Citrus Sinensis ID: 007847

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------
MYSNLTSSQALSLATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRSLGFSKSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGFSSLSSVRVDERSPVLRAGRPLASLKSNKVKEAKRLGKVISAEASRSSWEASAERLEDVSSSHSSWEESAKRLEKVTTTNIGRSLEESTKTFSRTEEHRERVVDMSTGHRNVYAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIEDSSTATVD
ccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHcccccccEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEccHHHHHHHHccccccEEEEEEccccccccccHHHHHHccccccEEEEEccccccccHHHHHHHHHHccccEEEEcccccccccHHHHHHHccccccccEEEEEcHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEEccccccccHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccc
ccccHHHHcccHHHHEEccccccccccEEcccccccccccccccccccEEEEccccHHccccccccccEEEEccccccccHHccccccHHHHHHHHHHHHHHHHHHHcccccccccEccccccEEEcccccccccccccHEcccccEEEEcccccccccccHHHHHHHccccccHHHHHHHHHHcccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHcccccEEEEEEEcccccccccccccccccHHHHHHHHHHcccEEEEEcHHHHHHHHccccccEEEEEEcccHHccHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHcHHHEccEEEHHHHHHHHHHHHHcccEEEEEccccccccEEEEcccccEEEEEcccccccHHHHHHcccEEEEEccccccccEEcccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
MYSNLTSSQALSLATRISSEPTRFFKYIYTksqslpmgsvskrplnpsfisfsrnghirslgfskstnFSLVFCNksmqmgvlekprrvssvmRVKCAVQCCdlirgrgfsslssvrvderspvlragrplaslksnKVKEAKRLGKVISAEASRSSWEASAERLEDVSSSHSSWEESAKRLEKVTTTNIGRSLEESTKTFSRTEEHRERVVDmstghrnvyaknqgtaeeegeemeaVSDSKWNKRRNSFrrdvkartekpeyqrwnrqensgrttwkeaapstvpkmvgeglyGVGPVLAALSAKTREFYALYVQEGlslssnnrkkkdKKGYEKVLKMAENMGISIketskhdlnmvvgnrphqglvldasplemvkikeldpisadedQASLWVALdevtdpqnlgaIIRSAYFFGASGVVLCaknsaplsgvvskassgsleLMELRYCNNMMQFLVSSAENgwrvlggsvsskavplneippgqptilvlgsegtglrplverscthlvripgnipvdvtageiddvdadgnhgsaeqFQSFMAVESLNVSVAAGVLLHHLVghqvsnnshiedsstatvd
mysnltssqalslatrisseptrFFKYIYTksqslpmgsvsKRPLNPSFISFSRNGHIRSLGFSKSTNFSLVFCNKSMQMGVLekprrvssvMRVKCAVQCCDlirgrgfsslssvrvderspvlragrplaslksnkvkeakrlgkvisaeasrssweaSAERledvssshssweesakrlekvtttnigrsleestktfsrteehrervvdmstghrnvyaknqgtaeeegeemeavsdskwnkrrnsfrrdvkartekpeyqrwnrqensgrttwkeaapstvpKMVGEGLYGVGPVLAALSAKTREFYALYVqeglslssnnrkkkdkkGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHlvripgnipvdvTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVghqvsnnshiedsstatvd
MYSNLTSSQALSLATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRSLGFSKSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGFSSLSSVRVDERSPVLRAGRPLASLKSNKVKEAKRLGKVIsaeasrssweasaerleDVssshssweesAKRLEKVTTTNIGRSLEESTKTFSRTEEHRERVVDMSTGHRNVYAKNQGTAeeegeemeAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIEDSSTATVD
*********************TRFFKYIYTK*****************FISFSRNGHIRSLGFSKSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGFSS*******************************************************************************************************************************************************************************KMVGEGLYGVGPVLAALSAKTREFYALYVQEGL************************************LNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD******EQFQSFMAVESLNVSVAAGVLLHHLVGHQ****************
*********ALSLATRISSEPTRFFKYIYTKSQSL******************************************************************************************************************************************************************************************************************************************************************LYGVGPVLAALSAKTREFYALYVQEGLSLS*********KGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL********************
************LATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRSLGFSKSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGFSSLSSVRVDERSPVLRAGRPLASLKSNKVKEAKRLGKVI************************************TTTNIGRSLEESTKTFSRTEEHRERVVDMSTGHRNVYAKN******************WNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNS***********
*YSNLTSSQALSLATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRSLGFSKSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRG**************V*R*GRPLASLKSNKVKEAKRLGKVISA*****************************************************************************************************************************************MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAG**********************VESLNVSVAAGVLLHHLVGHQVSNN************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
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MYSNLTSSQALSLATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRSLGFSKSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGFSSLSSVRVDERSPVLRAGRPLASLKSNKVKEAKRLGKVISAEASRSSWEASAERLEDVSSSHSSWEESAKRLEKVTTTNIGRSLEESTKTFSRTEEHRERVVDMSTGHRNVYAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIEDSSTATVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query587 2.2.26 [Sep-21-2011]
Q76NT0531 Mitochondrial rRNA methyl yes no 0.362 0.401 0.332 3e-35
Q6IN84353 rRNA methyltransferase 1, yes no 0.427 0.711 0.337 6e-34
O94631301 rRNA methyltransferase, m yes no 0.400 0.780 0.347 2e-33
Q99J25320 rRNA methyltransferase 1, yes no 0.357 0.656 0.357 2e-29
A4T5L0314 Uncharacterized tRNA/rRNA yes no 0.398 0.745 0.336 3e-26
Q6FF50248 23S rRNA (guanosine-2'-O- yes no 0.393 0.931 0.309 4e-25
A0QAB6309 Uncharacterized tRNA/rRNA yes no 0.402 0.763 0.333 6e-25
P74328384 Uncharacterized tRNA/rRNA N/A no 0.422 0.645 0.293 8e-25
Q743W2309 Uncharacterized tRNA/rRNA N/A no 0.402 0.763 0.333 1e-24
A0PV26310 Uncharacterized tRNA/rRNA yes no 0.402 0.761 0.315 1e-24
>sp|Q76NT0|MRM1_DICDI Mitochondrial rRNA methyltransferase OS=Dictyostelium discoideum GN=mrm1 PE=3 SV=1 Back     alignment and function desciption
 Score =  150 bits (378), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/268 (33%), Positives = 139/268 (51%), Gaps = 55/268 (20%)

