Citrus Sinensis ID: 007922

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-----
MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSR
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEEEEEcccccHHHcccHHHHHccccEEccccccccHHHHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEEccccEEEEEEEEEcccccHHHHHHHcccccccEEcHHHHHHHHHHHHHHHHHcccEEEEccEEEccccEEEEEEEEEEEccEEEEEEEccccccccccccccEEEEEccccccccccHHHHHHHHHHHHcccccccEEEEEccccccccEEEEEEEEEEcccEEEEEEEEcccccccccccEEEEEEEEEEcccccccEEEEEEEEEcEEEEEEEEEEcccccccccccEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEccccccEEcccccccEEccccccccEEEEEEEEEEcccccccccEEEEEEEEEEccccccccEEEEEEEEEEEEEEcccEEEEcc
cccccccEEEEccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHHHccccccEEEEEEEEcccccEccccccHHHHHHHHHHHHHccccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccEEEEEccccccEEEEEEEEcccEEEEEEEEccccccHHHHHHHHHcccccEccHHHHHHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEEEccccEEEEEEEEccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEEEEEEccccEEEEEEEEEccccccccccEEEEEEEEEccccccccEEEEEEEEccEEEEEEEEEccccEcccccEEEEEEEEEEEccccccEccccccccccEEEEEcccEEEcEEcccccEEEEEEEEEEEEEEcccccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEEEEEEEccccccEEEEEEEEEEEEEEccccHEEccc
mplrnddvrfissplkippfrpeppvpffaQTLTKSKNSLSHLIYSlnestrstepFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLslnqssaefpaqselsTQLQqkaqqphsvsrsdeERVLISEVLVrnkdgeelerkDLETEALTALKACRANSALTVREVQEDVHRIIDsgyfcscmpvavdtrdGIRLVfqvepnqefhglvceganvlptkfvedafrdgygkvvNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRfldrktgeptkgktrpeTILRQLTTKKGQVYSMLQGKRDVETVLTMGImedvsiipqpagdtgkvdLIMNVverpsggfsagggissgitsgplsglIGSFAYshrnvfgrnqKLNIslergqidsifrinytdpwiegddkrtsrtimvqnsrtpgthvhgnqpdnssltigrvtagmefsrpirpkwsgtvglifqhsgardekgnpiikdfysspltasgktnDEMLIAKFEsvytgsgdqgsSMFVFNMeqglpvwpewlffnRVNARarkgveigparlllsr
mplrnddvrfissplkippfrpePPVPFFAQTLTKSKNSLSHLIYSLnestrstepFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKaqqphsvsrsdeervlisevlvrnkdgeelerkdlETEALTALkacransaltvreVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAfrdgygkvvnirrlDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAevnnisirfldrktgeptkgktrpetilrqlttkkgqvysmlqgKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRinytdpwiegddkrtsRTIMVQnsrtpgthvhgnqpdnssLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHsgardekgnpiIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNArarkgveigparlllsr
MPLRNDDVRFISSPLKIppfrpeppvpffAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPsggfsagggissgitsgplsgligsFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSR
****************************F***********SHLIYSL**********TRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASL************************************************************ALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLD****************LRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVV***********************GLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEG********************************IGRVTAGMEFSRPIRPKWSGTVGLIFQHSG*******PIIKDFYS***********EMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIG********
**********************************************************************************************************************************RSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSR
MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQ******************************ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSR
*****DDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSR
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MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTGAVDTLVNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query585 2.2.26 [Sep-21-2011]
Q9C5J8 732 Outer envelope protein 80 yes no 0.989 0.790 0.719 0.0
Q6H7M7 665 Outer envelope protein 80 yes no 0.770 0.678 0.783 0.0
A2X208 665 Outer envelope protein 80 N/A no 0.770 0.678 0.783 0.0
P0C891158 Outer envelope protein 80 N/A no 0.201 0.746 0.328 1e-17
Q43715 809 Protein TOC75, chloroplas N/A no 0.644 0.466 0.225 7e-11
Q84Q83 817 Protein TOC75, chloroplas no no 0.529 0.379 0.220 7e-09
Q9STE8 818 Protein TOC75-3, chloropl no no 0.526 0.376 0.231 2e-08
Q9K1H0 797 Outer membrane protein as yes no 0.208 0.153 0.286 0.0003
>sp|Q9C5J8|OEP80_ARATH Outer envelope protein 80, chloroplastic OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1 Back     alignment and function desciption
 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/614 (71%), Positives = 495/614 (80%), Gaps = 35/614 (5%)

Query: 1   MPLRNDDVRFISSPLKIPPFRPEPPVPF----------FAQTLTKSKNSLSHLIYSLNE- 49
           M   NDDVRF SS ++I    P+               F   L+ ++NSL+ ++ SL   
Sbjct: 1   MHCHNDDVRFSSSSIRIHSPSPKEQHSLLTNLQSCSKTFVSHLSNTRNSLNQMLQSLKNR 60

Query: 50  ------STRSTEPFTRKLQSFAEHLYGKSVRICSTCLSMTG---------AVDTL--VNF 92
                 S R     T+ L S  + + GKS  I  + +  T           V+T+  ++ 
Sbjct: 61  HTPPPRSVRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQFNWSESRDENVETIRGLSS 120

Query: 93  PLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQP--HSVSRSDEERVLISEVLVRNKDGE 150
           PLLC ASLSL +     P +S  S + +   QQ   HSVSR+ EERVLISEVLVR KDGE
Sbjct: 121 PLLCCASLSLTR-----PNESTQSVEGKDTVQQQKGHSVSRNAEERVLISEVLVRTKDGE 175

Query: 151 ELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVF 210
           ELERKDLE EAL ALKACRANSALT+REVQEDVHRII+SGYFCSC PVAVDTRDGIRL+F
Sbjct: 176 ELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCSCTPVAVDTRDGIRLMF 235

Query: 211 QVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGM 270
           QVEPNQEF GLVCE ANVLP+KF+ +AFRDG+GKV+NI+RL+E ITSINGWYMERGLFG+
Sbjct: 236 QVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEAITSINGWYMERGLFGI 295

Query: 271 VSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSM 330
           VS ++ LSGGI+RLQVAEAEVNNISIRFLDRKTGEPTKGKT PETILRQLTTKKGQVYSM
Sbjct: 296 VSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPETILRQLTTKKGQVYSM 355

Query: 331 LQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGP 390
           LQGKRDV+TVL MGIMEDVSIIPQPAGD+GKVDLIMN VERPSGGFSAGGGISSGITSGP
Sbjct: 356 LQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSGGFSAGGGISSGITSGP 415

Query: 391 LSGLIGSFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNS 450
           LSGLIGSFAYSHRN+FGRNQKLN+SLERGQIDSIFRINYTDPWIEGDDKRTSR+IMVQNS
Sbjct: 416 LSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWIEGDDKRTSRSIMVQNS 475

Query: 451 RTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKD 510
           RTPG  VHGNQPDNSSLTIGRVTAG+E+SRP RPKW+GT GLIFQH+GARDE+GNPIIKD
Sbjct: 476 RTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIFQHAGARDEQGNPIIKD 535

Query: 511 FYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARA 570
           FYSSPLTASGK +DE ++AK ES+YTGSGDQGS+MF FNMEQGLPV PEWL FNRV  RA
Sbjct: 536 FYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGLPVLPEWLCFNRVTGRA 595

Query: 571 RKGVEIGPARLLLS 584
           RKG+ IGPAR L S
Sbjct: 596 RKGIHIGPARFLFS 609
Plays an essential role during early stages of plastid development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6H7M7|OEP80_ORYSJ Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. japonica GN=OEP80 PE=3 SV=2 Back     alignment and function description
>sp|A2X208|OEP80_ORYSI Outer envelope protein 80, chloroplastic OS=Oryza sativa subsp. indica GN=OEP80 PE=3 SV=1 Back     alignment and function description
>sp|P0C891|OEP80_PEA Outer envelope protein 80, chloroplastic (Fragments) OS=Pisum sativum GN=OEP80 PE=1 SV=1 Back     alignment and function description
>sp|Q43715|TOC75_PEA Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1 Back     alignment and function description
>sp|Q84Q83|TOC75_ORYSJ Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2 Back     alignment and function description
>sp|Q9STE8|TC753_ARATH Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1 Back     alignment and function description
>sp|Q9K1H0|BAMA_NEIMB Outer membrane protein assembly factor BamA OS=Neisseria meningitidis serogroup B (strain MC58) GN=bamA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query585
255544822 700 sorting and assembly machinery (sam50) p 0.977 0.817 0.786 0.0
18419973 732 outer envelope protein [Arabidopsis thal 0.989 0.790 0.719 0.0
297808025 732 hypothetical protein ARALYDRAFT_909999 [ 0.981 0.784 0.730 0.0
356547291677 PREDICTED: outer envelope protein of 80 0.941 0.813 0.726 0.0
356557629677 PREDICTED: outer envelope protein of 80 0.938 0.810 0.728 0.0
359478392673 PREDICTED: outer envelope protein of 80 0.926 0.805 0.746 0.0
224075788682 predicted protein [Populus trichocarpa] 0.905 0.777 0.726 0.0
357454321672 Outer envelope protein of 80 kDa [Medica 0.931 0.811 0.721 0.0
449448734 757 PREDICTED: outer envelope protein 80, ch 0.827 0.639 0.770 0.0
449502616 757 PREDICTED: LOW QUALITY PROTEIN: outer en 0.827 0.639 0.770 0.0
>gi|255544822|ref|XP_002513472.1| sorting and assembly machinery (sam50) protein, putative [Ricinus communis] gi|223547380|gb|EEF48875.1| sorting and assembly machinery (sam50) protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/589 (78%), Positives = 500/589 (84%), Gaps = 17/589 (2%)

Query: 1   MPLRNDDVRFISSPLKIPPFRPEPPVPFFAQTLTKSKNSLSHLIYSLNESTRSTEPFTRK 60
           MP +ND VRF SS LKIP   P       A  L+ +K S ++ I SL   TRS    +R 
Sbjct: 1   MP-QNDTVRFTSSSLKIPLLPPPQQQ-QQAPQLSYTKISFTNFIDSL--ITRSKIHISRS 56

Query: 61  LQSFAEHLYGKSVRICSTCLSMTGAVDTLVN-----FPLLCSASLSLNQSSAEFPAQSEL 115
           + S  +        +C   LS+  + DT+++      P+LCSASLSL Q     P +SE 
Sbjct: 57  VNSPRKLTL---PLLCFASLSLPQSKDTVISESHTQSPILCSASLSLTQ-----PGESEN 108

Query: 116 STQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALT 175
               Q+ +    S SR DEERVLISEVLVRNKDGEELERKDLE EA+ ALKACRANSALT
Sbjct: 109 IVTQQKGSGGGLSGSRHDEERVLISEVLVRNKDGEELERKDLEAEAVAALKACRANSALT 168

Query: 176 VREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVE 235
           VREVQEDVHRIIDSGYFCSC PVAVDTRDGIRLVFQVEPNQEFHGLVCEGA+VLPTKF++
Sbjct: 169 VREVQEDVHRIIDSGYFCSCTPVAVDTRDGIRLVFQVEPNQEFHGLVCEGASVLPTKFLQ 228

Query: 236 DAFRDGYGKVVNIRRLDEVITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNIS 295
           DAFR+GYGKVVNIR LD+VITSINGWYMERGLFG+VSGVEILSGGI+RLQVAEAEVNNIS
Sbjct: 229 DAFREGYGKVVNIRHLDDVITSINGWYMERGLFGLVSGVEILSGGILRLQVAEAEVNNIS 288

Query: 296 IRFLDRKTGEPTKGKTRPETILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQP 355
           IRFLDRKTGEPTKGKT+PETILRQLTTKKGQVYSMLQGKRDV+TVLTMGIMEDVSIIPQP
Sbjct: 289 IRFLDRKTGEPTKGKTKPETILRQLTTKKGQVYSMLQGKRDVDTVLTMGIMEDVSIIPQP 348

Query: 356 AGDTGKVDLIMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFAYSHRNVFGRNQKLNIS 415
           AGDTGKVDL+MNVVERPSGGFSAGGGISSGITSGPLSGLIGSF YSHRNVFGRNQKLNIS
Sbjct: 349 AGDTGKVDLVMNVVERPSGGFSAGGGISSGITSGPLSGLIGSFTYSHRNVFGRNQKLNIS 408

Query: 416 LERGQIDSIFRINYTDPWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAG 475
           LERGQIDSIFRINYTDPWI+GDDKRTSRTIMVQNSRTPG  VH  QP NSSLTIGRVTAG
Sbjct: 409 LERGQIDSIFRINYTDPWIQGDDKRTSRTIMVQNSRTPGNLVHSYQPGNSSLTIGRVTAG 468

Query: 476 MEFSRPIRPKWSGTVGLIFQHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVY 535
           +EFSRP+RPKWSGT GLIFQH+GA DEKGNPIIKD YSSPLTASGKT+D ML+AKFESVY
Sbjct: 469 VEFSRPLRPKWSGTAGLIFQHAGAHDEKGNPIIKDHYSSPLTASGKTHDNMLLAKFESVY 528

Query: 536 TGSGDQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEIGPARLLLS 584
           TGSGD GSSMFV N+EQGLP+WPEWLFFNRVNARARKGVEIGPA  LLS
Sbjct: 529 TGSGDHGSSMFVLNVEQGLPLWPEWLFFNRVNARARKGVEIGPALFLLS 577

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18419973|ref|NP_568378.1| outer envelope protein [Arabidopsis thaliana] gi|75168961|sp|Q9C5J8.1|OEP80_ARATH RecName: Full=Outer envelope protein 80, chloroplastic; AltName: Full=Chloroplastic outer envelope protein of 80 kDa; Short=AtOEP80; AltName: Full=Protein TOC75-V; Short=AtToc75-V gi|13430586|gb|AAK25915.1|AF360205_1 unknown protein [Arabidopsis thaliana] gi|14532858|gb|AAK64111.1| unknown protein [Arabidopsis thaliana] gi|332005348|gb|AED92731.1| outer envelope protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297808025|ref|XP_002871896.1| hypothetical protein ARALYDRAFT_909999 [Arabidopsis lyrata subsp. lyrata] gi|297317733|gb|EFH48155.1| hypothetical protein ARALYDRAFT_909999 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356547291|ref|XP_003542049.1| PREDICTED: outer envelope protein of 80 kDa, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356557629|ref|XP_003547118.1| PREDICTED: outer envelope protein of 80 kDa, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|359478392|ref|XP_002285507.2| PREDICTED: outer envelope protein of 80 kDa, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|224075788|ref|XP_002304768.1| predicted protein [Populus trichocarpa] gi|222842200|gb|EEE79747.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357454321|ref|XP_003597441.1| Outer envelope protein of 80 kDa [Medicago truncatula] gi|355486489|gb|AES67692.1| Outer envelope protein of 80 kDa [Medicago truncatula] Back     alignment and taxonomy information
>gi|449448734|ref|XP_004142120.1| PREDICTED: outer envelope protein 80, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449502616|ref|XP_004161694.1| PREDICTED: LOW QUALITY PROTEIN: outer envelope protein 80, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query585
TAIR|locus:2183164 732 OEP80 "outer envelope protein 0.938 0.75 0.714 1.7e-208
TAIR|locus:2081423 362 AT3G44160 "AT3G44160" [Arabido 0.307 0.497 0.365 5.1e-27
TAIR|locus:2102767 818 TOC75-III "translocon at the o 0.548 0.392 0.201 2.3e-06
UNIPROTKB|Q74AT3 765 yaeT "Outer membrane protein a 0.259 0.198 0.230 1.8e-05
TIGR_CMR|GSU_2268 765 GSU_2268 "outer membrane prote 0.259 0.198 0.230 1.8e-05
TAIR|locus:2183164 OEP80 "outer envelope protein of 80 kDa" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2016 (714.7 bits), Expect = 1.7e-208, P = 1.7e-208
 Identities = 407/570 (71%), Positives = 456/570 (80%)

Query:    33 LTKSKNSLSHLIYSL-NEST---RSTE-PF--TRKLQSFAEHLYGKSVRICSTCLSMTGA 85
             L+ ++NSL+ ++ SL N  T   RS   P   T+ L S  + + GKS  I  + +  T  
Sbjct:    43 LSNTRNSLNQMLQSLKNRHTPPPRSVRRPNLPTQMLNSVTQLMIGKSSPISLSLIQSTQF 102

Query:    86 ---------VDTL--VNFPLLCSASLSLNQSSAEFPAQSELSTQLQQKAQQPHSVSRSDE 134
                      V+T+  ++ PLLC ASLSL + +    +     T  QQK    HSVSR+ E
Sbjct:   103 NWSESRDENVETIRGLSSPLLCCASLSLTRPNESTQSVEGKDTVQQQKG---HSVSRNAE 159

Query:   135 ERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCS 194
             ERVLISEVLVR KDGEELERKDLE EAL ALKACRANSALT+REVQEDVHRII+SGYFCS
Sbjct:   160 ERVLISEVLVRTKDGEELERKDLEMEALAALKACRANSALTIREVQEDVHRIIESGYFCS 219

Query:   195 CMPVAVDTRDGIRLVFQVEPNQEFHGLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEV 254
             C PVAVDTRDGIRL+FQVEPNQEF GLVCE ANVLP+KF+ +AFRDG+GKV+NI+RL+E 
Sbjct:   220 CTPVAVDTRDGIRLMFQVEPNQEFRGLVCENANVLPSKFIHEAFRDGFGKVINIKRLEEA 279

Query:   255 ITSINGWYMERGLFGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPE 314
             ITSINGWYMERGLFG+VS ++ LSGGI+RLQVAEAEVNNISIRFLDRKTGEPTKGKT PE
Sbjct:   280 ITSINGWYMERGLFGIVSDIDTLSGGIVRLQVAEAEVNNISIRFLDRKTGEPTKGKTSPE 339

Query:   315 TILRQLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPXX 374
             TILRQLTTKKGQVYSMLQGKRDV+TVL MGIMEDVSIIPQPAGD+GKVDLIMN VERP  
Sbjct:   340 TILRQLTTKKGQVYSMLQGKRDVDTVLAMGIMEDVSIIPQPAGDSGKVDLIMNCVERPSG 399

Query:   375 XXXXXXXXXXXXXXXXXXXXXXXFAYSHRNVFGRNQKLNISLERGQIDSIFRINYTDPWI 434
                                    FAYSHRN+FGRNQKLN+SLERGQIDSIFRINYTDPWI
Sbjct:   400 GFSAGGGISSGITSGPLSGLIGSFAYSHRNLFGRNQKLNVSLERGQIDSIFRINYTDPWI 459

Query:   435 EGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPIRPKWSGTVGLIF 494
             EGDDKRTSR+IMVQNSRTPG  VHGNQPDNSSLTIGRVTAG+E+SRP RPKW+GT GLIF
Sbjct:   460 EGDDKRTSRSIMVQNSRTPGNLVHGNQPDNSSLTIGRVTAGVEYSRPFRPKWNGTAGLIF 519

Query:   495 QHSGARDEKGNPIIKDFYSSPLTASGKTNDEMLIAKFESVYTGSGDQGSSMFVFNMEQGL 554
             QH+GARDE+GNPIIKDFYSSPLTASGK +DE ++AK ES+YTGSGDQGS+MF FNMEQGL
Sbjct:   520 QHAGARDEQGNPIIKDFYSSPLTASGKPHDETMLAKLESIYTGSGDQGSTMFAFNMEQGL 579

Query:   555 PVWPEWLFFNRVNARARKGVEIGPARLLLS 584
             PV PEWL FNRV  RARKG+ IGPAR L S
Sbjct:   580 PVLPEWLCFNRVTGRARKGIHIGPARFLFS 609
GO:0003674 "molecular_function" evidence=ND
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0019867 "outer membrane" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009658 "chloroplast organization" evidence=IMP
GO:0010207 "photosystem II assembly" evidence=RCA
TAIR|locus:2081423 AT3G44160 "AT3G44160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102767 TOC75-III "translocon at the outer envelope membrane of chloroplasts 75-III" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q74AT3 yaeT "Outer membrane protein assembly factor BamA" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2268 GSU_2268 "outer membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2X208OEP80_ORYSINo assigned EC number0.78310.77090.6781N/Ano
Q6H7M7OEP80_ORYSJNo assigned EC number0.78310.77090.6781yesno
Q9C5J8OEP80_ARATHNo assigned EC number0.71980.98970.7909yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
OEP80
OEP80 (OUTER ENVELOPE PROTEIN OF 80 KDA); AtOEP80 is paralog to the chloroplastic protein translocation channel Toc75 ; Plays an essential role during early stages of plastid development (732 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
TIC110
TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110); Encodes a protein thoug [...] (1016 aa)
   •• • 0.999
TOC34
TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34); GTP binding; Outer membra [...] (313 aa)
      • 0.998
TOC159
TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159); transmembrane receptor; [...] (1503 aa)
      • 0.992
TIC55
TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55); 2 iron, 2 sulfur cluster [...] (539 aa)
    • • 0.986
TOC33
TOC33 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 33); GTP binding / GTPase/ pro [...] (297 aa)
      • 0.966
TIC20
TIC20 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20); Tic20 is believed to func [...] (274 aa)
      • 0.962
TIC40
TIC40; chloroplast protein import (Tic40) (447 aa)
      • 0.927
TOC120
ATTOC120; GTP binding; component of TOC complex, plastid protein import machinery. ; GTPase inv [...] (1089 aa)
      • 0.921
TOC132
TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132); transmembrane recept [...] (1206 aa)
      • 0.921
ATOEP16-1
ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1); P-P-bond-hydrolysis-driven protein transmembra [...] (148 aa)
      • 0.879

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query585
TIGR00992 718 TIGR00992, 3a0901s03IAP75, chloroplast envelope pr 4e-37
COG4775 766 COG4775, COG4775, Outer membrane protein/protectiv 6e-28
pfam01103 317 pfam01103, Bac_surface_Ag, Surface antigen 1e-19
TIGR03303 741 TIGR03303, OM_YaeT, outer membrane protein assembl 3e-19
PLN03138 796 PLN03138, PLN03138, Protein TOC75; Provisional 7e-08
pfam0724478 pfam07244, Surf_Ag_VNR, Surface antigen variable n 2e-04
>gnl|CDD|130065 TIGR00992, 3a0901s03IAP75, chloroplast envelope protein translocase, IAP75 family Back     alignment and domain information 
 Score =  146 bits (369), Expect = 4e-37
 Identities = 105/474 (22%), Positives = 178/474 (37%), Gaps = 58/474 (12%)

Query: 138 LISEVLVRNKDGEELERKDLETEALTALKACRANSALTVR-EVQEDVHRIIDSGYFCSCM 196
           L  E+ V    G   E+ D E +          +  L       E V  I D     +  
Sbjct: 109 LQKELEVLATCGM-FEKVDYEGKT-------TQDGRLGTTISFAESVWAIADRFRCINVG 160

Query: 197 PVAVDTRDGIRLVFQVEPNQEFHGL--------VCEGAN-VLPTKFVEDAFRDGYG-KVV 246
            +       + +  +V+   EF           + E    +LP + V++ F   YG  +V
Sbjct: 161 LMPQSKPLEMDVDMEVKEKPEFTRRLEIRYKRRIAEARPCLLPQEVVDETFGMLYGQGIV 220

Query: 247 NIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGE 305
           + R L E+   +  WY   G     V     L+   +  +V E ++ N+ I+F D K G 
Sbjct: 221 SARLLQEIRDRVQEWYHNEGYACAQVVNFGNLNTDEVVCEVVEGDITNLQIQFFD-KLGN 279

Query: 306 PTKGKTRPETILRQLTT--KKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVD 363
             +G TR   + R+L    K G V+++  GK  ++ + ++G+  ++ + P+P  +  + +
Sbjct: 280 VVEGNTRDPVVTRELPKQLKPGDVFNIEAGKTALQNINSLGLFSNIEVNPRP-DEMNEGE 338

Query: 364 LIMNV----VERPSGGFSAGGGISSGITSGPLS---GLIGSFAYSHRNVFGRNQKLNISL 416
           +I+ +    +E+ S   S    I  G    P        G+  + HRN+ G N+ L  S+
Sbjct: 339 IIVEIKLKELEQKSAEVSTEWSIVPGRGGRPTLASSQPGGTITFEHRNLQGLNRSLGGSV 398

