (589)
+.-.|..++..++..+..... +..-++.++--....-+-+-..++++.+-+ -.|. ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHH
Confidence 344567777777777666543 334444444444444444444443333322 1111 12334444
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC
Q 007808 349 AVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSI 428 (589)
Q Consensus 349 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 428 (589)
....+-.+.. +.......+..+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++.++ |+
T Consensus 80 Vi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 80 VVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 4443333322 3334455667777788888888887775442 4677777777888888888888888888777654 44
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=93.99 E-value=2.6 Score=35.95 Aligned_cols=124 Identities=10% Similarity=0.111 Sum_probs=52.3
Q ss_pred CCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcC
Q 007808 163 ERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNG 242 (589)
Q Consensus 163 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 242 (589)
.++...-...+.++...|+.+..-.+.+.+.++|...-...+.++.+.|+.+....+.+.+..++..+....+.++.+.+
T Consensus 61 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 61 DEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 33433444444444444443333333333444454444444555555554433333333333355545445555555555
Q ss_pred CHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007808 243 DVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLT 287 (589)
Q Consensus 243 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 287 (589)
+.+....+...+..++...-...+.++.+.+. .++...+..+.+
T Consensus 141 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 141 DERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 43333333333333443333333444444333 334444444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.33 E-value=4.8 Score=36.93 Aligned_cols=113 Identities=11% Similarity=-0.043 Sum_probs=58.7
Q ss_pred cchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHH----HHhhhCCCCCCcccHHHHHHHH
Q 007808 35 YITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLF----TQMKKLDAMPNCFTFPIVLKSC 110 (589)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~ 110 (589)
.+|.++..-|.+.+++++|++++.. -...+.+.|+...+.++- +...+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556666677777777777776532 244455566666655543 4444556677766666666665
Q ss_pred hccCChH-HHHHHH----HHHHHhC--CCCchHHHhHHHHHHHcCCChHHHHHHH
Q 007808 111 VKINALR-EGEELH----CLVLKNG--FRANIFVGTALIELYSTGKAIEAAYKVF 158 (589)
Q Consensus 111 ~~~~~~~-~a~~~~----~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 158 (589)
.....-+ .=..+. .+-.+.| ..-|+.....+...|.+.+++.+|+..|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5443211 111122 2222222 2234445555555555555555555555
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.10 E-value=0.2 Score=39.43 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=46.0
Q ss_pred CHhHHHHHHHHHhccCcH------HHHHHHHHHhHHhcCCCCChH-HHHHHHH------HHHhcCCHHHHHHHHhhCC--
Q 007808 395 DGITFIGILCACTHMGLV------EEGLSYFQSMAMDYSIVPQIE-HYGCMVD------LLARAGRLAEAVDFVKRMP-- 459 (589)
Q Consensus 395 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~-- 459 (589)
|..+|-..+....+.|+. ++..++|+++.. .++|+.. .|...+. .+...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455555555555555666 666666666654 3444321 1111111 1122345555555555441
Q ss_pred -CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 460 -IEADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 460 -~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
..- ...|-.....-.++|+...|.+++.+++.+.|.
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 011 333333333334555555555555555555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.10 E-value=0.68 Score=36.54 Aligned_cols=98 Identities=11% Similarity=0.149 Sum_probs=70.0
Q ss_pred CCCcchHHHHHHHHHhCCCh------HHHHHHHHHHHHCCCCCCHhH----HHHHHH---HHhccCcHHHHHHHHHHhHH
Q 007808 358 TKDLITWNTIISGLAMHGRG------AGALSLFHEMKNAGEMPDGIT----FIGILC---ACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 358 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~~~~p~~~~----~~~l~~---~~~~~g~~~~A~~~~~~~~~ 424 (589)
..|..+|-..+...-+.|++ ++..++|++.... ++|+... |..+-- .+...++.++|.++|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 8888889888875 6775421 211111 12344788889999988865
Q ss_pred hcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 425 DYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 425 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
. .-.- ...|......-.+.|+...|.+++.+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 2222 777777778788899999999998876
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=93.05 E-value=3.6 Score=34.70 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=34.0
Q ss_pred CCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCC
Q 007808 164 RNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGD 243 (589)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (589)
++...-...+.++...|..+..-.+.+.+.+++...-...+.++.+.++.+....+.+.+..++..+....+.++.+.++
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 33333334444444444443333333334444444444444444444443333333333333444444444444444444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.50 E-value=0.57 Score=41.21 Aligned_cols=53 Identities=9% Similarity=-0.015 Sum_probs=38.4
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
...+.|+.++|++..+..++-+|.|......|...+|-.|+|+.|.+-++-..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777666664
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.40 E-value=1.3 Score=35.61 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
-.+..+|.+.|++++|+.+++.++
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335566667777777777776664
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.87 E-value=19 Score=38.35 Aligned_cols=253 Identities=15% Similarity=0.104 Sum_probs=125.7
Q ss_pred HHhcCCChHHHHHHhcccCC----CChh--hHHHHHHHHHhcCCHHHHHHHHhhCCC-CC----------chhHHHHHHH
Q 007808 206 GYIDVRNMIEARKLFDQMPK----KDVI--SWNTMLSGYANNGDVEECKRLFEEMPE-RN----------VFSWNGLIGG 268 (589)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----------~~~~~~l~~~ 268 (589)
+....|+.+++..++..... .+.. .=..+.-+....|.-+++...+..... ++ +..-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45667888888888887764 1222 222333445556665566665555432 22 1112233333
Q ss_pred HHhCCC-hHHHHHHHHHHHHcCCCCCcHHHHH--HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHH--HHHhc
Q 007808 269 YANNGL-FFEVLDAFKRMLTEGRVFPNDATIV--TVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALID--MYAKC 343 (589)
Q Consensus 269 ~~~~g~-~~~A~~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ 343 (589)
++..|. -+++.+.+..++... .+...... .+...+.-.|+.+....++..+.+.. +..+...+.. ++...
T Consensus 463 la~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 443443 246667777666543 11111112 22223445566666666766665532 2233333333 33456
Q ss_pred CChHHHHHHHhhCCC-CCcch-HH---HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHH
Q 007808 344 GIIENAVDVFNSMDT-KDLIT-WN---TIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 344 g~~~~A~~~~~~~~~-~~~~~-~~---~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
|+.+.+..+.+.+.. .++.. |. ++..+|+..|+......++..+... ...+......+.-++...|+.+.+.++
T Consensus 538 g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 776666666665542 23322 22 2344566778876666677777763 122222222233344445665556666
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCH-HHHHHHHhhCCCCCCHHH
Q 007808 419 FQSMAMDYSIVPQIEHYGCMVDLLARAGRL-AEAVDFVKRMPIEADAVI 466 (589)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~ 466 (589)
++.+.+ ...|.+..-..+.-+....|.. .+|++.+..+..++|..+
T Consensus 617 v~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 617 VQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp TTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 655533 2234444333444444444443 567777777744555443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.79 E-value=1.8 Score=33.85 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=50.2
Q ss_pred CCChHHHHHHHHHHHhcCCHH---HHHHHHhhC-CCCC-CH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 429 VPQIEHYGCMVDLLARAGRLA---EAVDFVKRM-PIEA-DA-VIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
.|+..+--.+..++++..+.+ +++.++++. ...| +. ...-.+.-++.+.|++++|.++.+.+++++|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 466666666677777777554 456666665 2234 33 33444557899999999999999999999998653
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=90.63 E-value=9 Score=34.25 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=7.1
Q ss_pred CCeehHHHHHHHHHhCCC
Q 007808 164 RNVVVWTSMINGYISCGD 181 (589)
Q Consensus 164 ~~~~~~~~l~~~~~~~g~ 181 (589)
++...-...+.++...|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 444444444444444444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.08 E-value=9.2 Score=37.16 Aligned_cols=186 Identities=9% Similarity=0.071 Sum_probs=117.3
Q ss_pred CCChHHHHHHHHHHHHcC----CCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH----HHHHhc
Q 007808 272 NGLFFEVLDAFKRMLTEG----RVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALI----DMYAKC 343 (589)
Q Consensus 272 ~g~~~~A~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~ 343 (589)
.|++++|++.+..+.+.. ...........++..|...++++...+.+..+.+..... ......++ ......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 378999998887776532 133456678889999999999999888777665443221 22223333 333333
Q ss_pred CChH--HHHHHHhhCCC---CCc-------chHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC---HhHHHHHHHHH
Q 007808 344 GIIE--NAVDVFNSMDT---KDL-------ITWNTIISGLAMHGRGAGALSLFHEMKNA--GEMPD---GITFIGILCAC 406 (589)
Q Consensus 344 g~~~--~A~~~~~~~~~---~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~ 406 (589)
...+ .-..+.+.+.. .-. .....|...|...|++.+|.+++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3322 22333333331 111 12356788889999999999999998752 32222 12456667788
Q ss_pred hccCcHHHHHHHHHHhHHh-cCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007808 407 THMGLVEEGLSYFQSMAMD-YSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRM 458 (589)
Q Consensus 407 ~~~g~~~~A~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 458 (589)
...+++.+|..+++++... ....+. ...+...+..+...+++.+|-+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8999999999999887432 122222 234566777888888998887766554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.05 E-value=11 Score=34.30 Aligned_cols=184 Identities=10% Similarity=0.025 Sum_probs=107.4
Q ss_pred HHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHH--
Q 007808 204 VSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDA-- 281 (589)
Q Consensus 204 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-- 281 (589)
+......|++-+|.+.+ .++..-|.+.+++++|.+++..- ...+.+.|+...|.++
T Consensus 20 l~~~I~~G~yYEAhQ~~-----------Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTL-----------RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHH
Confidence 34445667777776665 45677788888888888876442 3445666776666554
Q ss_pred --HHHHHHcCCCCCcHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChHHHHHH
Q 007808 282 --FKRMLTEGRVFPNDATIVTVLSACARLGAL-----DFSKWVHVYAEYNGY--QGNVCVGNALIDMYAKCGIIENAVDV 352 (589)
Q Consensus 282 --~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (589)
++...+.+ ++++......++..+..-... +-.........+.|. ..++.....+...|.+.|++.+|+.-
T Consensus 78 llvev~~~~~-~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 78 YLLEVYDLAE-VKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHHTT-CCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 44444556 788888877777776553321 122233333333332 24778888899999999999999887
Q ss_pred HhhCCCCCcchHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 353 FNSMDTKDLITWNTIISGLAMH---GRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 353 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
|-.-...+...+..++.-+... |...++-- ..-..++ -|.-.|+...|..+++...+.
T Consensus 157 ~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 157 FMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 7632222344444443333332 32222111 1111222 244568888888888876543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=0.67 Score=44.33 Aligned_cols=66 Identities=17% Similarity=0.058 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhh-----CCCccCC
Q 007808 468 ANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRD-----TGFKKLP 533 (589)
Q Consensus 468 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 533 (589)
..++..+...|++++|...++.++..+|-+...+..++.+|.+.|+..+|++.|++..+ -|+.|.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34556667788888888888888888888788888888888888888888888877643 3666654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=89.56 E-value=8.8 Score=32.50 Aligned_cols=161 Identities=9% Similarity=0.083 Sum_probs=92.7
Q ss_pred HHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHH
Q 007808 157 VFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLS 236 (589)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 236 (589)
+.+.+..++...-...+..+.+.|..+..-.+.+.+.++|...-...+.++...+..+....+.+.+..++..+....+.
T Consensus 24 L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~ 103 (211)
T 3ltm_A 24 YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAV 103 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33334445555555556666666665555555555566676666666777777776555555555555577777777777
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHH
Q 007808 237 GYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKW 316 (589)
Q Consensus 237 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 316 (589)
++.+.++.+....+.+.+..++...-...+.++...|+. +++..+..+.+. ++...-...+.++.+.+. ..+..