Query: 329 KKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPIS 388
           +K+    ++++K +  + I ++  +K  L+     RPHQG++LDASPL ++ I  L+   
Sbjct: 284 RKNLVALKEIVKNSFKLKIPVRSVNKGTLDSFSKGRPHQGIILDASPLTLLNIDFLEKFD 343

Query: 389 ADE-----------------------DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
            +E                       D+  LW+ LDE+ DPQN+GAIIR+  FF   GVV
Sbjct: 344 INERVNKRMNGGGGGGGGGGGNKINNDKYPLWLVLDELWDPQNVGAIIRNCSFFNIDGVV 403

Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSV-----SSKA 480
           +  KNS+P++   SK+SSG+ E   +    ++  FL SS  NGW V+G S+     +   
Sbjct: 404 ISNKNSSPITPAASKSSSGACESFVINRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPC 463

Query: 481 VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHG 540
           + +N+I   QPTIL+LG+EG GL+P V   C   ++I G                 GN+ 
Sbjct: 464 LDINQIKLDQPTILILGNEGFGLKPSVLEICNKTIKIVG-----------------GNY- 505

Query: 541 SAEQFQSFMAVESLNVSVAAGVLLHHLV 568
                     ++SLNVSV +G+L+H L+
Sbjct: 506 ---------KIDSLNVSVTSGILIHTLL 524
Probably methylates the ribose of a guanosine in the peptidyl transferase center of the mitochondrial large ribosomal RNA (21S).
Dictyostelium discoideum (taxid: 44689)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q6IN84|MRM1_HUMAN rRNA methyltransferase 1, mitochondrial OS=Homo sapiens GN=MRM1 PE=1 SV=1 Back     alignment and function description
>sp|O94631|MRM1_SCHPO rRNA methyltransferase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrm1 PE=3 SV=1 Back     alignment and function description
>sp|Q99J25|MRM1_MOUSE rRNA methyltransferase 1, mitochondrial OS=Mus musculus GN=Mrm1 PE=2 SV=2 Back     alignment and function description
>sp|A4T5L0|Y1447_MYCGI Uncharacterized tRNA/rRNA methyltransferase Mflv_1447 OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_1447 PE=3 SV=1 Back     alignment and function description
>sp|Q6FF50|RLMB_ACIAD 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Acinetobacter sp. (strain ADP1) GN=rlmB PE=3 SV=1 Back     alignment and function description
>sp|A0QAB6|Y574_MYCA1 Uncharacterized tRNA/rRNA methyltransferase MAV_0574 OS=Mycobacterium avium (strain 104) GN=MAV_0574 PE=3 SV=1 Back     alignment and function description
>sp|P74328|Y955_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr0955 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0955 PE=3 SV=1 Back     alignment and function description
>sp|Q743W2|Y479_MYCPA Uncharacterized tRNA/rRNA methyltransferase MAP_0479 OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=MAP_0479 PE=3 SV=1 Back     alignment and function description
>sp|A0PV26|Y4155_MYCUA Uncharacterized tRNA/rRNA methyltransferase MUL_4155 OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_4155 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query587
225445088595 PREDICTED: uncharacterized protein LOC10 0.971 0.957 0.593 0.0
297738755569 unnamed protein product [Vitis vinifera] 0.930 0.959 0.575 1e-174
224143649571 predicted protein [Populus trichocarpa] 0.938 0.964 0.576 1e-172
255546313517 rRNA methylase, putative [Ricinus commun 0.841 0.955 0.620 1e-151
356527755557 PREDICTED: uncharacterized tRNA/rRNA met 0.892 0.940 0.528 1e-149
449435780529 PREDICTED: uncharacterized tRNA/rRNA met 0.701 0.778 0.624 1e-144
449485822529 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.701 0.778 0.622 1e-144
357520841572 tRNA/rRNA methyltransferase, putative [M 0.884 0.907 0.509 1e-143
3687231577 hypothetical protein [Arabidopsis thalia 0.575 0.585 0.690 1e-137
30680811589 tRNA/rRNA methyltransferase (SpoU)-like 0.575 0.573 0.690 1e-136
>gi|225445088|ref|XP_002280407.1| PREDICTED: uncharacterized protein LOC100242436 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/598 (59%), Positives = 422/598 (70%), Gaps = 28/598 (4%)

Query: 1   MYSNLTSSQALSLATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRS 60
           MY N T  QA  LA R+SS+P  F K+   K+Q LP+G   K   NP  +  +      S
Sbjct: 1   MYCNFTKCQAFPLAIRVSSQPICFRKFHTLKTQFLPIGFHPKPSQNPILVKCA----TLS 56

Query: 61  LGFS----------KSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGF 110
            GF           KST   +   +K+++ G   +PR VS   R+K  VQ  + +RGR F
Sbjct: 57  CGFGCKPHENSHSLKSTGILIELHHKALEKGTTRRPRSVSCGFRLKNVVQSYNFLRGRSF 116

Query: 111 SSLSSVRVDERSPVLRAGRPLASLKSNKVKEAKRLGKVISAEASRSSWEASAERLEDVSS 170
           SS  SVRV   S  +R G+ L  L +   KE K   KV++ + ++S WE SA+R E V++
Sbjct: 117 SSSYSVRVVGGSGAMRTGKALPWLTAKGAKERKSSDKVVNLKNNQSYWEKSAKRSEKVTT 176