Query: 417 ERG-----QIDSIFRINYTDPWIEGDD--KRTSRTIMVQNSRTPGTHVHGNQPDNS--SL 467
                   Q D +F++ YT P+++G D  +  + T    NSR       G    N   S+
Sbjct: 399 TTSNFLNPQDDLLFKVEYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSI 458

Query: 468 TIGRVTAGMEFSRPIR------PKWSGTVGLIFQHS------GARDEKGNPIIKDFYSSP 515
            + R       +                       S      G R     PI       P
Sbjct: 459 WVDRAGVKANITENFARQSKFTYGLVMEEIFTRDESRHINANGQRSLPSGPI--SADGPP 516

Query: 516 LTASGKTNDEMLIAKF----ESVYTGSGDQGSSMFVFNMEQGLPVWPEWLFFNR 565
            T SG   D M   +     ++    +G    S   F ++QGL V   + FFNR
Sbjct: 517 TTLSGTGVDRMAFLQANITRDNTNFVNGPTVGSRVRFQVDQGLGVGSGFPFFNR 570

Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein [Transport and binding proteins, Amino acids, peptides and amines]. Length = 718
>gnl|CDD|227116 COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|216300 pfam01103, Bac_surface_Ag, Surface antigen Back     alignment and domain information
>gnl|CDD|234165 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein Back     alignment and domain information
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional Back     alignment and domain information
>gnl|CDD|219346 pfam07244, Surf_Ag_VNR, Surface antigen variable number repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 585
PLN03138 796 Protein TOC75; Provisional 100.0
COG4775 766 Outer membrane protein/protective antigen OMA87 [C 100.0
TIGR00992 718 3a0901s03IAP75 chloroplast envelope protein transl 100.0
PRK11067 803 outer membrane protein assembly factor YaeT; Provi 100.0
TIGR03303 741 OM_YaeT outer membrane protein assembly complex, Y 100.0
TIGR03303 741 OM_YaeT outer membrane protein assembly complex, Y 99.94
PRK11067 803 outer membrane protein assembly factor YaeT; Provi 99.94
COG4775 766 Outer membrane protein/protective antigen OMA87 [C 99.9
COG0729 594 Outer membrane protein [Cell envelope biogenesis, 99.9
COG2831 554 FhaC Hemolysin activation/secretion protein [Intra 99.87
PF03865 404 ShlB: Haemolysin secretion/activation protein ShlB 99.14
PF01103 323 Bac_surface_Ag: Surface antigen; InterPro: IPR0001 99.02
KOG2602 457 consensus Predicted cell surface protein homologou 98.99
PLN03138796 Protein TOC75; Provisional 98.97
TIGR00992718 3a0901s03IAP75 chloroplast envelope protein transl 98.77
PF0847976 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013 98.73
PF0724478 Surf_Ag_VNR: Surface antigen variable number repea 98.71
PF0724478 Surf_Ag_VNR: Surface antigen variable number repea 98.7
COG2831554 FhaC Hemolysin activation/secretion protein [Intra 98.56
COG0729594 Outer membrane protein [Cell envelope biogenesis, 97.3
PF0847976 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013 96.85
PF10082381 DUF2320: Uncharacterized protein conserved in bact 86.69
PF0847869 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013 84.23
>PLN03138 Protein TOC75; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.5e-47  Score=422.55  Aligned_cols=441  Identities=19%  Similarity=0.296  Sum_probs=359.8

Q ss_pred             cCccccceEEEEEEEeCCCCccChhhHHHHHHHhhcccCCCCcccHHHHHHHHHHHHHcCCCceEEEEEe--eCCCcEEE
Q 007922          131 RSDEERVLISEVLVRNKDGEELERKDLETEALTALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAV--DTRDGIRL  208 (585)
Q Consensus       131 i~~~~~~~I~~I~f~G~~N~~~~~~~L~~~i~~~~~~~~~g~~~~~~~l~~d~~~L~~~GYf~a~v~~~~--~~~~~v~v  208 (585)
                      ..--++++|++|.|.|.  ..-....+++.+.+.| .+++|..|++.++++|+++|++.|||+ .|.+.+  ..++.+.|
T Consensus       142 ~~~~~~~~vs~v~~~~~--~~~~~~~~e~~l~~~i-~~kpG~v~trsqLq~dv~~I~~tG~F~-~V~~~v~~~~dg~v~V  217 (796)
T PLN03138        142 LSGFKRYKVSEIEFFDR--RRNTTVGTEDSFFEMV-TLRPGGVYTKAQLQKELETLASCGMFE-KVDLEGKTKPDGTLGL  217 (796)
T ss_pred             cCCcceEEEEEEEEecc--ccCCCcchHHHHHHHH-hcCCCCccCHHHHHHHHHHHHhcCCce-EEEEEEEeCCCCeEEE
Confidence            34457899999999882  1111222333343455 589999999999999999999999999 776543  34567999


Q ss_pred             EEEEeeCCc--eEEEE------------EEcCCCCChhHHHhhhccCC----------------------------C-ce
Q 007922          209 VFQVEPNQE--FHGLV------------CEGANVLPTKFVEDAFRDGY----------------------------G-KV  245 (585)
Q Consensus       209 ~~~V~eG~~--~~~I~------------i~G~~~~~~~~L~~~~~lk~----------------------------G-~~  245 (585)
                      +|.|+||+.  ++.|.            |+||..+++.+|++.+..++                            + ..
T Consensus       218 ~~~i~Eg~~~~I~~I~~i~~~~~~~~~~~~GN~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~gk  297 (796)
T PLN03138        218 TISFTESTWQSADSFRCINVGLMSQSKPIEMDEDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRDQGK  297 (796)
T ss_pred             EEEEEeCCceeeeeeeecccccccccceeeCCcccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhccCCc
Confidence            999999996  44888            99998888888776665433                            1 24