T Consensus 104 aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d----~~~~vr~~a~~aL~~~~~-~~~~~ 177 (211)
T 3ltm_A 104 ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD----EDGWVRQSAADALGEIGG-ERVRA 177 (211)
T ss_dssp HHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC----SSHHHHHHHHHHHHHHCS-HHHHH
T ss_pred HHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHcC----CCHHHHHHHHHHHHHhCc-hhHHH
Confidence 777777765555555555556665555556666666553 345555555432 455555555666666654 33334
Q ss_pred HHHHHHH
Q 007808 317 VHVYAEY 323 (589)
Q Consensus 317 ~~~~~~~ 323 (589)
.+..+.+
T Consensus 178 ~L~~~l~ 184 (211)
T 3ltm_A 178 AMEKLAE 184 (211)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.80 E-value=2.4 Score=30.64 Aligned_cols=63 Identities=10% Similarity=0.079 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
+.-+...-++.+....+.|++......+.+|.+.+++..|.++++.+..+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 444667777778888899999999999999999999999999999887655433 456776664
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.76 E-value=2.5 Score=32.53 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHHHhcCCHH---HHHHHHhhC-CCCC-C-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 429 VPQIEHYGCMVDLLARAGRLA---EAVDFVKRM-PIEA-D-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 429 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
.|++.+--.+..++++....+ +++.++++. ...| . ...+-.+.-++.+.|++++|.++.+.+++++|+|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 355555555666676666543 456666655 2234 2 344455557788889999999999999999888654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.60 E-value=17 Score=33.36 Aligned_cols=182 Identities=10% Similarity=0.010 Sum_probs=101.8
Q ss_pred HHHhcCCCh---HHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHH
Q 007808 205 SGYIDVRNM---IEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDA 281 (589)
Q Consensus 205 ~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 281 (589)
......|++ -+|.+.+ .++..-|.+.+++++|.+++-.- ...+.+.|+...|.++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~-----------RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQET-----------RLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHH-----------HHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHH
Confidence 334556777 5665554 45666677788888887776432 3345556666555444
Q ss_pred H----HHHHHcCCCCCcHHHHHHHHHHHHhcCChhHH-HHHHH----HHHHcC--CCCChhHHHHHHHHHHhcCChHHHH
Q 007808 282 F----KRMLTEGRVFPNDATIVTVLSACARLGALDFS-KWVHV----YAEYNG--YQGNVCVGNALIDMYAKCGIIENAV 350 (589)
Q Consensus 282 ~----~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~----~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (589)
- +...+.+ +++|......++..+......+.. ..+.+ .-.+.| ...++.....+...|.+.+++.+|+
T Consensus 78 ~~llvevy~~~~-~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae 156 (336)
T 3lpz_A 78 AVLLVDTFRQAG-QRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAE 156 (336)
T ss_dssp HHHHHHHHHHHT-CCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 3 4445555 777777777777776655432211 22222 233333 3356778888999999999999998
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH
Q 007808 351 DVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM 424 (589)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 424 (589)
.-|-.-..+++..+..++.-+...+...+ ++...-..++ -|...++...|..+++...+
T Consensus 157 ~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 157 KHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 88743222223445444433333322111 1111222222 34556788888877666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.40 E-value=3.7 Score=39.09 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=49.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHH----hcCCCCChHHH
Q 007808 365 NTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAM----DYSIVPQIEHY 435 (589)
Q Consensus 365 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 435 (589)
..++..+...|++++|+..++.+.... +-+...+..++.++...|+..+|++.|+.+.+ +.|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345566777788888888877777642 33667788888888888888888887776533 45777776543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.30 E-value=20 Score=33.91 Aligned_cols=59 Identities=19% Similarity=0.078 Sum_probs=40.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCc-----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 264 GLIGGYANNGLFFEVLDAFKRMLTEGRVFPN-----DATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 264 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
-++..|...|++.+|.+++..+.+.- -..| ...+..-+..|...++..++...+..+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~-~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLREL-KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-TTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 46788889999999988888887752 1112 22345556667777888888777776654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.27 E-value=5.3 Score=41.45 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=30.5
Q ss_pred HhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 007808 406 CTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMP 459 (589)
Q Consensus 406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 459 (589)
|...|+++-|+++-++.+. -.+.+..+|..|..+|...|+++.|+-.+..++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4455666666666666543 122235566666666666666666666666554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.23 E-value=17 Score=33.03 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHH----HHHHHHHCCCCCCHhHHHHHHHHHh
Q 007808 332 VGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALS----LFHEMKNAGEMPDGITFIGILCACT 407 (589)
Q Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~l~~~~~ 407 (589)
+|.++..-|.+++++++|++++.. -...+.+.|+...|-+ +++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666677888888888887654 2334556677666555 3455556778888777777776665
Q ss_pred ccCcHH-HHHHHHHHhHH---hcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHh
Q 007808 408 HMGLVE-EGLSYFQSMAM---DYS--IVPQIEHYGCMVDLLARAGRLAEAVDFVK 456 (589)
Q Consensus 408 ~~g~~~-~A~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 456 (589)
....-+ .=.++++++++ +.+ -.-++.....+...|.+.|++.+|...|-
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 432111 01122222221 112 12356777888899999999999988664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.07 E-value=2.6 Score=30.47 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+.-+..+-++.+...++.|++....+.+++|.|.+++..|.++++-....- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 445667777788878888899999999999999999999999888876653 333455666554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=86.74 E-value=4.8 Score=35.46 Aligned_cols=123 Identities=16% Similarity=0.092 Sum_probs=79.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChH----HHHHHHHHHHh
Q 007808 369 SGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIE----HYGCMVDLLAR 444 (589)
Q Consensus 369 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 444 (589)
..+.+.|+.++|++....-++.. +-|...-..++..+|-.|++++|.+-++...+ +.|+.. .|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 34567889999999888888762 44677777888889999999999988887753 345533 33333332
Q ss_pred cCCHHHHH-HHHhhC--C--CCCCHHHHHHHHHHH--hcCCCHHHHHHHHHHHHccCCCCCcchH
Q 007808 445 AGRLAEAV-DFVKRM--P--IEADAVIWANLLGSC--RVYKNVELAELALERLTELEPKNPANFV 502 (589)
Q Consensus 445 ~g~~~~A~-~~~~~~--~--~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 502 (589)
+... ++|.-- + +.....-...++.+. ...|+.++|.+.-.++.+..|..+...+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~ 138 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence 2222 233321 1 111223334444443 4679999999999999998887665444
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=86.74 E-value=13 Score=31.11 Aligned_cols=159 Identities=9% Similarity=0.081 Sum_probs=92.4
Q ss_pred HccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCCCChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHH
Q 007808 158 FGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSG 237 (589)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~ 237 (589)
++.+..++.......+..+...|.....-.+.+.+..+|...-...+.++...|..+....+.+.+..++..+....+.+
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 99 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVA 99 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33344455555555666666666655555555666666776666667777777766555555555555777777777777
Q ss_pred HHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 007808 238 YANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWV 317 (589)
Q Consensus 238 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 317 (589)
+.+.++.+....+...+..++...-...+.++.+.++. ++...+..+... ++...-...+.++.+.++. .+...
T Consensus 100 L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~~~-~~~~~ 173 (201)
T 3ltj_A 100 LGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALKD----EDGWVRQSAADALGEIGGE-RVRAA 173 (201)
T ss_dssp HHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTTC----SSHHHHHHHHHHHHHHCSH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHcC----CCHHHHHHHHHHHHHhCch-hHHHH
Confidence 77777765555555555556655555556666665543 344555555432 4555555556666666543 33333
Q ss_pred HHHHH
Q 007808 318 HVYAE 322 (589)
Q Consensus 318 ~~~~~ 322 (589)
+..+.
T Consensus 174 L~~~l 178 (201)
T 3ltj_A 174 MEKLA 178 (201)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=84.78 E-value=13 Score=41.26 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=100.7
Q ss_pred HHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------C
Q 007808 202 TIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPE------------------------R 257 (589)
Q Consensus 202 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~ 257 (589)
.++..+...+..+-+.++..-.. .+....-.+..++...|++++|.+.|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 34444555555555554443332 2222333344555566666666666655431 0
Q ss_pred C--chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-c--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhH
Q 007808 258 N--VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFP-N--DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCV 332 (589)
Q Consensus 258 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 332 (589)
+ ..-|..++..+-+.|.++.+++.-...++.....+ + ...|..+.+.+...|++++|...+..+-..... ...
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~c 973 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSC 973 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHH
Confidence 0 12256677778888888888887777666431111 1 124677788888888888888777666654432 334
Q ss_pred HHHHHHHHHhcCC------------hHHHHHHHhhCC------CCCcchHHHHHHHHHhCCChHHHHH-HHHHHHH
Q 007808 333 GNALIDMYAKCGI------------IENAVDVFNSMD------TKDLITWNTIISGLAMHGRGAGALS-LFHEMKN 389 (589)
Q Consensus 333 ~~~l~~~~~~~g~------------~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~m~~ 389 (589)
...|+...+..|. .++..+++..-. ...+.-|..|-.-+...|++.+|-. +|+.+.+
T Consensus 974 Lr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 5555555554443 444445553211 1122335555555667777776544 5565544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.38 E-value=31 Score=33.40 Aligned_cols=195 Identities=9% Similarity=0.008 Sum_probs=110.4
Q ss_pred CCHHHHHHHHhhCCC-----C----CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHH----HHhc
Q 007808 242 GDVEECKRLFEEMPE-----R----NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSA----CARL 308 (589)
Q Consensus 242 ~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~ 308 (589)
|+++.|.+.+-.+.+ . .......++..|...|+++...+.+..+.+..+..+.. ...+++. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 677888777655432 1 23446678888889999998888777665543122222 2233332 2233
Q ss_pred CChhHHHHHHHHHHHc--CCC-----C---ChhHHHHHHHHHHhcCChHHHHHHHhhCCC----C-----CcchHHHHHH
Q 007808 309 GALDFSKWVHVYAEYN--GYQ-----G---NVCVGNALIDMYAKCGIIENAVDVFNSMDT----K-----DLITWNTIIS 369 (589)
Q Consensus 309 ~~~~~a~~~~~~~~~~--~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~l~~ 369 (589)
...+.... ...... .+. . .......|...|...|++.+|.+++..+.. . -+..+...+.
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33332211 111111 111 1 123445678889999999999999887751 1 1245666778
Q ss_pred HHHhCCChHHHHHHHHHHHH----CCCCCCH--hHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHH
Q 007808 370 GLAMHGRGAGALSLFHEMKN----AGEMPDG--ITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLA 443 (589)
Q Consensus 370 ~~~~~~~~~~A~~~~~~m~~----~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 443 (589)
.|...+++.+|..++.+... ....|+. ..+...+..+...+++.+|.+ .|..+...+.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~----------------~y~e~~~~~~ 249 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ----------------YLQEIYQTDA 249 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH----------------HHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH----------------HHHHHHhccc
Confidence 88889999999999888643 2112221 223444445555555555433 2444556666
Q ss_pred hcCCHHHHHHHHh
Q 007808 444 RAGRLAEAVDFVK 456 (589)
Q Consensus 444 ~~g~~~~A~~~~~ 456 (589)
..++.......+.
T Consensus 250 ~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 250 IKSDEAKWKPVLS 262 (445)
T ss_dssp HHSCHHHHHHHHH
T ss_pred ccCCHHHHHHHHH
Confidence 6666655444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.98 E-value=9.9 Score=27.36 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=54.3
Q ss_pred ChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007808 310 ALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKN 389 (589)
Q Consensus 310 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 389 (589)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34455555555554432 11111122344667888999988888888888888876643 467777888888877777
Q ss_pred CCCCCCHhHHH
Q 007808 390 AGEMPDGITFI 400 (589)
Q Consensus 390 ~~~~p~~~~~~ 400 (589)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 55555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.65 E-value=6.7 Score=43.56 Aligned_cols=63 Identities=6% Similarity=-0.165 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc-----chHHHHHHHhhcCChHHHHHHHHHhhhCC
Q 007808 466 IWANLLGSCRVYKNVELAELALERLTELEPKNPA-----NFVMLSNIYGDLGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 466 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 528 (589)
-|..++..+.+.|.++.+.+..+.+++..+.+.. .|..+.+.+...|+|++|...+-.+.+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 3444555556666666666666666653322111 34555555666666666666655554433
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.35 E-value=11 Score=27.25 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 007808 311 LDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNA 390 (589)
Q Consensus 311 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 390 (589)
.++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-.|-. .+.|-.+++...+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555554432 11111122334567888888888888888888888876644 4557777777777777766
Q ss_pred CCCCCHhHHH
Q 007808 391 GEMPDGITFI 400 (589)
Q Consensus 391 ~~~p~~~~~~ 400 (589)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 55544443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.95 E-value=7 Score=30.05 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
|.-+...-++.+....+.|++......+.+|.+.+++..|..+++.+..+.+ +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445666777777788999999999999999999999999999999876544 44556777664
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.10 E-value=50 Score=33.49 Aligned_cols=170 Identities=9% Similarity=-0.058 Sum_probs=97.0
Q ss_pred CChHHHHHHHhhCCC---CCcc----hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHH
Q 007808 344 GIIENAVDVFNSMDT---KDLI----TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGL 416 (589)
Q Consensus 344 g~~~~A~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (589)
.+.+.|...+....+ .+.. .+..++..+...+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 478899999876642 1222 2333333344455456777777776653 344444444555555779999999
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 417 SYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
..|+.+... ......-.-.+..++...|+.++|..+|+++.... +|..++.+ .+.|..-. . ......+.