Query: 171 ---SHSSWEESAKRLEKVTTTNIGRSLEESTKTF-SRTEEHRERVVDMSTGHRNVYAKNQ 226
              S SSWEESA+R  K  ++   R L     T  + TE  +  +VDM    +N Y +  
Sbjct: 177 AETSRSSWEESAERFGKNHSS---RELLPKNGTLRAGTEGSKNIMVDMVESQKNGYMERD 233

Query: 227 GTAEEEGEEMEAVSDSKWNKRRNSFRR--DVKARTEKPEYQRWNRQENSGRTTWKEAAPS 284
            +AEEE   ME + D +W+K +N +    DVK R E+PE +RWN+QEN GR TWKEA  S
Sbjct: 234 ESAEEE---MEVIDDPRWDKIKNRYTETGDVKGRYERPELRRWNKQENWGRKTWKEATES 290

Query: 285 TVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN 344
           T+PK+VGEG+YGVGPVLAALSA  REFYALYVQEGL LS NNRKKKDKKG+EKVLK+AE 
Sbjct: 291 TIPKIVGEGIYGVGPVLAALSAGRREFYALYVQEGLDLSGNNRKKKDKKGFEKVLKLAEK 350

Query: 345 MGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVT 404
           +G+SIK+ SKHDLNMVV NRPHQGLVLDASPLEMVKIKELDP+  + ++  LWVALDEVT
Sbjct: 351 IGLSIKDLSKHDLNMVVDNRPHQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVT 410

Query: 405 DPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSS 464
           DPQNLGAIIRSAYFFG SGVVLCAKNSAPLSGVVSKAS+GSLELMELR+C NMMQFL SS
Sbjct: 411 DPQNLGAIIRSAYFFGVSGVVLCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSS 470

Query: 465 AENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
           AENGW+VLGGSVS +A+PLNEI PG PTILVLGSEGTGLRPLVERSCT L+RIPGNIPV 
Sbjct: 471 AENGWQVLGGSVSPRAIPLNEISPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPVH 530

Query: 525 VTAGEIDDVDAD--GNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIED 580
           VTAGE++DVD          E FQSF+AVESLNVSVAAGVLLHHLVG+   NN  + D
Sbjct: 531 VTAGEVEDVDTSEMDRRCLTEDFQSFLAVESLNVSVAAGVLLHHLVGNSYENNCLLGD 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738755|emb|CBI28000.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224143649|ref|XP_002325029.1| predicted protein [Populus trichocarpa] gi|222866463|gb|EEF03594.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255546313|ref|XP_002514216.1| rRNA methylase, putative [Ricinus communis] gi|223546672|gb|EEF48170.1| rRNA methylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356527755|ref|XP_003532473.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr0955-like [Glycine max] Back     alignment and taxonomy information
>gi|449435780|ref|XP_004135672.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase MAV_0574-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449485822|ref|XP_004157283.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized tRNA/rRNA methyltransferase MAV_0574-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357520841|ref|XP_003630709.1| tRNA/rRNA methyltransferase, putative [Medicago truncatula] gi|355524731|gb|AET05185.1| tRNA/rRNA methyltransferase, putative [Medicago truncatula] Back     alignment and taxonomy information
>gi|3687231|gb|AAC62129.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30680811|ref|NP_849992.1| tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis thaliana] gi|20336661|gb|AAM19346.1|AF499436_1 hypothetical protein [Arabidopsis thaliana] gi|17065308|gb|AAL32808.1| Unknown protein [Arabidopsis thaliana] gi|330251842|gb|AEC06936.1| tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query587
TAIR|locus:2051910589 AT2G19870 [Arabidopsis thalian 0.555 0.553 0.707 6.2e-129
ZFIN|ZDB-GENE-060526-229291 mrm1 "mitochondrial rRNA methy 0.425 0.859 0.330 3.7e-37
UNIPROTKB|F1NX84317 MRM1 "Uncharacterized protein" 0.410 0.760 0.337 3.8e-35
DICTYBASE|DDB_G0277479531 DDB_G0277479 "rRNA methyltrans 0.229 0.254 0.425 9.3e-34
UNIPROTKB|E2RN23346 MRM1 "Uncharacterized protein" 0.451 0.765 0.339 3e-31
UNIPROTKB|A7MBD2360 MRM1 "MRM1 protein" [Bos tauru 0.454 0.741 0.332 1.1e-30
UNIPROTKB|F1S1B8361 MRM1 "Uncharacterized protein" 0.422 0.686 0.343 1.1e-30
RGD|1566232320 Mrm1 "mitochondrial rRNA methy 0.413 0.759 0.355 1.4e-30
MGI|MGI:2443470320 Mrm1 "mitochondrial rRNA methy 0.413 0.759 0.355 3.1e-30
UNIPROTKB|Q6IN84353 MRM1 "rRNA methyltransferase 1 0.425 0.708 0.339 5.3e-30
TAIR|locus:2051910 AT2G19870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1217 (433.5 bits), Expect = 6.2e-129, Sum P(2) = 6.2e-129
 Identities = 237/335 (70%), Positives = 284/335 (84%)

Query:   241 DSKWNKRRNSFRR-DVKAR-TEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVG 298
             +++W++ +N F R DV+ +  +   Y+ WNRQE+ GR TW+EA  S+VP++ GE +YGV 
Sbjct:   261 NTRWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATESSVPRLEGEVVYGVS 320

Query:   299 PVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
             PVLAALS   REFYALYVQEGL LSSNNRKKKDKKG+E+VLK++E +G++IKETSKHDLN
Sbjct:   321 PVLAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEKLGLNIKETSKHDLN 380

Query:   359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
             MV  NRPHQGLVLDASPLE+VK+KELDPIS++E++ SLWVALDEVTDPQNLGAIIRSAYF
Sbjct:   381 MVADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVTDPQNLGAIIRSAYF 440

Query:   419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS 478
             FGA+GVV+CAKNSAPLS VVSKAS+GSLE+MELRYC NMMQFL +SAENGWRV+GGSVS 
Sbjct:   441 FGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEASAENGWRVVGGSVSP 500

Query:   479 KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGN 538
             KAV LNE+ PG PTILVLG+EGTGLRPLVERSCT LVRI GN+P +V   E DD + +G 
Sbjct:   501 KAVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNEVAVTESDDAEGEG- 559

Query:   539 HGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
                   F+SF+AVESLNVSVAAG+ LHHL+G++ S
Sbjct:   560 ------FRSFLAVESLNVSVAAGLFLHHLIGNKAS 588
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006396 "RNA processing" evidence=IEA;ISS
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0008173 "RNA methyltransferase activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=IDA
ZFIN|ZDB-GENE-060526-229 mrm1 "mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NX84 MRM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277479 DDB_G0277479 "rRNA methyltransferase, mitochondrial" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E2RN23 MRM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBD2 MRM1 "MRM1 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1B8 MRM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1566232 Mrm1 "mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2443470 Mrm1 "mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IN84 MRM1 "rRNA methyltransferase 1, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.34LOW CONFIDENCE prediction!
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query587
COG0566260 COG0566, SpoU, rRNA methylases [Translation, ribos 1e-54
TIGR00186237 TIGR00186, rRNA_methyl_3, rRNA methylase, putative 2e-43
pfam00588142 pfam00588, SpoU_methylase, SpoU rRNA Methylase fam 3e-36
PRK11181244 PRK11181, PRK11181, 23S rRNA (guanosine-2'-O-)-met 3e-24
PRK10864346 PRK10864, PRK10864, putative methyltransferase; Pr 8e-11
smart0096770 smart00967, SpoU_sub_bind, RNA 2'-O ribose methylt 2e-09
pfam0803274 pfam08032, SpoU_sub_bind, RNA 2'-O ribose methyltr 4e-09
PRK11081229 PRK11081, PRK11081, tRNA guanosine-2'-O-methyltran 7e-05
>gnl|CDD|223640 COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score =  185 bits (472), Expect = 1e-54
 Identities = 87/276 (31%), Positives = 122/276 (44%), Gaps = 46/276 (16%)

Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
           + G   VL AL++   +   + V EG               +E++L +A   GI +   S
Sbjct: 24  IEGEHAVLEALASG-PKIVRILVTEGR-----------LPRFEELLALAAAKGIPVYVVS 71

Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
           +  L+ + G   HQG+V          + +L     D +   L + LD VTDP NLGAII
Sbjct: 72  EAILDKLSGTENHQGIVAVVKKRRYPLLDDLL----DAEAQPLLLVLDGVTDPHNLGAII 127

Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMEL-RYCNNMMQFLVSSAENGWRVL 472
           R+A  FG  GV+L  + + PL+  V +AS+G+   + + R  N     L    E G+ V+
Sbjct: 128 RTADAFGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIRVTNLARTLLELLKEAGFWVV 187

Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
             S     V L E    + T LVLG+EG GL  L+      LVRIP              
Sbjct: 188 ATS-LDGEVDLYETDLPKKTALVLGNEGEGLSRLLLEHADQLVRIPM------------- 233

Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
                  G          VESLNVSVAAG+LL+   
Sbjct: 234 ------AGK---------VESLNVSVAAGILLYEAR 254

Length = 260
>gnl|CDD|129290 TIGR00186, rRNA_methyl_3, rRNA methylase, putative, group 3 Back     alignment and domain information
>gnl|CDD|216010 pfam00588, SpoU_methylase, SpoU rRNA Methylase family Back     alignment and domain information
>gnl|CDD|183021 PRK11181, PRK11181, 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|236779 PRK10864, PRK10864, putative methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|214943 smart00967, SpoU_sub_bind, RNA 2'-O ribose methyltransferase substrate binding Back     alignment and domain information
>gnl|CDD|203842 pfam08032, SpoU_sub_bind, RNA 2'-O ribose methyltransferase substrate binding Back     alignment and domain information
>gnl|CDD|236837 PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 587
COG0566260 SpoU rRNA methylases [Translation, ribosomal struc 100.0
PRK11181244 23S rRNA (guanosine-2'-O-)-methyltransferase; Prov 100.0
PRK10864346 putative methyltransferase; Provisional 100.0
TIGR00186237 rRNA_methyl_3 rRNA methylase, putative, group 3. t 100.0
KOG0838271 consensus RNA Methylase, SpoU family [RNA processi 100.0
PRK11081229 tRNA guanosine-2'-O-methyltransferase; Provisional 100.0
PF00588142 SpoU_methylase: SpoU rRNA Methylase family; InterP 100.0
TIGR00185153 rRNA_methyl_2 rRNA methylase, putative, group 2. t 100.0
PRK10358157 putative rRNA methylase; Provisional 100.0
KOG2506371 consensus SpoU rRNA Methylase family protein [Tran 99.97
TIGR00050233 rRNA_methyl_1 RNA methyltransferase, TrmH family, 99.95
PRK15114245 tRNA (cytidine/uridine-2'-O-)-methyltransferase Tr 99.95
PRK10433228 putative RNA methyltransferase; Provisional 99.91
COG0219155 CspR Predicted rRNA methylase (SpoU class) [Transl 99.87
COG0565242 LasT rRNA methylase [Translation, ribosomal struct 99.75
KOG08391477 consensus RNA Methylase, SpoU family [RNA processi 99.57
PF0803276 SpoU_sub_bind: RNA 2'-O ribose methyltransferase s 99.29
PRK03958176 tRNA 2'-O-methylase; Reviewed 97.58
COG4080147 SpoU rRNA Methylase family enzyme [General functio 97.08
PF09936185 Methyltrn_RNA_4: SAM-dependent RNA methyltransfera 95.51
COG1303179 Uncharacterized protein conserved in archaea [Func 95.5
PRK12703 339 tRNA 2'-O-methylase; Reviewed 93.93
PRK0101899 50S ribosomal protein L30e; Reviewed 92.06
PF0124895 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/G 91.26
PRK1360084 putative ribosomal protein L7Ae-like; Provisional 90.63
KOG0838271 consensus RNA Methylase, SpoU family [RNA processi 90.35
PF04705115 TSNR_N: Thiostrepton-resistance methylase, N termi 89.93
PRK0728398 hypothetical protein; Provisional 89.47
PF09895106 DUF2122: RecB-family nuclease (DUF2122); InterPro: 88.58
PRK07714100 hypothetical protein; Provisional 87.86
PRK1360182 putative L7Ae-like ribosomal protein; Provisional 87.23
PTZ00106108 60S ribosomal protein L30; Provisional 87.06
TIGR03677117 rpl7ae 50S ribosomal protein L7Ae. Multifunctional 86.57
PRK1360282 putative ribosomal protein L7Ae-like; Provisional 85.42
PRK04175122 rpl7ae 50S ribosomal protein L7Ae; Validated 85.2
PRK0668382 hypothetical protein; Provisional 84.53
PRK05583104 ribosomal protein L7Ae family protein; Provisional 83.04
COG4752190 Uncharacterized protein conserved in bacteria [Fun 81.38
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-53  Score=427.28  Aligned_cols=256  Identities=34%  Similarity=0.445  Sum_probs=226.1