Q ss_pred             ecHHHHHHHHHHHHHHHHHCCc-eEEEeeEEEeeCcEEEEEEEEeEEeeEEEEEccccCCCCCCCCCCHHHHHhhcC--c
Q 007922          246 VNIRRLDEVITSINGWYMERGL-FGMVSGVEILSGGIIRLQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILRQLT--T  322 (585)
Q Consensus       246 f~~~~l~~~~~~I~~~y~~~GY-~A~V~~~~~~~dg~V~l~V~eg~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r~l~--l  322 (585)
                      |+.++|++++++|+++|.++|| +++|.+.....++.|+++|.|+.+..|+|++.++ .|+++..++++.+|+|+++  +
T Consensus       298 lN~e~Lq~die~I~~~Y~d~GYafa~V~~~~~id~g~Vtl~V~EG~i~~I~V~~~dr-ig~~i~GNTrD~VIRREL~~~l  376 (796)
T PLN03138        298 VSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTNEVVCEVVEGDITKVVIQFQDK-LGNVVEGNTQLPIIDRELPKQL  376 (796)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCceEEEecccccCCceEEEEEecccEEEEEEEeccc-ccccccCCccCeEEeeeccccc
Confidence            9999999999999999999999 8999988777778999999999999999986543 2333334579999999997  5


Q ss_pred             CCCCccchHhHHHHHHHHHhCCCccccccccccC-CCCCeEEEEEEEEE--cCCceEEEEEeeeCCCCCC---CccccEE
Q 007922          323 KKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPA-GDTGKVDLIMNVVE--RPSGGFSAGGGISSGITSG---PLSGLIG  396 (585)
Q Consensus       323 ~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~-~~~g~vdl~i~v~E--~~~~~l~~g~g~st~~~~~---~~~G~~~  396 (585)
                      +||++||..++++++++|+++|||++|++.+.|. ..++.++|+|.|+|  ++.+.++++.+|+.+....   ...|+.+
T Consensus       377 keGd~fN~~~l~~slqRL~~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~G  456 (796)
T PLN03138        377 RQGHIFNIEAGKQALRNINSLALFSNIEVNPRPDEKNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPGG  456 (796)
T ss_pred             CCCcccCHHHHHHHHHHHHhCCCCceeEEEeccCCCCCCeEEEEEEEEEccCCceeEecccccccccCCCCcccccccee
Confidence            9999999999999999999999999999999885 46899999999999  4555666665554321000   2356789


Q ss_pred             EEEEEecCCCCCCceEEEEEEE-----cceeeEEEEEEecccccC--CCCceEEEEEEEEeecCCcccCCCC--CCCCCe
Q 007922          397 SFAYSHRNVFGRNQKLNISLER-----GQIDSIFRINYTDPWIEG--DDKRTSRTIMVQNSRTPGTHVHGNQ--PDNSSL  467 (585)
Q Consensus       397 ~~~~~~rNlfG~G~~l~l~~~~-----g~~~~~~~~sy~~P~~~~--~~~~~sl~~s~~~~~~~~~~~~~~~--~~~~~y  467 (585)
                      .++|+|+||+|+|+++.++++.     ++....+.++|++||+.+  ++.++++++++++++....+|.+..  +.....
T Consensus       457 tvs~~~~NL~G~g~~L~~~v~~s~~~~g~~d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~~~  536 (796)
T PLN03138        457 TVSFEHRNIQGLNRSILGSVTSSNLLNPQDDLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPPI  536 (796)
T ss_pred             EEEEeccccccccceEEEEEEeecccCCccceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCCcc
Confidence            9999999999999999999998     456789999999999987  5666899999999887654544322  223345


Q ss_pred             eEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEeecCCCCcee----------eeccCCceeeeecCCCceeeeeEeeEEcC
Q 007922          468 TIGRVTAGMEFSRPIRPKWSGTVGLIFQHSGARDEKGNPII----------KDFYSSPLTASGKTNDEMLIAKFESVYTG  537 (585)
Q Consensus       468 ~~~~~~~~~~l~~pl~~~~~~slgl~~~~~~i~d~~g~~~~----------~~~~~~~l~ls~d~~D~~l~Pt~~~~y~~  537 (585)
                      ...+.++++.+++|+++.+.+++++.|++...+|..+....          .+.++.++++|....|++++.+++.+++.
T Consensus       537 ~~~R~G~~~~~~rp~~~~~~~s~g~~~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd~  616 (796)
T PLN03138        537 WVDRAGFKANITENFTRQSKFTYGLVVEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRDN  616 (796)
T ss_pred             eEeecccceEeecccCCCCceEEEEEEEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEecc
Confidence            68999999999999998888899999999999998876542          23567899999999999999999999987


Q ss_pred             CC----CcceeEEEEEEEEEeecCCCceEEEEEEEeEeeeeee
Q 007922          538 SG----DQGSSMFVFNMEQGLPVWPEWLFFNRVNARARKGVEI  576 (585)
Q Consensus       538 ~~----d~~~~~~~~~~~~~~~l~~~~~~f~R~~~~~~~~~~l  576 (585)
                      ++    .+.+.++.++++|++|++.+|++|+|+++.|++|+++
T Consensus       617 ~~~~~~pt~G~~~~~~~EQ~lpvg~~~~~fNR~~~~~s~fipv  659 (796)
T PLN03138        617 TKFVNGAVVGDRHIFQVDQGLGIGSKFPFFNRHQLTVTKFIQL  659 (796)
T ss_pred             CCCCCCCCccceEEEEeeeeccccCCCCceEEEEEEEEEEEee
Confidence            76    3689999999999999999999999999999999998

>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family Back     alignment and domain information
>PRK11067 outer membrane protein assembly factor YaeT; Provisional Back     alignment and domain information
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein Back     alignment and domain information
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein Back     alignment and domain information
>PRK11067 outer membrane protein assembly factor YaeT; Provisional Back     alignment and domain information
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate Back     alignment and domain information
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein [] Back     alignment and domain information
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only] Back     alignment and domain information
>PLN03138 Protein TOC75; Provisional Back     alignment and domain information
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family Back     alignment and domain information
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO) Back     alignment and domain information
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus Back     alignment and domain information
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus Back     alignment and domain information
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion] Back     alignment and domain information
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO) Back     alignment and domain information
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function Back     alignment and domain information
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query585
3mc8_A316 Potra1-3 Of The Periplasmic Domain Of Omp85 From An 1e-29
2x8x_X235 Structure Of The N-Terminal Domain Of Omp85 From Th 1e-26
>pdb|3MC8|A Chain A, Potra1-3 Of The Periplasmic Domain Of Omp85 From Anabaena Length = 316 Back     alignment and structure 
Iteration: 1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 151/276 (54%), Gaps = 17/276 (6%)
Query: 110 PAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALTALKACR 169
           PA +  +T   +    P++   + E RVL+SEVLVR + G+     +LET+    ++  +
Sbjct: 35  PAPAPGTTPGTENFNTPNATPETTEPRVLVSEVLVRPQSGQLT--PELETQVYNVIR-TQ 91
Query: 170 ANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVCE---GA 226
                T  ++QED++ I  +G+F +      DT  G+R+ F V+PN     +  +   G 
Sbjct: 92  PGRTTTRSQLQEDINAIFGTGFFSNVQASPEDTPLGVRVSFIVQPNPVLSKVEIQANPGT 151
Query: 227 NV---LPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERG--LFGMVSGVEILSGGI 281
           NV   LP    ++ FR  YGK++N+R L E I  +   Y ++G  L  +V   ++   G+
Sbjct: 152 NVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSENGV 211
Query: 282 IRLQVAEAEVNNISIRFLDRK------TGEPTKGKTRPETILRQLTTKKGQVYSMLQGKR 335
           + LQVAE  V NIS+RF +++       G+P +G+T+   I R++  K GQV++    ++
Sbjct: 212 VTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFNRNTVQK 271
Query: 336 DVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVER 371
           D++ V   G+ EDV++   P  D  KV++++NVVER
Sbjct: 272 DLQRVFGTGLFEDVNVSLDPGTDPTKVNVVVNVVER 307
>pdb|2X8X|X Chain X, Structure Of The N-Terminal Domain Of Omp85 From The Thermophilic Cyanobacterium Thermosynechococcus Elongatus Length = 235 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query585
3mc9_A316 ALR2269 protein; polypeptide transport associated, 5e-46
2x8x_X235 TLR1789 protein, OMP85; chaperone, TOC75, protein 7e-45
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
2qdz_A 554 TPSB transporter FHAC; beta barrel, potra domain, 3e-12
3q6b_A189 Outer membrane protein assembly complex, YAET Pro; 6e-06
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Length = 316 Back     alignment and structure
 Score =  163 bits (414), Expect = 5e-46
 Identities = 87/285 (30%), Positives = 151/285 (52%), Gaps = 17/285 (5%)

Query: 104 QSSAEFPAQSELSTQLQQKAQQPHSVSRSDEERVLISEVLVRNKDGEELERKDLETEALT 163
            +    PA +  +T   +    P++   + E RVL+SEVLVR + G+     +LET+   
Sbjct: 29  TTEQPAPAPAPGTTPGTENFNTPNATPETTEPRVLVSEVLVRPQSGQL--TPELETQVYN 86

Query: 164 ALKACRANSALTVREVQEDVHRIIDSGYFCSCMPVAVDTRDGIRLVFQVEPNQEFHGLVC 223
            ++  +     T  ++QED++ I  +G+F +      DT  G+R+ F V+PN     +  
Sbjct: 87  VIR-TQPGRTTTRSQLQEDINAIFGTGFFSNVQASPEDTPLGVRVSFIVQPNPVLSKVEI 145

Query: 224 EG------ANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERG--LFGMVSGVE 275
           +        +VLP    ++ FR  YGK++N+R L E I  +   Y ++G  L  +V   +
Sbjct: 146 QANPGTNVPSVLPQATADEIFRAQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQ 205

Query: 276 ILSGGIIRLQVAEAEVNNISIRFLDRK------TGEPTKGKTRPETILRQLTTKKGQVYS 329
           +   G++ LQVAE  V NIS+RF +++       G+P +G+T+   I R++  K GQV++
Sbjct: 206 VSENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYIITREVELKPGQVFN 265

Query: 330 MLQGKRDVETVLTMGIMEDVSIIPQPAGDTGKVDLIMNVVERPSG 374
               ++D++ V   G+ EDV++   P  D  KV++++NVVER   
Sbjct: 266 RNTVQKDLQRVFGTGLFEDVNVSLDPGTDPTKVNVVVNVVERSLE 310
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Length = 235 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Length = 554 Back     alignment and structure
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A Length = 189 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query585
2qdz_A 554 TPSB transporter FHAC; beta barrel, potra domain, 99.97
3mc9_A316 ALR2269 protein; polypeptide transport associated, 99.97
2x8x_X235 TLR1789 protein, OMP85; chaperone, TOC75, protein 99.96
2qdf_A335 OMP85, outer membrane protein assembly factor YAET 99.94
3efc_A395 OMP85, outer membrane protein assembly factor YAET 99.93
3efc_A395 OMP85, outer membrane protein assembly factor YAET 99.93
2qdf_A335 OMP85, outer membrane protein assembly factor YAET 99.85
3q6b_A189 Outer membrane protein assembly complex, YAET Pro; 99.84
3q6b_A189 Outer membrane protein assembly complex, YAET Pro; 99.5
2qdz_A554 TPSB transporter FHAC; beta barrel, potra domain, 99.32
2x8x_X235 TLR1789 protein, OMP85; chaperone, TOC75, protein 99.23
3mc9_A316 ALR2269 protein; polypeptide transport associated, 99.1
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Back     alignment and structure
Probab=99.97  E-value=5.9e-28  Score=268.68  Aligned_cols=340  Identities=11%  Similarity=0.052  Sum_probs=256.7

Q ss_pred             EEee---CCceE--EEEEEcCCCCChhHHHhhhccCCCceecHHHHHHHHHHHHHHHHHCCc-eEEEeeE-EEeeCcEEE
Q 007922          211 QVEP---NQEFH--GLVCEGANVLPTKFVEDAFRDGYGKVVNIRRLDEVITSINGWYMERGL-FGMVSGV-EILSGGIIR  283 (585)
Q Consensus       211 ~V~e---G~~~~--~I~i~G~~~~~~~~L~~~~~lk~G~~f~~~~l~~~~~~I~~~y~~~GY-~A~V~~~-~~~~dg~V~  283 (585)
                      ..+|   |++|+  +|.|+|+..+++++|++++..++|++|+.+.|.+++++|+++|+++|| +++|..+ +...++.|+
T Consensus        49 ~~~e~~~g~~~~i~~I~~~G~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g~l~  128 (554)
T 2qdz_A           49 RKPDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLK  128 (554)
T ss_dssp             ----CBCCCSSSSCCEEEECCSSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETTEEE
T ss_pred             CCccccCCceEEEEEEEEECCccCCHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccccCCEEE
Confidence            3468   99866  999999999898999999999999999999999999999999999999 8887654 445678999


Q ss_pred             EEEEEeEEeeEEEEEccccCCCCCCCCCCHHHHHh---hcCcCCCCccchHhHHHHHHHHHhCCCccccccccccCCCCC
Q 007922          284 LQVAEAEVNNISIRFLDRKTGEPTKGKTRPETILR---QLTTKKGQVYSMLQGKRDVETVLTMGIMEDVSIIPQPAGDTG  360 (585)
Q Consensus       284 l~V~eg~Ig~I~I~~~d~~~Gn~~~~~t~~~~I~r---~l~l~~G~~ys~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~g  360 (585)
                      |.|+||+|++|.|.      |+   .++++.+|++   .+++++|++|+.++|++++++|++++  ..|.+.+.|...++
T Consensus       129 i~v~eG~i~~I~i~------G~---~~~~~~~l~~~~~~~~~~~G~~~n~~~le~~~~~L~~~~--~~v~~~~~p~~~~g  197 (554)
T 2qdz_A          129 LKVEWGRIKGWLID------GK---PLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGG--KTGNITIVPADEYG  197 (554)
T ss_dssp             EEEECCEEEEEEET------TE---ECCSHHHHHHHHHHSTTCTTCBCCHHHHHHHHHHHCSSS--EEEEEEEEECSSTT
T ss_pred             EEEEeEEEEEEEEC------CC---CccchhhhhhhhhhccccCCCcCCHHHHHHHHHHHhcCc--hhceEEEecCCCCC
Confidence            99999999999998      98   7889999999   99999999999999999999999999  67888888876789


Q ss_pred             eEEEEEEEEEcCCceEEEEEeeeC--CCCCCCccccEEEEEEEecCCCCCCceEEEEEEEcc-------eeeEEEEEEec
Q 007922          361 KVDLIMNVVERPSGGFSAGGGISS--GITSGPLSGLIGSFAYSHRNVFGRNQKLNISLERGQ-------IDSIFRINYTD  431 (585)
Q Consensus       361 ~vdl~i~v~E~~~~~l~~g~g~st--~~~~~~~~G~~~~~~~~~rNlfG~G~~l~l~~~~g~-------~~~~~~~sy~~  431 (585)
                      .++|+|.|+|+++..+.+|++...  .-   ...++++.+.++++|+||.|++|++++..+.       ..+.+.++|+.
T Consensus       198 ~~~l~v~v~e~~~~~~~~g~~~~g~g~~---~tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~  274 (554)
T 2qdz_A          198 YSYLDLQLQRRALPRVSLGMDNSGPGTP---ENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSV  274 (554)
T ss_dssp             EEEEEEEEEECCSCEEEEEEEECSCSSS---CSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEE
T ss_pred             eeEEEEEEeeCCcEEEEEEEcCCCCCCC---CccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEE
Confidence            999999999988766666655422  10   0134889999999999999999999999985       67899999999


Q ss_pred             ccccCCCCceEEEEEEEEeecCCcccCCCCCCCCCeeEEEEEEEEEEEEEc--CCCeEEEEEEEEEEEEeecCC-CC---
Q 007922          432 PWIEGDDKRTSRTIMVQNSRTPGTHVHGNQPDNSSLTIGRVTAGMEFSRPI--RPKWSGTVGLIFQHSGARDEK-GN---  505 (585)
Q Consensus       432 P~~~~~~~~~sl~~s~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~pl--~~~~~~slgl~~~~~~i~d~~-g~---  505 (585)
                      |+..     +.+.+++.+.+....+ . .......|..++.++++++++|+  ...+++++++.+.+.+..+.. +.   
T Consensus       275 P~~~-----~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (554)
T 2qdz_A          275 PLGR-----TRLDLQTGYSTYRNLL-K-TRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLD  347 (554)
T ss_dssp             EETT-----EEEEEEEEEEEEECCC-S-SSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTSCC
T ss_pred             EEec-----CeEEEEEEEeEEEEEc-c-CCcceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcCcc
Confidence            9863     3455555555432211 0 11123467888889999999999  456666777776665554311 11   


Q ss_pred             ceeeeccCCceeeeecCCCc--eeeeeEeeEEcC-------------CCCcceeEEEEEEEEEeec---CCCceEEEEEE
Q 007922          506 PIIKDFYSSPLTASGKTNDE--MLIAKFESVYTG-------------SGDQGSSMFVFNMEQGLPV---WPEWLFFNRVN  567 (585)
Q Consensus       506 ~~~~~~~~~~l~ls~d~~D~--~l~Pt~~~~y~~-------------~~d~~~~~~~~~~~~~~~l---~~~~~~f~R~~  567 (585)
                      ..........++++|+++|.  .++|++++....             .++..+.++.+++.++.++   ...+.+.+|+.
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~~  427 (554)
T 2qdz_A          348 VSSKHYSDVTVGMQYSTQRGANAYFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLG  427 (554)
T ss_dssp             CEEEEEEEEEEEEEEEEECSSEEEEEEEEEEECCCC--------------CCCEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccCceEEEEEEEEEEEEEecCeEEEEEEEEEecCCCCCCcCcccccCCCcceEEEEEEEEEEEEEccccCCCEEEEEEEE
Confidence            12234445667777888776  667765444321             1245678888888888885   44566666666


Q ss_pred             EeEe
Q 007922          568 ARAR  571 (585)
Q Consensus       568 ~~~~  571 (585)
                      ++++
T Consensus       428 ~q~~  431 (554)
T 2qdz_A          428 FQYS  431 (554)
T ss_dssp             EEEC
T ss_pred             eEec
Confidence            5554
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Back     alignment and structure
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Back     alignment and structure
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A Back     alignment and structure
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli} Back     alignment and structure
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli} Back     alignment and structure
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A Back     alignment and structure
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A Back     alignment and structure
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A Back     alignment and structure
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A Back     alignment and structure
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus} Back     alignment and structure
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00