T Consensus 306 ~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~---~fYg~lAa-~~Lg~~~~-~----~~~~~~~~ 374 (618)
T 1qsa_A 306 TWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR---GFYPMVAA-QRIGEEYE-L----KIDKAPQN 374 (618)
T ss_dssp HHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---SHHHHHHH-HHTTCCCC-C----CCCCCCSC
T ss_pred HHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---ChHHHHHH-HHcCCCCC-C----CCCCCChh
Confidence 999998542 11223334457788889999999999999984222 33333322 12232100 0 00011111
Q ss_pred CCc-----chHHHHHHHhhcCChHHHHHHHHHhhh
Q 007808 497 NPA-----NFVMLSNIYGDLGRWKDVARIKVAMRD 526 (589)
Q Consensus 497 ~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 526 (589)
... .-...+..+...|...+|...+..+.+
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 111 123345667888999998888777653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.43 E-value=6.3 Score=30.29 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+.-+..+-++.+...++.|++......+++|.+.+|+..|.++++-.+..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344567777888888899999999999999999999999999999887653 444556776654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 589 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-07 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (125), Expect = 6e-08
Identities = 47/355 (13%), Positives = 112/355 (31%), Gaps = 16/355 (4%)
Query: 174 NGYISCGDIVSARCLFELAPERD---VILWNTIVSGYIDVRNMIEARKLFDQMPKKD--- 227
+ GD +A ++ + + S + R + + K++
Sbjct: 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL 66
Query: 228 VISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLT 287
+++ + + Y G ++E + +G I A ++ A + ++
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 288 EGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIE 347
+ P+ + + L + + L ++ G I
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 348 NAVDVFN---SMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILC 404
A+ F ++D L + + + L A++ + + + + C
Sbjct: 187 LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLAC 245
Query: 405 ACTHMGLVEEGLSYFQSMAMDYSIVPQI-EHYGCMVDLLARAGRLAEAVDFVKR--MPIE 461
GL++ + ++ + P + Y + + L G +AEA D
Sbjct: 246 VYYEQGLIDLAIDTYRRA---IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 462 ADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKD 516
A NL R N+E A + E+ P+ A L+++ G+ ++
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 3e-07
Identities = 44/385 (11%), Positives = 108/385 (28%), Gaps = 20/385 (5%)
Query: 143 ELYSTGKAIEA--AYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPERD---V 197
Y G A + N V + + + C + + LA +++
Sbjct: 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA 67
Query: 198 ILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLF---EEM 254
++ + + Y + + EA + + + + ++ A + +
Sbjct: 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127
Query: 255 PERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFS 314
+ N + + +A L PN A + L +
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187
Query: 315 KWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFN---SMDTKDLITWNTIISGL 371
H + L ++ + I + AV + S+ + +
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247
Query: 372 AMHGRGAGALSLFHE-MKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVP 430
G A+ + ++ PD + A G V E + +
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN--ALKEKGSVAEAEDCYNTALRLCP--T 303
Query: 431 QIEHYGCMVDLLARAGRLAEAVDFVKRMPIEAD---AVIWANLLGSCRVYKNVELAELAL 487
+ + ++ G + EAV ++ +E A +NL + ++ A +
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKA-LEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 488 ERLTELEPKNPANFVMLSNIYGDLG 512
+ + P + + N ++
Sbjct: 363 KEAIRISPTFADAYSNMGNTLKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 589 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.74 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.39 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.27 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.23 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.17 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.16 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.07 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.04 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.01 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.93 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.93 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.93 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.9 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.84 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.83 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.83 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.82 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.82 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.79 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.77 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.77 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.74 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.7 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.64 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.6 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.6 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.51 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.38 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.31 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.31 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.09 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.05 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.98 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.91 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.72 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.72 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.49 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.4 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.11 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.52 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.13 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.72 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.03 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.69 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.4 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.2e-25 Score=217.21 Aligned_cols=369 Identities=14% Similarity=0.056 Sum_probs=288.9
Q ss_pred HHHHHhCCCHHHHHHHHHhCCC--C-ChhHHHHHHHHHhcCCChHHHHHHhcccCC--C-ChhhHHHHHHHHHhcCCHHH
Q 007808 173 INGYISCGDIVSARCLFELAPE--R-DVILWNTIVSGYIDVRNMIEARKLFDQMPK--K-DVISWNTMLSGYANNGDVEE 246 (589)
Q Consensus 173 ~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 246 (589)
...+.+.|++++|.+.++++.+ | +...+..+..++.+.|++++|...++++.+ | +..++..+...|.+.|++++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence 3445566666666666665532 2 456677777777777777777777777654 3 45677778888888888888
Q ss_pred HHHHHhhCCC---CCchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007808 247 CKRLFEEMPE---RNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEY 323 (589)
Q Consensus 247 A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 323 (589)
|...+....+ .+...+..........+....+........... .................+....+...+.....
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccchhhhhHHHHHHhhc
Confidence 8888877764 233444445555556666666666666655554 33444445555666677777777777777766
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHH
Q 007808 324 NGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFI 400 (589)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 400 (589)
.. +.+...+..+...+...|++++|...+++.. +.+...|..+...+...|++++|+..+++....+ +.+...+.
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 54 4566777888888999999999999988765 3356688889999999999999999999998853 44667788
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHhcCC
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANLLGSCRVYK 478 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g 478 (589)
.+...+.+.|++++|...|+++.+. .+.+...+..+..+|...|++++|++.++.. ..+.+...+..+...+...|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence 8889999999999999999998752 2334778889999999999999999999987 23457788888889999999
Q ss_pred CHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHH
Q 007808 479 NVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSI 558 (589)
Q Consensus 479 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 558 (589)
++++|++.|+++++++|+++.++..++.+|.+.|++++|++.++++. +++|+++.+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al------------------------~l~P~~~~a 375 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI------------------------RISPTFADA 375 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH------------------------TTCTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HhCCCCHHH
Confidence 99999999999999999999999999999999999999999999986 789999999
Q ss_pred HHHHHHHHHHccc
Q 007808 559 VRAEANMIKLLPQ 571 (589)
Q Consensus 559 ~~~l~~~~~~~~~ 571 (589)
+..||++|.++|+
T Consensus 376 ~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 376 YSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999985
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.8e-23 Score=199.76 Aligned_cols=249 Identities=10% Similarity=0.057 Sum_probs=201.2
Q ss_pred CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHH
Q 007808 258 NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALI 337 (589)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 337 (589)
...............+....+...+....... +.+...+..+...+...|+++.|...+..+.+.. +.+...+..+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 210 (388)
T d1w3ba_ 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLG 210 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccccccccccccccchhhhhHHHHHHhhccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHh
Confidence 33444445556666777777777777776654 3345566667777777888888888888777764 44666777788
Q ss_pred HHHHhcCChHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHH
Q 007808 338 DMYAKCGIIENAVDVFNSMD---TKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVE 413 (589)
Q Consensus 338 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~ 413 (589)
..+...|++++|...+++.. ..+...+..+...+.+.|++++|+..|++..+. .| +..++..+...+...|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~ 288 (388)
T d1w3ba_ 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHH
T ss_pred hhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 88888888888888887665 345567778888999999999999999999884 45 5678888999999999999
Q ss_pred HHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 414 EGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
+|.+.++.... ..+.+...+..+..++.+.|++++|++.++++ ...| +...+..+..++.+.|++++|+..|++++
T Consensus 289 ~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 289 EAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998876 34566778889999999999999999999987 5566 46778888899999999999999999999
Q ss_pred ccCCCCCcchHHHHHHHhhcCC
Q 007808 492 ELEPKNPANFVMLSNIYGDLGR 513 (589)
Q Consensus 492 ~~~p~~~~~~~~l~~~~~~~g~ 513 (589)
+++|+++.+|..++.+|.+.|+
T Consensus 367 ~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999886
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.6e-16 Score=149.77 Aligned_cols=277 Identities=12% Similarity=-0.032 Sum_probs=193.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 007808 262 WNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYA 341 (589)
Q Consensus 262 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (589)
+-.....+.+.|++++|+..|+++++.. +-+...+..+..++...|+++.|...+.++.+.. |.+...+..++.+|.
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc
Confidence 3446677888999999999999988865 3346677788888888888888888888887765 445666777777777
Q ss_pred hcCChHHHHHHHhhCCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHH
Q 007808 342 KCGIIENAVDVFNSMDTKDLI---TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSY 418 (589)
Q Consensus 342 ~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 418 (589)
..|++++|.+.++.....++. .+....... ...+.......+..+...+.+.+|...
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHH
Confidence 777777777776654421110 000000000 000000111122233445677888888
Q ss_pred HHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCC
Q 007808 419 FQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPK 496 (589)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 496 (589)
+.++.......++...+..+...+...|++++|+..+++. ...| +...|..+..++...|++++|++.|+++++++|+
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 238 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhc
Confidence 8887765444556778888999999999999999999987 3344 5778888999999999999999999999999999
Q ss_pred CCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCC
Q 007808 497 NPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNH 574 (589)
Q Consensus 497 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 574 (589)
++.++..++.+|.+.|++++|++.+++..+. .|+- ... .....+....++..++.++..+|+.+.
T Consensus 239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~--~~~---------~~~~~~~~~~~~~~l~~al~~~~~~d~ 303 (323)
T d1fcha_ 239 YIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKS--RGP---------RGEGGAMSENIWSTLRLALSMLGQSDA 303 (323)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC-----------------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcC--hhh---------hhhhHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999998531 1110 000 002233445567788889888887643
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7.6e-15 Score=137.98 Aligned_cols=267 Identities=14% Similarity=0.003 Sum_probs=194.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-CchhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh
Q 007808 231 WNTMLSGYANNGDVEECKRLFEEMPE--R-NVFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR 307 (589)
Q Consensus 231 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 307 (589)
.-.....+.+.|++++|...|+++.+ | +..+|..+..++...|++++|+..|.+.++.. +-+...+..+...+..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--cccccccccccccccc
Confidence 34567788999999999999999875 3 56789999999999999999999999999865 3456778888899999
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 007808 308 LGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEM 387 (589)
Q Consensus 308 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 387 (589)
.|+++.|...+..+...... ............. ..+.......+..+...+.+.+|.+.+++.
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccc-hHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999998875421 1111100000000 001111111223344556678899999888
Q ss_pred HHCCC-CCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CH
Q 007808 388 KNAGE-MPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DA 464 (589)
Q Consensus 388 ~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 464 (589)
.+... .++...+..+...+...|++++|...+++..... +-+...|..++.+|.+.|++++|++.++++ ...| +.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccH
Confidence 76422 2345677888889999999999999999987532 334778889999999999999999999987 4455 56
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcch-----------HHHHHHHhhcCChHHHH
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANF-----------VMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-----------~~l~~~~~~~g~~~~A~ 518 (589)
..+..+..+|.+.|++++|++.|+++++++|+++..+ ..+..++...|+.+.+.
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7788899999999999999999999999998876543 34555555566655443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2e-12 Score=119.90 Aligned_cols=214 Identities=9% Similarity=0.067 Sum_probs=161.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCC--C-CcchHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCC-CHhHHHHHHH
Q 007808 330 VCVGNALIDMYAKCGIIENAVDVFNSMDT--K-DLITWNTIISGLAMHG-RGAGALSLFHEMKNAGEMP-DGITFIGILC 404 (589)
Q Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~ 404 (589)
...++.+...+.+.+.+++|+++++++.+ | +...|+....++...| ++++|+..+++..+. .| +..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhH
Confidence 44566677778888888999998888763 3 5567788888877766 488899999888874 44 5677888888
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCC---
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKN--- 479 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--- 479 (589)
.+.+.|++++|++.++++++. .+.+...|..++..+.+.|++++|++.++++ .+.| +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 888889999999998888753 2345778888888888999999999888887 4455 56677776666554443
Q ss_pred ---HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCch
Q 007808 480 ---VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRK 556 (589)
Q Consensus 480 ---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 556 (589)
+++|++.+.++++++|++..++..++.++...| .+++.+.+++..+ +..+++++
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~----------------------l~~~~~~~ 255 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD----------------------LQPSHSSP 255 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH----------------------HTTTCCCH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH----------------------hCCCcCCH
Confidence 678888889999999998888888888776554 5777777777641 12344567
Q ss_pred HHHHHHHHHHHHcc
Q 007808 557 SIVRAEANMIKLLP 570 (589)
Q Consensus 557 ~~~~~l~~~~~~~~ 570 (589)
.++..++.+|....