Q ss_pred             cCCChhhhhhhhhhcCCCCcccccCCCCCCCcccCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHH
Q 007847          258 RTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK  337 (587)
Q Consensus       258 s~~np~~qrw~~l~~~~rk~~~~age~~~p~~~~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~  337 (587)
                      +.+|+..+.+.++    |   ++.+++        ++||.|+|.+||++++ .+..+|+++...           ..+.+
T Consensus         3 s~~n~~~~~~~~~----r---~~~~~~--------~~~G~~~v~~al~~~~-~i~~i~~~~~~~-----------~~~~~   55 (260)
T COG0566           3 SPANPRVKALKKL----R---GRAGEF--------LIEGEHAVLEALASGP-KIVRILVTEGRL-----------PRFEE   55 (260)
T ss_pred             CcchhhhHHHHHh----h---cccCcE--------EEeeHHHHHHHHhcCC-CceEEEEecccc-----------hhHHH
Confidence            5678888988886    1   334456        5999999999999998 699999998642           34677


Q ss_pred             HHHHHHhcCCcEEEcCHHHHhhhhCCCCCceEEEEecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHHHH
Q 007847          338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAY  417 (587)
Q Consensus       338 Il~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVVa~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRSA~  417 (587)
                      ++..+...+++++.+++..|+.++++.+||||++++.+..+....++...    ...+++|+||+|+||+|+|||||||+
T Consensus        56 ~~~~~~~~~~~~~~v~~~~l~~~~~~~~hqGi~a~~~~~~~~~~~~~~~~----~~~~l~lvLd~V~DP~NlGaIiRtA~  131 (260)
T COG0566          56 LLALAAAKGIPVYVVSEAILDKLSGTENHQGIVAVVKKRRYPLLDDLLDA----EAQPLLLVLDGVTDPHNLGAIIRTAD  131 (260)
T ss_pred             HHHHHHhcCCeEEEECHHHHHHHhCCCCCCeEEEEEecccccchhhhhhc----ccCCEEEEEecCcCCcchhhHHhhHH
Confidence            88888899999999999999999999999999999998876655444321    25689999999999999999999999


Q ss_pred             HhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecC-HHHHHHHhhhcCcEEEEEecCCCCccCCCCCCCCCEEEEE
Q 007847          418 FFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN-MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVL  496 (587)
Q Consensus       418 AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~n-l~~~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~p~aLVL  496 (587)
                      |||+++||++.+++++++++++|+|+||+|++|++.+.| ...+++.+++.||+|||++.++ ..++++.++++|++|||
T Consensus       132 a~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~~~n~~~~~~~~~~~~G~~v~~t~~~~-~~~~~~~~~~~~~aLvl  210 (260)
T COG0566         132 AFGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIRVTNLARTLLELLKEAGFWVVATSLDG-EVDLYETDLPKKTALVL  210 (260)
T ss_pred             HhCCCEEEECCCccCCccceeEEecCChheeceeEEEeccHHHHHHHHHHcCeEEEEECCCC-CcchhhccccCCEEEEE
Confidence            999999999999999999999999999999999999995 5567666777999999999864 78899999999999999


Q ss_pred             cCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCccC
Q 007847          497 GSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS  573 (587)
Q Consensus       497 GnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~~  573 (587)
                      ||||.|||+++++.||++|+|||.                            |.++|||||||+||+|||+.||+..
T Consensus       211 G~Eg~Gls~~~~~~~D~~v~IPm~----------------------------G~v~SLNVsvAagI~Lye~~rq~~~  259 (260)
T COG0566         211 GNEGEGLSRLLLEHADQLVRIPMA----------------------------GKVESLNVSVAAGILLYEARRQRRA  259 (260)
T ss_pred             CCCCCCcCHHHHhhCCEEEEecCC----------------------------CCcchhHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999995                            4899999999999999999999864