T Consensus 256 ~~~~~l~~~y~~~~ 269 (315)
T d2h6fa1 256 YLIAFLVDIYEDML 269 (315)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888887654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=4.5e-11 Score=110.56 Aligned_cols=224 Identities=12% Similarity=0.105 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHhhCC---CCCcchHHHHHHH
Q 007808 295 DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCG-IIENAVDVFNSMD---TKDLITWNTIISG 370 (589)
Q Consensus 295 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~ 370 (589)
...++.+...+.+.+..++|...++.+++.+ |.+...|+....++...| ++++|+..++... +.+..+|..+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence 3456667777888999999999999999986 667888898998888876 4899999999876 3467899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCC--
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGR-- 447 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 447 (589)
+.+.|++++|++.++++.+. .| +...|..+...+...|++++|++.++++++. -+.+...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccc
Confidence 99999999999999999984 55 6788999999999999999999999999863 23357788888777777665
Q ss_pred ----HHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc--chHHHHHHHhhc--CChHHH
Q 007808 448 ----LAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA--NFVMLSNIYGDL--GRWKDV 517 (589)
Q Consensus 448 ----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~~~~A 517 (589)
+++|++.+.++ ...| +...|..+...+... ..+++.+.+++++++.|+... .+..++.+|... +..+.+
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 57888888876 4455 567777776666554 468899999999998887543 344556665432 444445
Q ss_pred HHHHHHh
Q 007808 518 ARIKVAM 524 (589)
Q Consensus 518 ~~~~~~~ 524 (589)
...+++.
T Consensus 277 ~~~~~ka 283 (315)
T d2h6fa1 277 EDILNKA 283 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=4.9e-10 Score=105.87 Aligned_cols=261 Identities=15% Similarity=0.001 Sum_probs=177.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--C---CChhHHHHH
Q 007808 265 LIGGYANNGLFFEVLDAFKRMLTEGRVFPN---DATIVTVLSACARLGALDFSKWVHVYAEYNGY--Q---GNVCVGNAL 336 (589)
Q Consensus 265 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l 336 (589)
....+...|++++|++++++.++..+-.++ ...+..+..++...|++++|...+..+.+... . .....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 345566777777777777777664311111 22455566667777777777777776654321 1 112344556
Q ss_pred HHHHHhcCChHHHHHHHhhCC-------CCC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC----CCHhHHHH
Q 007808 337 IDMYAKCGIIENAVDVFNSMD-------TKD----LITWNTIISGLAMHGRGAGALSLFHEMKNAGEM----PDGITFIG 401 (589)
Q Consensus 337 ~~~~~~~g~~~~A~~~~~~~~-------~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~----p~~~~~~~ 401 (589)
...+...|++..+...+.... .+. ...+..+...+...|+++.+...++........ .....+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 667777788877777766543 111 124556677888999999999999888763221 12334555
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-----CHHHHHHH
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-----IEHYGCMVDLLARAGRLAEAVDFVKRMP-IEA-----DAVIWANL 470 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l 470 (589)
....+...+++..+...+.+.........+ ...+..+...+...|++++|...+++.. ..| ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 666777889999888887766443222111 2345566778889999999999998872 222 23456667
Q ss_pred HHHHhcCCCHHHHHHHHHHHHc------cCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 471 LGSCRVYKNVELAELALERLTE------LEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 471 ~~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..++...|++++|...+++++. ..|....++..++.+|.+.|++++|.+.+++..
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7889999999999999999875 345556788999999999999999999999875
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=4e-12 Score=119.48 Aligned_cols=259 Identities=9% Similarity=-0.037 Sum_probs=154.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCcHHH-HHH---HHHHH-------HhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 007808 274 LFFEVLDAFKRMLTEGRVFPNDAT-IVT---VLSAC-------ARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAK 342 (589)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~p~~~~-~~~---l~~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (589)
..++|++++.+.++.. |+..+ |+. ++... ...|.++++...++.+.+.. |.+...+..+..++..
T Consensus 44 ~~~~al~~~~~~l~~~---P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 44 LDESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp CSHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 3466666776666643 44332 221 11111 22233556666666666554 4455555555555555
Q ss_pred cC--ChHHHHHHHhhCC---CCCcchHH-HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHH
Q 007808 343 CG--IIENAVDVFNSMD---TKDLITWN-TIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGL 416 (589)
Q Consensus 343 ~g--~~~~A~~~~~~~~---~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 416 (589)
.+ ++++|...++++. .++...+. .....+...+.+++|+..++++.+.. +-+...|..+...+...|++++|.
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence 44 3566666666654 22333433 33345556677777777777766642 224556666666777777766665
Q ss_pred HHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 007808 417 SYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM--PIEADAVIWANLLGSCRVYKNVELAELALERLTELE 494 (589)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (589)
..++..... .|+. ..+...+...+..+++...+.+. ..+++...+..+...+...|+..+|...+.+++..+
T Consensus 199 ~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 199 PQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp SCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 554444321 1111 11223344555556666655554 122233334445566666778888888888888888
Q ss_pred CCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 495 PKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 495 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
|++..++..++.+|.+.|++++|++.++++. +++|+++..+..|++.+.
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai------------------------~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLK------------------------AVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHH------------------------HHCGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH------------------------HHCcccHHHHHHHHHHHh
Confidence 8888888888888888888888888888875 778888888888877765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=5.6e-11 Score=107.02 Aligned_cols=115 Identities=14% Similarity=-0.019 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007808 274 LFFEVLDAFKRMLTEGRVFPN--DATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVD 351 (589)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (589)
+.+.++.-+++........+. ..++..+..++.+.|++++|...|+++++.. |.+..++..+..+|.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 345566666666554311111 1234444555556666666666666655543 3344555555555555555555555
Q ss_pred HHhhCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 007808 352 VFNSMDT---KDLITWNTIISGLAMHGRGAGALSLFHEMKN 389 (589)
Q Consensus 352 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 389 (589)
.|+++.+ .+..++..+..+|...|++++|+..|++..+
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5554431 1333444555555555555555555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=9.8e-11 Score=90.28 Aligned_cols=107 Identities=12% Similarity=0.112 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh
Q 007808 437 CMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRW 514 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 514 (589)
.-++.+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3467788999999999999988 3444 6778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHH
Q 007808 515 KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIK 567 (589)
Q Consensus 515 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 567 (589)
++|+..+++.. +++|+++.++..++++..
T Consensus 88 ~~A~~~~~~a~------------------------~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGL------------------------KHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHH------------------------TTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------------HhCCCCHHHHHHHHHHhC
Confidence 99999999986 789999999999998864
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=3.7e-10 Score=106.76 Aligned_cols=264 Identities=10% Similarity=-0.047 Sum_probs=194.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCCC-----CC----cchHH
Q 007808 299 VTVLSACARLGALDFSKWVHVYAEYNGYQGN----VCVGNALIDMYAKCGIIENAVDVFNSMDT-----KD----LITWN 365 (589)
Q Consensus 299 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~ 365 (589)
......+...|++++|...+++..+.....+ ...+..+..+|...|++++|...|++..+ ++ ...+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3345667899999999999999988642222 24667788899999999999999987652 11 23566
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH----CCCCCC---HhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCC---CCChHHH
Q 007808 366 TIISGLAMHGRGAGALSLFHEMKN----AGEMPD---GITFIGILCACTHMGLVEEGLSYFQSMAMDYSI---VPQIEHY 435 (589)
Q Consensus 366 ~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~ 435 (589)
.+...+...|++..+...+.+... .+..+. ...+..+...+...|+++.+...+......... ......+
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 175 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 175 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence 677788999999999999988654 222221 234556777888999999999999888653221 1224455
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC----C-CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc----chH
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRM----P-IEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPA----NFV 502 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~----~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~ 502 (589)
..+...+...+.+.++...+.+. . .... ...+......+...|++++|...++++.+..|.+.. .+.
T Consensus 176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 255 (366)
T d1hz4a_ 176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 255 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 66677888899998888777654 1 1111 233455557788999999999999999998876543 345
Q ss_pred HHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHh
Q 007808 503 MLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 503 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
.++.++...|++++|...++++....- ....+|+...++..+|++|...|+.++|+..+.
T Consensus 256 ~la~~~~~~g~~~~A~~~~~~al~~~~------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 315 (366)
T d1hz4a_ 256 NIARAQILLGEFEPAEIVLEELNENAR------------------SLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 315 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHh------------------hcccChHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 689999999999999999998852110 124668888999999999999999998887654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=3.6e-10 Score=101.58 Aligned_cols=94 Identities=11% Similarity=-0.195 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007808 261 SWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMY 340 (589)
Q Consensus 261 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (589)
+|..+..+|.+.|++++|+..|++.++.. +-+..++..+..++.+.|++++|...|+++.+.. |.+...+..+..+|
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 45555666666666666666666666643 2344556666666666666666666666666654 33445556666666
Q ss_pred HhcCChHHHHHHHhhCC
Q 007808 341 AKCGIIENAVDVFNSMD 357 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~ 357 (589)
...|++++|.+.|+...
T Consensus 116 ~~~g~~~~A~~~~~~al 132 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFY 132 (259)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 66666666666666544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=4.3e-11 Score=112.26 Aligned_cols=259 Identities=9% Similarity=-0.036 Sum_probs=182.0
Q ss_pred CCHHHHHHHHhhCCC--CCc-hhHHHHHHH----------HHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhc
Q 007808 242 GDVEECKRLFEEMPE--RNV-FSWNGLIGG----------YANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARL 308 (589)
Q Consensus 242 ~~~~~A~~~~~~~~~--~~~-~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 308 (589)
+..++|.++++.+.+ |+. ..|+..-.. +...|++++|+..++...+.. +-+...+.....++...
T Consensus 43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHh
Confidence 334667777766654 332 334332222 233455788999999988865 33555666666666555
Q ss_pred C--ChhHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCChHHHHHHHhhCCCC---CcchHHHHHHHHHhCCChHHHHH
Q 007808 309 G--ALDFSKWVHVYAEYNGYQGNVCVG-NALIDMYAKCGIIENAVDVFNSMDTK---DLITWNTIISGLAMHGRGAGALS 382 (589)
Q Consensus 309 ~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 382 (589)
+ +++++...+..+.+.. +++...+ ......+...+..++|+..++.+.+. +...|+.+..++.+.|++++|..
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 4 4788888999888875 3344444 44557777889999999999988754 55678888899999999988876
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCC
Q 007808 383 LFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIE 461 (589)
Q Consensus 383 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 461 (589)
.+++..+. .|+. ......+...+..+++...+..... ..+++...+..++..+...|+.++|...+.+. ...
T Consensus 200 ~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 200 QGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp CCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 66554442 2222 1223334455666777777777754 23344555666778888899999999999887 455
Q ss_pred C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 462 A-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 462 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
| +...+..+..++...|++++|.+.++++++++|++...|..|...+.-
T Consensus 273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 5 446677788899999999999999999999999988888888887764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=1e-08 Score=94.25 Aligned_cols=161 Identities=7% Similarity=0.039 Sum_probs=78.8
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHH
Q 007808 362 ITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDL 441 (589)
Q Consensus 362 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (589)
..|...+..+...|++++|..+|+++.+.........|...+..+.+.|+.+.|.++|+++++. .+.+...|...+..
T Consensus 100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--~~~~~~~~~~~a~~ 177 (308)
T d2onda1 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 3444445555555555555555555554211111234455555555555555555555555432 11222333332222
Q ss_pred -HHhcCCHHHHHHHHhhC-C-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc----chHHHHHHHhhcCCh
Q 007808 442 -LARAGRLAEAVDFVKRM-P-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPA----NFVMLSNIYGDLGRW 514 (589)
Q Consensus 442 -~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~ 514 (589)
+...|+.+.|..+|+.+ . .+.+...|...+..+...|+++.|..+|+++++..|.++. .|...+..-...|+.
T Consensus 178 e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~ 257 (308)
T d2onda1 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence 22235555555555555 1 2223455555555555566666666666666555443332 344445544555666
Q ss_pred HHHHHHHHHh
Q 007808 515 KDVARIKVAM 524 (589)
Q Consensus 515 ~~A~~~~~~~ 524 (589)
+.+..+++++
T Consensus 258 ~~~~~~~~r~ 267 (308)
T d2onda1 258 ASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665555
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=5.1e-10 Score=91.84 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=93.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCCh
Q 007808 437 CMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRW 514 (589)
Q Consensus 437 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 514 (589)
..+..|.+.|++++|+..|+++ ...| +...|..+..+|...|++++|+..|+++++++|+++.+|..++.++...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456788999999999999887 3444 5677888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 515 KDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 515 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
++|+..+++.. +++|+++.++..++.+...+++
T Consensus 95 ~eA~~~~~~a~------------------------~~~p~~~~~~~~l~~~~~~~~~ 127 (159)
T d1a17a_ 95 RAALRDYETVV------------------------KVKPHDKDAKMKYQECNKIVKQ 127 (159)
T ss_dssp HHHHHHHHHHH------------------------HHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------------------------HcCCCCHHHHHHHHHHHHHHHH
Confidence 99999998885 7889999998888877654443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=1.1e-08 Score=94.15 Aligned_cols=220 Identities=10% Similarity=-0.008 Sum_probs=170.3
Q ss_pred hHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC--------------ChhHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 007808 275 FFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLG--------------ALDFSKWVHVYAEYNGYQGNVCVGNALIDMY 340 (589)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (589)
.+.+..+|++++..- +.+...|...+.-+...+ ..+.+..+++++.+...+.+...+...+..+
T Consensus 32 ~~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 32 TKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456888999998863 445566665555554433 2467888999988765666777888889999
Q ss_pred HhcCChHHHHHHHhhCCC--C-C-cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HhccCcHHHH
Q 007808 341 AKCGIIENAVDVFNSMDT--K-D-LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCA-CTHMGLVEEG 415 (589)
Q Consensus 341 ~~~g~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A 415 (589)
...|+++.|..+|+++.+ | + ...|...+..+.+.|+.+.|.++|+++.+.+ +.+...|...+.. +...|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHH
Confidence 999999999999998753 2 2 2368889999999999999999999998864 3344444444433 3456899999
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC----CCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHH
Q 007808 416 LSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM----PIEAD--AVIWANLLGSCRVYKNVELAELALER 489 (589)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 489 (589)
..+|+.+...+ +.+...|..+++.+.+.|++++|..+|++. +.+|+ ...|...+..-...|+.+.+..++++
T Consensus 189 ~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998753 455788999999999999999999999986 23443 45788888777888999999999999
Q ss_pred HHccCCCCCc
Q 007808 490 LTELEPKNPA 499 (589)
Q Consensus 490 ~~~~~p~~~~ 499 (589)
+.+..|....
T Consensus 267 ~~~~~~~~~~ 276 (308)
T d2onda1 267 RFTAFREEYE 276 (308)
T ss_dssp HHHHTTTTTS
T ss_pred HHHHCccccc
Confidence 9999998654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=4.1e-10 Score=95.37 Aligned_cols=134 Identities=14% Similarity=0.037 Sum_probs=107.9
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH
Q 007808 439 VDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
...+...|++++|++.|+++. +|+..+|..+..++...|++++|++.|+++++++|+++.+|..++.+|.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 566789999999999999885 6788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhh
Q 007808 519 RIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
+.+++..... ++...+... ..++..++....++..+|.+|..+|+.++|++.+..
T Consensus 91 ~~~~kAl~~~----~~n~~~~~~----~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~ 145 (192)
T d1hh8a_ 91 KDLKEALIQL----RGNQLIDYK----ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 145 (192)
T ss_dssp HHHHHHHHTT----TTCSEEECG----GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhC----ccCchHHHH----HhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999985321 221111110 012233445567888999999999999888876543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=1.6e-09 Score=89.58 Aligned_cols=85 Identities=9% Similarity=-0.069 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
.+|+.+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..++++.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al------------------- 123 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL------------------- 123 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHH-------------------
Confidence 3566778889999999999999999999999999999999999999999999999999986
Q ss_pred eeeccccCCCchHHHHHHHHHHHHcccCC
Q 007808 545 MLGCLSRELDRKSIVRAEANMIKLLPQNN 573 (589)
Q Consensus 545 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 573 (589)
+++|+++.+...++.++..+++..
T Consensus 124 -----~l~P~n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 124 -----QLYPNNKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp -----HHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred -----HhCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999987776553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.6e-09 Score=83.40 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCC---HHHHHHHHHHHHccCCCC--CcchHHHHHHH
Q 007808 436 GCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKN---VELAELALERLTELEPKN--PANFVMLSNIY 508 (589)
Q Consensus 436 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 508 (589)
..+++.+...+++++|.+.|++. .. +.+..++..+..++.+.++ +++|+.+++++++.+|.+ +.++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 35667777888888888888877 33 3466777777788776544 456888899988887753 34788899999
Q ss_pred hhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 509 GDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 509 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
.+.|++++|++.++++. +++|+++.+...++.|..++++
T Consensus 83 ~~~g~~~~A~~~~~~aL------------------------~~~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLL------------------------QTEPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHTTCHHHHHHHHHHHH------------------------HHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH------------------------HhCcCCHHHHHHHHHHHHHHcC
Confidence 99999999999988885 7889999998888888877654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=5.5e-10 Score=95.95 Aligned_cols=95 Identities=15% Similarity=0.071 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHH
Q 007808 430 PQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNI 507 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 507 (589)
|+...+...+..|.+.|++++|+..|+++ ...| +...|..+..+|.+.|++++|+..|+++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33333444444444444444444444443 2222 334444444445555555555555555555555544455555555
Q ss_pred HhhcCChHHHHHHHHHh
Q 007808 508 YGDLGRWKDVARIKVAM 524 (589)
Q Consensus 508 ~~~~g~~~~A~~~~~~~ 524 (589)
|.+.|++++|+..++++
T Consensus 82 ~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 82 QLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 55555555555554444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=8.7e-10 Score=94.66 Aligned_cols=97 Identities=6% Similarity=-0.130 Sum_probs=90.5
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeee
Q 007808 461 EADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEV 540 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 540 (589)
.|+...+...+..+.+.|++++|+..|+++++++|+++.+|..++.+|.+.|++++|+..++++.
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al--------------- 65 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL--------------- 65 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---------------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---------------
Confidence 37777888888999999999999999999999999999999999999999999999999999985
Q ss_pred CCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhh
Q 007808 541 NEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVV 581 (589)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 581 (589)
+++|+++.++..+|.+|..+|+.++|+..+..
T Consensus 66 ---------~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 66 ---------ELDGQSVKAHFFLGQCQLEMESYDEAIANLQR 97 (201)
T ss_dssp ---------TSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78999999999999999999999998877653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.90 E-value=7.7e-09 Score=83.71 Aligned_cols=83 Identities=12% Similarity=0.002 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
.++..+..+|.+.|++++|++.++++++++|.++.+|..++.+|...|++++|+..+++..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al------------------- 128 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA------------------- 128 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-------------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHH-------------------
Confidence 4667788899999999999999999999999999999999999999999999999999986
Q ss_pred eeeccccCCCchHHHHHHHHHHHHccc
Q 007808 545 MLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 545 ~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
+++|+|+.+...++.+..++++
T Consensus 129 -----~l~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 129 -----SLNPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp -----HHSTTCHHHHHHHHHHHHHHHH
T ss_pred -----HhCCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=5.4e-08 Score=88.42 Aligned_cols=159 Identities=11% Similarity=-0.027 Sum_probs=115.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC----hHHHHH
Q 007808 367 IISGLAMHGRGAGALSLFHEMKNA----GEMP-DGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGC 437 (589)
Q Consensus 367 l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ 437 (589)
....|...|++++|.+.|.++.+. +-.+ -..+|..+..+|.+.|++++|.+.+++...-..-..+ ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 456677778888888887776552 1112 1346778888888999999999988876542211122 345666
Q ss_pred HHHHHHh-cCCHHHHHHHHhhCC----CCCC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc-------h
Q 007808 438 MVDLLAR-AGRLAEAVDFVKRMP----IEAD----AVIWANLLGSCRVYKNVELAELALERLTELEPKNPAN-------F 501 (589)
Q Consensus 438 l~~~~~~-~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~ 501 (589)
++..|.. .|++++|++.++++. ...+ ..++..+...+...|++++|...|+++....|.++.. +
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6777754 699999999988761 1111 3456777889999999999999999999988876533 4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhh
Q 007808 502 VMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 502 ~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
...+.++...|+++.|.+.+++..
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 566777888999999999999985
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.83 E-value=1.9e-09 Score=82.05 Aligned_cols=87 Identities=20% Similarity=0.068 Sum_probs=52.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChH
Q 007808 438 MVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWK 515 (589)
Q Consensus 438 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 515 (589)
++..+.+.|++++|+..|+++ ...| +...|..+..++.+.|++++|+..++++++++|+++.++..++.+|...|+++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 345555666666666666655 2333 35555555566666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHh
Q 007808 516 DVARIKVAM 524 (589)
Q Consensus 516 ~A~~~~~~~ 524 (589)
+|++.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.83 E-value=6.1e-09 Score=86.15 Aligned_cols=86 Identities=9% Similarity=-0.011 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCC
Q 007808 463 DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNE 542 (589)
Q Consensus 463 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (589)
....+..+..++.+.|++++|+..++++++++|+++.+|..++.+|.+.|++++|+..++++.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al----------------- 138 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ----------------- 138 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHH-----------------
Confidence 345667778889999999999999999999999999999999999999999999999999986
Q ss_pred eeeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 543 VVMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+++|+++.+...|+.++..+.+.
T Consensus 139 -------~l~p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 139 -------EIAPEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp -------HHCTTCHHHHHHHHHHHHHHHHH
T ss_pred -------HhCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999998776554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2.2e-08 Score=76.68 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=88.5
Q ss_pred HHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CC-CCCHHHHHHHHHHHhcCCC
Q 007808 402 ILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PI-EADAVIWANLLGSCRVYKN 479 (589)
Q Consensus 402 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~ 479 (589)
-...+...|++++|+..|+++++. .+.+...|..+..+|.+.|++++|+..++++ .+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 456677889999999999988763 2345778888999999999999999999887 33 3467888889999999999
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
+++|+..|+++++++|+++.++..+.++-.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999988888777654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=7.3e-08 Score=87.55 Aligned_cols=191 Identities=10% Similarity=-0.009 Sum_probs=125.5
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC-----CC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CC--CHhHHH
Q 007808 335 ALIDMYAKCGIIENAVDVFNSMDT-----KD----LITWNTIISGLAMHGRGAGALSLFHEMKNAGE---MP--DGITFI 400 (589)
Q Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p--~~~~~~ 400 (589)
.....|...|++++|.+.|.+..+ .+ ..+|..+..+|.+.|++++|++.+++..+... .+ ...++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345566677777777777765542 11 24677788888889999999888887654210 11 133455
Q ss_pred HHHHHHh-ccCcHHHHHHHHHHhHHhcCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCC-------CH-HH
Q 007808 401 GILCACT-HMGLVEEGLSYFQSMAMDYSIVPQ----IEHYGCMVDLLARAGRLAEAVDFVKRMP-IEA-------DA-VI 466 (589)
Q Consensus 401 ~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-------~~-~~ 466 (589)
.+...|. ..|++++|.+.++++..-.....+ ..++..++..|.+.|++++|++.++++. ..| .. ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6666664 469999999999887542111111 3457788999999999999999998861 111 11 22
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc-----hHHHHHHHhh--cCChHHHHHHHHHhh
Q 007808 467 WANLLGSCRVYKNVELAELALERLTELEPKNPAN-----FVMLSNIYGD--LGRWKDVARIKVAMR 525 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~~A~~~~~~~~ 525 (589)
+...+..+...|+++.|...++++.+++|..+.. +..++.++.. .+++++|+..|+++.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 3444556678999999999999999999864432 3455555554 356899999887764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=1.4e-07 Score=79.38 Aligned_cols=140 Identities=10% Similarity=-0.048 Sum_probs=95.3
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhccCcHHHH
Q 007808 337 IDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMP-DGITFIGILCACTHMGLVEEG 415 (589)
Q Consensus 337 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 415 (589)
...+...|+++.|++.|.++.+++..+|..+..+|...|++++|++.|++.++. .| +...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence 445667788888888888887777778888888888888888888888888874 44 556777788888888888888
Q ss_pred HHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccC
Q 007808 416 LSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRMPIEAD-AVIWANLLGSCRVYKNVELAELALERLTELE 494 (589)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 494 (589)
...|++.+.. .+++... .|...|. ...++ ..++..+..++.+.|++++|.+.+++++++.