>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional Back     alignment and domain information
>PRK10864 putative methyltransferase; Provisional Back     alignment and domain information
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3 Back     alignment and domain information
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification] Back     alignment and domain information
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional Back     alignment and domain information
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ] Back     alignment and domain information
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2 Back     alignment and domain information
>PRK10358 putative rRNA methylase; Provisional Back     alignment and domain information
>KOG2506 consensus SpoU rRNA Methylase family protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1 Back     alignment and domain information
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional Back     alignment and domain information
>PRK10433 putative RNA methyltransferase; Provisional Back     alignment and domain information
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0839 consensus RNA Methylase, SpoU family [RNA processing and modification] Back     alignment and domain information
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications Back     alignment and domain information
>PRK03958 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only] Back     alignment and domain information
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function Back     alignment and domain information
>COG1303 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>PRK01018 50S ribosomal protein L30e; Reviewed Back     alignment and domain information
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK13600 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification] Back     alignment and domain information
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO) Back     alignment and domain information
>PRK07283 hypothetical protein; Provisional Back     alignment and domain information
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function Back     alignment and domain information
>PRK07714 hypothetical protein; Provisional Back     alignment and domain information
>PRK13601 putative L7Ae-like ribosomal protein; Provisional Back     alignment and domain information
>PTZ00106 60S ribosomal protein L30; Provisional Back     alignment and domain information
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae Back     alignment and domain information
>PRK13602 putative ribosomal protein L7Ae-like; Provisional Back     alignment and domain information
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated Back     alignment and domain information
>PRK06683 hypothetical protein; Provisional Back     alignment and domain information
>PRK05583 ribosomal protein L7Ae family protein; Provisional Back     alignment and domain information
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query587
1gz0_A253 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb 2e-14
2i6d_A257 The Structure Of A Putative Rna Methyltransferase O 2e-08
1zjr_A211 Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODI 2e-06
1x7p_A287 Crystal Structure Of The Spou Methyltransferase Avi 5e-05
1x7o_A287 Crystal Structure Of The Spou Methyltransferase Avi 8e-05
>pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb Length = 253 Back     alignment and structure 
Iteration: 1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 115/278 (41%), Gaps = 42/278 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
           E +YG+  V A L      F  +++ +G         ++DK+    ++   E+ G+ I+ 
Sbjct: 13  EXIYGIHAVQALLERAPERFQEVFILKG---------REDKR-LLPLIHALESQGVVIQL 62
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
            ++  L+       HQG++    P    +  +L  + A  DQ  L + LD VTDP NLGA
Sbjct: 63  ANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLI-LDGVTDPHNLGA 121
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL-VSSAENGWR 470
            +RSA   G   V++    SA L+    K + G+ E + L    N+ +       EN W 
Sbjct: 122 CLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTXRXLQEENIWI 181
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
           V  G+       L +        LV G+EG G R L    C  L+ IP        AG  
Sbjct: 182 V--GTAGEADHTLYQSKXTGRLALVXGAEGEGXRRLTREHCDELISIP-------XAG-- 230
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
                              +V SLNVSVA G+ L   V
Sbjct: 231 -------------------SVSSLNVSVATGICLFEAV 249
>pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The Trmh Family From Porphyromonas Gingivalis Length = 257 Back     alignment and structure
>pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING ENZYME Length = 211 Back     alignment and structure
>pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes In Complex With The Cofactor Adomet Length = 287 Back     alignment and structure
>pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From Streptomyces Viridochromogenes Length = 287 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query587
1gz0_A253 Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O 8e-60
3nk6_A277 23S rRNA methyltransferase; nosiheptide, nosihepti 6e-49
1v2x_A194 TRNA (GM18) methyltransferase; DEEP trefoil knot, 6e-36
1x7o_A287 Avirb, rRNA methyltransferase; SPOU, C-terminal kn 7e-36
2ha8_A184 TAR (HIV-1) RNA loop binding protein; methyltransf 2e-34
1ipa_A274 RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref 4e-33
1zjr_A211 TRNA (guanosine-2'-O-)-methyltransferase; methylas 6e-33
2i6d_A257 RNA methyltransferase, TRMH family; stuctural geno 2e-30
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Length = 253 Back     alignment and structure
 Score =  198 bits (506), Expect = 8e-60
 Identities = 71/271 (26%), Positives = 113/271 (41%), Gaps = 40/271 (14%)

Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
           +YG+  V A L      F  +++ +G          +DK+    ++   E+ G+ I+  +
Sbjct: 15  IYGIHAVQALLERAPERFQEVFILKGR---------EDKR-LLPLIHALESQGVVIQLAN 64

Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
           +  L+       HQG++    P    +  +L  + A  DQ    + LD VTDP NLGA +
Sbjct: 65  RQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQP-FLLILDGVTDPHNLGACL 123

Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
           RSA   G   V++    SA L+    K + G+ E + L    N+ + +    E    ++G
Sbjct: 124 RSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIVG 183

Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
            +  +    L +        LV+G+EG G+R L    C  L+ IP        AG     
Sbjct: 184 TAGEA-DHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIP-------MAGS---- 231

Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
                            V SLNVSVA G+ L
Sbjct: 232 -----------------VSSLNVSVATGICL 245
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Length = 277 Back     alignment and structure
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Length = 194 Back     alignment and structure
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Length = 287 Back     alignment and structure
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Length = 184 Back     alignment and structure
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Length = 274 Back     alignment and structure
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Length = 211 Back     alignment and structure
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis} Length = 257 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query587
3nk6_A277 23S rRNA methyltransferase; nosiheptide, nosihepti 100.0
1ipa_A274 RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref 100.0
1gz0_A253 Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O 100.0
1x7o_A287 Avirb, rRNA methyltransferase; SPOU, C-terminal kn 100.0
2i6d_A257 RNA methyltransferase, TRMH family; stuctural geno 100.0
3e5y_A160 TRMH family RNA methyltransferase; ssgcid, protein 100.0
3n4j_A165 RNA methyltransferase; center for structural genom 100.0
3l8u_A182 SMU.1707C, putative rRNA methylase; methyltransfer 100.0
1v2x_A194 TRNA (GM18) methyltransferase; DEEP trefoil knot, 100.0
2ha8_A184 TAR (HIV-1) RNA loop binding protein; methyltransf 100.0
1zjr_A211 TRNA (guanosine-2'-O-)-methyltransferase; methylas 100.0
3kty_A173 Probable methyltransferase; alpha-beta-alpha sandw 100.0
3ilk_A244 Uncharacterized tRNA/RRNA methyltransferase HI038; 99.97
3onp_A249 TRNA/RRNA methyltransferase (SPOU); structural gen 99.97
3ic6_A223 Putative methylase family protein; putative methyl 99.96
3dcm_X192 AdoMet, uncharacterized protein TM_1570; trefoil k 99.44
2o3a_A178 UPF0106 protein AF_0751; structural genomics, unkn 94.91
2yy8_A201 ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, 94.32
1w41_A101 50S ribosomal protein L30E; electrostatic interact 87.72
3cpq_A110 50S ribosomal protein L30E; RNA-protein, elongatio 87.68
3v7e_A82 Ribosome-associated protein L7AE-like; RNA-protein 86.42
4a18_G104 RPL30; ribosome, eukaryotic initiation factor 6, E 86.01
3j21_Z99 50S ribosomal protein L30E; archaea, archaeal, KIN 85.71
3on1_A101 BH2414 protein; structural genomics, PSI-2, protei 85.36
3u5e_c105 L32, RP73, YL38, 60S ribosomal protein L30; transl 83.89
3v7q_A101 Probable ribosomal protein YLXQ; L7AE superfamily, 82.7
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-53  Score=430.08  Aligned_cols=255  Identities=20%  Similarity=0.245  Sum_probs=217.8