T Consensus 90 ~~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 90 IKDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8888777542 1111100 0000000 01111 2345566677888888999988888888888
Q ss_pred CCC
Q 007808 495 PKN 497 (589)
Q Consensus 495 p~~ 497 (589)
|..
T Consensus 151 ~~~ 153 (192)
T d1hh8a_ 151 SEP 153 (192)
T ss_dssp CSG
T ss_pred CCc
Confidence 863
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.77 E-value=3.4e-08 Score=81.33 Aligned_cols=84 Identities=8% Similarity=-0.061 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCee
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVV 544 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (589)
..|..+..+|.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..++++.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al------------------- 125 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL------------------- 125 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------
Confidence 3455677888999999999999999999999999999999999999999999999999986
Q ss_pred eeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 545 MLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 545 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+++|+++.+...++.+...+++.
T Consensus 126 -----~l~P~n~~~~~~l~~~~~~~~~~ 148 (168)
T d1kt1a1 126 -----EVNPQNKAARLQIFMCQKKAKEH 148 (168)
T ss_dssp -----HSCTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HhCCCCHHHHHHHHHHHHHHHhH
Confidence 78999999999999998777654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.4e-09 Score=107.32 Aligned_cols=172 Identities=8% Similarity=-0.028 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHCCCCCCHhHHHHHHH--HHhccCcHHHHHHHHHHhHHhcCCCC-ChHHHHHHHHHHHhcCCHHHHHH
Q 007808 377 GAGALSLFHEMKNAGEMPDGITFIGILC--ACTHMGLVEEGLSYFQSMAMDYSIVP-QIEHYGCMVDLLARAGRLAEAVD 453 (589)
Q Consensus 377 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 453 (589)
+..+++.++...+....++......... .....+.++.++..+.... ++.| +...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~---~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF---NVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 4556677777665443444332222221 1223455666665554432 3434 45667778888999999999988
Q ss_pred HHhhCC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccC
Q 007808 454 FVKRMP-IEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKL 532 (589)
Q Consensus 454 ~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 532 (589)
.+++.. ..| ...+..++..+...|++++|+..|+++++++|++...|..||.++...|++.+|+..|.+..
T Consensus 142 ~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral------- 213 (497)
T d1ya0a1 142 PQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI------- 213 (497)
T ss_dssp -CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH-------
T ss_pred HHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH-------
Confidence 776652 122 34667788899999999999999999999999999999999999999999999999999986
Q ss_pred CccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCc
Q 007808 533 PGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPL 576 (589)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~ 576 (589)
..+|..+.++.+|+.++.+..+..++.
T Consensus 214 -----------------~~~~~~~~a~~nL~~~~~~~~~~~~~~ 240 (497)
T d1ya0a1 214 -----------------AVKFPFPAASTNLQKALSKALESRDEV 240 (497)
T ss_dssp -----------------SSSBCCHHHHHHHHHHHHHHTTSCCCC
T ss_pred -----------------hCCCCCHHHHHHHHHHHHHhhhhhhhh
Confidence 678899999999999998777665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.74 E-value=1.1e-08 Score=77.68 Aligned_cols=91 Identities=13% Similarity=0.024 Sum_probs=77.7
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhc
Q 007808 399 FIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRV 476 (589)
Q Consensus 399 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 476 (589)
...+...+.+.|++++|...|++++... +-++..|..++.++.+.|++++|+..++++ .+.| +...|..+..+|..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 3456677889999999999999998642 235888999999999999999999999997 4455 57888889999999
Q ss_pred CCCHHHHHHHHHHHH
Q 007808 477 YKNVELAELALERLT 491 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~ 491 (589)
.|++++|++.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=7.9e-08 Score=78.35 Aligned_cols=119 Identities=8% Similarity=-0.026 Sum_probs=97.2
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcC
Q 007808 400 IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVY 477 (589)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 477 (589)
......|.+.|++++|+..|+++++. .+.+...|..+..+|...|++++|++.|+++ ...| +...|..++.++...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence 34456778899999999999998764 2345778889999999999999999999988 4455 567888899999999
Q ss_pred CCHHHHHHHHHHHHccCCCCCcchHHHHHHHh--hcCChHHHHHH
Q 007808 478 KNVELAELALERLTELEPKNPANFVMLSNIYG--DLGRWKDVARI 520 (589)
Q Consensus 478 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 520 (589)
|++++|...+++++.++|+++.++..+..+.. ..+.+++|+..
T Consensus 92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999998888876643 44556666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=5.2e-08 Score=74.73 Aligned_cols=108 Identities=15% Similarity=-0.042 Sum_probs=84.7
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCH---HHHHHHHhhC-CCCCCH---HHHHHHHH
Q 007808 400 IGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRL---AEAVDFVKRM-PIEADA---VIWANLLG 472 (589)
Q Consensus 400 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~l~~ 472 (589)
..++..+...+++++|.+.|++.+.. -+.++.++..++.++.+.++. ++|+.+++++ ...|+. ..+..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45677788889999999999998763 244577888888888876554 5699999987 445543 36777889
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHh
Q 007808 473 SCRVYKNVELAELALERLTELEPKNPANFVMLSNIYG 509 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 509 (589)
+|.+.|++++|++.|+++++++|++..+...+..+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999998877766655543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=8.7e-08 Score=69.90 Aligned_cols=83 Identities=8% Similarity=-0.064 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC-------CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccce
Q 007808 465 VIWANLLGSCRVYKNVELAELALERLTELEPKN-------PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSS 537 (589)
Q Consensus 465 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 537 (589)
..+-.+...+.+.|++++|+..|++++++.|.+ ..++..|+.++.+.|++++|++.++++.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL------------ 73 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL------------ 73 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHH------------
Confidence 344567788999999999999999999876554 3468899999999999999999999986
Q ss_pred eeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 538 IEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 538 ~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
+++|+++.++.+++.+...+++
T Consensus 74 ------------~l~P~~~~a~~Nl~~~~~~l~k 95 (95)
T d1tjca_ 74 ------------ELDPEHQRANGNLKYFEYIMAK 95 (95)
T ss_dssp ------------HHCTTCHHHHHHHHHHHHHHHC
T ss_pred ------------HhCcCCHHHHHHHHHHHHHhCc
Confidence 8999999999999998877653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.7e-07 Score=77.06 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
.+|+.+..+|.+.|++++|+..++++ .+.| +...+..+..+|...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35777889999999999999999987 4455 778888899999999999999999999999999999999999999877
Q ss_pred cCChHHHH
Q 007808 511 LGRWKDVA 518 (589)
Q Consensus 511 ~g~~~~A~ 518 (589)
.+...+..
T Consensus 143 ~~~~~~~e 150 (170)
T d1p5qa1 143 IRRQLARE 150 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2.7e-08 Score=77.57 Aligned_cols=90 Identities=12% Similarity=0.097 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccceeeeCCeeee
Q 007808 467 WANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCSSIEVNEVVML 546 (589)
Q Consensus 467 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (589)
+..+...+...|++++|++.|+++++++|+++.++..++.+|.+.|++++|++.++++.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--------------------- 65 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI--------------------- 65 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHH---------------------
Confidence 45566778888888888888888888888888888888888888888888888888875
Q ss_pred eccccCCCchH-------HHHHHHHHHHHcccCCCCcchHh
Q 007808 547 GCLSRELDRKS-------IVRAEANMIKLLPQNNHPLTFIV 580 (589)
Q Consensus 547 ~~~~~~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~~ 580 (589)
+++|+++. ++..+|.++..+++..+|+.+..
T Consensus 66 ---~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 103 (128)
T d1elra_ 66 ---EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYN 103 (128)
T ss_dssp ---HHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44444443 55556666666666666665543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.51 E-value=2.6e-08 Score=79.45 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCC-----------hHHHHHHHHHhhhCCCccCCccceeeeCCeeee
Q 007808 478 KNVELAELALERLTELEPKNPANFVMLSNIYGDLGR-----------WKDVARIKVAMRDTGFKKLPGCSSIEVNEVVML 546 (589)
Q Consensus 478 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (589)
+.+++|+..|+++++++|+++.+|..++.+|...|+ +++|.+.|++..
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal--------------------- 113 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV--------------------- 113 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccc---------------------
Confidence 456889999999999999999999999999987764 577888887775
Q ss_pred eccccCCCchHHHHHHHHHHHHcccC
Q 007808 547 GCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 547 ~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+++|+++.++..|+......+.+
T Consensus 114 ---~l~P~~~~~~~~L~~~~ka~~~~ 136 (145)
T d1zu2a1 114 ---DEQPDNTHYLKSLEMTAKAPQLH 136 (145)
T ss_dssp ---HHCTTCHHHHHHHHHHHTHHHHH
T ss_pred ---ccCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887665544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=1.3e-05 Score=71.23 Aligned_cols=227 Identities=13% Similarity=-0.010 Sum_probs=134.5
Q ss_pred chhHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhHHH
Q 007808 259 VFSWNGLIGGYANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACAR----LGALDFSKWVHVYAEYNGYQGNVCVGN 334 (589)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 334 (589)
+..+..|...+.+.+++++|++.|++..+.| +...+..+...|.. ..+...+...+....+.+. .....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~ 74 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCH 74 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhh
Confidence 4455666667777777888888777777765 33334444444443 3355555555555554431 11122
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHH----hccC
Q 007808 335 ALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCAC----THMG 410 (589)
Q Consensus 335 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~g 410 (589)
.+...+... .....+.+.|...++...+.|..+ . ...+...+ ....