Q ss_pred             cCCChhhhhhhhhhcCCCCcccccCCCCCCCcccCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHH
Q 007847          258 RTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK  337 (587)
Q Consensus       258 s~~np~~qrw~~l~~~~rk~~~~age~~~p~~~~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~  337 (587)
                      |.+||+++.|.+|. + +.| ++.+.|        +|||.|+|.+||+++. .+..||++++..         +.   .+
T Consensus        12 S~~n~~iK~~~~L~-~-k~R-~~~g~f--------lveG~~~V~eaL~~~~-~i~~l~~~~~~~---------~~---~~   67 (277)
T 3nk6_A           12 NASDPAVQRIIDVT-K-HSR-ASIKTT--------LIEDTEPLMECIRAGV-QFIEVYGSSGTP---------LD---PA   67 (277)
T ss_dssp             BCSSCSHHHHHHHH-H-TC-----CEE--------EEESHHHHHHHHHTTC-CEEEEEEETTSC---------CC---HH
T ss_pred             CCCChHHHHHHHHh-h-hhH-hhcCCE--------EEEeHHHHHHHHhCCC-CeEEEEEeCCcc---------Cc---HH
Confidence            78999999999987 3 333 566777        5999999999999987 599999988642         11   45


Q ss_pred             HHHHHHhcCCcEEEcCHHHHhhhhCCCCCceEEEEecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHHHH
Q 007847          338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAY  417 (587)
Q Consensus       338 Il~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVVa~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRSA~  417 (587)
                      +++.+++.+++++.+++++|++|+++.+||||+|++.+++..++.++..     ...+ +||||+|+||+|+|+|+|||+
T Consensus        68 l~~~~~~~~~~v~~v~~~~l~~ls~~~~~qGv~a~~~~~~~~~l~~~~~-----~~~~-~lvLd~v~dP~NlGaI~Rta~  141 (277)
T 3nk6_A           68 LLDLCRQREIPVRLIDVSIVNQLFKAERKAKVFGIARVPRPARLADIAE-----RGGD-VVVLDGVKIVGNIGAIVRTSL  141 (277)
T ss_dssp             HHHHHHHTTCCEEEECHHHHTTCC-----CCEEEEEECCCCCCHHHHHH-----HCSC-EEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEECHHHHHHhhCCCCCCeEEEEEecCCCCCHHHHhc-----cCCC-EEEEEcCCCcchHHHHHHHHH
Confidence            7777888999999999999999999999999999998764444443321     1346 999999999999999999999


Q ss_pred             HhCCCeEEEcc-CCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEecCCCCccCCC-CCCCCCEEEE
Q 007847          418 FFGASGVVLCA-KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE-IPPGQPTILV  495 (587)
Q Consensus       418 AFGa~gVIL~~-~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~e-v~~~~p~aLV  495 (587)
                      +||+++||+++ +++++++|+++|+|+||+|++|++.+ |+.++++.+++.||+|||++.. +..++++ +++++|++||
T Consensus       142 a~G~~~vil~~~~~~~~~~~~v~ras~Ga~~~l~i~~~-~l~~~l~~lk~~g~~v~~~~~~-~~~~~~~~~~~~~~~alv  219 (277)
T 3nk6_A          142 ALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLA-DREEAVSFLRDNDIALMVLDTD-GDLGVKDLGDRADRMALV  219 (277)
T ss_dssp             HTTCSEEEEESCCCSCTTCHHHHHHTTTCTTTSCEEEC-CHHHHHHHHHHTTCCEEEECTT-CSEEGGGGGGCCSCCEEE
T ss_pred             HcCCCEEEEcCCCCcCCCCHHHHHHhCChhhcCeEEEE-CHHHHHHHHHhcCCeEEEEecC-CCcchhhhhccCCCEEEE
Confidence            99999999999 78899999999999999999999999 9999999999999999999875 4678999 9999999999