T Consensus 75 ~l~~~~~~~---------------------------~~~~~~~~~a~~~~~~a~~~g~~~-a--~~~l~~~~~~~~~~~~ 124 (265)
T d1ouva_ 75 LLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLKYAE-G--CASLGGIYHDGKVVTR 124 (265)
T ss_dssp HHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTTCHH-H--HHHHHHHHHHCSSSCC
T ss_pred ccccccccc---------------------------cccchhhHHHHHHHhhhhhhhhhh-H--HHhhcccccCCCcccc
Confidence 222221110 011345666777777776654221 1 11222222 2334
Q ss_pred cHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhc----CCCHHH
Q 007808 411 LVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEAVDFVKRMPIEADAVIWANLLGSCRV----YKNVEL 482 (589)
Q Consensus 411 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 482 (589)
....+...+..... ..+...+..|...|.. ..+...+...++......+......+...+.. ..++++
T Consensus 125 ~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 125 DFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred hhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhh
Confidence 56666666666543 2455666667777764 44566777777766333456666566655544 568999
Q ss_pred HHHHHHHHHccCCCCCcchHHHHHHHhh----cCChHHHHHHHHHhhhCC
Q 007808 483 AELALERLTELEPKNPANFVMLSNIYGD----LGRWKDVARIKVAMRDTG 528 (589)
Q Consensus 483 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 528 (589)
|+..|+++.+.+ ++.++..|+.+|.+ ..++++|.+++++..+.|
T Consensus 201 A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 201 ALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 999999998875 46788999999986 448999999999987555
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=4.5e-07 Score=70.40 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=76.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchH-------HHH
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFV-------MLS 505 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-------~l~ 505 (589)
+..++..|.+.|++++|+..|++. ...| +...+..+..+|.+.|++++|++.++++++++|+++..+. .++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 456788899999999999999887 3444 6788888999999999999999999999999998876554 556
Q ss_pred HHHhhcCChHHHHHHHHHhh
Q 007808 506 NIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 506 ~~~~~~g~~~~A~~~~~~~~ 525 (589)
.++...+++++|++.+++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 66777889999999998875
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.43 E-value=1.9e-06 Score=70.51 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhC-CCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 433 EHYGCMVDLLARAGRLAEAVDFVKRM-PIE-ADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 433 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
.+|..+..+|.+.|++++|+..++++ ... .+...|..+..++...|++++|+..|+++++++|+++.+...+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677888999999999999999987 334 4678888899999999999999999999999999999999999999887
Q ss_pred cCChHH-HHHHHHHh
Q 007808 511 LGRWKD-VARIKVAM 524 (589)
Q Consensus 511 ~g~~~~-A~~~~~~~ 524 (589)
.+...+ ..+.+.+|
T Consensus 145 ~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 145 AKEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 776544 44555555
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.38 E-value=7.2e-07 Score=73.26 Aligned_cols=132 Identities=12% Similarity=0.052 Sum_probs=94.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCC-CChHHHHHHHHHH
Q 007808 364 WNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIV-PQIEHYGCMVDLL 442 (589)
Q Consensus 364 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~ 442 (589)
+......+...|++++|++.|+++++. .+ ........... . .+. .....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~----------~~~~~~~~~~~------~----~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY--VE----------GSRAAAEDADG------A----KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--HH----------HHHHHSCHHHH------G----GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--hh----------hhhhhhhhHHH------H----HhChhhHHHHHHHHHHH
Confidence 444566677778888888887776541 00 00000000000 0 111 2355677889999
Q ss_pred HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHH
Q 007808 443 ARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDV 517 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 517 (589)
.+.|++++|+..++++ .+.| +...|..+..++...|++++|++.|+++++++|+++.++..+..+..+.....++
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 5556 6778888999999999999999999999999999999998888887665555444
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.31 E-value=0.00026 Score=62.27 Aligned_cols=229 Identities=10% Similarity=-0.052 Sum_probs=130.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhhCCC-CCchhHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 007808 227 DVISWNTMLSGYANNGDVEECKRLFEEMPE-RNVFSWNGLIGGYAN----NGLFFEVLDAFKRMLTEGRVFPNDATIVTV 301 (589)
Q Consensus 227 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l 301 (589)
|+..+..|...+.+.+++++|++.|++..+ .+..++..|...|.. ..+...|...+......+ .| .....+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~--~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS--NGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH--HHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--cc--chhhcc
Confidence 456677788888899999999999999875 466777777777776 668899999999988876 22 223333
Q ss_pred HHHHH----hcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCcchHHHHHHHHHhCCCh
Q 007808 302 LSACA----RLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIENAVDVFNSMDTKDLITWNTIISGLAMHGRG 377 (589)
Q Consensus 302 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 377 (589)
...+. ...+.+.+...++...+.|.. .....+...+.... ......
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~---------------------------~~~~~~ 126 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK---------------------------VVTRDF 126 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS---------------------------SSCCCH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC---------------------------cccchh
Confidence 33333 245667788888777776532 12222222222100 011223
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHhc----cCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHH
Q 007808 378 AGALSLFHEMKNAGEMPDGITFIGILCACTH----MGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLA 449 (589)
Q Consensus 378 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 449 (589)
..+...+...... .+...+..+...+.. ..+...+..+++...+. .+......+...|.. ..+++
T Consensus 127 ~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 127 KKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchh
Confidence 3344444444332 233333344444332 34455555555555331 234444445544443 45677
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCCC
Q 007808 450 EAVDFVKRMPIEADAVIWANLLGSCRV----YKNVELAELALERLTELEPK 496 (589)
Q Consensus 450 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 496 (589)
+|+..|++....-++..+..|...|.. ..+.++|.+.|+++.+.++.
T Consensus 200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 777777766322344555555555543 33677777777777776643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.31 E-value=1.7e-06 Score=69.41 Aligned_cols=127 Identities=11% Similarity=0.002 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHH
Q 007808 363 TWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLL 442 (589)
Q Consensus 363 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 442 (589)
.+...+..+.+.|++.+|+..|++.... .|..... ........... ....+|+.++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------hhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 4555666777888888888888877762 1111000 00000000000 1234677889999
Q ss_pred HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh
Q 007808 443 ARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGD 510 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 510 (589)
.+.|++++|++.++++ .+.| +...|..+..++...|++++|+..|+++++++|+|+.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999987 4455 778999999999999999999999999999999999888777766544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.18 E-value=3.5e-07 Score=72.70 Aligned_cols=75 Identities=9% Similarity=-0.024 Sum_probs=65.0
Q ss_pred HhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcC----------ChHHHHHHHHHhhhCCCccCCccceeeeCCe
Q 007808 474 CRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLG----------RWKDVARIKVAMRDTGFKKLPGCSSIEVNEV 543 (589)
Q Consensus 474 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (589)
|.+.+.+++|++.|+++++++|+++.++..++.+|...+ .+++|++.++++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl------------------ 68 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL------------------ 68 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH------------------
Confidence 445677999999999999999999999999999998654 4567788777775
Q ss_pred eeeeccccCCCchHHHHHHHHHHHHcccC
Q 007808 544 VMLGCLSRELDRKSIVRAEANMIKLLPQN 572 (589)
Q Consensus 544 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 572 (589)
+++|+++.++..+|.+|..+|+.
T Consensus 69 ------~l~P~~~~a~~~lG~~y~~~g~~ 91 (145)
T d1zu2a1 69 ------LIDPKKDEAVWCIGNAYTSFAFL 91 (145)
T ss_dssp ------HHCTTCHHHHHHHHHHHHHHHHH
T ss_pred ------HhcchhhHHHhhHHHHHHHcccc
Confidence 89999999999999999998864
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.16 E-value=0.00054 Score=61.63 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=73.7
Q ss_pred CCccchHHHHHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHh
Q 007808 32 KSDYITPRIITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCV 111 (589)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 111 (589)
|+..--..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+... .+..+|..+...|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 4444445666777777888888888876544 777777778888888877776543 24557777777776
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCC
Q 007808 112 KINALREGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCG 180 (589)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g 180 (589)
.......+ ++...+...++.....++..|-..|.+++...+++.... .+...++.++..|++.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 65554332 122222333445555677777777777777777775432 34445666666666653
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=0.0016 Score=58.45 Aligned_cols=132 Identities=11% Similarity=0.066 Sum_probs=54.9
Q ss_pred CCcccHHHHHHHHHcCCChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHH
Q 007808 63 QNVVSWNAMFNGYAQNEFHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALI 142 (589)
Q Consensus 63 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 142 (589)
+|..--..+..-|.+.|.++.|..+|..+.. |..++..+.+.++++.|.++.... -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 4433334455555566666666666655431 455556666666666655554332 1344555555
Q ss_pred HHHHcCCChHHHHHHHccCCCCCeehHHHHHHHHHhCCCHHHHHHHHHhCCC---CChhHHHHHHHHHhcC
Q 007808 143 ELYSTGKAIEAAYKVFGEMDERNVVVWTSMINGYISCGDIVSARCLFELAPE---RDVILWNTIVSGYIDV 210 (589)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 210 (589)
..+.+.....-+.-+ ......+......++..|-..|.+++...+++.... .+...++.++..|++.
T Consensus 77 ~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 77 FACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 555555444333211 111112223334455555555555555555554321 2333444455544443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.05 E-value=9.7e-06 Score=66.51 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=78.4
Q ss_pred HHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHH-HHHHHHhhCCCCCCHHHHHHHHHHHhcCCC
Q 007808 401 GILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLA-EAVDFVKRMPIEADAVIWANLLGSCRVYKN 479 (589)
Q Consensus 401 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 479 (589)
.........|++++|.+.|.+.+.-+ ++...- + + ..+.+- ....-++. -....+..+...+...|+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l~----~-~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW---RGPVLD----D-L-RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---CSSTTG----G-G-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC---cccccc----c-C-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence 34456677888888888888886422 221100 0 0 001110 00001110 113456777888999999
Q ss_pred HHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 480 VELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 480 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
+++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.
T Consensus 83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999984
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=4.2e-07 Score=89.10 Aligned_cols=113 Identities=8% Similarity=-0.090 Sum_probs=72.5
Q ss_pred HHHhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHH
Q 007808 441 LLARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVA 518 (589)
Q Consensus 441 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 518 (589)
.+...+.++.|+..+++. ...| +...+..+...+.+.|+.++|...+++++..+|. .++..+|.++...|++++|+
T Consensus 95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~ 172 (497)
T d1ya0a1 95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAE 172 (497)
T ss_dssp HHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHH
Confidence 344567788888877766 4444 4566777788889999999999999999887774 58899999999999999999
Q ss_pred HHHHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchH
Q 007808 519 RIKVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFI 579 (589)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 579 (589)
..|++.. +++|+++.++..||.+|...|+..+|+.+.
T Consensus 173 ~~y~~A~------------------------~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y 209 (497)
T d1ya0a1 173 SYYRHAA------------------------QLVPSNGQPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HHHHHHH------------------------HHCTTBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHH------------------------HHCCCchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999986 899999999999999999999998887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.98 E-value=1.3e-05 Score=64.44 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=63.9
Q ss_pred HHHHHhcCCHHHHHHHHhhC----CCCCC----------HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCC-------
Q 007808 439 VDLLARAGRLAEAVDFVKRM----PIEAD----------AVIWANLLGSCRVYKNVELAELALERLTELEPKN------- 497 (589)
Q Consensus 439 ~~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------- 497 (589)
+..+.+.|++++|++.|++. +..|+ ...|+.+..+|.+.|++++|.+.+++++++.|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455566666666666654 11121 3567778888999999999999999998754421
Q ss_pred ----CcchHHHHHHHhhcCChHHHHHHHHHhh
Q 007808 498 ----PANFVMLSNIYGDLGRWKDVARIKVAMR 525 (589)
Q Consensus 498 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 525 (589)
..++..++.+|...|++++|++.|++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2257889999999999999999999985
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=1.7e-05 Score=57.21 Aligned_cols=74 Identities=12% Similarity=0.031 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhC----C----CCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHH
Q 007808 435 YGCMVDLLARAGRLAEAVDFVKRM----P----IEAD-AVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLS 505 (589)
Q Consensus 435 ~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 505 (589)
+-.++..+.+.|++++|+..|+++ + ..++ ..++..+..++.+.|++++|+..++++++++|+++.++.++.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~ 87 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 335667777777777777777665 1 1222 467888999999999999999999999999999998888876
Q ss_pred HHH
Q 007808 506 NIY 508 (589)
Q Consensus 506 ~~~ 508 (589)
...
T Consensus 88 ~~~ 90 (95)
T d1tjca_ 88 YFE 90 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.72 E-value=0.00014 Score=57.98 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=62.3
Q ss_pred HHhccCcHHHHHHHHHHhHHhcCCCCC----------hHHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCCC---
Q 007808 405 ACTHMGLVEEGLSYFQSMAMDYSIVPQ----------IEHYGCMVDLLARAGRLAEAVDFVKRM--------PIEAD--- 463 (589)
Q Consensus 405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~--- 463 (589)
.+...|++++|++.|++.+.-..-.|+ ...|+.+..+|.+.|++++|++.+++. ...++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 444556666666666666543222222 245667777778888887777766654 12222
Q ss_pred --HHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCc
Q 007808 464 --AVIWANLLGSCRVYKNVELAELALERLTELEPKNPA 499 (589)
Q Consensus 464 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 499 (589)
...+..+..+|...|++++|++.|++++++.|....
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 224566778899999999999999999998765443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.72 E-value=3.8e-05 Score=67.25 Aligned_cols=129 Identities=13% Similarity=-0.033 Sum_probs=93.1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCC-hHHHHHHHHHHHhcCCHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQ-IEHYGCMVDLLARAGRLA 449 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 449 (589)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 456799999999999999852 346788999999999999999999999998753 455 445555666665555555
Q ss_pred HHHHHHhhC--CCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHH
Q 007808 450 EAVDFVKRM--PIEADA-VIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVM 503 (589)
Q Consensus 450 ~A~~~~~~~--~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 503 (589)
++..-.... ...|+. ..+......+...|+.++|.+.++++.+..|..+..+..
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence 544433322 123332 333334466788999999999999999999987776554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.68 E-value=2.6e-05 Score=68.26 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=68.4
Q ss_pred HhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHH
Q 007808 443 ARAGRLAEAVDFVKRM-PIEA-DAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARI 520 (589)
Q Consensus 443 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 520 (589)
.+.|++++|+..+++. ...| +...+..+...++..|++++|...++++.+++|++...+..++.++...+..+++...
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence 3456666666666655 2333 4455555556666666666666666666666666555555555555433333222111
Q ss_pred HHHhhhCCCccCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 521 KVAMRDTGFKKLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
.....+..+|+....+...+.++...|+.++|++....+
T Consensus 87 -----------------------~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a 125 (264)
T d1zbpa1 87 -----------------------AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125 (264)
T ss_dssp -----------------------CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----------------------hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 001123456777788888888898999988888776544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.64 E-value=5.5e-05 Score=61.84 Aligned_cols=86 Identities=12% Similarity=-0.074 Sum_probs=67.8
Q ss_pred HHhcCCCHHHHHHHHHHHHccCCCC----------------------CcchHHHHHHHhhcCChHHHHHHHHHhhhCCCc
Q 007808 473 SCRVYKNVELAELALERLTELEPKN----------------------PANFVMLSNIYGDLGRWKDVARIKVAMRDTGFK 530 (589)
Q Consensus 473 ~~~~~g~~~~A~~~~~~~~~~~p~~----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 530 (589)
.....|++++|.+.|.+++++.|.+ ..++..++.++.+.|++++|+..++++.
T Consensus 20 ~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al----- 94 (179)
T d2ff4a2 20 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT----- 94 (179)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH-----
Confidence 3455556666666666655554332 2467889999999999999999999996
Q ss_pred cCCccceeeeCCeeeeeccccCCCchHHHHHHHHHHHHcccCCCCcchHhhh
Q 007808 531 KLPGCSSIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQNNHPLTFIVVI 582 (589)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 582 (589)
+.+|.+..++..|+.++..+|+.++|++...-.
T Consensus 95 -------------------~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 95 -------------------FEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp -------------------HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -------------------HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 899999999999999999999999998765543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.49 E-value=0.00019 Score=53.04 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHccCCCCC-cchHHHHHHHhhcCChHHHHHHHHHhhhCCCccCCccc
Q 007808 461 EADAVIWANLLGSCRVYK---NVELAELALERLTELEPKNP-ANFVMLSNIYGDLGRWKDVARIKVAMRDTGFKKLPGCS 536 (589)
Q Consensus 461 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 536 (589)
.|...+--.+.+++.++. +.++|+.+++.+++.+|.+. .++..|+.+|.+.|++++|.++++++.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L----------- 100 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF----------- 100 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------
Confidence 345555555666666554 45789999999998888654 688999999999999999999999886
Q ss_pred eeeeCCeeeeeccccCCCchHHHHHHHHHHHHccc
Q 007808 537 SIEVNEVVMLGCLSRELDRKSIVRAEANMIKLLPQ 571 (589)
Q Consensus 537 ~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 571 (589)
+.+|+|..+..+..-|..++.+
T Consensus 101 -------------~ieP~n~qA~~L~~~Ie~~~~k 122 (124)
T d2pqrb1 101 -------------EHERNNKQVGALKSMVEDKIQK 122 (124)
T ss_dssp -------------HHCTTCHHHHHHHHHHHHHHHH
T ss_pred -------------ccCCCcHHHHHHHHHHHHHHhc
Confidence 8899999999988888877654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.056 Score=50.88 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=28.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 007808 235 LSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYANNGLFFEVLDAFKRMLTEG 289 (589)
Q Consensus 235 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 289 (589)
+..+.+.+++......+..-+ .+...-.....+....|+..+|...+..+-..|
T Consensus 79 l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 79 VNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 445555666655554443211 133333345555666666666666666655555
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.71 E-value=0.021 Score=41.21 Aligned_cols=141 Identities=9% Similarity=0.066 Sum_probs=98.4
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHhcCCHHH
Q 007808 371 LAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLARAGRLAE 450 (589)
Q Consensus 371 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 450 (589)
+.-.|..++..+++.+... ..+..-|+.++--....-+-+...+.++.+-+-+.+ ..+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHH
Confidence 4456777888888877776 234555666666555566666666666666332222 23444444
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhhcCChHHHHHHHHHhhhCCCc
Q 007808 451 AVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLTELEPKNPANFVMLSNIYGDLGRWKDVARIKVAMRDTGFK 530 (589)
Q Consensus 451 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 530 (589)
....+-.+. .+...+...+..+.++|+-++-.++++.+++.+..+|+.+..++.+|.+.|...++-+++.++-+.|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444444443 344556666788889999999999999988766556899999999999999999999999999888875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.11 E-value=0.022 Score=43.13 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHccCCCCCcchHHHHHHHhh----cCChHHHHHHHHHhhhCCC
Q 007808 477 YKNVELAELALERLTELEPKNPANFVMLSNIYGD----LGRWKDVARIKVAMRDTGF 529 (589)
Q Consensus 477 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 529 (589)
..+.++|.+.|+++.+.. ++.+...|+.+|.. ..+.++|.+++++..+.|.
T Consensus 72 ~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 72 KKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred chhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 346677777777776654 35566777777766 3467777777777765553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.52 E-value=0.1 Score=39.24 Aligned_cols=111 Identities=12% Similarity=0.002 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHHHHHh----cCCHHHH
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVDLLAR----AGRLAEA 451 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 451 (589)
++++|+.+|++..+.|. | .....|. .....+.++|.+++++..+. -++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~----g~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhcc----cchhhhhhHHHhhhhccccchhhHHH
Confidence 67788888888888762 2 2222332 23456788888888887543 345555566666654 4568889
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHccCC
Q 007808 452 VDFVKRMPIEADAVIWANLLGSCRV----YKNVELAELALERLTELEP 495 (589)
Q Consensus 452 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 495 (589)
.++|++.-..-++.....|...|.. ..+.++|.+.|+++.+...
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999887323345555556555544 4689999999999887654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.13 E-value=0.36 Score=34.75 Aligned_cols=138 Identities=10% Similarity=0.027 Sum_probs=81.5
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007808 269 YANNGLFFEVLDAFKRMLTEGRVFPNDATIVTVLSACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIEN 348 (589)
Q Consensus 269 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (589)
+.-.|..++..+++.+..... +..-|+.++--....-+-+...+.++.+-+. .|. ..++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~ss----~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcccC----CccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHH
Confidence 445677777777777776643 3444555554444444444444444433221 111 12233333
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 349 AVDVFNSMDTKDLITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 349 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
....+-.+.. +....+..++.+.++|+-+.-.++++.+.+.+ +|++.....+..+|.+.|...++.+++.++.++
T Consensus 75 vv~C~~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 75 VVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3333332222 23344556677788888888888888877754 777788888888888889888888888887654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=0.082 Score=38.57 Aligned_cols=71 Identities=14% Similarity=0.023 Sum_probs=49.6
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHhhC-CCCC-CH-HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCCCCcc
Q 007808 430 PQIEHYGCMVDLLARAGR---LAEAVDFVKRM-PIEA-DA-VIWANLLGSCRVYKNVELAELALERLTELEPKNPAN 500 (589)
Q Consensus 430 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 500 (589)
|.+.+.-.+..++++... .++++.++++. ...| +. ..+..+.-+|.+.|++++|.++++++++++|+|..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 444555555666665544 45677777776 2234 33 456667788889999999999999999999987644
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.03 E-value=4.5 Score=37.13 Aligned_cols=407 Identities=11% Similarity=-0.064 Sum_probs=214.4
Q ss_pred HHHHHccCChhHHHHHhhcCCCCCcccHHHHHHHHH--cCCChhHHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCChH
Q 007808 41 ITACAQLKQMTYARKMFDKITDQNVVSWNAMFNGYA--QNEFHRTVVVLFTQMKKLDAMPNC-FTFPIVLKSCVKINALR 117 (589)
Q Consensus 41 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~ 117 (589)
+.-..+.|+...+..+...+..-....|-..-..-. ......+...++++-. -.|-. ..-..-+..+.+.++++
T Consensus 13 a~~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p---~~P~~~~lr~~~l~~L~~~~~w~ 89 (450)
T d1qsaa1 13 IKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANP---TLPPARTLQSRFVNELARREDWR 89 (450)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHHHHHHCC---CChhHHHHHHHHHHHHHhccCHH
Confidence 344556778888888888875411333432222222 2233444433333321 11111 11122345556666665
Q ss_pred HHHHHHHHHHHhCCCCchHHHhHHHHHHHcCCChHHHHHHHccCCC---CCeehHHHHHHHHHhCCCHHHHHHHHHhCCC
Q 007808 118 EGEELHCLVLKNGFRANIFVGTALIELYSTGKAIEAAYKVFGEMDE---RNVVVWTSMINGYISCGDIVSARCLFELAPE 194 (589)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 194 (589)
.....+. ..+.+...-.....+....|+.++|...+..+=. .....+..+...+...|.+
T Consensus 90 ~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~l------------ 152 (450)
T d1qsaa1 90 GLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQ------------ 152 (450)
T ss_dssp HHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCS------------
T ss_pred HHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCC------------
Confidence 5433221 1234455555666777778887777766553311 2233344444444444332
Q ss_pred CChhHHHHHHHHHhcCCChHHHHHHhcccCCCChhhHHHHHHHHHhcCCHHHHHHHHhhCCCCCchhHHHHHHHHHh--C
Q 007808 195 RDVILWNTIVSGYIDVRNMIEARKLFDQMPKKDVISWNTMLSGYANNGDVEECKRLFEEMPERNVFSWNGLIGGYAN--N 272 (589)
Q Consensus 195 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~ 272 (589)
+...+-.-+......|+...|..+...+...........+..... ...+......... +......+..++.+ .
T Consensus 153 -t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~~~~-~~~~~~~~~~~l~rla~ 227 (450)
T d1qsaa1 153 -DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTGA-TDFTRQMAAVAFASVAR 227 (450)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSCC-CHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhcCCC-ChhhhHHHHHHHHHHhc
Confidence 333333444555667788888887776654444444444444432 2233333332222 22222222222222 3
Q ss_pred CChHHHHHHHHHHHHcCCCCCcHHHHHHHH----HHHHhcCChhHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 007808 273 GLFFEVLDAFKRMLTEGRVFPNDATIVTVL----SACARLGALDFSKWVHVYAEYNGYQGNVCVGNALIDMYAKCGIIEN 348 (589)
Q Consensus 273 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (589)
.+.+.|..++..........++ ....+- ......+..+.+..........+ .+.......+......+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNED--QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhcccccHH--HHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHH
Confidence 5778888888887665422222 222222 22234456667777766665543 344445556666677889999
Q ss_pred HHHHHhhCCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHh
Q 007808 349 AVDVFNSMDTKD---LITWNTIISGLAMHGRGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMD 425 (589)
Q Consensus 349 A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 425 (589)
+...+..+.... .....=+..++...|+.++|...|..... .++ -|..|...- .|..- .+ ..
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~~--Lg~~~-------~~-~~ 368 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQR--IGEEY-------EL-KI 368 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHHH--TTCCC-------CC-CC
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHHH--cCCCC-------CC-Cc
Confidence 999999887431 22334466788889999999999998864 233 233333221 12100 00 00
Q ss_pred cCC--CCChH----HHHHHHHHHHhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 007808 426 YSI--VPQIE----HYGCMVDLLARAGRLAEAVDFVKRMPIEADAVIWANLLGSCRVYKNVELAELALERLT 491 (589)
Q Consensus 426 ~~~--~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 491 (589)
... .+... .-..-+..+...|+..+|...+..+....+......+.....+.|.++.|+....++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 000 01100 0112356677889999998888766323456666677777889999999998877764
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.69 E-value=1.4 Score=29.87 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhHHHHHHHHHhccCcHHHHHHHHHHhHHhcCCCCChHHHHHHHH
Q 007808 376 RGAGALSLFHEMKNAGEMPDGITFIGILCACTHMGLVEEGLSYFQSMAMDYSIVPQIEHYGCMVD 440 (589)
Q Consensus 376 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 440 (589)
+.-++..-+..+....+.|++....+.+.+|.+.+++..|.++++.+..+.+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4446677777777888899999999999999999999999999998866544 34556766554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.40 E-value=1.5 Score=29.82 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHhhhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 007808 80 FHRTVVVLFTQMKKLDAMPNCFTFPIVLKSCVKINALREGEELHCLVLKNGFRANIFVGTALIE 143 (589)
Q Consensus 80 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 143 (589)
+.-++.+-++.+...+..|++....+.+++|.|.+++..|.++++-..... .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 445667777788888888999999999999999999999999998877553 334556665543
|