Q ss_pred             EcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCcc
Q 007847          496 LGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV  572 (587)
Q Consensus       496 LGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~  572 (587)
                      ||||+.||++++++.||+.|+|||.                            |.++|||||||+||+|||+.||+.
T Consensus       220 ~GnE~~Gls~~~~~~~d~~v~IPm~----------------------------g~~~SLNvsvAaaI~lye~~rq~~  268 (277)
T 3nk6_A          220 FGSEKGGPSGLFQEASAGTVSIPML----------------------------SSTESLNVSVSVGIALHERSARNF  268 (277)
T ss_dssp             EEBTTTBSCHHHHHHCSCEEECCCS----------------------------STTCCCCHHHHHHHHHHHTHHHHH
T ss_pred             ECCCCCCCCHHHHHhCCeEEEECCC----------------------------CCCCCchHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999995                            379999999999999999999975
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Back     alignment and structure
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Back     alignment and structure
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Back     alignment and structure
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis} Back     alignment and structure
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0 Back     alignment and structure
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A* Back     alignment and structure
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0 Back     alignment and structure
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Back     alignment and structure
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Back     alignment and structure
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Back     alignment and structure
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis} Back     alignment and structure
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae} Back     alignment and structure
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides} Back     alignment and structure
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090} Back     alignment and structure
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} Back     alignment and structure
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8 Back     alignment and structure
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii} Back     alignment and structure
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A Back     alignment and structure
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii} Back     alignment and structure
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis} Back     alignment and structure
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6 Back     alignment and structure
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans} Back     alignment and structure
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2 Back     alignment and structure
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 587
d1gz0a1166 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Esch 1e-23
d1mxia_156 c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransf 4e-18
d1v2xa_191 c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH 1e-15
d1ipaa1158 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal doma 9e-15
d1gz0a276 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escheri 1e-11
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: RlmB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 95.7 bits (237), Expect = 1e-23
 Identities = 53/187 (28%), Positives = 76/187 (40%), Gaps = 30/187 (16%)

Query: 382 KELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKA 441
            +L  + A  DQ    + LD VTDP NLGA +RSA   G   V++    SA L+    K 
Sbjct: 6   NDLPDLIASLDQ-PFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKV 64

Query: 442 SSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGT 501
           + G+ E + L    N+ + +    +     + G+       L +        LV+G+EG 
Sbjct: 65  ACGAAESVPLIRVTNLARTM-RMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGE 123

Query: 502 GLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAG 561
           G+R L    C  L+ IP                  G+            V SLNVSVA G
Sbjct: 124 GMRRLTREHCDELISIPMA----------------GS------------VSSLNVSVATG 155

Query: 562 VLLHHLV 568
           + L   V
Sbjct: 156 ICLFEAV 162
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]} Length = 156 Back     information, alignment and structure
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]} Length = 191 Back     information, alignment and structure
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 158 Back     information, alignment and structure
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 76 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query587
d1gz0a1166 RlmB, C-terminal domain {Escherichia coli [TaxId: 100.0
d1ipaa1158 RrmA (RrmH), C-terminal domain {Thermus thermophil 100.0
d1v2xa_191 tRNA (Gm18) methyltransferase TrmH {Thermus thermo 100.0
d1mxia_156 Hypothetical tRNA/rRNA methyltransfease HI0766 (Yi 99.97
d1gz0a276 RlmB, N-terminal domain {Escherichia coli [TaxId: 99.44
d1ipaa2105 RrmA (RrmH), N-terminal domain {Thermus thermophil 99.06
d2o3aa1167 Uncharacterized protein AF0751 {Archaeoglobus fulg 93.54
d1t0kb_97 Eukaryotic ribosomal protein L30 (L30e) {Baker's y 91.84
d1w3ex198 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 91.57
d2bo1a1100 Eukaryotic ribosomal protein L30 (L30e) {Archaeon 89.55
d2vgna3104 Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} 82.74
d1vqof1119 Ribosomal protein L7ae {Archaeon Haloarcula marism 80.43
d1vhka2180 Hypothetical protein YqeU {Bacillus subtilis [TaxI 80.31
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: RlmB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1e-38  Score=295.23  Aligned_cols=151  Identities=32%  Similarity=0.448  Sum_probs=143.1

Q ss_pred             CCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEE
Q 007847          393 QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL  472 (587)
Q Consensus       393 ~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vv  472 (587)
                      +.|++|+||+|+||+|+|+|+|||++||+++|+++.++++++++++.|+|+|+.+++|+..+.++.++++.+++.++.++
T Consensus        16 ~~~~~vvLd~i~~p~N~GaiiRta~afG~~~v~~~~~~~~~~~~~~~r~s~g~~~~v~~~~~~~~~~~l~~~~~~~~~~~   95 (166)
T d1gz0a1          16 DQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIV   95 (166)
T ss_dssp             SSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEESCHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhcCCceeeeecccccccchhhheeccCcceEeceeecCCHHHHHHHhcccccccc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCC
Q 007847          473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE  552 (587)
Q Consensus       473 gts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~Ve  552 (587)
                      +++.. ...++.++++++|++||||||+.|||+++++.||+.|+|||.                            +.++
T Consensus        96 ~~~~~-~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~----------------------------~~~~  146 (166)
T d1gz0a1          96 GTAGE-ADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMA----------------------------GSVS  146 (166)
T ss_dssp             EECTT-CSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCS----------------------------SSSC
T ss_pred             ccccc-ccccHHHhhccCCeEEEeccCcCCCCHHHHHhCCEEEEEcCc----------------------------CCCC
Confidence            98754 567889999999999999999999999999999999999995                            3799


Q ss_pred             cccHHHHHHHHHHHHHcCcc
Q 007847          553 SLNVSVAAGVLLHHLVGHQV  572 (587)
Q Consensus       553 SLNVSVAAgIlLYEl~rqr~  572 (587)
                      |||||+|+||+|||+.|||.
T Consensus       147 SLNvs~A~~I~lye~~rqr~  166 (166)
T d1gz0a1         147 SLNVSVATGICLFEAVRQRS  166 (166)
T ss_dssp             CCCHHHHHHHHHHHHHHHTC
T ss_pred             ceeHHHHHHHHHHHHHHccC
Confidence            99999999999999999973
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ipaa2 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t0kb_ d.79.3.1 (B:) Eukaryotic ribosomal protein L30 (L30e) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w3ex1 d.79.3.1 (X:1-98) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d2bo1a1 d.79.3.1 (A:1-100) Eukaryotic ribosomal protein L30 (L30e) {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d2vgna3 d.79.3.2 (A:278-381) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1vqof1 d.79.3.1 (F:1-119) Ribosomal protein L7ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure