Citrus Sinensis ID: 007970
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 583 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SF38 | 778 | Pentatricopeptide repeat- | yes | no | 0.979 | 0.733 | 0.725 | 0.0 | |
| Q9SA60 | 793 | Pentatricopeptide repeat- | no | no | 0.921 | 0.677 | 0.255 | 2e-45 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.739 | 0.669 | 0.278 | 1e-41 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.732 | 0.566 | 0.270 | 4e-40 | |
| P0C7R4 | 658 | Pentatricopeptide repeat- | no | no | 0.756 | 0.670 | 0.257 | 2e-39 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.746 | 0.708 | 0.243 | 3e-38 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.747 | 0.692 | 0.253 | 5e-37 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.794 | 0.635 | 0.273 | 2e-36 | |
| Q9FLL3 | 527 | Pentatricopeptide repeat- | no | no | 0.651 | 0.721 | 0.267 | 2e-36 | |
| Q9CAM8 | 629 | Pentatricopeptide repeat- | no | no | 0.732 | 0.678 | 0.236 | 3e-36 |
| >sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/597 (72%), Positives = 497/597 (83%), Gaps = 26/597 (4%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+RSGYLPHVKAW+ V+ L+ASGDDGP ES+KLF + +RV++F D +V S+PDTAA
Sbjct: 179 MIRSGYLPHVKAWTAAVASLSASGDDGPEESIKLFIAITRRVKRFGDQSLVGQSRPDTAA 238
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+NAVLNACANLG K+ +LF++M E+ +PDVLTYNVMIKLCAR RK L+VFVLERI+
Sbjct: 239 FNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERII 298
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL---------- 170
+ GI +CMTT SLVAAYVGFGDL AE IVQAMRE RRD+CK++RE +
Sbjct: 299 DKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKRRDLCKVLRECNAEDLKEKEEEE 358
Query: 171 -------------EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
YS+ +E ++ +VF+KLLPNS++PS EPPLLPK FAP+SRIYT
Sbjct: 359 AEDDEDAFEDDEDSGYSARDEVSEEGVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYT 418
Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
TLMKGYM GRV+DT RML AMRRQ+D SHPD VTYTTVVSA V AG MDRARQVLAEM
Sbjct: 419 TLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEM 478
Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
R+GVPANRITYN+LLKGYC+QLQID+A++LLREM +DA IEPDVVSYNI+IDG ILIDD
Sbjct: 479 ARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDD 538
Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
SAGAL FFNEMR RGIAPTKISYTTLMKAFA+S QPKLAN+VFDEM+ DPRVKVD++AWN
Sbjct: 539 SAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWN 598
Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
MLVEGYCR+GL+E+A+R++ RMKENGFYPNVATYGSLANG+S ARKPG+ALLLWKEIKER
Sbjct: 599 MLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKER 658
Query: 458 CEVKKEGVNADSD---LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
C VKK+ +DS PP LKPDE LLD LADICVRAAFF+KALEI+ACMEE+GIPPNK
Sbjct: 659 CAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNK 718
Query: 515 TKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP 571
TKYKKIYVEMHSRMFTSKHASQAR DRR ERKRAAEAFKFWLGLPNSYYGSEW+L P
Sbjct: 719 TKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGP 775
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Involved in the processing of polycistronic chloroplast psbB-psbT-psbH-petB-petD transcript. Could bind RNA. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SA60|PPR6_ARATH Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana GN=At1g03100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 155/606 (25%), Positives = 266/606 (43%), Gaps = 69/606 (11%)
Query: 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDS-----KPDTAAYN 62
PHV AWS V++ ++ +G + + + ++ DP S++ KP+T N
Sbjct: 203 PHVSAWSAVLAHMSLAGSGSYLSAELVLEIGYLFHNNRVDPRKKSNAPLLAMKPNTQVLN 262
Query: 63 AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
L C G +K QL D + + G K D +M + R R+ L L+R ++
Sbjct: 263 VALAGCLLFGTTRKAEQLLDMIPKIGVKADANLLVIMAHIYERNGRREELR-KLQRHIDE 321
Query: 123 GITLCMTTF----QSLVAAYVGFGDLEIAETIV-QAMREG---RRDVCKIIRELDLED-- 172
L + F L+ ++ FGDLE A +V + +R G R + I E D D
Sbjct: 322 ACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEMLRRGKVARNSLGAAILEFDTADDG 381
Query: 173 --YSSENEGDDDD----DDEVFEKLLPNSINPSSE------------------PPLLPK- 207
Y+ G + D+ + +S+ P E LL K
Sbjct: 382 RLYTKRVSGKGSEVKEHDNPETRVVSIHSMIPYDEFSRDRKFLKLEAEAKDVLGALLAKL 441
Query: 208 ------------TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT 255
P IY L K ++ G++ + + L ED+ D+
Sbjct: 442 HVQVELITSERGVLQPTEEIYVKLAKAFLESGKMKELAKFL-LKAEHEDSPVSSDNSMLI 500
Query: 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315
V++A + G +D+A +L EM GV Y+ LLK YC Q + LLR+ A
Sbjct: 501 NVINACISLGMLDQAHDLLDEMRMAGVRTGSSVYSSLLKAYCNTNQTREVTSLLRD-AQK 559
Query: 316 AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR-ARGIAPTKISYTTLMKAFALSSQPK 374
A I+ D Y LI ++ +D+ GAL F EM+ A+ + + L+K +++
Sbjct: 560 AGIQLDSSCYEALIQSQVIQNDTHGALNVFKEMKEAKILRGGNQKFEKLLKGCEGNAEAG 619
Query: 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
L +K+ E+ + + WN ++ + + GL+++A++ ++RM+ G PN T+ S+
Sbjct: 620 LMSKLLREIREVQSLDAGVHDWNNVIHFFSKKGLMQDAEKALKRMRSLGHSPNAQTFHSM 679
Query: 435 ANGIS-LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493
G + + K E LW E+K + + +K D+ELLDA+ VR
Sbjct: 680 VTGYAAIGSKYTEVTELWGEMK-----------SIAAATSSMKFDQELLDAVLYTFVRGG 728
Query: 494 FFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFK 553
FF +A E+V ME+ + +K KY+ ++++ H + K A + + + + +++ A FK
Sbjct: 729 FFSRANEVVEMMEKKNMFVDKYKYRMLFLKYHKTAYKGK-APKVQSESQLKKREAGLVFK 787
Query: 554 FWLGLP 559
WLGL
Sbjct: 788 KWLGLS 793
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/474 (27%), Positives = 238/474 (50%), Gaps = 43/474 (9%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LCARASRKHLLV 113
+PDT +N +LN + + L+L D+M E G KP ++T N ++ LC +V
Sbjct: 155 EPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVV 214
Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
+ +R++E G T+ ++ G +A +++ M E R++ +LD Y
Sbjct: 215 LI-DRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE--RNI-----KLDAVKY 266
Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
S +G D L N+ N +E + K F + Y TL+ G+ N GR D
Sbjct: 267 SIIIDGLCKDGS------LDNAFNLFNEMEI--KGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
++L M +++ P+ VT++ ++ + VK G + A Q+L EM + G+ N ITYN L+
Sbjct: 319 KLLRDMIKRK---ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLI 375
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
G+C++ ++++A +++ M +PD++++NILI+G+ + L F EM RG+
Sbjct: 376 DGFCKENRLEEAIQMVDLMISKG-CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGV 434
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
++Y TL++ F S + ++A K+F EM+ RV+ DIV++ +L++G C G +E+A
Sbjct: 435 IANTVTYNTLVQGFCQSGKLEVAKKLFQEMV-SRRVRPDIVSYKILLDGLCDNGELEKAL 493
Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473
I +++++ ++ Y + +G+ A K +A L+ C + +GV D+
Sbjct: 494 EIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF------CSLPLKGVKLDARAYN 547
Query: 474 PLKPDEELLDAL--ADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
+ + D+L ADI FRK M E G P++ Y I + H
Sbjct: 548 IMISELCRKDSLSKADI-----LFRK-------MTEEGHAPDELTY-NILIRAH 588
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 127/470 (27%), Positives = 216/470 (45%), Gaps = 43/470 (9%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQL-FDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
KPDT YN +LN + G K +++ +M +G KPDV T+NV+IK RA + +
Sbjct: 151 KPDTHFYNRMLNLLVD-GNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAI 209
Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
+LE + G+ TF +++ Y+ GDL+ A I + M E + + + +
Sbjct: 210 LMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF 269
Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
E +D + F + + N F P+ + TL+ G G V +
Sbjct: 270 CKEGRVEDALN---FIQEMSNQ-----------DGFFPDQYTFNTLVNGLCKAGHVKHAI 315
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
++ M ++ PD TY +V+S L K G + A +VL +M N +TYN L+
Sbjct: 316 EIMDVMLQE---GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLI 372
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
C++ Q+++A EL R + I PDV ++N LI G L + A+ F EMR++G
Sbjct: 373 STLCKENQVEEATELARVLTSKG-ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV---DIVAWNMLVEGYCRMGLVE 410
P + +Y L+ +L S+ KL + ML+ + ++ +N L++G+C+
Sbjct: 432 EPDEFTYNMLID--SLCSKGKLDEAL--NMLKQMELSGCARSVITYNTLIDGFCKANKTR 487
Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
EA+ I + M+ +G N TY +L +G+ +R+ +A L D
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLM----------------DQM 531
Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
+ KPD+ ++L R +KA +IV M +G P+ Y +
Sbjct: 532 IMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTL 581
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May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7R4|PP110_ARATH Pentatricopeptide repeat-containing protein At1g69290 OS=Arabidopsis thaliana GN=At1g69290 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 131/508 (25%), Positives = 223/508 (43%), Gaps = 67/508 (13%)
Query: 55 KPDTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
KPD A NA L AC + + + M G KPD L++ + L AR + +
Sbjct: 212 KPDLVASNAALEACCRQMESLADAENVIESMAVLGVKPDELSFGFLAYLYARKGLREK-I 270
Query: 114 FVLERILE-MGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMREGRRDVCKIIRELDLE 171
LE +++ G + ++++ YV GDL+ +++ I+ +++EG +
Sbjct: 271 SELENLMDGFGFASRRILYSNMISGYVKSGDLDSVSDVILHSLKEGGEE----------S 320
Query: 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSD 231
+S E Y L+KG++ V
Sbjct: 321 SFSVET--------------------------------------YCELVKGFIESKSVKS 342
Query: 232 TVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI-TYN 290
+++ ++ E + D +++A V G D+A +L EM G + I Y
Sbjct: 343 LAKVILEAQKLESSYVGVDSSVGFGIINACVNLGFSDKAHSILEEMIAQGGGSVGIGVYV 402
Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
+LK YC++ + +A +L+ E++ ++ DV N LI+ + D A T F +MR
Sbjct: 403 PILKAYCKEYRTAEATQLVTEISSSG-LQLDVEISNALIEASMTNQDFISAFTLFRDMRE 461
Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
+ K SY T+M + +P+L DE++ DPRV+V+ WN ++ +C+ G +E
Sbjct: 462 NRVVDLKGSYLTIMTGLLENQRPELMAAFLDEVVEDPRVEVNSHDWNSIIHAFCKSGRLE 521
Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
+A+R RM + PN TY SL NG K LLLW EIK G + +
Sbjct: 522 DARRTFRRMVFLRYEPNNQTYLSLINGYVSGEKYFNVLLLWNEIK--------GKISSVE 573
Query: 471 LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530
+ D L+DA V+ FF A+++V +E I +K +YK+ ++E H ++
Sbjct: 574 AEKRSRLDHALVDAFLYALVKGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMETHKKLRL 633
Query: 531 SKHASQARQDRRRERKRAAEAFKFWLGL 558
K + R ++ + AFK W GL
Sbjct: 634 PK-----LRKRNYKKMESLVAFKNWAGL 656
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 115/472 (24%), Positives = 222/472 (47%), Gaps = 37/472 (7%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P N++LN + + + + L DQM E G +PD +T+ ++ + ++ V +
Sbjct: 133 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 192
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS 175
+ER++ G + T+ +++ G+ ++A ++ M +G+ + +I ++
Sbjct: 193 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCK 252
Query: 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
DD ++N +E + K P+ Y++L+ N GR SD R+
Sbjct: 253 YRHVDD-------------ALNLFTE--MDNKGIRPDVFTYSSLISCLCNYGRWSDASRL 297
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
L M ++ N P+ VT+ +++ A K G + A ++ EM + + N +TYN L+ G
Sbjct: 298 LSDMLERKIN---PNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLING 354
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
+C ++D+A+++ M + PDVV+YN LI+GF + F +M RG+
Sbjct: 355 FCMHDRLDEAQQIFTLMVSKDCL-PDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVG 413
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
++YTTL+ F +S A VF +M+ D V +I+ +N L++G C+ G +E+A +
Sbjct: 414 NTVTYTTLIHGFFQASDCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMVV 472
Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
E ++++ P++ TY ++ G+ A K + L+ C + +GV
Sbjct: 473 FEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLF------CSLSLKGV---------- 516
Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
KPD + + + +A + M+E G P+ Y + + H R
Sbjct: 517 KPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTL-IRAHLR 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 120/473 (25%), Positives = 219/473 (46%), Gaps = 37/473 (7%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+PD N++LN + + + L QM E G +PD T+N +I R +R V
Sbjct: 148 EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVA 207
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++R++ G + T+ +V GD+++A ++++ M +G+ + +I ++
Sbjct: 208 LVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALC 267
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
+ +D ++N +E + K PN Y +L++ N GR SD R
Sbjct: 268 NYKNVND-------------ALNLFTE--MDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 312
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L M ++ N P+ VT++ ++ A VK G + A ++ EM + + + TY+ L+
Sbjct: 313 LLSDMIERKIN---PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 369
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+C ++D+AK + E+ P+VV+YN LI GF + F EM RG+
Sbjct: 370 GFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLV 428
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
++YTTL+ F + + A VF +M+ D V DI+ +++L++G C G VE A
Sbjct: 429 GNTVTYTTLIHGFFQARECDNAQIVFKQMVSDG-VLPDIMTYSILLDGLCNNGKVETALV 487
Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
+ E ++ + P++ TY + G+ A K + L+ C + +GV
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF------CSLSLKGV--------- 532
Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
KP+ + R +A + M+E G P+ Y + + H R
Sbjct: 533 -KPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTL-IRAHLR 583
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 142/520 (27%), Positives = 238/520 (45%), Gaps = 57/520 (10%)
Query: 3 RSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYN 62
RSG +V + +V+ L DG +E V F V+ K PDIV+ YN
Sbjct: 228 RSGVGINVYTLNIMVNALC---KDGKMEKVGTFLSQVQE--KGVYPDIVT--------YN 274
Query: 63 AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122
+++A ++ G ++ +L + M G P V TYN +I + + V +L
Sbjct: 275 TLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS 334
Query: 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS-----EN 177
G++ TT++SL+ GD+ E + MR RDV DL +SS
Sbjct: 335 GLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRS--RDVVP-----DLVCFSSMMSLFTR 387
Query: 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237
G+ D F N E L+P ++ IYT L++GY +G +S + +
Sbjct: 388 SGNLDKALMYF--------NSVKEAGLIP-----DNVIYTILIQGYCRKGMISVAMNLRN 434
Query: 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297
M +Q D VTY T++ L K + A ++ EMT + + T IL+ G+C
Sbjct: 435 EMLQQ---GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHC 491
Query: 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357
+ + A EL ++M + +I DVV+YN L+DGF + D A + +M ++ I PT
Sbjct: 492 KLGNLQNAMELFQKMKEK-RIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTP 550
Query: 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417
ISY+ L+ A A +V+DEM+ +K ++ N +++GYCR G + + +E
Sbjct: 551 ISYSILVNALCSKGHLAEAFRVWDEMI-SKNIKPTVMICNSMIKGYCRSGNASDGESFLE 609
Query: 418 RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477
+M GF P+ +Y +L G +A L K+++E ++G L P
Sbjct: 610 KMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEE-----EQG---------GLVP 655
Query: 478 DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517
D +++ R ++A ++ M E G+ P+++ Y
Sbjct: 656 DVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTY 695
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/407 (26%), Positives = 197/407 (48%), Gaps = 27/407 (6%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P + +LN A + K + L D + G D+ T N+++ ++S+ +L
Sbjct: 70 PSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSF 129
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG--RRDVCKIIRELDLEDY 173
L +++++G + TF SL+ + +E A ++V M E + DV +D
Sbjct: 130 LGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIID---- 185
Query: 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
S G + +F+++ I P + +YT+L+ G N GR D
Sbjct: 186 SLCKNGHVNYALSLFDQMENYGIRP-------------DVVMYTSLVNGLCNSGRWRDAD 232
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
+L M +++ PD +T+ ++ A VK G A ++ EM R+ + N TY L+
Sbjct: 233 SLLRGMTKRK---IKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLI 289
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
G+C + +D+A+++ M PDVV+Y LI+GF A+ F EM +G+
Sbjct: 290 NGFCMEGCVDEARQMFYLMETKGCF-PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGL 348
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413
I+YTTL++ F +P +A +VF M+ V +I +N+L+ C G V++A
Sbjct: 349 TGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRG-VPPNIRTYNVLLHCLCYNGKVKKAL 407
Query: 414 RIIERMKE---NGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
I E M++ +G PN+ TY L +G+ K +AL++++++++R
Sbjct: 408 MIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKR 454
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 110/466 (23%), Positives = 211/466 (45%), Gaps = 39/466 (8%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+PD +++LN + + + L DQM E G KPD T+ +I ++ V
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVA 209
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174
+++++++ G + T+ ++V GD+++A ++ M R +I ++
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLC 269
Query: 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVR 234
+ D +F ++ I P N Y +L+ N GR SD R
Sbjct: 270 KYRHVEVAVD--LFTEMETKGIRP-------------NVVTYNSLINCLCNYGRWSDASR 314
Query: 235 MLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294
+L M ++ N P+ VT+ ++ A K G + A ++ EM + + + ITYN+L+
Sbjct: 315 LLSNMLEKKIN---PNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLIN 371
Query: 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354
G+C ++D+AK++ + M + P++ +YN LI+GF + F EM RG+
Sbjct: 372 GFCMHNRLDEAKQMFKFMVSKDCL-PNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLV 430
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
++YTT+++ F + A VF +M+ + RV DI+ +++L+ G C G ++ A
Sbjct: 431 GNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSN-RVPTDIMTYSILLHGLCSYGKLDTALV 489
Query: 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474
I + ++++ N+ Y ++ G+ A K GEA L+ +
Sbjct: 490 IFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL-------------------S 530
Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520
+KPD + + ++A ++ M+E G PN Y +
Sbjct: 531 IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTL 576
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 583 | ||||||
| 225439751 | 749 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.759 | 0.797 | 0.0 | |
| 449440377 | 736 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.773 | 0.767 | 0.0 | |
| 15232734 | 778 | pentatricopeptide repeat-containing prot | 0.979 | 0.733 | 0.725 | 0.0 | |
| 297829500 | 772 | HCF152 [Arabidopsis lyrata subsp. lyrata | 0.979 | 0.739 | 0.727 | 0.0 | |
| 297741482 | 723 | unnamed protein product [Vitis vinifera] | 0.900 | 0.726 | 0.753 | 0.0 | |
| 62320586 | 778 | hypothetical protein [Arabidopsis thalia | 0.979 | 0.733 | 0.721 | 0.0 | |
| 224138602 | 751 | predicted protein [Populus trichocarpa] | 0.986 | 0.765 | 0.781 | 0.0 | |
| 255568420 | 740 | pentatricopeptide repeat-containing prot | 0.982 | 0.774 | 0.755 | 0.0 | |
| 356536919 | 716 | PREDICTED: pentatricopeptide repeat-cont | 0.982 | 0.800 | 0.730 | 0.0 | |
| 326502598 | 733 | predicted protein [Hordeum vulgare subsp | 0.948 | 0.754 | 0.628 | 0.0 |
| >gi|225439751|ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 970 bits (2508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/578 (79%), Positives = 518/578 (89%), Gaps = 9/578 (1%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
MLRSGYLPHVKAWS VVSRLAASGDDGP+E++KLFD V +R+ +F+D +V+DS+PDTAA
Sbjct: 175 MLRSGYLPHVKAWSAVVSRLAASGDDGPLEALKLFDSVTRRIHRFTDATLVADSRPDTAA 234
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YNAVLNACANLG K+FLQ+F++M + GA+PDVLTYNVMIKLCAR RK LLVFVLERIL
Sbjct: 235 YNAVLNACANLGDTKRFLQVFEEMTQLGAEPDVLTYNVMIKLCARVDRKDLLVFVLERIL 294
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
+ GI LCMTT SLVAAYVGFGDLE AE +VQAMREGR+D+CKI+R D +SEN G+
Sbjct: 295 DKGIQLCMTTLHSLVAAYVGFGDLETAEKLVQAMREGRQDLCKILR-----DVNSENPGN 349
Query: 181 DDDDDEVFEKLLPNSIN-PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239
++ +F+KLLPNS+ +SEPPLLPK +AP+SRIYTTLMKGYM EGRV+DTVRML AM
Sbjct: 350 NEG--YIFDKLLPNSVERNNSEPPLLPKAYAPDSRIYTTLMKGYMKEGRVTDTVRMLEAM 407
Query: 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299
R Q+D+ S PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR+TYNILLKGYC+Q
Sbjct: 408 RHQDDSTSQPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRVTYNILLKGYCEQ 467
Query: 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKIS 359
LQIDKAKEL+REM DD I PDVVSYN LIDG IL+DDSAGAL +FNEMRARGIAPTKIS
Sbjct: 468 LQIDKAKELVREMVDDEGIVPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGIAPTKIS 527
Query: 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
YTTLMKAFALS QPKLANKVFDEMLRDPRVKVD+VAWNMLVE +CR+GLVEEAK+ ++RM
Sbjct: 528 YTTLMKAFALSGQPKLANKVFDEMLRDPRVKVDLVAWNMLVEAHCRLGLVEEAKKTVQRM 587
Query: 420 KENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479
+ENGFYPNVATYGSLANGI+LARKPGEALLLW E+KERC VK+EG + S PPPLKPDE
Sbjct: 588 RENGFYPNVATYGSLANGIALARKPGEALLLWNEVKERCVVKEEGEISKSS-PPPLKPDE 646
Query: 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539
LLD LADICVRAAFFRKALEIVACMEE+GIPPNK+KY +IYVEMHSRMFTSKHAS+ARQ
Sbjct: 647 GLLDTLADICVRAAFFRKALEIVACMEENGIPPNKSKYTRIYVEMHSRMFTSKHASKARQ 706
Query: 540 DRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGDEY 577
DRR ERKRAAEAFKFWLGLPNSYYGSEWRL+P+DGD+Y
Sbjct: 707 DRRSERKRAAEAFKFWLGLPNSYYGSEWRLEPIDGDDY 744
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449440377|ref|XP_004137961.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Cucumis sativus] gi|449483612|ref|XP_004156638.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/580 (76%), Positives = 509/580 (87%), Gaps = 11/580 (1%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
MLRSGYLPHVKAWS VVSRLAAS DDGP E++KLF +V +R+R+F+DP I +DS+PDTAA
Sbjct: 162 MLRSGYLPHVKAWSAVVSRLAASPDDGPAEAIKLFSLVTQRLRRFADPTITADSRPDTAA 221
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YN VLNACAN+G +KFLQLF++M EFGA+PDVLTYNVMIKLCARA+RK L+V+VLE IL
Sbjct: 222 YNGVLNACANMGAYEKFLQLFEEMEEFGAEPDVLTYNVMIKLCARANRKDLIVYVLEAIL 281
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE--LD-LEDYSSEN 177
I +CMTT S+VAAYVGFGDLE AE +VQAMREG+RD+C+I+R+ LD +ED N
Sbjct: 282 AKDIPMCMTTLHSVVAAYVGFGDLETAEKVVQAMREGKRDICRILRDGYLDEIEDVEDLN 341
Query: 178 EGDDDDDDEVFEKLLPNSINPS--SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
E D+DE+F+KLLPN +N SEPPLLPK ++PNSRIYTTLMKGYMNEGRV DT+RM
Sbjct: 342 E----DEDELFKKLLPN-LNEEIDSEPPLLPKIYSPNSRIYTTLMKGYMNEGRVGDTIRM 396
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
L AMR Q D +SHPDHV+YTTVVSALVKAGSMDRARQVLAEMTRIG PANRITYNILLKG
Sbjct: 397 LEAMRNQGDRSSHPDHVSYTTVVSALVKAGSMDRARQVLAEMTRIGCPANRITYNILLKG 456
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
YC+ LQ+DKAK+L +EM D A IEPDVVSYNI+IDG IL+DDSAGAL FFNEMR++GIAP
Sbjct: 457 YCRLLQMDKAKDLFKEMVDGAGIEPDVVSYNIMIDGSILVDDSAGALGFFNEMRSKGIAP 516
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
TK+SYTTLMKAFA S QPKLA KVFDEML DPRVKVDIVAWNML+EGYCR+G +EEAK++
Sbjct: 517 TKVSYTTLMKAFAQSGQPKLARKVFDEMLNDPRVKVDIVAWNMLIEGYCRLGWIEEAKQL 576
Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475
+++MKENGF+P+V+TYGSLANGISLARKPGEALLLW E+KERC V++ G +DS PPPL
Sbjct: 577 VQKMKENGFFPDVSTYGSLANGISLARKPGEALLLWNEVKERCAVRR-GYKSDSSSPPPL 635
Query: 476 KPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS 535
KPDE LLD LADICVRAAFFRKALEIVACMEE+GIPPNKTKY +IYVEMHSRMFTSKHAS
Sbjct: 636 KPDEGLLDTLADICVRAAFFRKALEIVACMEENGIPPNKTKYSRIYVEMHSRMFTSKHAS 695
Query: 536 QARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGD 575
+ARQDRR E+KRAAEAFKFWLGLPNSYYGSEW +P D D
Sbjct: 696 KARQDRRIEKKRAAEAFKFWLGLPNSYYGSEWGWEPSDRD 735
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15232734|ref|NP_187576.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75204290|sp|Q9SF38.1|PP222_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09650, chloroplastic; AltName: Full=Protein HIGH CHLOROPHYLL FLUORESCENCE 152; Flags: Precursor gi|6682243|gb|AAF23295.1|AC016661_20 hypothetical protein [Arabidopsis thaliana] gi|332641272|gb|AEE74793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/597 (72%), Positives = 497/597 (83%), Gaps = 26/597 (4%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+RSGYLPHVKAW+ V+ L+ASGDDGP ES+KLF + +RV++F D +V S+PDTAA
Sbjct: 179 MIRSGYLPHVKAWTAAVASLSASGDDGPEESIKLFIAITRRVKRFGDQSLVGQSRPDTAA 238
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+NAVLNACANLG K+ +LF++M E+ +PDVLTYNVMIKLCAR RK L+VFVLERI+
Sbjct: 239 FNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERII 298
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL---------- 170
+ GI +CMTT SLVAAYVGFGDL AE IVQAMRE RRD+CK++RE +
Sbjct: 299 DKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKRRDLCKVLRECNAEDLKEKEEEE 358
Query: 171 -------------EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
YS+ +E ++ +VF+KLLPNS++PS EPPLLPK FAP+SRIYT
Sbjct: 359 AEDDEDAFEDDEDSGYSARDEVSEEGVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYT 418
Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
TLMKGYM GRV+DT RML AMRRQ+D SHPD VTYTTVVSA V AG MDRARQVLAEM
Sbjct: 419 TLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEM 478
Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
R+GVPANRITYN+LLKGYC+QLQID+A++LLREM +DA IEPDVVSYNI+IDG ILIDD
Sbjct: 479 ARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDD 538
Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
SAGAL FFNEMR RGIAPTKISYTTLMKAFA+S QPKLAN+VFDEM+ DPRVKVD++AWN
Sbjct: 539 SAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWN 598
Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
MLVEGYCR+GL+E+A+R++ RMKENGFYPNVATYGSLANG+S ARKPG+ALLLWKEIKER
Sbjct: 599 MLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKER 658
Query: 458 CEVKKEGVNADSD---LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
C VKK+ +DS PP LKPDE LLD LADICVRAAFF+KALEI+ACMEE+GIPPNK
Sbjct: 659 CAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNK 718
Query: 515 TKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP 571
TKYKKIYVEMHSRMFTSKHASQAR DRR ERKRAAEAFKFWLGLPNSYYGSEW+L P
Sbjct: 719 TKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGP 775
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829500|ref|XP_002882632.1| HCF152 [Arabidopsis lyrata subsp. lyrata] gi|297328472|gb|EFH58891.1| HCF152 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/598 (72%), Positives = 503/598 (84%), Gaps = 27/598 (4%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+RSGYLPHVKAW+ V+ L+A+GDDGP ES+KLF + +RV++F D +V+ S+PDTAA
Sbjct: 172 MIRSGYLPHVKAWTAAVASLSAAGDDGPEESIKLFTAITRRVKRFGDQSLVAQSRPDTAA 231
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+NAVLNACANLG +K+ +LFD+M E+ +PDVLTYNVMIKLCAR RK L+V+VLERI+
Sbjct: 232 FNAVLNACANLGDTEKYWKLFDEMSEWDCEPDVLTYNVMIKLCARVDRKELIVYVLERII 291
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL---------- 170
+ GI +CMTT SLVAAYVGFGDL AE IVQAMRE RRD+CK++RE +
Sbjct: 292 DKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKRRDLCKVLRECNAEDLKEKEEEE 351
Query: 171 --------------EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216
YS+ +E ++ ++VF+KLLPNS++PS +PPLLPK FAP+SRIY
Sbjct: 352 AAEDDEDAFEDDEDSGYSARDEVSEEGFEDVFKKLLPNSVDPSGDPPLLPKVFAPDSRIY 411
Query: 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAE 276
TTLMKGYM GRV+DT RML AMRRQ+D SHPD VTYTTVVSA VKAG MDRARQVLAE
Sbjct: 412 TTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVKAGLMDRARQVLAE 471
Query: 277 MTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336
M R+GVPANRITYN+LLKGYC+QLQID+A++LLREMA+DA IEPDVVSYNI+IDG ILID
Sbjct: 472 MARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMAEDAGIEPDVVSYNIIIDGCILID 531
Query: 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAW 396
DSAGAL FFNEMR RGIAPTKISYTTLMKAFA+S QPKLAN+VFDEM+ DPRVKVD++AW
Sbjct: 532 DSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAW 591
Query: 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456
NMLVEGYCR+GL+E+A+R++ RMKENGFYPNVATYGSLANG+SLARKPGEALLLWKEIKE
Sbjct: 592 NMLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSLARKPGEALLLWKEIKE 651
Query: 457 RCEVKKEGVNADSDLPPP---LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513
RCEVKK+ +DS P LKPDE LLD LADICVRAAFF+KALEI+ACMEE+GIPPN
Sbjct: 652 RCEVKKKEAPSDSSSDPSPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPN 711
Query: 514 KTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP 571
KTKYKKIYVEMHSRMFTSKHASQAR DRR ERKRAAEAFKFWLGLPNSYYGSEW+L P
Sbjct: 712 KTKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGP 769
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741482|emb|CBI32614.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/577 (75%), Positives = 485/577 (84%), Gaps = 52/577 (9%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
MLRSGYLPHVKAWS VVSRLAASGDDGP+E++KLFD V +R+ +F+D +V+DS+PDTAA
Sbjct: 183 MLRSGYLPHVKAWSAVVSRLAASGDDGPLEALKLFDSVTRRIHRFTDATLVADSRPDTAA 242
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
YNAVLNACANLG K+FLQ+F++M + GA+PDVLTYNVMIKLCAR RK LLVFVLERIL
Sbjct: 243 YNAVLNACANLGDTKRFLQVFEEMTQLGAEPDVLTYNVMIKLCARVDRKDLLVFVLERIL 302
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
+ GI LCMTT SLVAAYVGFGDLE AE +VQAMREGR+D+CKI+R++
Sbjct: 303 DKGIQLCMTTLHSLVAAYVGFGDLETAEKLVQAMREGRQDLCKILRDV------------ 350
Query: 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
NS NP+ +AP+SRIYTTLMKGYM EGRV+DTVRML AMR
Sbjct: 351 -------------NSENPA---------YAPDSRIYTTLMKGYMKEGRVTDTVRMLEAMR 388
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300
Q+D+ S PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR+TYNILLKGYC+QL
Sbjct: 389 HQDDSTSQPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRVTYNILLKGYCEQL 448
Query: 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360
QIDKAKEL+REM DD I PDVVSYN LIDG IL+DDSAGAL +FNEMRARGIAPTKISY
Sbjct: 449 QIDKAKELVREMVDDEGIVPDVVSYNTLIDGCILVDDSAGALAYFNEMRARGIAPTKISY 508
Query: 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
TTLMKAFALS QPKLANKVFDEMLRDPRVKVD+VAWNMLVE +CR+GLVEEAK+ ++RM+
Sbjct: 509 TTLMKAFALSGQPKLANKVFDEMLRDPRVKVDLVAWNMLVEAHCRLGLVEEAKKTVQRMR 568
Query: 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480
ENGFYPNVATYGSLANGI+LARKPGEALLLW E+KERC PDE
Sbjct: 569 ENGFYPNVATYGSLANGIALARKPGEALLLWNEVKERC------------------PDEG 610
Query: 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQD 540
LLD LADICVRAAFFRKALEIVACMEE+GIPPNK+KY +IYVEMHSRMFTSKHAS+ARQD
Sbjct: 611 LLDTLADICVRAAFFRKALEIVACMEENGIPPNKSKYTRIYVEMHSRMFTSKHASKARQD 670
Query: 541 RRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGDEY 577
RR ERKRAAEAFKFWLGLPNSYYGSEWRL+P+DGD+Y
Sbjct: 671 RRSERKRAAEAFKFWLGLPNSYYGSEWRLEPIDGDDY 707
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|62320586|dbj|BAD95223.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/597 (72%), Positives = 496/597 (83%), Gaps = 26/597 (4%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
M+RSG LPHVKAW+ V+ L+ASGD+GP ES+KLF + +RV++F D +V S+PDTAA
Sbjct: 179 MIRSGCLPHVKAWTAAVASLSASGDNGPEESIKLFIAITRRVKRFGDQSLVGQSRPDTAA 238
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+NAVLNACANLG K+ +LF++M E+ +PDVLTYNVMIKLCAR RK L+VFVLERI+
Sbjct: 239 FNAVLNACANLGDTDKYWKLFEEMSEWDCEPDVLTYNVMIKLCARVGRKELIVFVLERII 298
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL---------- 170
+ GI +CMTT SLVAAYVGFGDL AE IVQAMRE RRD+CK++RE +
Sbjct: 299 DKGIKVCMTTMHSLVAAYVGFGDLRTAERIVQAMREKRRDLCKVLRECNAEDLKEKEEEE 358
Query: 171 -------------EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217
YS+ +E ++ +VF+KLLPNS++PS EPPLLPK FAP+SRIYT
Sbjct: 359 AEDDEDAFEDDEDSGYSARDEVSEEGVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYT 418
Query: 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
TLMKGYM GRV+DT RML AMRRQ+D SHPD VTYTTVVSA V AG MDRARQVLAEM
Sbjct: 419 TLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEM 478
Query: 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337
R+GVPANRITYN+LLKGYC+QLQID+A++LLREM +DA IEPDVVSYNI+IDG ILIDD
Sbjct: 479 ARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDD 538
Query: 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397
SAGAL FFNEMR RGIAPTKISYTTLMKAFA+S QPKLAN+VFDEM+ DPRVKVD++AWN
Sbjct: 539 SAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWN 598
Query: 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
MLVEGYCR+GL+E+A+R++ RMKENGFYPNVATYGSLANG+S ARKPG+ALLLWKEIKER
Sbjct: 599 MLVEGYCRLGLIEDAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKER 658
Query: 458 CEVKKEGVNADSD---LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514
C VKK+ +DS PP LKPDE LLD LADICVRAAFF+KALEI+ACMEE+GIPPNK
Sbjct: 659 CAVKKKEAPSDSSSDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNK 718
Query: 515 TKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP 571
TKYKKIYVEMHSRMFTSKHASQAR DRR ERKRAAEAFKFWLGLPNSYYGSEW+L P
Sbjct: 719 TKYKKIYVEMHSRMFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGP 775
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138602|ref|XP_002322855.1| predicted protein [Populus trichocarpa] gi|222867485|gb|EEF04616.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/581 (78%), Positives = 513/581 (88%), Gaps = 6/581 (1%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
MLRSGYLPHVKAWS V+SRLA++ D GP ++KLF+ + +RVR+FSD +V+DS+PDTAA
Sbjct: 170 MLRSGYLPHVKAWSAVLSRLASAPDGGPTRALKLFNTITRRVRRFSDVTMVADSRPDTAA 229
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+N VLNACANLG K FL+LF++M +FG +PD+LTYN+MIKLCAR +RK LLVFVLER++
Sbjct: 230 FNNVLNACANLGDGKMFLKLFEEMPDFGLEPDILTYNIMIKLCARCNRKDLLVFVLERVI 289
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGD 180
E GI LCMTT SLVAAYVGFGDLE E +VQAMREGRRD+CKI+RE +LED++ + E +
Sbjct: 290 EKGIPLCMTTLHSLVAAYVGFGDLETVERMVQAMREGRRDLCKILREANLEDFNEDEENE 349
Query: 181 DDDDDE----VFEKLLPNSINPS-SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235
D + VFEKLLPN + S SEPPLLPK FAP+SRI+TTLMKGYM +GRV+DTVRM
Sbjct: 350 VLDSSQIGVSVFEKLLPNLVEVSNSEPPLLPKVFAPDSRIFTTLMKGYMKQGRVTDTVRM 409
Query: 236 LGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295
L AMR Q+D+ PDH+TYTTV+SALVKAGSMD ARQVLAEMTRIGVPANRITYNILLKG
Sbjct: 410 LEAMRCQDDSKGQPDHITYTTVISALVKAGSMDPARQVLAEMTRIGVPANRITYNILLKG 469
Query: 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
YCQQLQIDKAKELL+EMADD IEPDVVSYN LIDG IL+DDSAGAL FFNEMR +GI P
Sbjct: 470 YCQQLQIDKAKELLKEMADDVNIEPDVVSYNTLIDGCILVDDSAGALAFFNEMRTKGIMP 529
Query: 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415
TKISYTTLMKAFALS QPKLANKVFDEML+DPRVK D+VAWNML+EGYCR+GLV+EAK +
Sbjct: 530 TKISYTTLMKAFALSGQPKLANKVFDEMLKDPRVKADLVAWNMLLEGYCRLGLVDEAKTV 589
Query: 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP-PP 474
I+RMKENGF+P+VATYGSLANGISLARKPGEALLLWKE+KER EVK EG +++SD P P
Sbjct: 590 IQRMKENGFHPDVATYGSLANGISLARKPGEALLLWKEVKERWEVKGEGESSNSDSPLLP 649
Query: 475 LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHA 534
LKPDEELL LADICVRAAFF+KALEIVACMEE+GIPPNKTKYKKIYVEMHSRMFTSKHA
Sbjct: 650 LKPDEELLATLADICVRAAFFQKALEIVACMEENGIPPNKTKYKKIYVEMHSRMFTSKHA 709
Query: 535 SQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGD 575
SQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDP D D
Sbjct: 710 SQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPGDPD 750
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568420|ref|XP_002525184.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535481|gb|EEF37150.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/585 (75%), Positives = 510/585 (87%), Gaps = 12/585 (2%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
MLRSGYLPHVKAWS V+SRL++S DDGP +++KLF+ + +RVR+F+D +V+DS PDTAA
Sbjct: 155 MLRSGYLPHVKAWSAVISRLSSSPDDGPQQAIKLFNSITRRVRRFNDAALVADSNPDTAA 214
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERIL 120
+N+VLNACANLG K FLQLFDQM EFGA+PD+LTYNVMIKLCAR RK LLVFVLER++
Sbjct: 215 FNSVLNACANLGDGKMFLQLFDQMSEFGAEPDILTYNVMIKLCARCDRKDLLVFVLERVI 274
Query: 121 EMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSS----- 175
+ I LCMTT SLVAAYVGFGDLE AE + QAMREGRRD+CKI+RE+++ED
Sbjct: 275 QKRIPLCMTTLHSLVAAYVGFGDLETAEIMAQAMREGRRDLCKILREVNMEDLGYYGEDV 334
Query: 176 -ENEGDDDDDDE---VFEKLLPNSINPS-SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
EN D + + VFEKLLPNSI +EP LLPK +AP+SRIYTTLMKGYMN+GRVS
Sbjct: 335 IENSQRLDQNRKNMFVFEKLLPNSIQSGDTEPSLLPKVYAPDSRIYTTLMKGYMNQGRVS 394
Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
DT+RML AMR Q+DNASHPDHV+YTTV+SALVKAGSMDRARQVLAEMTRIGVPANRITYN
Sbjct: 395 DTIRMLEAMRHQDDNASHPDHVSYTTVISALVKAGSMDRARQVLAEMTRIGVPANRITYN 454
Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
ILLKG+CQ LQIDKAKELL+EM ++A+IEPDVVSYN +IDG I +DDSAGAL FFNEMR
Sbjct: 455 ILLKGHCQHLQIDKAKELLKEMDENAEIEPDVVSYNTMIDGCIQVDDSAGALAFFNEMRE 514
Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
+GIAPTKISYTTLMKAF+LS QPKLAN+VFDEM +DPRVKVD++AWN+LVE YC++GLVE
Sbjct: 515 KGIAPTKISYTTLMKAFSLSGQPKLANQVFDEMFKDPRVKVDLIAWNVLVEAYCKLGLVE 574
Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470
+AK+II+RMKENGF+PNVATYGSLA+GI+LARKPGEAL+LW E+KER E++KEG N+ SD
Sbjct: 575 QAKKIIQRMKENGFHPNVATYGSLASGIALARKPGEALILWNEVKERLEMQKEGHNSKSD 634
Query: 471 LPPP--LKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
LPPP KPDE +LD LADICVRAA F+KALEIVACMEE+GI PNK KYKKIYVEMHSRM
Sbjct: 635 LPPPPAFKPDEGMLDTLADICVRAALFQKALEIVACMEENGIFPNKMKYKKIYVEMHSRM 694
Query: 529 FTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMD 573
FTSKHASQAR DRRRERKRAAEAFKFWLGLPNSYYGSEW + P +
Sbjct: 695 FTSKHASQARVDRRRERKRAAEAFKFWLGLPNSYYGSEWGVGPTE 739
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536919|ref|XP_003536980.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/590 (73%), Positives = 501/590 (84%), Gaps = 17/590 (2%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGD--DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT 58
MLRSGYLPHVKAW+ VV+ LA+S D DGP E+++LF V +R+R+ DP + + S+PDT
Sbjct: 120 MLRSGYLPHVKAWTAVVACLASSPDRGDGPAEALQLFRSVTRRLRRLPDPAMAAASRPDT 179
Query: 59 AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLER 118
AA NA LNACANLG P+ FLQ+FD+M +F PD L+YN MIKLC R RK LLVFVLER
Sbjct: 180 AAVNAALNACANLGDPRAFLQVFDEMPQFNVAPDALSYNTMIKLCCRIGRKDLLVFVLER 239
Query: 119 ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178
+L++ I C+TT QSLV+AYV FGDLE AE +VQAMRE RRD+C++++E +YSS NE
Sbjct: 240 VLQLEIPFCVTTLQSLVSAYVEFGDLETAEKLVQAMREERRDICRVLKECSNLEYSSGNE 299
Query: 179 GDDDDDDE----------VFEKLLPNSINPSS---EPPLLPKTFAPNSRIYTTLMKGYMN 225
DDDDD+ +FEKLLPN ++ S EPPLLPK +APN+R YTTLMKGYMN
Sbjct: 300 SSDDDDDDDDDDDDDNDCIFEKLLPNLVDQSGNEVEPPLLPKGYAPNTRTYTTLMKGYMN 359
Query: 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN 285
GRVSDTVRML AMRR +D S PDHV+YTTVVSALVK G+MDRARQVLAEMTRIGVPAN
Sbjct: 360 AGRVSDTVRMLEAMRRLDDKGSQPDHVSYTTVVSALVKVGAMDRARQVLAEMTRIGVPAN 419
Query: 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345
ITYN+LLKGYC+QLQIDKA+ELL+EM DDA I+PDVVSYNILIDG IL+DDSAGAL+FF
Sbjct: 420 LITYNVLLKGYCKQLQIDKARELLKEMVDDAGIQPDVVSYNILIDGCILVDDSAGALSFF 479
Query: 346 NEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405
NEMRARGIAPTKISYTTLMKAFA S QPKLA++VF+EM DPRVKVD++AWNMLVEGYCR
Sbjct: 480 NEMRARGIAPTKISYTTLMKAFAYSGQPKLAHRVFNEMDSDPRVKVDLIAWNMLVEGYCR 539
Query: 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465
+GLVEEAK+++++MKE+GF+P+V TYGSLANGI+LARKPGEALLLW E+KERCEV KEG
Sbjct: 540 LGLVEEAKKVVQKMKESGFHPDVGTYGSLANGIALARKPGEALLLWNEVKERCEVGKEGG 599
Query: 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMH 525
+DS + PPLKPD LLD +ADICVRAAFFRKALEIVACMEE+GIPPNKTK+ +IYVEMH
Sbjct: 600 KSDSSV-PPLKPDGALLDTIADICVRAAFFRKALEIVACMEENGIPPNKTKFTRIYVEMH 658
Query: 526 SRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYY-GSEWRLDPMDG 574
SRMFTSKHAS+ARQDRR ERKRAAEAFKFWLGLPNSYY GSEWRL+PM+G
Sbjct: 659 SRMFTSKHASRARQDRRVERKRAAEAFKFWLGLPNSYYDGSEWRLEPMEG 708
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326502598|dbj|BAJ98927.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/584 (62%), Positives = 439/584 (75%), Gaps = 31/584 (5%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA 60
MLR G LP +A++ +SRL P +++LFD V+ +R+ D S + PDTAA
Sbjct: 157 MLRRGLLPDRRAYTAAISRLR------PAHALRLFDAVLHHLRRAPDSASPSFALPDTAA 210
Query: 61 YNAVLNACANLGKPKKFLQLFDQMHEF-GAKPDVLTYNVMIKLCARASRKHLLVFVLERI 119
+NAVL+ACA+ G ++F QLFD+M + A PD LTYNV IK+CARA R+ L+ VLERI
Sbjct: 211 FNAVLSACADAGDCRRFRQLFDEMRSWPSAAPDALTYNVAIKMCARAGRRDLVARVLERI 270
Query: 120 LEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEG 179
L GI C TTF SLVAAYVGFGD+ AE IVQAMREGR DVC ++R + +E G
Sbjct: 271 LSSGIAPCATTFHSLVAAYVGFGDIPTAERIVQAMREGRSDVCLLLRHVAVE-------G 323
Query: 180 DD---------DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
+D D+ +V E ++ SE PLL +T+ PNSR+YTTLMKGYMN GRV
Sbjct: 324 NDEKGIAVIVVDEHSDVLEDIVGPKPEEGSEVPLLSRTYPPNSRVYTTLMKGYMNAGRVD 383
Query: 231 DTVRMLGAMRRQEDN--ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
D V M AMRR+ + AS PDHVTYTTVVS L AG M+RA VL EM R GVPA+R+T
Sbjct: 384 DVVAMARAMRREGETMPASRPDHVTYTTVVSTLAAAGDMERAHAVLDEMARAGVPASRVT 443
Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEM 348
YN+L+KGYCQQLQ+ +A+ELL EM DA IE DVV+YN LIDG +L+DDSAGAL FNEM
Sbjct: 444 YNVLIKGYCQQLQMSRARELLEEMTTDAGIEADVVTYNTLIDGCVLMDDSAGALALFNEM 503
Query: 349 RARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408
RARG+AP+ +SYTTLMKAFA S QPK+A+ VF+EM +DPRV VD AWNMLVEGYC+ G+
Sbjct: 504 RARGVAPSTVSYTTLMKAFAASGQPKVAHNVFEEMEKDPRVTVDRPAWNMLVEGYCQQGM 563
Query: 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD 468
+E AK+ +ERMKE+G P+VATYGSLA GI++ARKPGEALLLW E+KERCE
Sbjct: 564 LETAKQTVERMKESGVQPDVATYGSLAKGIAVARKPGEALLLWNEVKERCEA------GS 617
Query: 469 SDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528
+ P L+PDEELLDALAD+CVR AFF+KALEIVACMEE+GI PNKTKYKKIY+EMHSRM
Sbjct: 618 GNGKPGLRPDEELLDALADVCVRGAFFKKALEIVACMEENGIAPNKTKYKKIYIEMHSRM 677
Query: 529 FTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLDPM 572
FTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWR+ P+
Sbjct: 678 FTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRVGPL 721
|
Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 583 | ||||||
| TAIR|locus:2074924 | 778 | HCF152 "HIGH CHLOROPHYLL FLUOR | 0.869 | 0.651 | 0.593 | 1.3e-157 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.646 | 0.5 | 0.284 | 2.9e-38 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.404 | 0.375 | 0.298 | 2.7e-34 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.415 | 0.459 | 0.312 | 5.1e-34 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.409 | 0.313 | 0.289 | 1e-32 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.692 | 0.641 | 0.243 | 3.5e-31 | |
| TAIR|locus:2174165 | 504 | AT5G16640 [Arabidopsis thalian | 0.399 | 0.462 | 0.298 | 3.8e-31 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.679 | 0.629 | 0.236 | 1e-27 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.605 | 0.548 | 0.269 | 1.1e-29 | |
| TAIR|locus:2015218 | 590 | AT1G63070 [Arabidopsis thalian | 0.641 | 0.633 | 0.24 | 6.7e-29 |
| TAIR|locus:2074924 HCF152 "HIGH CHLOROPHYLL FLUORESCENCE 152" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
Identities = 312/526 (59%), Positives = 371/526 (70%)
Query: 53 DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL 112
D +PD YN ++ CA +G+ + + + +++ + G K + T + ++
Sbjct: 266 DCEPDVLTYNVMIKLCARVGRKELIVFVLERIIDKGIKVCMTTMHSLVAAYVGFGDLRTA 325
Query: 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLED 172
+++ + E LC V DL+ E + E D + D ED
Sbjct: 326 ERIVQAMREKRRDLCK------VLRECNAEDLKEKE---EEEAEDDEDAFE-----DDED 371
Query: 173 --YSSENEGXXXXXXEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVS 230
YS+ +E +VF+KLLPNS++PS EPPLLPK FAP+SRIYTTLMKGYM GRV+
Sbjct: 372 SGYSARDEVSEEGVVDVFKKLLPNSVDPSGEPPLLPKVFAPDSRIYTTLMKGYMKNGRVA 431
Query: 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290
DT RML AMRRQ+D SHPD VTYTTVVSA V AG MDRARQVLAEM R+GVPANRITYN
Sbjct: 432 DTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYN 491
Query: 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350
+LLKGYC+QLQID+A++LLREM +DA IEPDVVSYNI+IDG ILIDDSAGAL FFNEMR
Sbjct: 492 VLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRT 551
Query: 351 RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410
RGIAPTKISYTTLMKAFA+S QPKLAN+VFDEM+ DPRVKVD++AWNMLVEGYCR+GL+E
Sbjct: 552 RGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIE 611
Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNXXXX 470
+A+R++ RMKENGFYPNVATYGSLANG+S ARKPG+ALLLWKEIKERC VKK+
Sbjct: 612 DAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKERCAVKKKEAPSDSS 671
Query: 471 XXXX---XXXXXXXXXXXXXICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527
ICVRAAFF+KALEI+ACMEE+GIPPNKTKYKKIYVEMHSR
Sbjct: 672 SDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNKTKYKKIYVEMHSR 731
Query: 528 MFTSKHASXXXXXXXXXXXXXXXXXXXWLGLPNSYYGSEWRLDPMD 573
MFTSKHAS WLGLPNSYYGSEW+L P +
Sbjct: 732 MFTSKHASQARIDRRVERKRAAEAFKFWLGLPNSYYGSEWKLGPRE 777
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 2.9e-38, Sum P(2) = 2.9e-38
Identities = 115/404 (28%), Positives = 193/404 (47%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFD-QMHEFGAKPDVLTYNVMIKLCARASRKHLLV 113
KPDT YN +LN + G K +++ +M +G KPDV T+NV+IK RA + +
Sbjct: 151 KPDTHFYNRMLNLLVD-GNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAI 209
Query: 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173
+LE + G+ TF +++ Y+ GDL+ A I + M E + + + +
Sbjct: 210 LMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF 269
Query: 174 SSENEGXXXXXXEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233
E E L N I S F P+ + TL+ G G V +
Sbjct: 270 CKEGR---------VEDAL-NFIQEMSNQD----GFFPDQYTFNTLVNGLCKAGHVKHAI 315
Query: 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293
++ M ++ PD TY +V+S L K G + A +VL +M N +TYN L+
Sbjct: 316 EIMDVMLQE---GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLI 372
Query: 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353
C++ Q+++A EL R + I PDV ++N LI G L + A+ F EMR++G
Sbjct: 373 STLCKENQVEEATELARVLTSKG-ILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431
Query: 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV---DIVAWNMLVEGYCRMGLVE 410
P + +Y L+ + L S+ KL + ML+ + ++ +N L++G+C+
Sbjct: 432 EPDEFTYNMLIDS--LCSKGKLDEAL--NMLKQMELSGCARSVITYNTLIDGFCKANKTR 487
Query: 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454
EA+ I + M+ +G N TY +L +G+ +R+ +A L ++
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 531
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 72/241 (29%), Positives = 128/241 (53%)
Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS 266
K PN Y +L+ N GR SD R+L M ++ N P+ VT+ ++ A K G
Sbjct: 287 KGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKIN---PNVVTFNALIDAFFKEGK 343
Query: 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326
+ A ++ EM + + + ITYN+L+ G+C ++D+AK++ + M + P++ +YN
Sbjct: 344 LVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCL-PNIQTYN 402
Query: 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386
LI+GF + F EM RG+ ++YTT+++ F + A VF +M+ +
Sbjct: 403 TLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSN 462
Query: 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446
RV DI+ +++L+ G C G ++ A I + ++++ N+ Y ++ G+ A K GE
Sbjct: 463 -RVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGE 521
Query: 447 A 447
A
Sbjct: 522 A 522
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 327 (120.2 bits), Expect = 5.1e-34, Sum P(2) = 5.1e-34
Identities = 78/250 (31%), Positives = 135/250 (54%)
Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
P+ +YT+L+ G N GR D +L M +++ PD +T+ ++ A VK G A
Sbjct: 210 PDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIK---PDVITFNALIDAFVKEGKFLDA 266
Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
++ EM R+ + N TY L+ G+C + +D+A+++ M PDVV+Y LI+
Sbjct: 267 EELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCF-PDVVAYTSLIN 325
Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
GF A+ F EM +G+ I+YTTL++ F +P +A +VF M+ V
Sbjct: 326 GFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMV-SRGVP 384
Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKE---NGFYPNVATYGSLANGISLARKPGEA 447
+I +N+L+ C G V++A I E M++ +G PN+ TY L +G+ K +A
Sbjct: 385 PNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKA 444
Query: 448 LLLWKEIKER 457
L++++++++R
Sbjct: 445 LMVFEDMRKR 454
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 71/245 (28%), Positives = 125/245 (51%)
Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
++ K + P+ + L+ GY + ++ + + +L M DN PD TY ++++ L K
Sbjct: 452 MISKGYFPDIFTFNILIHGYSTQLKMENALEILDVML---DNGVDPDVYTYNSLLNGLCK 508
Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
+ + M G N T+NILL+ C+ ++D+A LL EM + + + PD V
Sbjct: 509 TSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKS-VNPDAV 567
Query: 324 SYNILIDGFILIDDSAGALTFFNEMR-ARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382
++ LIDGF D GA T F +M A ++ + +Y ++ AF +A K+F E
Sbjct: 568 TFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQE 627
Query: 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442
M+ D + D + ++V+G+C+ G V + + M ENGF P++ T G + N + +
Sbjct: 628 MV-DRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVED 686
Query: 443 KPGEA 447
+ EA
Sbjct: 687 RVYEA 691
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 364 (133.2 bits), Expect = 3.5e-31, P = 3.5e-31
Identities = 105/431 (24%), Positives = 205/431 (47%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+PD N++LN + + + L QM E G +PD T+N +I R +R V
Sbjct: 148 EPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVA 207
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE--LD-LE 171
+++R++ G + T+ +V GD+++A ++++ M +G+ + +I +D L
Sbjct: 208 LVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALC 267
Query: 172 DYSSENEGXXXXXXEVFEKLLPNSINPSSE-----------------PPLLPKTFAPNSR 214
+Y + N+ + + PN + +S ++ + PN
Sbjct: 268 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 327
Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAM-RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
++ L+ ++ EG++ + ++ M +R D PD TY+++++ +D A+ +
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMIKRSID----PDIFTYSSLINGFCMHDRLDEAKHM 383
Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
M N +TYN L+KG+C+ ++D+ EL REM+ + + V+Y LI GF
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVG-NTVTYTTLIHGFF 442
Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
+ A F +M + G+ P ++Y+ L+ + + + A VF E L+ +++ DI
Sbjct: 443 QARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVF-EYLQRSKMEPDI 501
Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
+N+++EG C+ G VE+ + + G PNV TY ++ +G EA L++E
Sbjct: 502 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFRE 561
Query: 454 IKERCEVKKEG 464
+KE + G
Sbjct: 562 MKEEGPLPDSG 572
|
|
| TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 316 (116.3 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
Identities = 72/241 (29%), Positives = 127/241 (52%)
Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
P+ Y +L+ G + GR SD RM+ M ++E +PD T+ ++ A VK G + A
Sbjct: 219 PDVVTYNSLISGLCSSGRWSDATRMVSCMTKRE---IYPDVFTFNALIDACVKEGRVSEA 275
Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
+ EM R + + +TY++L+ G C ++D+A+E+ M PDVV+Y+ILI+
Sbjct: 276 EEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCF-PDVVTYSILIN 334
Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
G+ + F EM RG+ ++YT L++ + + + +A ++F M+ V
Sbjct: 335 GYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCG-VH 393
Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450
+I+ +N+L+ G C G +E+A I+ M++NG ++ TY + G+ K GE
Sbjct: 394 PNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMC---KAGEVADA 450
Query: 451 W 451
W
Sbjct: 451 W 451
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 335 (123.0 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 100/423 (23%), Positives = 201/423 (47%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
+PD +++LN + + + + L DQM +P+ +T+N +I ++ V
Sbjct: 147 EPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVA 206
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR--RDVCKIIRELD-LE 171
+++R++ G + T+ ++V GD+++A ++++ M +G+ DV +D L
Sbjct: 207 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALC 266
Query: 172 DYSSENEGXXXXXXEVFEKLLPNSINPSSE-----------------PPLLPKTFAPNSR 214
+Y + N+ + + PN + +S ++ + PN
Sbjct: 267 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 326
Query: 215 IYTTLMKGYMNEGRVSDTVRMLGAM-RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273
++ L+ ++ EG++ + ++ M +R D PD TY+++++ +D A+ +
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRSID----PDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 274 LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333
M N +TYN L+KG+C+ ++++ EL REM+ + + V+YN LI G
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG-NTVTYNTLIQGLF 441
Query: 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393
D A F +M + G+ P I+Y+ L+ + + A VF E L+ +++ DI
Sbjct: 442 QAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF-EYLQKSKMEPDI 500
Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453
+N+++EG C+ G VE+ + + G PNV Y ++ +G EA L++E
Sbjct: 501 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFRE 560
Query: 454 IKE 456
+KE
Sbjct: 561 MKE 563
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 104/386 (26%), Positives = 193/386 (50%)
Query: 86 EFGAKPDVLTYNVMIK-LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144
+ G +PD + +N ++ LC L V +R++EMG + T +LV G +
Sbjct: 151 KLGYEPDTVIFNTLLNGLCLECRVSEALELV-DRMVEMGHKPTLITLNTLVNGLCLNGKV 209
Query: 145 EIAETIVQAMRE-GRRD-----------VCK-----IIRELDLEDYSSENEGXXXXXXEV 187
A ++ M E G + +CK + EL L N +
Sbjct: 210 SDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMEL-LRKMEERNIKLDAVKYSI 268
Query: 188 F------EKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241
+ L N+ N +E + K F + Y TL+ G+ N GR D ++L M +
Sbjct: 269 IIDGLCKDGSLDNAFNLFNEMEI--KGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIK 326
Query: 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301
++ + P+ VT++ ++ + VK G + A Q+L EM + G+ N ITYN L+ G+C++ +
Sbjct: 327 RKIS---PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENR 383
Query: 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361
+++A +++ M +PD++++NILI+G+ + L F EM RG+ ++Y
Sbjct: 384 LEEAIQMVDLMISKG-CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYN 442
Query: 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421
TL++ F S + ++A K+F EM+ RV+ DIV++ +L++G C G +E+A I ++++
Sbjct: 443 TLVQGFCQSGKLEVAKKLFQEMV-SRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK 501
Query: 422 NGFYPNVATYGSLANGISLARKPGEA 447
+ ++ Y + +G+ A K +A
Sbjct: 502 SKMELDIGIYMIIIHGMCNASKVDDA 527
|
|
| TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 6.7e-29, P = 6.7e-29
Identities = 96/400 (24%), Positives = 192/400 (48%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFV 115
P N++LN + + + + L DQM E G +PD +T+ ++ + ++ V +
Sbjct: 143 PSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVAL 202
Query: 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE--LD-LED 172
+ER++ G + T+ +++ G+ ++A ++ M +G+ + +I +D L
Sbjct: 203 VERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCK 262
Query: 173 YSSENEGXXXXXXEVFEKLLPN--SINP-------------SSE--PPLLPKTFAPNSRI 215
Y ++ + + P+ + NP +S +L K P+
Sbjct: 263 YKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVF 322
Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
+ L+ ++ EG++ + ++ M + + PD V Y T++ K ++ +V
Sbjct: 323 FNALIDAFVKEGKLVEAEKLYDEMVKSKH--CFPDVVAYNTLIKGFCKYKRVEEGMEVFR 380
Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
EM++ G+ N +TY L+ G+ Q D A+ + ++M D + PD+++YNIL+DG
Sbjct: 381 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG-VHPDIMTYNILLDGLCNN 439
Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM-LRDPRVKVDIV 394
+ AL F M+ R + ++YTT+++A + + + +F + L+ VK ++V
Sbjct: 440 GNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKG--VKPNVV 497
Query: 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
+ ++ G+CR GL EEA + MKE+G PN TY +L
Sbjct: 498 TYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTL 537
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SF38 | PP222_ARATH | No assigned EC number | 0.7252 | 0.9794 | 0.7339 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00023058001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (732 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 583 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-11 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 1e-16
Identities = 73/309 (23%), Positives = 123/309 (39%), Gaps = 58/309 (18%)
Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
N + L+ G G+V+ G MR + PD V + ++SA ++G++DRA
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN---VKPDRVVFNALISACGQSGAVDRA 561
Query: 271 RQVLAEMTRIGVP--ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
VLAEM P + IT L+K Q+D+AKE+
Sbjct: 562 FDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV-------------------- 601
Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
+ + I T YT + + + A ++D+M +
Sbjct: 602 ----------------YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG- 644
Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448
VK D V ++ LV+ G +++A I++ ++ G +Y SL S A+ +AL
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704
Query: 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508
L+++IK L P + L+ AL + KALE+++ M+
Sbjct: 705 ELYEDIKS------------IKLRPTVSTMNALITALCE----GNQLPKALEVLSEMKRL 748
Query: 509 GIPPNKTKY 517
G+ PN Y
Sbjct: 749 GLCPNTITY 757
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 3e-14
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298
PD VTY T++ K G ++ A ++ EM + G+ N TY+IL+ G C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 4e-14
Identities = 54/231 (23%), Positives = 102/231 (44%), Gaps = 3/231 (1%)
Query: 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263
+ K P+ ++ L+ G V +L M+ E + PDH+T ++ A
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK-AETHPIDPDHITVGALMKACAN 591
Query: 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323
AG +DRA++V + + Y I + Q+ D A + +M ++PD V
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEV 650
Query: 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383
++ L+D D A + R +GI +SY++LM A + + K A +++++
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED- 709
Query: 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
++ +++ + N L+ C + +A ++ MK G PN TY L
Sbjct: 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 4e-14
Identities = 97/464 (20%), Positives = 175/464 (37%), Gaps = 116/464 (25%)
Query: 32 VKLFDVVVKRVRKFSDPDIVSDSKP--DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89
VK DVV R +V D P D ++NA+++ G+ + L+LF M E
Sbjct: 233 VKCGDVVSAR--------LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284
Query: 90 KPDVLTYNVMIKLCARASR----KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145
PD++T +I C + + +V++ + +++C SL+ Y+ G
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC----NSLIQMYLSLG--- 337
Query: 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205
+ E K+ ++ +D S
Sbjct: 338 -------SWGEAE----KVFSRMETKDAVS------------------------------ 356
Query: 206 PKTFAPNSRIYTTLMKGYMNEG---RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALV 262
+T ++ GY G + +T ++ E + PD +T +V+SA
Sbjct: 357 ----------WTAMISGYEKNGLPDKALETYALM------EQDNVSPDEITIASVLSACA 400
Query: 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
G +D ++ R G+ + + N L++ Y + IDKA E+ + E DV
Sbjct: 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-----EKDV 455
Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-------------- 368
+S+ +I G L + AL FF +M + P ++ + A A
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAH 514
Query: 369 -----LSSQPKLANKVFDEMLRDPRV----------KVDIVAWNMLVEGYCRMGLVEEAK 413
+ L N + D +R R+ + D+V+WN+L+ GY G A
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV 574
Query: 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457
+ RM E+G P+ T+ SL S + + L + ++E+
Sbjct: 575 ELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 9e-14
Identities = 20/48 (41%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332
+ +TYN L+ GYC++ ++++A +L EM I+P+V +Y+ILIDG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 2e-13
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437
D+V +N L++GYC+ G VEEA ++ MK+ G PNV TY L +G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.3 bits (158), Expect = 2e-13
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368
PDVV+YN LIDG+ AL FNEM+ RGI P +Y+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 4e-13
Identities = 84/411 (20%), Positives = 159/411 (38%), Gaps = 85/411 (20%)
Query: 53 DSKPDT--AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKH 110
D P+ A++ ++ + G ++ LF +M E G+ + T+ VM+ RAS
Sbjct: 182 DEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML----RASAGL 237
Query: 111 LLVFVLERI----LEMGITLCMTTFQS--LVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164
+++ L+ G+ TF S L+ Y GD+E + R
Sbjct: 238 GSARAGQQLHCCVLKTGV--VGDTFVSCALIDMYSKCGDIE----------DARC----- 280
Query: 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM 224
VF+ + + T A NS ++ GY
Sbjct: 281 ----------------------VFDGMPEKT------------TVAWNS-----MLAGYA 301
Query: 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
G + + + MR D+ D T++ ++ + ++ A+Q A + R G P
Sbjct: 302 LHGYSEEALCLYYEMR---DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358
Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTF 344
+ + L+ Y + +++ A+ + M +++S+N LI G+ A+
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEM 413
Query: 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404
F M A G+AP +++ ++ A S + ++F M + R+K + + ++E
Sbjct: 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473
Query: 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANG------ISLARKPGEALL 449
R GL++EA +I R F P V + +L + L R E L
Sbjct: 474 REGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.5 bits (148), Expect = 5e-12
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK-LC 103
PD YN +++ GK ++ L+LF++M + G KP+V TY+++I LC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 13/205 (6%)
Query: 241 RQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY--CQ 298
RQ P+ VT +SA + G++ +++ A + R G+ + N LL Y C
Sbjct: 479 RQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538
Query: 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358
++ + E DVVS+NIL+ G++ + A+ FN M G+ P ++
Sbjct: 539 RMNYAWNQFNSHE--------KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590
Query: 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418
++ +L+ A + S + F M + ++ + +V+ R G + EA I +
Sbjct: 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650
Query: 419 MKENGFYPNVATYGSLANGISLARK 443
M P+ A +G+L N + R
Sbjct: 651 MP---ITPDPAVWGALLNACRIHRH 672
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 5e-11
Identities = 63/303 (20%), Positives = 128/303 (42%), Gaps = 30/303 (9%)
Query: 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLA 275
+ T++ G ++ G + + M ED + T+ ++ A GS +Q+
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREM--WEDGSDAEPR-TFVVMLRASAGLGSARAGQQLHC 248
Query: 276 EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILI 335
+ + GV + L+ Y + I+ A+ + M E V++N ++ G+ L
Sbjct: 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALH 303
Query: 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395
S AL + EMR G++ + +++ +++ F+ + + A + ++R +DIVA
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVA 362
Query: 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455
LV+ Y + G +E+A+ + +RM N+ ++ +L G + +A+ +++ +
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM-EEHGIPPNK 514
EGV P+ A+ C + + EI M E H I P
Sbjct: 419 A------EGV----------APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462
Query: 515 TKY 517
Y
Sbjct: 463 MHY 465
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 65/309 (21%), Positives = 116/309 (37%), Gaps = 62/309 (20%)
Query: 53 DSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-----KPDVLTYNVMIKLCARAS 107
+ KPD +NA+++AC G + FD + E A PD +T ++K CA A
Sbjct: 537 NVKPDRVVFNALISACGQSGAVDR---AFDVLAEMKAETHPIDPDHITVGALMKACANAG 593
Query: 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167
+ V + I E I + V + GD + A +I M++
Sbjct: 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK----------- 642
Query: 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG 227
DEVF ++ L+ + G
Sbjct: 643 ------------KGVKPDEVF---------------------------FSALVDVAGHAG 663
Query: 228 RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287
+ +L R+Q V+Y++++ A A + +A ++ ++ I +
Sbjct: 664 DLDKAFEILQDARKQ---GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS 720
Query: 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347
T N L+ C+ Q+ KA E+L EM + P+ ++Y+IL+ DD+ L ++
Sbjct: 721 TMNALITALCEGNQLPKALEVLSEM-KRLGLCPNTITYSILLVASERKDDADVGLDLLSQ 779
Query: 348 MRARGIAPT 356
+ GI P
Sbjct: 780 AKEDGIKPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 4e-10
Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 5/224 (2%)
Query: 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA 270
P+ LMK N G+V D + + M + + P+ YT V++ + G D A
Sbjct: 577 PDHITVGALMKACANAGQV-DRAKEVYQMIHEYNIKGTPE--VYTIAVNSCSQKGDWDFA 633
Query: 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330
+ +M + GV + + ++ L+ +DKA E+L++ I+ VSY+ L+
Sbjct: 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG-IKLGTVSYSSLMG 692
Query: 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVK 390
+ AL + ++++ + PT + L+ A +Q A +V EM + +
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM-KRLGLC 751
Query: 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
+ + +++L+ R + ++ + KE+G PN+ +
Sbjct: 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 59/281 (20%), Positives = 109/281 (38%), Gaps = 66/281 (23%)
Query: 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVF 114
PD A++ ACAN G+ + +++ +HE+ K Y + + C++ +
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635
Query: 115 VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR-EGRRDVCKIIRELDLEDY 173
+ + + + G+ F +LV GDL+ A I+Q R +G + L Y
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK--------LGTVSY 687
Query: 174 SS-----ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228
SS N + E++E + + P
Sbjct: 688 SSLMGACSNAKNWKKALELYEDIKSIKLRP------------------------------ 717
Query: 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288
TV + A+ ++AL + + +A +VL+EM R+G+ N IT
Sbjct: 718 ---TVSTMNAL------------------ITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756
Query: 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329
Y+ILL ++ D +LL + +D I+P++V +
Sbjct: 757 YSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 9e-08
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
V +N L++G C+ G VEEA + + MKE G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 86/391 (21%), Positives = 147/391 (37%), Gaps = 88/391 (22%)
Query: 40 KRVRKFSDPDIVSDSKPDTAAYNAVLNA-CANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98
KR R S + + S T N+ L A C++ G+ ++ L+L + M E D Y
Sbjct: 36 KRSRGLS---VAASSSSSTHDSNSQLRALCSH-GQLEQALKLLESMQELRVPVDEDAYVA 91
Query: 99 MIKLCA--RASRKHLLVF--VLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAM 154
+ +LC RA + V L +G+ L ++++ +V FG+L A + M
Sbjct: 92 LFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG----NAMLSMFVRFGELVHAWYVFGKM 147
Query: 155 REGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214
E RD+ F+ N
Sbjct: 148 PE--RDL-----------------------------------------------FSWN-- 156
Query: 215 IYTTLMKGYMNEGRVSDTV----RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMD-- 268
L+ GY G + + RML A R PD T+ V+ G D
Sbjct: 157 ---VLVGGYAKAGYFDEALCLYHRMLWAGVR-------PDVYTFPCVLRTC--GGIPDLA 204
Query: 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328
R R+V A + R G + N L+ Y + + A+ + M D +S+N +
Sbjct: 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAM 259
Query: 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388
I G+ + L F MR + P ++ T+++ A L +L ++ +++
Sbjct: 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319
Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERM 419
VD+ N L++ Y +G EA+++ RM
Sbjct: 320 A-VDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 3e-07
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 281 GVPANRITYNILLKGYCQQLQIDKAKELLREM 312
G+ + +TYN L+ G C+ ++D+A ELL EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 7e-07
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424
V +N L+ GYC+ G +EEA + + MKE G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 80/379 (21%), Positives = 129/379 (34%), Gaps = 68/379 (17%)
Query: 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT-YTT 256
SS L N L + G+ + V ++ S Y
Sbjct: 318 VSSATNSLSLDKKNNGVKDAELPG--QSSGQAASDVEEENSLAAYNGGVSGKRKSPEYID 375
Query: 257 VVSALVKAGSMDRARQVLAEMTRIGVPA-NRITYNILLKGYCQQLQIDKAKELLREMADD 315
+ L++ G + +L +M + G+ ++I + K K + ++E
Sbjct: 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFK-------ACKKQRAVKEAFRF 428
Query: 316 AKI--EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373
AK+ P + ++N+L+ D GAL ++ G+ YTTL+ A S +
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 374 KLANKVFDEM----------------------------------LRDPRVKVDIVAWNML 399
+VF EM +R VK D V +N L
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 400 VEGYCRMGLVEEAKRIIERMKENG--FYPNVATYGSLANGISLARKPGEALLLWK----- 452
+ + G V+ A ++ MK P+ T G+L + A + A +++
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 453 EIKERCEVKKEGVNADS---DLPPPL-----------KPDEELLDALADICVRAAFFRKA 498
IK EV VN+ S D L KPDE AL D+ A KA
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 499 LEIVACMEEHGIPPNKTKY 517
EI+ + GI Y
Sbjct: 669 FEILQDARKQGIKLGTVSY 687
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 49/202 (24%), Positives = 83/202 (41%), Gaps = 32/202 (15%)
Query: 257 VVSAL----VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
VV+AL VK G + AR V M R + I++N ++ GY + + + EL M
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM 279
Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA----RGIAPTKISYTTLMKAFA 368
+ + ++PD+++ +I L+ D EM G A +L++ +
Sbjct: 280 RELS-VDPDLMTITSVISACELLGD----ERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN- 427
A KVF M D V+W ++ GY + GL ++A M+++ P+
Sbjct: 335 SLGSWGEAEKVFSRMETK-----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
Query: 428 ---------VATYGSLANGISL 440
A G L G+ L
Sbjct: 390 ITIASVLSACACLGDLDVGVKL 411
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 42/204 (20%), Positives = 86/204 (42%), Gaps = 10/204 (4%)
Query: 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312
TY +V A + S+ + V + G ++ N +L + + + A+ L EM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 313 ADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372
E ++ S+ +I G + + A F EM G ++ +++A A
Sbjct: 185 P-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239
Query: 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432
+ ++ +L+ V V+ L++ Y + G +E+A+ + + M E +
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCA-LIDMYSKCGDIEDARCVFDGMPEK----TTVAWN 294
Query: 433 SLANGISLARKPGEALLLWKEIKE 456
S+ G +L EAL L+ E+++
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRD 318
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 9e-06
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEM 277
PD VTY T++ L +AG +D A ++L EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.3 bits (101), Expect = 9e-06
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420
+K D+V +N L++G CR G V+EA +++ M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 55/272 (20%), Positives = 102/272 (37%), Gaps = 64/272 (23%)
Query: 44 KFSDPDIVSDSKPD--TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101
D V D P+ T A+N++L A G ++ L L+ +M + G D T+++MI+
Sbjct: 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161
+ +R + LE + L T F + A DL
Sbjct: 334 IFSRLAL-------LEHAKQAHAGLIRTGFPLDIVANTALVDL----------------Y 370
Query: 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI--YTTL 219
K G +D VF+++ P + + L
Sbjct: 371 SKW--------------GRMEDARNVFDRM-------------------PRKNLISWNAL 397
Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279
+ GY N GR + V M M + P+HVT+ V+SA +G ++ ++ M+
Sbjct: 398 IAGYGNHGRGTKAVEMFERMIAE---GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
Query: 280 I-GVPANRITYNILLKGYCQQLQIDKAKELLR 310
+ + Y +++ ++ +D+A ++R
Sbjct: 455 NHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93
YN +++ G+ ++ L+LF +M E G +PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322
+TYN L+ G C+ ++++A EL +EM + IEPDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM-KERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 42/186 (22%), Positives = 72/186 (38%), Gaps = 28/186 (15%)
Query: 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317
+S V+ G + A V +M + ++N+L+ GY + D+A L M A
Sbjct: 128 LSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AG 182
Query: 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY---------TTLMKAFA 368
+ PDV ++ ++ I D A R R + + + L+ +
Sbjct: 183 VRPDVYTFPCVLRTCGGIPDLA---------RGREVHAHVVRFGFELDVDVVNALITMYV 233
Query: 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428
A VFD M R D ++WN ++ GY G E + M+E P++
Sbjct: 234 KCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288
Query: 429 ATYGSL 434
T S+
Sbjct: 289 MTITSV 294
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 318 IEPDVVSYNILIDGFI---LIDDSAGALTFFNEMR 349
++PDVV+YN LIDG +D+ A+ +EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDE---AVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 287 ITYNILLKGYCQQLQIDKAKELLREM 312
+TYN L+ GYC+ ++++A EL +EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA 284
TY ++ AL KAG D A VL EM G+
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPT 356
V+YN LIDG AL F EM+ RGI P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282
VTY +++S KAG ++ A ++ EM GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACA 69
V +W+ +++ A G V+LF+ +V+ S PD + ++L AC+
Sbjct: 554 VVSWNILLTGYVAHGKGSMA--VELFNRMVE-----------SGVNPDEVTFISLLCACS 600
Query: 70 NLGKPKKFLQLFDQM-HEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGIT 125
G + L+ F M ++ P++ Y ++ L RA + L I +M IT
Sbjct: 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK---LTEAYNFINKMPIT 654
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 45/189 (23%), Positives = 73/189 (38%), Gaps = 26/189 (13%)
Query: 243 EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA-NRITYNILLKGYCQQLQ 301
E + PD V+ VK G + AR++ EM P N ++ ++ G
Sbjct: 150 ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM-----PERNLASWGTIIGGLVDAGN 204
Query: 302 IDKAKELLREMADD-AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR------GIA 354
+A L REM +D + EP +++ SAG + + G+
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFV--------VMLRASAGLGSARAGQQLHCCVLKTGVV 256
Query: 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414
L+ ++ + A VFD M P VAWN ++ GY G EEA
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTT--VAWNSMLAGYALHGYSEEALC 311
Query: 415 IIERMKENG 423
+ M+++G
Sbjct: 312 LYYEMRDSG 320
|
Length = 697 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
+ +YN L+ D AL EM+A G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP 91
YNA+L A A G P L + ++M G KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 323 VSYNILIDGFILIDDSAGALTFFNEMRARGI 353
V+YN LI G+ AL F EM+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 34.6 bits (81), Expect = 0.004
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240
K P+ Y TL+ G GRV + V +L M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.004
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426
+ +N L+ + G + A ++E MK +G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 583 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.98 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.73 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.57 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.46 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.43 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.38 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.36 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.34 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.31 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.26 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.21 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.15 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.15 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.09 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.07 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.06 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.97 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.93 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.85 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.83 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.83 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.81 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.8 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.8 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.8 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.67 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.65 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.63 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.6 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.59 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.54 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.49 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.48 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.48 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.44 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.43 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.43 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.42 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.4 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.34 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.27 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.25 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.01 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.97 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.95 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.92 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.9 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.88 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.83 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.8 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.79 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.76 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.74 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.72 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.72 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.69 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.68 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.67 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.66 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.63 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.63 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.63 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.62 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.62 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.61 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.56 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.55 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.52 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.51 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.46 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.46 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.45 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.45 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.44 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.38 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.34 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.34 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.33 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.31 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.3 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.26 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.25 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.22 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.2 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.19 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.17 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.13 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.12 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.11 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.08 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.07 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.01 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.0 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.98 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.95 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.92 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.9 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.9 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.89 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.87 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.74 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.69 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.57 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.48 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.46 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.45 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.4 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.39 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.28 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.21 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.21 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.2 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.15 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.13 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.1 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.99 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.99 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.91 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.82 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.78 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.76 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.73 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.69 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.53 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.49 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.47 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.4 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.38 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.35 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.32 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.28 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.27 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.21 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 95.14 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.05 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.03 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.91 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.78 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.54 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.51 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.37 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.32 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.3 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.24 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.16 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.07 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.03 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.84 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.84 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.81 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.5 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.49 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.37 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.35 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.13 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.89 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.88 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.72 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.71 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.61 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.42 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.19 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.94 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 91.77 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.67 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.66 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.65 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.59 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.51 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.39 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.35 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.34 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.21 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.98 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.94 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.84 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.52 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.02 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.67 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.22 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.14 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.14 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.09 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.92 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.71 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.18 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.87 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.8 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 87.77 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.46 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 87.3 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.83 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.38 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.29 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 86.12 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.06 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.92 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.92 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 85.69 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.45 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.32 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.09 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 85.05 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.95 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 84.82 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.69 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.46 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.07 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.99 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.58 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.41 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 83.3 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.24 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 82.38 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 81.72 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.23 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.16 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 81.1 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.24 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.16 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-62 Score=512.91 Aligned_cols=469 Identities=19% Similarity=0.303 Sum_probs=393.5
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 87 (583)
++...|..++..|++.|+ +++|+++|+.|.+. .-++++..+++.++..|.+.|..++|+.+|+.|..
T Consensus 368 ~~~~~~~~~y~~l~r~G~--l~eAl~Lfd~M~~~----------gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~- 434 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGR--IKDCIDLLEDMEKR----------GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN- 434 (1060)
T ss_pred CCchHHHHHHHHHHHCcC--HHHHHHHHHHHHhC----------CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-
Confidence 456677777778888777 88888888888763 11345666666777777777777777777776653
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHh
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 167 (583)
||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|...+..... ..
T Consensus 435 ---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv--vT 509 (1060)
T PLN03218 435 ---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV--HT 509 (1060)
T ss_pred ---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH--HH
Confidence 6777777777777777777777777777777777777777777777777777777777777777654321111 11
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCC
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 247 (583)
+......+.+.|++++|..+|+.|. ..++.||..+|+.+|.+|++.|++++|.++|.+|... ..++
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~-------------~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~-~~gi 575 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMR-------------SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPI 575 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHH-------------HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-cCCC
Confidence 2222344556677777777777765 2567899999999999999999999999999999763 1158
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 007970 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327 (583)
Q Consensus 248 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 327 (583)
.||..+|+++|.+|++.|++++|.++|+.|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~Tyns 654 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSA 654 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999965 789999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 007970 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407 (583)
Q Consensus 328 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 407 (583)
++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+.|.+ .++.||..+|+.||.+|++.|
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999987 489999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHH
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 487 (583)
++++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.+++..|.+. ++.||..+|++++.
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~----------------Gi~pd~~tynsLIg 797 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED----------------GIKPNLVMCRCITG 797 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 88999999999987
Q ss_pred HHHh----h-------------------hhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Q 007970 488 ICVR----A-------------------AFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 488 ~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 527 (583)
.|.+ . +..++|..+|++|.+.|+.||..+|..++ ..+..
T Consensus 798 lc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~ 859 (1060)
T PLN03218 798 LCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL-GCLQL 859 (1060)
T ss_pred HHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhcc
Confidence 7542 1 12467999999999999999999999984 55443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=534.07 Aligned_cols=489 Identities=21% Similarity=0.279 Sum_probs=439.3
Q ss_pred CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhh------------------------cCCccccccCCcCHHHHH
Q 007970 7 LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRK------------------------FSDPDIVSDSKPDTAAYN 62 (583)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~ 62 (583)
.||+++||.+|.+|++.|+ +++|+.+|++|....-. ........|+.||+.++|
T Consensus 149 ~~d~~~~n~li~~~~~~g~--~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGY--FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCeeEHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 4677777777777777776 77777777777542100 000011246677888888
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCC
Q 007970 63 AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFG 142 (583)
Q Consensus 63 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 142 (583)
++|.+|++.|++++|.++|+.|.. ||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 999999999999999999999874 7889999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 007970 143 DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222 (583)
Q Consensus 143 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 222 (583)
+++.|.+++..+...+...... .+......|.+.|++++|.++|+.+. .||..+|+.+|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~--~~n~Li~~y~k~g~~~~A~~vf~~m~-----------------~~d~~s~n~li~~ 363 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVS--VCNSLIQMYLSLGSWGEAEKVFSRME-----------------TKDAVSWTAMISG 363 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchH--HHHHHHHHHHhcCCHHHHHHHHhhCC-----------------CCCeeeHHHHHHH
Confidence 9999999999998765333222 22334456778899999999999987 6899999999999
Q ss_pred HHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302 (583)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 302 (583)
|++.|++++|+++|++|.+. ++.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.|++
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~---g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQD---NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHh---CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999999987 699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDE 382 (583)
Q Consensus 303 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 382 (583)
++|.++|++|. .+|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.+++..
T Consensus 441 ~~A~~vf~~m~-----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 441 DKALEVFHNIP-----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHHHHHHHhCC-----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 99999999995 47889999999999999999999999999986 5899999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhh
Q 007970 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462 (583)
Q Consensus 383 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 462 (583)
+.+. |+.++..++++||.+|++.|++++|.++|+.+ .||..+|+.++.+|++.|+.++|+++|++|.+.
T Consensus 515 ~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~----- 583 (857)
T PLN03077 515 VLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES----- 583 (857)
T ss_pred HHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Confidence 9884 99999999999999999999999999999987 589999999999999999999999999999987
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHH
Q 007970 463 EGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME-EHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDR 541 (583)
Q Consensus 463 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 541 (583)
|+.||..||..++.+|.+.|++++|.++|+.|. ++|+.|+..+|.++ ++++++.
T Consensus 584 -----------g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l-v~~l~r~------------- 638 (857)
T PLN03077 584 -----------GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV-VDLLGRA------------- 638 (857)
T ss_pred -----------CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH-HHHHHhC-------------
Confidence 789999999999999999999999999999998 78999999999998 9999998
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCccccc
Q 007970 542 RRERKRAAEAFKFWLGLPNSYYGSEWRL 569 (583)
Q Consensus 542 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 569 (583)
|++++|.++++.||-.|+...|..
T Consensus 639 ----G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 639 ----GKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred ----CCHHHHHHHHHHCCCCCCHHHHHH
Confidence 999999999999999999888864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-61 Score=504.82 Aligned_cols=487 Identities=17% Similarity=0.240 Sum_probs=421.5
Q ss_pred CCCCCC-CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHH
Q 007970 1 MLRSGY-LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQ 79 (583)
Q Consensus 1 m~~~g~-~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 79 (583)
|.+.|+ .|+..+++.++.+|++.|. .++|+.+|+.|. .||..+|+.++.+|++.|++++|.+
T Consensus 396 M~~~gvv~~~~v~~~~li~~~~~~g~--~~eAl~lf~~M~---------------~pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 396 MEKRGLLDMDKIYHAKFFKACKKQRA--VKEAFRFAKLIR---------------NPTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHCCC--HHHHHHHHHHcC---------------CCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 556675 4677788888888888887 888888877662 3788888888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhH
Q 007970 80 LFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159 (583)
Q Consensus 80 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 159 (583)
+|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|...+.
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888876542
Q ss_pred HHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 007970 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM 239 (583)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 239 (583)
.... ..+......+.+.|++++|.++|+.|... ..++.||..+|+.+|.+|++.|++++|.++|+.|
T Consensus 539 ~PD~--vTYnsLI~a~~k~G~~deA~~lf~eM~~~-----------~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 539 KPDR--VVFNALISACGQSGAVDRAFDVLAEMKAE-----------THPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred CCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------cCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2211 12233344455678888888888888521 1356899999999999999999999999999999
Q ss_pred HhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 007970 240 RRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE 319 (583)
Q Consensus 240 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 319 (583)
.+. ++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+ .|+.
T Consensus 606 ~e~---gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~ 681 (1060)
T PLN03218 606 HEY---NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIK 681 (1060)
T ss_pred HHc---CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCC
Confidence 998 699999999999999999999999999999999999999999999999999999999999999999965 7899
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007970 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399 (583)
Q Consensus 320 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 399 (583)
||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.+
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSIL 760 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999874 899999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHhHHHHHHHHHHH
Q 007970 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----A-------------------RKPGEALLLWKEIKE 456 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~ 456 (583)
+.+|++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|+.+|++|.+
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876432 1 124679999999998
Q ss_pred HhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhH
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQ 536 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~ 536 (583)
. |+.||..+|..++.++.+.+..+.+..+++.|...+..|+..+|+++ ++-++.
T Consensus 841 ~----------------Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~L-i~g~~~--------- 894 (1060)
T PLN03218 841 A----------------GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTL-VDGFGE--------- 894 (1060)
T ss_pred C----------------CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHH-HHhhcc---------
Confidence 7 89999999999998888999999999999999777888889999988 554332
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 007970 537 ARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 537 ~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
..++|+.++..|
T Consensus 895 ----------~~~~A~~l~~em 906 (1060)
T PLN03218 895 ----------YDPRAFSLLEEA 906 (1060)
T ss_pred ----------ChHHHHHHHHHH
Confidence 235788888665
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-60 Score=506.41 Aligned_cols=500 Identities=18% Similarity=0.262 Sum_probs=446.3
Q ss_pred CCCCCCCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHH
Q 007970 2 LRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLF 81 (583)
Q Consensus 2 ~~~g~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 81 (583)
++.|+.||+.+||.+|.+|++.|+ +++|..+|+.|. .||+.+||++|.+|++.|++++|+++|
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~--~~~A~~lf~~m~---------------~~d~~s~n~li~~~~~~g~~~eAl~lf 276 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGD--VVSARLVFDRMP---------------RRDCISWNAMISGYFENGECLEGLELF 276 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCC--HHHHHHHHhcCC---------------CCCcchhHHHHHHHHhCCCHHHHHHHH
Confidence 456777777777888888888888 888888888873 579999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHH
Q 007970 82 DQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDV 161 (583)
Q Consensus 82 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 161 (583)
++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|+.|... +.
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--d~ 354 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK--DA 354 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC--Ce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999763 22
Q ss_pred HHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007970 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241 (583)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (583)
. .+......+.+.|++++|.++|+.|.. .++.||..+|+.++.+|++.|++++|.+++..+.+
T Consensus 355 ~----s~n~li~~~~~~g~~~~A~~lf~~M~~-------------~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 355 V----SWTAMISGYEKNGLPDKALETYALMEQ-------------DNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred e----eHHHHHHHHHhCCCHHHHHHHHHHHHH-------------hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 2 233445667889999999999999873 46689999999999999999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007970 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD 321 (583)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 321 (583)
. |..|+..+|+.|+.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||
T Consensus 418 ~---g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd 488 (857)
T PLN03077 418 K---GLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPN 488 (857)
T ss_pred h---CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCC
Confidence 8 6999999999999999999999999999999875 5788999999999999999999999999964 58999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 007970 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401 (583)
Q Consensus 322 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 401 (583)
..+|+.++.+|++.|..+.+.+++..+.+.|+.++..++++++.+|++.|++++|.++|+.+ .+|..+|+++|.
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~ 562 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLT 562 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887 379999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHH
Q 007970 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEEL 481 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 481 (583)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+.. ++.|+..+
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---------------gi~P~~~~ 627 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY---------------SITPNLKH 627 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh---------------CCCCchHH
Confidence 999999999999999999999999999999999999999999999999999999554 78999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhccc------------c-----hhHHHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK------------H-----ASQARQDRRRE 544 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~------------~-----~~~~~~~~~~~ 544 (583)
|.+++++|.+.|++++|.+++++| ++.||..+|.++ +..+....... . ..-.-.+.+..
T Consensus 628 y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aL-l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 628 YACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGAL-LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 999999999999999999999999 489999999998 54443211110 0 01112456788
Q ss_pred HHHHHHHHHHHhcCCCC----CCCcccccCC
Q 007970 545 RKRAAEAFKFWLGLPNS----YYGSEWRLDP 571 (583)
Q Consensus 545 ~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 571 (583)
.|+.++|.++.+.|... ..+.-|....
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~ 734 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVK 734 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCccEEEEC
Confidence 89999999988777332 3367777543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-59 Score=485.38 Aligned_cols=443 Identities=19% Similarity=0.271 Sum_probs=374.4
Q ss_pred CCCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 007970 6 YLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMH 85 (583)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 85 (583)
+.||..+|+.++.+|++.++ .+.|.+++..|.+ .|+.||+.+||.++.+|++.|++++|.++|++|.
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~--~~~a~~l~~~m~~-----------~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~ 185 (697)
T PLN03081 119 FTLPASTYDALVEACIALKS--IRCVKAVYWHVES-----------SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP 185 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHH-----------hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC
Confidence 55666666666666666665 6666666666655 3566667777777777777777777777777665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHH
Q 007970 86 EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKII 165 (583)
Q Consensus 86 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 165 (583)
+ ||..+|+.+|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|.+.|..+.+.+++..+...+.....
T Consensus 186 ~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~-- 259 (697)
T PLN03081 186 E----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT-- 259 (697)
T ss_pred C----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc--
Confidence 3 6666777777777777777777777777776666677777777777777777777776666666554322111
Q ss_pred HhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC
Q 007970 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245 (583)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 245 (583)
.........|.+.|++++|.++|+.+. ++|..+|+.++.+|++.|++++|+++|++|.+.
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~-----------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--- 319 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMP-----------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS--- 319 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCC-----------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 112223456778999999999999997 689999999999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 007970 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY 325 (583)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 325 (583)
|+.||..||+.++.+|++.|++++|.+++..|.+.|++|+..+++.|+.+|++.|++++|.++|++|. .||..+|
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~ 394 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISW 394 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeH
Confidence 69999999999999999999999999999999999999999999999999999999999999999995 4799999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 007970 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405 (583)
Q Consensus 326 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 405 (583)
+.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+..++.|+..+|+.++.+|++
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998877999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHH
Q 007970 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDA 484 (583)
Q Consensus 406 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~ 484 (583)
.|++++|.+++++| ++.|+..+|+.++.+|...|+.+.|..+++++.+ +.|+ ..+|..
T Consensus 475 ~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~------------------~~p~~~~~y~~ 533 (697)
T PLN03081 475 EGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG------------------MGPEKLNNYVV 533 (697)
T ss_pred cCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC------------------CCCCCCcchHH
Confidence 99999999999876 5789999999999999999999999999998864 4665 579999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHcCCCCC
Q 007970 485 LADICVRAAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 485 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
|+++|.+.|++++|.++++.|.+.|+...
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999888643
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-58 Score=478.06 Aligned_cols=481 Identities=17% Similarity=0.249 Sum_probs=428.1
Q ss_pred CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 7 LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
+++..+|+.+|.+|++.|+ +++|+.+|+.|... .+..||..+|+.++.+|++.++++.|.+++..|.+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~--~~~Al~~f~~m~~~----------~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~ 151 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGR--HREALELFEILEAG----------CPFTLPASTYDALVEACIALKSIRCVKAVYWHVES 151 (697)
T ss_pred CCCceeHHHHHHHHHcCCC--HHHHHHHHHHHHhc----------CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4466799999999999999 99999999999763 34679999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHH
Q 007970 87 FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166 (583)
Q Consensus 87 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 166 (583)
.|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|...+........
T Consensus 152 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~ 227 (697)
T PLN03081 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227 (697)
T ss_pred hCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhH
Confidence 9999999999999999999999999999999995 479999999999999999999999999999876533222111
Q ss_pred hhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCC
Q 007970 167 ELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA 246 (583)
Q Consensus 167 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 246 (583)
......+...|....+.+++..+. ..++.+|..+|+.|+.+|++.|++++|.++|+.|.
T Consensus 228 --~~ll~a~~~~~~~~~~~~l~~~~~-------------~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------ 286 (697)
T PLN03081 228 --VVMLRASAGLGSARAGQQLHCCVL-------------KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------ 286 (697)
T ss_pred --HHHHHHHhcCCcHHHHHHHHHHHH-------------HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------
Confidence 111223345677888888888776 35667999999999999999999999999999884
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHH
Q 007970 247 SHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYN 326 (583)
Q Consensus 247 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 326 (583)
.+|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+ .|+.||..+|+
T Consensus 287 -~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~-~g~~~d~~~~~ 364 (697)
T PLN03081 287 -EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR-TGFPLDIVANT 364 (697)
T ss_pred -CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH-hCCCCCeeehH
Confidence 4588999999999999999999999999999999999999999999999999999999999999966 78899999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 007970 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406 (583)
Q Consensus 327 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 406 (583)
.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+. |+.||..||++++.+|++.
T Consensus 365 ~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~-g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 365 ALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999999985 468899999999999999999999999999874 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHH
Q 007970 407 GLVEEAKRIIERMKE-NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485 (583)
Q Consensus 407 g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 485 (583)
|..++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.++++++ ++.|+..+|++|
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-------------------~~~p~~~~~~~L 500 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-------------------PFKPTVNMWAAL 500 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-------------------CCCCCHHHHHHH
Confidence 999999999999975 689999999999999999999999999998765 468999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCC---
Q 007970 486 ADICVRAAFFRKALEIVACMEEHGIPPN-KTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNS--- 561 (583)
Q Consensus 486 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--- 561 (583)
+.+|...|+++.|.++++++. ++.|+ ..+|..+ ++++.+. |+.++|.++++.|...
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~L-~~~y~~~-----------------G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVVL-LNLYNSS-----------------GRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHHH-HHHHHhC-----------------CCHHHHHHHHHHHHHcCCc
Confidence 999999999999999999987 45665 5578776 8888888 9999999999888543
Q ss_pred -CCCcccccC
Q 007970 562 -YYGSEWRLD 570 (583)
Q Consensus 562 -~~~~~~~~~ 570 (583)
+++.-|..-
T Consensus 561 k~~g~s~i~~ 570 (697)
T PLN03081 561 MHPACTWIEV 570 (697)
T ss_pred cCCCeeEEEE
Confidence 457778653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-29 Score=273.90 Aligned_cols=437 Identities=14% Similarity=0.091 Sum_probs=328.5
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
.+++..++..+...+...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.++++.+.+ +.+..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 345566677777777777777777777777766432 244556666667777777777777777776654 445666777
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCH
Q 007970 134 LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213 (583)
Q Consensus 134 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (583)
+...+.+.|+.++|...++.+....+...... ...+..+...|++++|...++.+. ...+.+.
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~--------------~~~~~~~ 601 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA---LALAQYYLGKGQLKKALAILNEAA--------------DAAPDSP 601 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHH---HHHHHHHHHCCCHHHHHHHHHHHH--------------HcCCCCH
Confidence 77777777777777777777665544333222 122344556777788888877776 2335667
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
.+|..+..++...|++++|...|+.+.+. .+.+...+..+...+...|++++|..+++.+.+.. +.+...+..++
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 676 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLAL----QPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLA 676 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 78888888888888888888888888764 34456677788888888888888888888887754 55677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 373 (583)
..+...|++++|..+++.+.... +.+...+..+...+...|++++|...|+.+...+ |+..++..+..++.+.|++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence 88888888888888888886532 4566777888888888899999999998888763 4556777788888889999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
++|.+.++.+.+ ..+.+...+..+...|.+.|++++|.++|+++.+.. +++..++..+...+...|+ .+|+..+++
T Consensus 753 ~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 999998888877 456678888888888999999999999999988763 5577888888888888888 779999998
Q ss_pred HHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhccc
Q 007970 454 IKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532 (583)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~ 532 (583)
+.+. .|+ ..++..+..++.+.|++++|.++++++.+.+. .++..+..+ +..+...
T Consensus 829 ~~~~------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l-~~~~~~~---- 884 (899)
T TIGR02917 829 ALKL------------------APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHL-ALALLAT---- 884 (899)
T ss_pred HHhh------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHH-HHHHHHc----
Confidence 8865 444 46777888899999999999999999987543 256666655 7777776
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCC
Q 007970 533 HASQARQDRRRERKRAAEAFKFWLGLP 559 (583)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~a~~~~~~~~ 559 (583)
|+.++|.+.++++.
T Consensus 885 -------------g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 885 -------------GRKAEARKELDKLL 898 (899)
T ss_pred -------------CCHHHHHHHHHHHh
Confidence 99999999998763
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-27 Score=263.21 Aligned_cols=267 Identities=14% Similarity=0.155 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+..++..+...+.+.|+.++|..++.++... .+.+...+..++..+...|++++|..+++.+.+.. +.+...+..
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 606 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAEL----NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLM 606 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHH
Confidence 3444455555555555555555555554443 22233444445555555555555555555554432 334445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
+..+|...|++++|...|+.+.+.. +.+...+..+..++...|++++|..+|+++.... +.+..++..++..+...|
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 5555555555555555555554321 2233444455555555555555555555555432 223445555555555555
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 451 (583)
++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.|+++... .|+..++..+..++...|++++|.+.+
T Consensus 684 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 684 RTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred CHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555442 2334445555555555555555555555555543 233344455555555555555555555
Q ss_pred HHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+++.+.. +.+...+..+...|.+.|++++|...++++.+
T Consensus 760 ~~~l~~~-----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 760 EAWLKTH-----------------PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHhC-----------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5555431 22345555556666666666666666666654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-21 Score=215.88 Aligned_cols=449 Identities=11% Similarity=0.051 Sum_probs=309.7
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHH----------------HHHHHHHHHhcC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA----------------YNAVLNACANLG 72 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~li~~~~~~g 72 (583)
|...+...+..+.+.|+ .++|...++++.+. .|.+... ...+...+.+.|
T Consensus 61 ~p~~~~~~~~~~l~~g~--~~~A~~~l~~l~~~------------~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGD--SDGAQKLLDRLSQL------------APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred CHHHHHHHHHHHHhCCC--HHHHHHHHHHHHhh------------CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 46678888888889998 99999999999884 2223332 234455788999
Q ss_pred CcchHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHH
Q 007970 73 KPKKFLQLFDQMHEFGAKPDVL-TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIV 151 (583)
Q Consensus 73 ~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 151 (583)
++++|++.|+.+.+.+. |+.. ............|+.++|++.++++.+.. +.+...+..+...+...|+.++|+..+
T Consensus 127 ~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 127 RTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999987543 3322 11112222234589999999999999985 667788889999999999999999999
Q ss_pred HHHHhhhHHHH----HH----------------H-----------------Hhh--------------hhccccccCCCC
Q 007970 152 QAMREGRRDVC----KI----------------I-----------------REL--------------DLEDYSSENEGD 180 (583)
Q Consensus 152 ~~~~~~~~~~~----~~----------------~-----------------~~~--------------~~~~~~~~~~~~ 180 (583)
+++....+... .+ . ..+ ...+..+...|+
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~ 284 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ 284 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC
Confidence 98754321000 00 0 000 011344556799
Q ss_pred CCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHH------
Q 007970 181 DDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY------ 254 (583)
Q Consensus 181 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------ 254 (583)
+++|+..|++.+. ..+.+..++..+..++.+.|++++|+..|++..+..+ ..+....|
T Consensus 285 ~~~A~~~l~~aL~--------------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p--~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 285 GGKAIPELQQAVR--------------ANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP--HSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CccchhHHHHHHHh
Confidence 9999999999872 2355788999999999999999999999999887521 11111112
Q ss_pred ------HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 007970 255 ------TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL 328 (583)
Q Consensus 255 ------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 328 (583)
......+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|++.|+++++.. +.+...+..+
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L 425 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGL 425 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 122446778999999999999999875 5567778888999999999999999999987642 2223232222
Q ss_pred ------------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 329 ------------------------------------------IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 329 ------------------------------------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
...+...|++++|+..|++..+.. +-+...+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 233446788889999998888763 3356677788888
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------------------------
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN------------------------ 422 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------------ 422 (583)
+.+.|++++|...++++.+. .+.+...+..+...+...++.++|+..++.+...
T Consensus 505 ~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 88999999999999888763 2333333333333334444444444443332100
Q ss_pred ---------------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHH
Q 007970 423 ---------------GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALA 486 (583)
Q Consensus 423 ---------------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~ 486 (583)
..+++...+..+...+...|++++|+..|+++.+. .|+ ...+..++
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~------------------~P~~~~a~~~la 644 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR------------------EPGNADARLGLI 644 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHH
Confidence 02334445566677777888888888888888765 444 47777788
Q ss_pred HHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 487 DICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.+|...|++++|++.++...+ ..|+..
T Consensus 645 ~~~~~~g~~~eA~~~l~~ll~--~~p~~~ 671 (1157)
T PRK11447 645 EVDIAQGDLAAARAQLAKLPA--TANDSL 671 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHhc--cCCCCh
Confidence 888888888888888887764 344433
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-21 Score=212.30 Aligned_cols=425 Identities=11% Similarity=-0.008 Sum_probs=293.7
Q ss_pred cCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC-------------
Q 007970 23 SGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA------------- 89 (583)
Q Consensus 23 ~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------------- 89 (583)
.|+ .++|+..++++.+. .|.+...+..+...+...|++++|+..|+++.+...
T Consensus 160 ~g~--~~~A~~~L~~ll~~------------~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l 225 (1157)
T PRK11447 160 PAQ--RPEAINQLQRLNAD------------YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQI 225 (1157)
T ss_pred Ccc--HHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHH
Confidence 355 78888888888774 455778888999999999999999999998755321
Q ss_pred -----C--------------CCHHHH---------------------HHHHHHHHhcCChhHHHHHHHHHHHhCCCcchh
Q 007970 90 -----K--------------PDVLTY---------------------NVMIKLCARASRKHLLVFVLERILEMGITLCMT 129 (583)
Q Consensus 90 -----~--------------~~~~~~---------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 129 (583)
. |+...+ ......+...|++++|+..|++.++.. +.+..
T Consensus 226 ~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~ 304 (1157)
T PRK11447 226 KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSE 304 (1157)
T ss_pred hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 0 110000 011334567799999999999999875 55788
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHH---HH--------HhhhhccccccCCCCCCCcHHHHHhhcCCCCCC
Q 007970 130 TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK---II--------RELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198 (583)
Q Consensus 130 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 198 (583)
.+..+..++.+.|++++|+..|++..+..++... +. ......+..+...|++++|...|++++.
T Consensus 305 a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~----- 379 (1157)
T PRK11447 305 ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ----- 379 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 9999999999999999999999998876654321 10 0111224455678999999999999883
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH-----------------
Q 007970 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL----------------- 261 (583)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----------------- 261 (583)
..+.+..++..+..++...|++++|++.|+++.+. .+.+...+..+...+
T Consensus 380 ---------~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~----~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~ 446 (1157)
T PRK11447 380 ---------VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM----DPGNTNAVRGLANLYRQQSPEKALAFIASLSA 446 (1157)
T ss_pred ---------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 23456778889999999999999999999999875 223344444333333
Q ss_pred -------------------------HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007970 262 -------------------------VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316 (583)
Q Consensus 262 -------------------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 316 (583)
...|++++|++.+++.++.. |-+...+..+...|.+.|++++|...++++++..
T Consensus 447 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 447 SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455666666666555543 3344455555556666666666666666554321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 007970 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK---------ISYTTLMKAFALSSQPKLANKVFDEMLRDP 387 (583)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 387 (583)
+.+...+..+...+...++.++|+..++.+......++. ..+..+...+...|+.++|..+++.
T Consensus 526 --P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~----- 598 (1157)
T PRK11447 526 --PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ----- 598 (1157)
T ss_pred --CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----
Confidence 123333333333444556666666655544322111111 1122344556677777777777662
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccC
Q 007970 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467 (583)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 467 (583)
.+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|++++|++.++.+.+.
T Consensus 599 -~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~---------- 666 (1157)
T PRK11447 599 -QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT---------- 666 (1157)
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc----------
Confidence 24556677888999999999999999999999862 446788999999999999999999999988754
Q ss_pred CCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 468 DSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 468 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
.|+ ..++..+..++...|++++|.++++.+...
T Consensus 667 --------~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 667 --------ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred --------CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 554 466777888999999999999999999753
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-22 Score=188.37 Aligned_cols=406 Identities=14% Similarity=0.100 Sum_probs=332.0
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 007970 59 AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138 (583)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (583)
...-.+-..+.+..+++....--....+... .-..+|..+.+.+-..|++++|+.+++.+++.. +.....|..+..++
T Consensus 83 ~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al 160 (966)
T KOG4626|consen 83 ERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAAL 160 (966)
T ss_pred cceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHH
Confidence 3333444555666666665555544444332 346788889999999999999999999999875 55678899999999
Q ss_pred HcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 007970 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218 (583)
Q Consensus 139 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (583)
...|+.+.|...|....+..|+.......+ +......|++.+|..-|.+.+.. .+.=..+|+.
T Consensus 161 ~~~~~~~~a~~~~~~alqlnP~l~ca~s~l---gnLlka~Grl~ea~~cYlkAi~~--------------qp~fAiawsn 223 (966)
T KOG4626|consen 161 VTQGDLELAVQCFFEALQLNPDLYCARSDL---GNLLKAEGRLEEAKACYLKAIET--------------QPCFAIAWSN 223 (966)
T ss_pred HhcCCCcccHHHHHHHHhcCcchhhhhcch---hHHHHhhcccchhHHHHHHHHhh--------------CCceeeeehh
Confidence 999999999999998888777666554444 34455678999999888887622 1223678999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007970 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD-HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297 (583)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (583)
|...+-..|+...|+..|++..+. .|+ ...|..|...|...+.++.|...|....... +.....+..+...|.
T Consensus 224 Lg~~f~~~Gei~~aiq~y~eAvkl-----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 224 LGCVFNAQGEIWLAIQHYEEAVKL-----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYY 297 (966)
T ss_pred cchHHhhcchHHHHHHHHHHhhcC-----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEe
Confidence 999999999999999999999874 454 6789999999999999999999999988753 445677888888899
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377 (583)
Q Consensus 298 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 377 (583)
..|.++.|+..|++.+..+ +.=...|+.|..++-..|+..+|++.|.+.... .+......+.|..++...|.++.|.
T Consensus 298 eqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred ccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHH
Confidence 9999999999999998643 223568999999999999999999999999886 3445778899999999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV-ATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
.+|....+ -.+.-...++.|...|-+.|++++|+..|++.+. +.|+. ..|+.+...|-..|+.+.|++.+.+++.
T Consensus 375 ~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 375 RLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 99999886 2333356789999999999999999999999986 67764 5899999999999999999999999986
Q ss_pred HhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 516 (583)
. .|.. ..++.|..+|...|+..+|+.-++...+ ++||-..
T Consensus 451 ~------------------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpd 491 (966)
T KOG4626|consen 451 I------------------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPD 491 (966)
T ss_pred c------------------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCch
Confidence 4 8886 8999999999999999999999999884 6777543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-21 Score=179.52 Aligned_cols=427 Identities=15% Similarity=0.075 Sum_probs=342.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHc
Q 007970 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140 (583)
Q Consensus 61 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (583)
...|..-..+.|++++|.+.-...-+.+. .+....-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 55677777899999999998887766542 12233333445566666777666554444444 35677899999999999
Q ss_pred CCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH-HHHHH
Q 007970 141 FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR-IYTTL 219 (583)
Q Consensus 141 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 219 (583)
.|++++|+.+++.+.+..|+..+.. ...+.++...|+.+.|.+.|...++ +.|+.. +.+.+
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~---inla~al~~~~~~~~a~~~~~~alq---------------lnP~l~ca~s~l 190 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAY---INLAAALVTQGDLELAVQCFFEALQ---------------LNPDLYCARSDL 190 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHH---hhHHHHHHhcCCCcccHHHHHHHHh---------------cCcchhhhhcch
Confidence 9999999999999999887765544 3446677889999999999998872 235444 34455
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
.......|+.++|...|.+.... .+--...|+.|...+...|+...|+..|++..+.. |.-...|-.|...|...
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~----qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~ 265 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIET----QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEA 265 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhh----CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHH
Confidence 56666789999999999988874 23336789999999999999999999999999875 33467888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 379 (583)
+.++.|...|.+..... +.....+..+...|...|..+-|+..|++..+.. +.-...|+.+..++-..|+..+|.+.
T Consensus 266 ~~~d~Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 266 RIFDRAVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred hcchHHHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHH
Confidence 99999999999887542 3456778888888999999999999999999862 33478899999999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
|++... -.+......+.|...|...|.+++|..+|....+. .|. ...++.|...|-++|++++|+..|+++++
T Consensus 343 YnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-- 416 (966)
T KOG4626|consen 343 YNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-- 416 (966)
T ss_pred HHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--
Confidence 999987 34556778899999999999999999999999874 454 45789999999999999999999999985
Q ss_pred hhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHH
Q 007970 459 EVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQA 537 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~ 537 (583)
|+|+. ..|+.+...|...|+...|...+.+... +.|.-..-.+-+..++...
T Consensus 417 ----------------I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDs--------- 469 (966)
T KOG4626|consen 417 ----------------IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDS--------- 469 (966)
T ss_pred ----------------cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhcc---------
Confidence 59997 8999999999999999999999999875 5676554444446777776
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 007970 538 RQDRRRERKRAAEAFKFWL 556 (583)
Q Consensus 538 ~~~~~~~~~~~~~a~~~~~ 556 (583)
|...+|+.-++
T Consensus 470 --------Gni~~AI~sY~ 480 (966)
T KOG4626|consen 470 --------GNIPEAIQSYR 480 (966)
T ss_pred --------CCcHHHHHHHH
Confidence 88888886664
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-20 Score=183.16 Aligned_cols=279 Identities=16% Similarity=0.143 Sum_probs=212.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP---DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (583)
.+..++..+...+...|++++|..+++.+.... ..+ ....+..+...+.+.|+++.|..+|+.+.+.. +.+..
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 142 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP---DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEG 142 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHH
Confidence 445677888888888888888888888877641 111 12456777888888888888888888888753 45677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPD---VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 364 (583)
++..++..+.+.|++++|.+.++.+.+.....+. ...+..+...+...|++++|...|+++.+.. +.+...+..+.
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 221 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLG 221 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHH
Confidence 7888888888888888888888888654322211 1235566677788899999999999888753 33456777788
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444 (583)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 444 (583)
..+.+.|++++|.++|+++.+. .......+++.++.+|.+.|++++|.+.++++.+. .|+...+..++..+.+.|++
T Consensus 222 ~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~ 298 (389)
T PRK11788 222 DLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGP 298 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCH
Confidence 8888999999999999998763 11112456788888999999999999999998875 56777778888889999999
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR---AAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
++|..+++++.+. .|+...+..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 299 ~~A~~~l~~~l~~------------------~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 299 EAAQALLREQLRR------------------HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHh------------------CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 9999999988875 7888888877776654 458889999999998777777775
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-18 Score=179.60 Aligned_cols=258 Identities=12% Similarity=-0.029 Sum_probs=209.0
Q ss_pred hcCChhHHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 225 NEGRVSDTVRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 303 (583)
..+++++|.+.|+.....+ ...| ....+..+...+...|++++|+..++..++.. +.....|..+..++...|+++
T Consensus 306 ~~~~y~~A~~~~~~al~~~--~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLG--KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhhhHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHH
Confidence 3478999999999998752 1233 35678888888899999999999999999864 445678888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383 (583)
Q Consensus 304 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 383 (583)
+|...|+++++.. +.+...|..+...+...|++++|+..|++..... +.+...+..+..++.+.|++++|...|+..
T Consensus 383 eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 383 KAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999997642 4467888999999999999999999999999873 445777888888999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----H-HHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV-----A-TYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 384 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+ ..+.+...++.+..++...|++++|++.|++..+.....+. . .++.....+...|++++|.++++++...
T Consensus 460 l~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 460 KK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 87 34567888999999999999999999999999875211111 1 1122222344479999999999998865
Q ss_pred hhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 458 CEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
.|+. ..+..+..++.+.|++++|.+.+++..+.
T Consensus 538 ------------------~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 538 ------------------DPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred ------------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5554 67888999999999999999999998763
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-18 Score=176.15 Aligned_cols=432 Identities=14% Similarity=0.030 Sum_probs=292.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
.+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++.+ +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4557788889999999999999999874 5778889999999999999999999999999875 556778999999999
Q ss_pred cCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
..|++++|+.-|..+...++.............. . ..+.......+. ..+.+...+..+
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l---~----~~a~~~~~~~l~--------------~~~~~~~~~~~~ 264 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLL---K----KFAESKAKEILE--------------TKPENLPSVTFV 264 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH---H----HHHHHHHHHHHh--------------cCCCCCCCHHHH
Confidence 9999999998886654322111000000000000 0 001111111110 001111122222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHH---HHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPD-HVTYTTVVSA---LVKAGSMDRARQVLAEMTRIG--VPANRITYNILL 293 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~ 293 (583)
.. |....+......-+..... ..+. ...+..+... ....+++++|.+.|+...+.+ .+.....+..+.
T Consensus 265 ~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg 338 (615)
T TIGR00990 265 GN-YLQSFRPKPRPAGLEDSNE-----LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338 (615)
T ss_pred HH-HHHHccCCcchhhhhcccc-----cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 22 2222222222221221111 1111 1111111111 123478999999999999765 233556788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 373 (583)
.++...|++++|+..|++.+... +.....|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 89999999999999999997642 3346688888899999999999999999998863 44678889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
++|...|++..+ ..+.+...+..+..++.+.|++++|+..|++..+. .+.+...++.+..++...|++++|+..|++
T Consensus 416 ~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 416 AQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999987 34566788888999999999999999999999875 344578899999999999999999999999
Q ss_pred HHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhhhhhcc
Q 007970 454 IKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK-YKKIYVEMHSRMFTS 531 (583)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~~~~~~l~~~~~~ 531 (583)
+.+.... ..+..++. ..+...+..+...|++++|..++++..+ +.|+... +..+ ..++.+.
T Consensus 493 Al~l~p~-----------~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~l-a~~~~~~--- 555 (615)
T TIGR00990 493 AIELEKE-----------TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATM-AQLLLQQ--- 555 (615)
T ss_pred HHhcCCc-----------cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHH-HHHHHHc---
Confidence 9875210 00001111 1122222334457999999999999875 4565543 3333 4444444
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 532 KHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
|++++|+++++..
T Consensus 556 --------------g~~~eAi~~~e~A 568 (615)
T TIGR00990 556 --------------GDVDEALKLFERA 568 (615)
T ss_pred --------------cCHHHHHHHHHHH
Confidence 8888888877654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-19 Score=177.19 Aligned_cols=297 Identities=12% Similarity=0.094 Sum_probs=206.5
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCC
Q 007970 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181 (583)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (583)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+......
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--------------------- 101 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDL--------------------- 101 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCC---------------------
Confidence 3455667777777777777664 445556677777777777777777777666541000
Q ss_pred CCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 007970 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261 (583)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (583)
.......++..++..|.+.|++++|.++|..+.+. .+.+..++..++..+
T Consensus 102 --------------------------~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~ 151 (389)
T PRK11788 102 --------------------------TREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE----GDFAEGALQQLLEIY 151 (389)
T ss_pred --------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC----CcchHHHHHHHHHHH
Confidence 00011245667777777778888888877777664 334566777777777
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 007970 262 VKAGSMDRARQVLAEMTRIGVPAN----RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 337 (583)
.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|+
T Consensus 152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 152 QQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCC
Confidence 778888888888877776542221 1234556667778888888888888876532 3345567777788888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007970 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417 (583)
Q Consensus 338 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 417 (583)
+++|.++|+++...+......++..++.+|...|++++|...++.+.+. .|+...+..++..+.+.|++++|.++++
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888876532222456777888888888888888888888763 3555666788888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHHH
Q 007970 418 RMKENGFYPNVATYGSLANGISL---ARKPGEALLLWKEIKER 457 (583)
Q Consensus 418 ~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 457 (583)
++.+. .|+..+++.++..+.. .|+.++++.+++++.+.
T Consensus 307 ~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 307 EQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 88764 5788888877776654 45788888888888875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-18 Score=174.71 Aligned_cols=333 Identities=9% Similarity=0.022 Sum_probs=270.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
-...++..+.+.|++++|..+++........ +...+..++.++...|+++.|...++++.+.. |.+...+..+..++.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445677788999999999999999887654 34455566677778999999999999999985 667788889999999
Q ss_pred cCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
..|++++|...++...... +.+...+..+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~---------------------------------------------------P~~~~a~~~l 150 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF---------------------------------------------------SGNSQIFALH 150 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC---------------------------------------------------CCcHHHHHHH
Confidence 9999999999999887632 4557788899
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
..++...|++++|...+..+... .+.+...+..+ ..+...|++++|...++.+.+....++......+..++...
T Consensus 151 a~~l~~~g~~~eA~~~~~~~~~~----~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 225 (656)
T PRK15174 151 LRTLVLMDKELQAISLARTQAQE----VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAV 225 (656)
T ss_pred HHHHHHCCChHHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHC
Confidence 99999999999999999988764 22333344333 34788999999999999988765334445556667888999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG----ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 375 (583)
|++++|+..++++.... +.+...+..+...+...|++++ |+..|++..... +.+...+..+...+...|++++
T Consensus 226 g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 226 GKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999997642 4567788889999999999986 899999998863 4467788899999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT-YGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
|...++.+.+ ..+.+...+..+..++.+.|++++|++.++++... .|+... +..+..++...|++++|+..|+++
T Consensus 303 A~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 303 AIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999987 34556777888999999999999999999999875 455433 444567789999999999999999
Q ss_pred HHH
Q 007970 455 KER 457 (583)
Q Consensus 455 ~~~ 457 (583)
.+.
T Consensus 379 l~~ 381 (656)
T PRK15174 379 IQA 381 (656)
T ss_pred HHh
Confidence 876
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-18 Score=173.30 Aligned_cols=332 Identities=10% Similarity=0.022 Sum_probs=271.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhcccc
Q 007970 95 TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174 (583)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (583)
-...++..+.+.|+++.|..+++...... +-+...+..++.+....|++++|...++.+....
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~---------------- 106 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN---------------- 106 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC----------------
Confidence 34556777889999999999999998875 5556677777788888999999999999988732
Q ss_pred ccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHH
Q 007970 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254 (583)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 254 (583)
|.+...+..+...+...|++++|.+.++++... .+.+...+
T Consensus 107 -----------------------------------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l----~P~~~~a~ 147 (656)
T PRK15174 107 -----------------------------------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA----FSGNSQIF 147 (656)
T ss_pred -----------------------------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHH
Confidence 455778889999999999999999999999885 34457788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 007970 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334 (583)
Q Consensus 255 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 334 (583)
..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+++... .++...+..+..++..
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA-LERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHH
Confidence 899999999999999999999887664 2334444333 347889999999999999876422 2334455566778889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL----ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (583)
.|++++|+..++++.... +.+...+..+...+...|++++ |...|+++.+ ..+.+...+..+...+.+.|+++
T Consensus 225 ~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~ 301 (656)
T PRK15174 225 VGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNE 301 (656)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999874 4467778889999999999985 8999999987 34567889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHH
Q 007970 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADIC 489 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~ 489 (583)
+|+..+++..+.. +.+...+..+..++...|++++|+..++++.+. .|+. ..+..+..++
T Consensus 302 eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~------------------~P~~~~~~~~~a~al 362 (656)
T PRK15174 302 KAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE------------------KGVTSKWNRYAAAAL 362 (656)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CccchHHHHHHHHHH
Confidence 9999999999863 335667778888999999999999999999876 6665 3344457788
Q ss_pred HhhhhHHHHHHHHHHHHH
Q 007970 490 VRAAFFRKALEIVACMEE 507 (583)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~ 507 (583)
...|++++|...++...+
T Consensus 363 ~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 363 LQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999999875
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-17 Score=175.55 Aligned_cols=409 Identities=11% Similarity=0.043 Sum_probs=298.2
Q ss_pred HHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCH
Q 007970 14 STVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93 (583)
Q Consensus 14 ~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 93 (583)
.-.+......|+ .++|+.++.+.... .+.+...+..+...+.+.|++++|..+|+...+... .+.
T Consensus 19 ~d~~~ia~~~g~--~~~A~~~~~~~~~~------------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~ 83 (765)
T PRK10049 19 ADWLQIALWAGQ--DAEVITVYNRYRVH------------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QND 83 (765)
T ss_pred HHHHHHHHHcCC--HHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCH
Confidence 334455666777 88999888888652 344566788899999999999999999999887542 345
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 007970 94 LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173 (583)
Q Consensus 94 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (583)
..+..+..++...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++....
T Consensus 84 ~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--------------- 146 (765)
T PRK10049 84 DYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--------------- 146 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------
Confidence 667778888889999999999999998874 55666 8888888999999999999998888742
Q ss_pred cccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCH--
Q 007970 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH-- 251 (583)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-- 251 (583)
+.+...+..+..++...+..++|++.++..... |+.
T Consensus 147 ------------------------------------P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~------p~~~~ 184 (765)
T PRK10049 147 ------------------------------------PQTQQYPTEYVQALRNNRLSAPALGAIDDANLT------PAEKR 184 (765)
T ss_pred ------------------------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC------HHHHH
Confidence 345666677788888889999999888766531 221
Q ss_pred ----HHHHHHHHHHH-----HcCCh---HHHHHHHHHHHhC-CCCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 007970 252 ----VTYTTVVSALV-----KAGSM---DRARQVLAEMTRI-GVPANRI-TYN----ILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 252 ----~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
.....++.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 11122222221 12234 7788888888854 1222221 111 11334567799999999999997
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--
Q 007970 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP---TKISYTTLMKAFALSSQPKLANKVFDEMLRDPR-- 388 (583)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 388 (583)
+.....|+. .-..+...|...|++++|+.+|+++....... .......+..++...|++++|..+++.+.....
T Consensus 265 ~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~ 343 (765)
T PRK10049 265 AEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF 343 (765)
T ss_pred ccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce
Confidence 643222332 22224678899999999999999987653111 124456667788899999999999999876311
Q ss_pred --------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 389 --------VKVD---IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 389 --------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..|+ ...+..+...+...|++++|+++++++... .+.+...+..+...+...|++++|++.++++.+.
T Consensus 344 ~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 344 LRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred EeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1123 235567788899999999999999999876 3556778889999999999999999999999976
Q ss_pred hhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 458 CEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
.|+. ..+..++..+...|++++|+++++.+.+ ..|+.....
T Consensus 423 ------------------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~ 464 (765)
T PRK10049 423 ------------------EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQ 464 (765)
T ss_pred ------------------CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 6774 6777788899999999999999999986 567766443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-17 Score=170.21 Aligned_cols=213 Identities=12% Similarity=0.031 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 379 (583)
++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...
T Consensus 490 ~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 490 TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444455544444332 233332222333334666677777776665443 33334444555566666777777777
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhh
Q 007970 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459 (583)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 459 (583)
++...+. .+.+...+..+.....+.|++++|...+++..+. .|+...+..+..++.+.|++++|+..++++...
T Consensus 565 l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-- 638 (987)
T PRK09782 565 LQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL-- 638 (987)
T ss_pred HHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 7666552 1223333333333334457777777777777653 456667777777777777777777777777765
Q ss_pred hhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHH
Q 007970 460 VKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQAR 538 (583)
Q Consensus 460 ~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~ 538 (583)
.|+. ..+..+..++...|++++|+..+++..+ ..|+.......+..++...
T Consensus 639 ----------------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~l---------- 690 (987)
T PRK09782 639 ----------------EPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRL---------- 690 (987)
T ss_pred ----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC----------
Confidence 5544 5666666777777777777777777764 3454433222223333333
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 007970 539 QDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 539 ~~~~~~~~~~~~a~~~~~~~ 558 (583)
|++++|.+.+++.
T Consensus 691 -------Gd~~eA~~~l~~A 703 (987)
T PRK09782 691 -------DDMAATQHYARLV 703 (987)
T ss_pred -------CCHHHHHHHHHHH
Confidence 6777777666554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-17 Score=164.15 Aligned_cols=499 Identities=13% Similarity=0.089 Sum_probs=331.5
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
|++..+.|.+.|--.|+ +..+..+...+.... ..-.--+.+|--+.++|...|++++|...|.+..+..
T Consensus 269 nP~~l~~LAn~fyfK~d--y~~v~~la~~ai~~t---------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKD--YERVWHLAEHAIKNT---------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred CcHHHHHHHHHHhhccc--HHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 55667777777777776 777777777666531 0001124457777788888888888888877776643
Q ss_pred CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCC----ChHHHHHHHHHHHhhhHHHH
Q 007970 89 AKPDV--LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFG----DLEIAETIVQAMREGRRDVC 162 (583)
Q Consensus 89 ~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~ 162 (583)
++. ..+--|.+.+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+.....+...
T Consensus 338 --~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 338 --NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred --CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 333 334456677778888888888888877763 556667777777776654 44556666665555433222
Q ss_pred HHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007970 163 KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242 (583)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (583)
..+-. .+..+ ..++...+..+|..+... +...+.++.+...|.+...+...|.+..|...|......
T Consensus 415 ~a~l~---laql~-e~~d~~~sL~~~~~A~d~---------L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 415 EAWLE---LAQLL-EQTDPWASLDAYGNALDI---------LESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHH---HHHHH-HhcChHHHHHHHHHHHHH---------HHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 21111 11111 123333334444433210 111233467788888888889999999999998887765
Q ss_pred ccCCCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007970 243 EDNASHPDH------VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316 (583)
Q Consensus 243 ~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 316 (583)
-..-..++. .+-..+....-..++.+.|.+.|..+.+.. |--...|..+..+....+...+|...+..++...
T Consensus 482 ~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 482 LLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 111112222 122234445556678889999999888763 2223334444433444577888988888887544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHH
Q 007970 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFAL------------SSQPKLANKVFDEM 383 (583)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~ 383 (583)
..++..++.+...+.+...+..|.+-|....+.- ..+|..+..+|...|.+ .+..++|+++|.++
T Consensus 561 --~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 561 --SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred --cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 4455566667777888888888888666655431 23566676667665543 34568899999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhc
Q 007970 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463 (583)
Q Consensus 384 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 463 (583)
++ ..+.|..+-|.+..+++..|++.+|..+|.+..+.. .....+|..+..+|...|++..|++.|+...+.+.
T Consensus 639 L~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~---- 711 (1018)
T KOG2002|consen 639 LR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY---- 711 (1018)
T ss_pred Hh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 88 567888999999999999999999999999999863 33566899999999999999999999999988752
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHhhhhhhccc--chhHHHH
Q 007970 464 GVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK--YKKIYVEMHSRMFTSK--HASQARQ 539 (583)
Q Consensus 464 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~~~~~~l~~~~~~~--~~~~~~~ 539 (583)
-.-+..+...|.+++.+.|.+.+|.+.+..... ..|...+ |+. .-++.+...+. ..-+...
T Consensus 712 -----------~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~--a~v~kkla~s~lr~~k~t~e 776 (1018)
T KOG2002|consen 712 -----------KKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNL--ALVLKKLAESILRLEKRTLE 776 (1018)
T ss_pred -----------ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHH--HHHHHHHHHHHHhcccccHH
Confidence 245678999999999999999999999998875 3444333 332 22333322211 1225667
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 007970 540 DRRRERKRAAEAFKFWLGLP 559 (583)
Q Consensus 540 ~~~~~~~~~~~a~~~~~~~~ 559 (583)
++....+.+++|+++|..+.
T Consensus 777 ev~~a~~~le~a~r~F~~ls 796 (1018)
T KOG2002|consen 777 EVLEAVKELEEARRLFTELS 796 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999998874
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-17 Score=170.75 Aligned_cols=405 Identities=12% Similarity=0.090 Sum_probs=297.6
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
+.+..-..-.+.+....|+.++|+++|....... ..+...+..+..++...|++++|.+++++.++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4455556677788889999999999999998633 2455568889999999999999999999999874 5667788889
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH
Q 007970 135 VAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (583)
+.++...|++++|...++++.... +.+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~---------------------------------------------------P~~~~ 118 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA---------------------------------------------------PDKAN 118 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC---------------------------------------------------CCCHH
Confidence 999999999999999999987632 34566
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH------HH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR------IT 288 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~ 288 (583)
+..+..++...|+.++|+..++++.+. .+.+...+..+..++...+..+.|++.++.+.. .|+. ..
T Consensus 119 -~~~la~~l~~~g~~~~Al~~l~~al~~----~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~ 190 (765)
T PRK10049 119 -LLALAYVYKRAGRHWDELRAMTQALPR----APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADA 190 (765)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHH
Confidence 888999999999999999999999985 344566677788888889999999999886664 2221 11
Q ss_pred HHHHHHHHH-----hcCCH---HHHHHHHHHHHhcCCCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 007970 289 YNILLKGYC-----QQLQI---DKAKELLREMADDAKIEPDVV-SY----NILIDGFILIDDSAGALTFFNEMRARGIA- 354 (583)
Q Consensus 289 ~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~~~~~~~~~-~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~- 354 (583)
...++..+. ..+++ ++|++.++.+.+.....|+.. .+ ...+..+...|++++|+..|+.+.+.+.+
T Consensus 191 ~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~ 270 (765)
T PRK10049 191 AAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII 270 (765)
T ss_pred HHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence 222233222 22234 778888888875423333321 11 11133456779999999999999987532
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------
Q 007970 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKENG--------- 423 (583)
Q Consensus 355 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--------- 423 (583)
|+. ....+..++...|++++|+..|+.+.+.....+ .......+..++.+.|++++|.++++.+.+..
T Consensus 271 P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 271 PPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred CHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 332 222356789999999999999999876321111 13456667778899999999999999998652
Q ss_pred --CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHH
Q 007970 424 --FYPN---VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRK 497 (583)
Q Consensus 424 --~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 497 (583)
-.|+ ...+..+...+...|++++|++.++++... .|+ ...+..++.++...|++++
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~------------------~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN------------------APGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHhcCCHHH
Confidence 1123 234556777889999999999999999876 444 5888899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 498 ALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 498 A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
|++.+++... +.|+...+.......+.+. |++++|...++.+
T Consensus 412 A~~~l~~al~--l~Pd~~~l~~~~a~~al~~-----------------~~~~~A~~~~~~l 453 (765)
T PRK10049 412 AENELKKAEV--LEPRNINLEVEQAWTALDL-----------------QEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHHHh--hCCCChHHHHHHHHHHHHh-----------------CCHHHHHHHHHHH
Confidence 9999999985 5677654433323333333 6777777766554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-16 Score=159.03 Aligned_cols=438 Identities=11% Similarity=0.060 Sum_probs=317.4
Q ss_pred HHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCH--HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHH
Q 007970 20 LAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT--AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97 (583)
Q Consensus 20 ~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 97 (583)
..+.|+ ++.|+..|+++.+. .|+. ..+ .++..+...|+.++|+..+++..... ........
T Consensus 44 ~~r~Gd--~~~Al~~L~qaL~~-------------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 44 RARAGD--TAPVLDYLQEESKA-------------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred HHhCCC--HHHHHHHHHHHHhh-------------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 346777 99999999999873 4543 344 88899999999999999999998311 11233333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccC
Q 007970 98 VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177 (583)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (583)
.+...+...|++++|+++|+++.+.. +.++..+..++..+...++.++|++.++.+....++.... ...+..+..
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~----l~layL~~~ 181 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY----MTLSYLNRA 181 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH----HHHHHHHHh
Confidence 34567888899999999999999986 5567888888999999999999999999998877763332 112333334
Q ss_pred CCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHH--
Q 007970 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT-- 255 (583)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-- 255 (583)
.++..+|+..+++++ ...+.+...+..+..++.+.|-...|+++..+-... ..+...-+.
T Consensus 182 ~~~~~~AL~~~ekll--------------~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~----f~~~~~~~l~~ 243 (822)
T PRK14574 182 TDRNYDALQASSEAV--------------RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL----VSAEHYRQLER 243 (822)
T ss_pred cchHHHHHHHHHHHH--------------HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc----cCHHHHHHHHH
Confidence 566656999999988 334566888899999999999999998777665432 333222110
Q ss_pred HHHHHHHHcC------------ChHHHHHHHHHHHhC-CCCCCH-HHH-HH---HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007970 256 TVVSALVKAG------------SMDRARQVLAEMTRI-GVPANR-ITY-NI---LLKGYCQQLQIDKAKELLREMADDAK 317 (583)
Q Consensus 256 ~ll~~~~~~g------------~~~~a~~~~~~~~~~-~~~~~~-~~~-~~---l~~~~~~~~~~~~A~~~~~~~~~~~~ 317 (583)
..+.-..+.+ -.+.|+.-++.+... +-.|.. ..| .. .+-++...+++.++++.|+.+.. .+
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~-~~ 322 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA-EG 322 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh-cC
Confidence 1111111111 234566666665542 111322 222 22 24467788999999999999954 55
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC---
Q 007970 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-----IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV--- 389 (583)
Q Consensus 318 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 389 (583)
.+....+-..+.++|...+++++|+.+|+.+.... ..++......|.-++...+++++|..+++.+.+....
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 45455688889999999999999999999987643 1223444578888999999999999999999873110
Q ss_pred -------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhh
Q 007970 390 -------KVD---IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459 (583)
Q Consensus 390 -------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 459 (583)
.|+ ...+..++..+...|++.+|++.++++... -+-|......+...+...|.+.+|.+.++.+...
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-- 479 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL-- 479 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--
Confidence 122 234455677888999999999999999876 3568889999999999999999999999877754
Q ss_pred hhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007970 460 VKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519 (583)
Q Consensus 460 ~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 519 (583)
.|+. .+....+.++...|++.+|.++.+.+.+ ..|+......
T Consensus 480 ----------------~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 480 ----------------APRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQE 522 (822)
T ss_pred ----------------CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHH
Confidence 6665 7777888899999999999999999875 5677664443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-15 Score=157.67 Aligned_cols=445 Identities=12% Similarity=0.039 Sum_probs=288.0
Q ss_pred hHHHHHH-HHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHC
Q 007970 10 VKAWSTV-VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN-LGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 10 ~~~~~~l-i~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 87 (583)
..+.... ...|.+.++ +++|+..+.++.+. .+.+......+..+|.. .++ +++..+++.
T Consensus 181 ~~vL~L~~~rlY~~l~d--w~~Ai~lL~~L~k~------------~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~---- 241 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQ--WSQADTLYNEARQQ------------NTLSAAERRQWFDVLLAGQLD-DRLLALQSQ---- 241 (987)
T ss_pred cHHHHHHHHHHHHHHhC--HHHHHHHHHHHHhc------------CCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----
Confidence 4333333 666766666 77777777777663 23344445556566665 355 555555442
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC-cchhHH------------------------------HHHHH
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGIT-LCMTTF------------------------------QSLVA 136 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~------------------------------~~l~~ 136 (583)
.++-+...+..+...+.+.|+.++|.++++++...... |...++ ..++.
T Consensus 242 ~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (987)
T PRK09782 242 GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLP 321 (987)
T ss_pred hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHH
Confidence 22245666667777777777777777766665432111 111111 11234
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHH---------------------------HHHHHhhhhccccccCCCCCCCcHHHHH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDV---------------------------CKIIRELDLEDYSSENEGDDDDDDEVFE 189 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 189 (583)
.+.+.++++.++++.. .....+-. +.....+..........|+..+|.++|+
T Consensus 322 ~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~ 400 (987)
T PRK09782 322 VLLKEGQYDAAQKLLA-TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLL 400 (987)
T ss_pred HHHhccHHHHHHHHhc-CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4444555554444422 11000000 0000011111222335677788888888
Q ss_pred hhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC---hhHHHHH----------------------HHHHHhccc
Q 007970 190 KLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR---VSDTVRM----------------------LGAMRRQED 244 (583)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~~~~~~~ 244 (583)
...+.. ..-..+....+.++..|.+.+. ...+..+ +......-
T Consensus 401 ~~~~~~-----------~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al- 468 (987)
T PRK09782 401 QRYPFQ-----------GDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL- 468 (987)
T ss_pred HhcCCC-----------cccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc-
Confidence 776421 1112345555677787777766 2222222 22222211
Q ss_pred CCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH
Q 007970 245 NASHP--DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV 322 (583)
Q Consensus 245 ~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 322 (583)
...++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++... +|+.
T Consensus 469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~---~p~~ 542 (987)
T PRK09782 469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH---DMSN 542 (987)
T ss_pred ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc---CCCc
Confidence 01233 56677777777766 88999999888887653 56555445566667899999999999998543 4555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 402 (583)
..+..+..++.+.|+.++|...+++..+.. +.+...+..+.......|++++|...+++..+. .|+...|..+..+
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~ 618 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATI 618 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 566777788899999999999999998864 333333444444455669999999999999863 4678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HH
Q 007970 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-EL 481 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~ 481 (583)
+.+.|++++|+..+++..... +.+...+..+..++...|++++|+..++++.+. .|+. ..
T Consensus 619 l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l------------------~P~~~~a 679 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG------------------LPDDPAL 679 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------------------CCCCHHH
Confidence 999999999999999999863 446677888888999999999999999999976 6654 88
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
+..+..++...|++++|+..+++..+ +.|+....
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i 713 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVID--DIDNQALI 713 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchh
Confidence 89999999999999999999999985 55665433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.9e-15 Score=148.30 Aligned_cols=444 Identities=14% Similarity=0.084 Sum_probs=310.6
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcch--hH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP--DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM--TT 130 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 130 (583)
+-+++..+.|.+.|.-.|++..++.+...+......- -...|-.+.++|-..|+++.|...|-+..+.. ++. ..
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~ 344 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLP 344 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCcccc
Confidence 4467788889999999999999999998887753211 13346678888999999999999987777654 333 34
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCC----CCCCCcHHHHHhhcCCCCCCCCCCCCCC
Q 007970 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE----GDDDDDDEVFEKLLPNSINPSSEPPLLP 206 (583)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 206 (583)
+..|.+.+.+.|+++.+...|+.+....|+.......+. ..|... -..+.|..+..+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG---~Lya~~~~~~~~~d~a~~~l~K~~-------------- 407 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILG---CLYAHSAKKQEKRDKASNVLGKVL-------------- 407 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHH---hHHHhhhhhhHHHHHHHHHHHHHH--------------
Confidence 456788899999999999999998887777666554443 333333 23345555555554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-ccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CC
Q 007970 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ-EDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI---GV 282 (583)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~ 282 (583)
...+.|...|-.+...+....-+.. +.+|..+... ...+..+.+...|.+.......|+++.|...|...... ..
T Consensus 408 ~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 408 EQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred hcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 2235678888888888776665554 6666554421 00123366788899999999999999999999888754 11
Q ss_pred C------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 007970 283 P------ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV-SYNILIDGFILIDDSAGALTFFNEMRARGIAP 355 (583)
Q Consensus 283 ~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 355 (583)
. ++..+--.+..++-..++.+.|.+.|..+++. .|+-+ .|..+.......+...+|...+++..... ..
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~ 562 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS 562 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence 2 22223344666777788999999999999875 45533 34444333334577788999998887753 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCC
Q 007970 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR------------MGLVEEAKRIIERMKENG 423 (583)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~g 423 (583)
++..+..+...+.+...+..|.+-|..+.+.....+|..+.-+|...|.+ .+..++|+++|.+.++.
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~- 641 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN- 641 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-
Confidence 55556666667777788888888777766654445677777677665543 24578899999999886
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007970 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 503 (583)
.+-|...-|-+.-+++..|++.+|..+|.+..+.. .-...+|..+..+|...|+|-.|+++|+
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-----------------~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-----------------SDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-----------------hhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 34578888888889999999999999999998862 3344678889999999999999999999
Q ss_pred HHHH-cCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 504 CMEE-HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 504 ~~~~-~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
.... .....+... +..|+|+++.. |.+.+|.+.+...
T Consensus 705 ~~lkkf~~~~~~~v-----l~~Lara~y~~-------------~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEV-----LHYLARAWYEA-------------GKLQEAKEALLKA 742 (1018)
T ss_pred HHHHHhcccCCHHH-----HHHHHHHHHHh-------------hhHHHHHHHHHHH
Confidence 9754 333333433 33445543333 7888888776443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-14 Score=145.79 Aligned_cols=402 Identities=14% Similarity=0.109 Sum_probs=275.2
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV--LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
.+.+.-.-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.... .+........+
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llal 108 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASA 108 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHH
Confidence 34444445556679999999999999999864 443 234 8888888999999999999998832 12333444445
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH
Q 007970 135 VAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (583)
...+...|++++|.++|+++.+.. +.+..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d---------------------------------------------------P~n~~ 137 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD---------------------------------------------------PTNPD 137 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC---------------------------------------------------CCCHH
Confidence 678999999999999999998743 34567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
.+..++..+...++.++|++.+..+... .|+...+..++..+...++..+|++.++++.+.. |.+...+..++.
T Consensus 138 ~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~ 211 (822)
T PRK14574 138 LISGMIMTQADAGRGGVVLKQATELAER-----DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLE 211 (822)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhccc-----CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 7778889999999999999999998874 5565556555445545666666999999999875 567888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHH---------hcCCH---HHHHHHHHHHHHC-CCCCC-HH
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSY--NILIDGFI---------LIDDS---AGALTFFNEMRAR-GIAPT-KI 358 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~---------~~~~~---~~a~~~~~~m~~~-~~~p~-~~ 358 (583)
++.+.|-...|.++..+-.. -+.+....+ ...+.-.+ ..+++ +.|+.-++.+... +..|. ..
T Consensus 212 ~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~ 289 (822)
T PRK14574 212 ILQRNRIVEPALRLAKENPN--LVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQA 289 (822)
T ss_pred HHHHcCCcHHHHHHHHhCcc--ccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccch
Confidence 99999999999988765431 112221111 00000111 11222 3455555555542 12232 22
Q ss_pred HH----HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHH
Q 007970 359 SY----TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG-----FYPNVA 429 (583)
Q Consensus 359 ~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~ 429 (583)
.| .-.+-++...+++.++++.|+.+... +.+....+-..+..+|...+++++|..+|..+.... ..++..
T Consensus 290 ~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~ 368 (822)
T PRK14574 290 DYQRARIDRLGALLVRHQTADLIKEYEAMEAE-GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLL 368 (822)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchH
Confidence 22 23344678889999999999999864 555456678899999999999999999999997542 233444
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
....|..++...+++++|..+++.+.+... - .+.........-.||- ..+..++..+...|++.+|++.++++..
T Consensus 369 ~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p-~--~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~- 444 (822)
T PRK14574 369 DADDLYYSLNESEQLDKAYQFAVNYSEQTP-Y--QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS- 444 (822)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCC-c--EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 467889999999999999999999987421 0 0110010111224554 4556667888999999999999999975
Q ss_pred CCCCCHHHHHHHHHHhhhh
Q 007970 509 GIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 509 ~~~p~~~~~~~~~~~~l~~ 527 (583)
..|...-+.....+++.+
T Consensus 445 -~aP~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 445 -TAPANQNLRIALASIYLA 462 (822)
T ss_pred -hCCCCHHHHHHHHHHHHh
Confidence 345544433333555444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-13 Score=127.84 Aligned_cols=480 Identities=14% Similarity=0.122 Sum_probs=298.6
Q ss_pred hhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 28 PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107 (583)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 107 (583)
.++|.-++.+..+. ++.+...|. ++++..-++.|.++++...+. +..+...|.+....=-.+|
T Consensus 392 ~~darilL~rAvec------------cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ng 454 (913)
T KOG0495|consen 392 PEDARILLERAVEC------------CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANG 454 (913)
T ss_pred hHHHHHHHHHHHHh------------ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcC
Confidence 44466677776664 444555554 444556667777777777663 4456666766666666677
Q ss_pred ChhHHHHHHHH----HHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCC
Q 007970 108 RKHLLVFVLER----ILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183 (583)
Q Consensus 108 ~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (583)
+.+....+..+ +...|+..+...|..=...|-..|..-.+..+...+...+.+..+....+.-.+....+.+.++-
T Consensus 455 n~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~c 534 (913)
T KOG0495|consen 455 NVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIEC 534 (913)
T ss_pred CHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHH
Confidence 77776666543 33456666666666666666666766666666666655544444444444444445556666666
Q ss_pred cHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH
Q 007970 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK 263 (583)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 263 (583)
|+.+|...+ +.++.+...|...+..--..|..++...+|++.... .+-....|.....-+-.
T Consensus 535 arAVya~al--------------qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~----~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 535 ARAVYAHAL--------------QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ----CPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHHHHHHHH--------------hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh----CCcchhHHHHHHHHHHh
Confidence 777777666 445666677777776666677777777777777664 44445556656666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343 (583)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 343 (583)
.|++..|..++..+.+.. +.+..+|-.-+..-..+..++.|..+|.+... ..|+...|.--+..---.+..++|.+
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 677777777777777654 44666677777777777777777777776633 24555555555555555667777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007970 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 423 (583)
++++..+. .+--...|..+.+.+-+.++.+.|...|..-.+ ..+..+..|-.|...--+.|.+-.|..++++..-.+
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 77766664 232345566666677777777777776665554 345555666666666666677777777777766543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhcc----ccCCC-------CCC--CCCCCCHHHHHHHHHHHH
Q 007970 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEG----VNADS-------DLP--PPLKPDEELLDALADICV 490 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~-------~~~--~~~~p~~~~~~~l~~~~~ 490 (583)
+-+...|...++.=.+.|..+.|..+..++.+.+...+.- +.... .+. .....|..++..+...+.
T Consensus 750 -Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 750 -PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred -CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 3356666667776667777777776666666654221100 00000 000 022556777888888899
Q ss_pred hhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC-CCCCC-Ccccc
Q 007970 491 RAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL-PNSYY-GSEWR 568 (583)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~-~~~~~ 568 (583)
...+++.|.+.|..... +.||....=+.+.....+. |.-++-.+++.+- ...|. |..|.
T Consensus 829 ~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~h-----------------G~eed~kev~~~c~~~EP~hG~~W~ 889 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRH-----------------GTEEDQKEVLKKCETAEPTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHh-----------------CCHHHHHHHHHHHhccCCCCCcHHH
Confidence 99999999999999984 5677655444456666665 6556666666555 33333 66665
Q ss_pred c
Q 007970 569 L 569 (583)
Q Consensus 569 ~ 569 (583)
.
T Consensus 890 a 890 (913)
T KOG0495|consen 890 A 890 (913)
T ss_pred H
Confidence 3
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-13 Score=131.60 Aligned_cols=470 Identities=13% Similarity=0.105 Sum_probs=273.0
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
....-.....+...|+ .++|..++.++++. .|.+...|.+|..+|-..|+.+++...+-.+-..+.
T Consensus 139 l~~ll~eAN~lfarg~--~eeA~~i~~EvIkq------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p 204 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGD--LEEAEEILMEVIKQ------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP 204 (895)
T ss_pred HHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 3333333344444477 99999999999885 566788999999999999999999988877766543
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHH--HHHHh
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC--KIIRE 167 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 167 (583)
.|...|..+.....+.|++.+|.-+|.+.++.. +++...+-.-...|-+.|+...|..-|..+....|.+. .....
T Consensus 205 -~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~ 282 (895)
T KOG2076|consen 205 -KDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDL 282 (895)
T ss_pred -CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHH
Confidence 466889999998899999999999999999986 66666666678889999999999999998887655111 11122
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhccc---
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED--- 244 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--- 244 (583)
....+..+...+..+.|.+.++..+.. ..-..+...++.++..|.+...++.|............
T Consensus 283 i~~~~~~~~~~~~~e~a~~~le~~~s~------------~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 283 IRRVAHYFITHNERERAAKALEGALSK------------EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhh------------ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCC
Confidence 222223333344446666666666510 12334455677777777777777777777766665210
Q ss_pred ---------------------CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC
Q 007970 245 ---------------------NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG--VPANRITYNILLKGYCQQLQ 301 (583)
Q Consensus 245 ---------------------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 301 (583)
....++...+ -+.-++.+....+....+...+.+.. +.-+...|.-+..+|...|+
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~ 429 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK 429 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc
Confidence 0111111111 11222233344444444444444444 23345566667777777777
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007970 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381 (583)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 381 (583)
+.+|+.+|..+....+ ..+...|-.+..+|...|.++.|.+.|+...... +-+...-..|...+.+.|++++|.+.+.
T Consensus 430 ~~~Al~~l~~i~~~~~-~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 430 YKEALRLLSPITNREG-YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHHHHHHHHHHhcCcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 7777777777755322 2345667777777777777777777777776652 2233444455556667777777777776
Q ss_pred HHhc-------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 382 EMLR-------DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG-----FYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 382 ~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.+.. .....|+..........+.+.|+.++=+.+..+|+... +.|+..--.....+-...+...+-..
T Consensus 508 ~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~ 587 (895)
T KOG2076|consen 508 QIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLK 587 (895)
T ss_pred cccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHH
Confidence 6432 11234444444555566666777666555555554321 11111110111111001111111111
Q ss_pred HHHHHHHHhhh---hhccccC----CCCCCCCCCCCH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Q 007970 450 LWKEIKERCEV---KKEGVNA----DSDLPPPLKPDE--ELLDALADICVRAAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 450 ~~~~~~~~~~~---~~~~~~~----~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 510 (583)
....+...... ...+... .....+++..+. ..+.-++.++.+.+++++|+.+...+.+...
T Consensus 588 ~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~ 657 (895)
T KOG2076|consen 588 QIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI 657 (895)
T ss_pred HHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 11111111000 0000000 000111333333 4667778899999999999999999976433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-12 Score=123.75 Aligned_cols=473 Identities=11% Similarity=0.072 Sum_probs=353.3
Q ss_pred hhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 28 PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107 (583)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 107 (583)
...-.+++++.++. +|.++..|-..+ ...+.++|.-++....+.- ..+.. |.-++++..
T Consensus 362 ~~~K~RVlRKALe~------------iP~sv~LWKaAV----elE~~~darilL~rAvecc-p~s~d----LwlAlarLe 420 (913)
T KOG0495|consen 362 TKNKKRVLRKALEH------------IPRSVRLWKAAV----ELEEPEDARILLERAVECC-PQSMD----LWLALARLE 420 (913)
T ss_pred HHHHHHHHHHHHHh------------CCchHHHHHHHH----hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHH
Confidence 34445677777775 666777887554 4567777999999998742 22333 344567777
Q ss_pred ChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhh------HHHHHHHHhhhhccccccCCCCC
Q 007970 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR------RDVCKIIRELDLEDYSSENEGDD 181 (583)
Q Consensus 108 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 181 (583)
-++.|..++....+. ++.+..+|.+-...--..|+.+...+++++-...- .+...|+.. +......|..
T Consensus 421 tYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e----Ae~~e~agsv 495 (913)
T KOG0495|consen 421 TYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE----AEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH----HHHHhhcCCh
Confidence 899999999999886 68899999998888888999999999887543321 122233322 2233455777
Q ss_pred CCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 007970 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261 (583)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (583)
-.+..+...++.-++.- ..-..+|..-...|.+.+.++-|..+|....+. .+-+...|......-
T Consensus 496 ~TcQAIi~avigigvEe-----------ed~~~tw~~da~~~~k~~~~~carAVya~alqv----fp~k~slWlra~~~e 560 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEE-----------EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV----FPCKKSLWLRAAMFE 560 (913)
T ss_pred hhHHHHHHHHHhhcccc-----------chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh----ccchhHHHHHHHHHH
Confidence 77788888776333221 233678999999999999999999999999885 566778888888877
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
-..|..+....+|+.+... ++-....|......+-..|+...|..++..+.+.. +.+...|..-+..-..+.+++.|
T Consensus 561 k~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHH
Confidence 8889999999999999986 35667788888888999999999999999998643 34677888888888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 342 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
..+|.+.... .|+...|.--+......++.++|.+++++..+ .++.-...|..+.+.+-+.++.+.|.+.|..-.+
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 9999998874 67888888777777788999999999999998 4555567899999999999999999999988776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHH
Q 007970 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALE 500 (583)
Q Consensus 422 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 500 (583)
. ++-.+..|..|...=-+.|..-+|..++++..-+ .|+ ...|...|++=.+.|..+.|..
T Consensus 714 ~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk------------------NPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 714 K-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK------------------NPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred c-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc------------------CCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 4 3444556777777777889999999999999876 555 4889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHH------------HHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC-CCCC-CCcc
Q 007970 501 IVACMEEHGIPPNKTKYKKI------------YVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL-PNSY-YGSE 566 (583)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~-~~~~ 566 (583)
++.+.++. .+.+-..|..- .++.+.++-.-+|........--...++++|.++|.+. .-.| +|.+
T Consensus 775 lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~ 853 (913)
T KOG0495|consen 775 LMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA 853 (913)
T ss_pred HHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence 98887641 22222233222 24555555444433333333334456778888888665 2233 3666
Q ss_pred cc
Q 007970 567 WR 568 (583)
Q Consensus 567 ~~ 568 (583)
|-
T Consensus 854 wa 855 (913)
T KOG0495|consen 854 WA 855 (913)
T ss_pred HH
Confidence 63
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-14 Score=130.23 Aligned_cols=456 Identities=12% Similarity=0.126 Sum_probs=254.2
Q ss_pred HHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHH-HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC---
Q 007970 17 VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAA-YNAVLNACANLGKPKKFLQLFDQMHEFGAKPD--- 92 (583)
Q Consensus 17 i~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--- 92 (583)
.+-|..... +.+|+..|+.+.+. ..-|+... --.+.+.+.+..++.+|+++|+.....-+..+
T Consensus 208 aqqy~~ndm--~~ealntyeiivkn-----------kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ 274 (840)
T KOG2003|consen 208 AQQYEANDM--TAEALNTYEIIVKN-----------KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDM 274 (840)
T ss_pred HHHhhhhHH--HHHHhhhhhhhhcc-----------cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhh
Confidence 344444444 66777777666552 12222221 12344566677777777777777665321111
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHH---------
Q 007970 93 -VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVC--------- 162 (583)
Q Consensus 93 -~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 162 (583)
....+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|........
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~d 352 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKD 352 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcC
Confidence 223444444566777777777777777665 35655555556666667777777777777754211000
Q ss_pred -----HHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH-------------HH--------
Q 007970 163 -----KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR-------------IY-------- 216 (583)
Q Consensus 163 -----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~-------- 216 (583)
-....+.....-.....+-..|.+..-... .++...+.|+-. .+
T Consensus 353 dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~----------kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 353 DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAA----------KIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHH----------HHhccccccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 000000000000000011111111111100 000000011100 00
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHH-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA-LVK-AGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
-.-..-|.+.|+++.|.++++-+.++. .+.-...-+.|-.. |.+ -.++..|.+.-+..+... .-+....+.-..
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kd---nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn 498 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKD---NKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGN 498 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhcc---chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCc
Confidence 011224455666666666665554431 11111111111111 111 123444444444443322 222222222222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 374 (583)
.....|++++|.+.|++.+.. . ...+...-.+.-.+...|+.++|++.|-++..- +..+..++..+...|....++.
T Consensus 499 ~~f~ngd~dka~~~ykeal~n-d-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALNN-D-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred eeeecCcHHHHHHHHHHHHcC-c-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHH
Confidence 334568899999999888742 1 111222222333466788999999999887664 3457788888888898889999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
+|++++..... -++.|+...+-|...|-+.|+-..|.+..-+--.. ++-+..+...|...|....-.++++.+|+++
T Consensus 576 qaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 576 QAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999877755 67788888999999999999999998877665443 5567888888888888888899999999887
Q ss_pred HHHhhhhhccccCCCCCCCCCCCCHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Q 007970 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALAD-ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 527 (583)
.- +.|+..-|..++- ++.+.|++..|..+++...+ .+ |........++.+.+.
T Consensus 653 al------------------iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kf-pedldclkflvri~~d 706 (840)
T KOG2003|consen 653 AL------------------IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KF-PEDLDCLKFLVRIAGD 706 (840)
T ss_pred Hh------------------cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hC-ccchHHHHHHHHHhcc
Confidence 63 5899988887775 55678999999999998864 23 4333333333554444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-14 Score=127.96 Aligned_cols=405 Identities=13% Similarity=0.083 Sum_probs=255.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHH-HHHHHHHcCCChHHHHHHHHHHHhhhHHHHH--HHHhhhhccccc
Q 007970 99 MIKLCARASRKHLLVFVLERILEMGITLCMTTFQ-SLVAAYVGFGDLEIAETIVQAMREGRRDVCK--IIRELDLEDYSS 175 (583)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 175 (583)
|..-|..+....+|+..|+-+++...-|+...+. .+.+.+.+..++.+|++.++.....-|.+.. .+..+...+..+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 4444555566677777777777766666654433 3556677777778888777766654443322 334455566777
Q ss_pred cCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhccc---------CC
Q 007970 176 ENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED---------NA 246 (583)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------~~ 246 (583)
.+.|.++.|+..|+.++. ..|+..+-..|+-++..-|+-+...+.|.+|..... ..
T Consensus 287 iq~gqy~dainsfdh~m~---------------~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCME---------------EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred EecccchhhHhhHHHHHH---------------hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 778888888888887762 246666656666666677777777777777765420 01
Q ss_pred CCCCHHHHHHHH-----HHHHHcC--ChHHHHHHHHHHHhCCCCCCHH-----HH----------------HHHHHHHHh
Q 007970 247 SHPDHVTYTTVV-----SALVKAG--SMDRARQVLAEMTRIGVPANRI-----TY----------------NILLKGYCQ 298 (583)
Q Consensus 247 ~~~~~~~~~~ll-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-----~~----------------~~l~~~~~~ 298 (583)
..|+....+..| ...-+.+ +.++++-.-..++.--+.|+-. +. ..-...|.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 112222222111 1111111 1112211111111111111100 00 001223556
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHH------------------------------HHH-----HHHHHHhcCCHHHHHH
Q 007970 299 QLQIDKAKELLREMADDAKIEPDVVS------------------------------YNI-----LIDGFILIDDSAGALT 343 (583)
Q Consensus 299 ~~~~~~A~~~~~~~~~~~~~~~~~~~------------------------------~~~-----li~~~~~~~~~~~a~~ 343 (583)
.|+++.|.++++-+.++.....+... |+. -.......|++++|.+
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 66666666666555332111111100 111 0111123688999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007970 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 423 (583)
.|++.....-.-....|+. .-.+-..|+.++|++.|-++.. -+..+......+...|-...+...|++++-+....
T Consensus 512 ~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 9999876532222222322 2245678999999999988754 33456777778888899999999999999888775
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007970 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVA 503 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 503 (583)
++.|+..+..|...|-+.|+..+|.+.+-.--.. ++-+..+..-|..-|....-+++|+.+|+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyry-----------------fp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-----------------FPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-----------------cCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6778899999999999999999999887655443 36677888889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 504 CMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 504 ~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
+.. -+.|+..-|..++..+++|. |.+.+|+++++.+
T Consensus 651 kaa--liqp~~~kwqlmiasc~rrs-----------------gnyqka~d~yk~~ 686 (840)
T KOG2003|consen 651 KAA--LIQPNQSKWQLMIASCFRRS-----------------GNYQKAFDLYKDI 686 (840)
T ss_pred HHH--hcCccHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHH
Confidence 985 37999999999999999998 9999999998776
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-12 Score=115.95 Aligned_cols=370 Identities=11% Similarity=0.135 Sum_probs=252.7
Q ss_pred CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 7 LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
+-+..+|..+|.++|+... .+.|..++.+..+. ....+..+||.+|.+-+-... .+++.+|.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~--~ERA~~L~kE~~~~-----------k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMis 266 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSS--LERARELYKEHRAA-----------KGKVYREAFNGLIGASSYSVG----KKLVAEMIS 266 (625)
T ss_pred CCCchhHHHHHHHHHHHHh--HHHHHHHHHHHHHh-----------hheeeHHhhhhhhhHHHhhcc----HHHHHHHHH
Confidence 3467799999999999977 99999999887763 356789999999988654433 889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHH----HHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHH-HHHHHHHHHhhhHHH
Q 007970 87 FGAKPDVLTYNVMIKLCARASRKHLL----VFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI-AETIVQAMREGRRDV 161 (583)
Q Consensus 87 ~~~~~~~~~~~~li~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~ 161 (583)
..+.||..|+|+++.+.++.|+++.| ++++.+|++.|+.|...+|..+|..+++.++..+ |...+..+...
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~---- 342 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS---- 342 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh----
Confidence 99999999999999999999988764 5788899999999999999999999999888765 22222222210
Q ss_pred HHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007970 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241 (583)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (583)
+.+. .+.-..+.+..-|...+..|....+.+-|.++...+..
T Consensus 343 --------ltGK------------------------------~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~t 384 (625)
T KOG4422|consen 343 --------LTGK------------------------------TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKT 384 (625)
T ss_pred --------hccC------------------------------cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHc
Confidence 0000 00111134566777888888899999999888777654
Q ss_pred cccCC-CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007970 242 QEDNA-SHPD---HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK 317 (583)
Q Consensus 242 ~~~~~-~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 317 (583)
..... +.|+ ..-|..+....+.....+.-...|+.|+-.-+-|+..+...++++..-.+.++-.-+++..+.. .|
T Consensus 385 g~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~g 463 (625)
T KOG4422|consen 385 GDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YG 463 (625)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hh
Confidence 32111 2222 2345667777788888889999999998877778888888888888888888888888877743 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHH-HHHHHhcCCCCCCCH
Q 007970 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI---SYTTLMKAFALSSQPKLANK-VFDEMLRDPRVKVDI 393 (583)
Q Consensus 318 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~ 393 (583)
.+++. +--++++..|......|+.. -+.....-|+. ++.++.+ .-.++.+ .....
T Consensus 464 -----ht~r~-----------~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~---~~~~~ 522 (625)
T KOG4422|consen 464 -----HTFRS-----------DLREEILMLLARDKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRA---QDWPA 522 (625)
T ss_pred -----hhhhH-----------HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHh---ccCCh
Confidence 11211 22234444555544444322 23333222211 2222222 2222322 23455
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGF----YPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+.+...+.+.|+.++|.++|..+.+.+- .|.......++..-...+.+..|+..++-+...
T Consensus 523 t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 523 TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 5677777888999999999999999865442 233344445666667778888888888888654
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-13 Score=122.43 Aligned_cols=326 Identities=17% Similarity=0.253 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH--HHcCCChHHHH-HHHHHHHhhhHHHHHHHHhhh
Q 007970 93 VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA--YVGFGDLEIAE-TIVQAMREGRRDVCKIIRELD 169 (583)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~~ 169 (583)
+.+=|.|++ +...|.+.++.-+|+.|...|++.++.+-..|+.. |....++--|+ +-|-.|...+.+....
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~s----- 189 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSS----- 189 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccc-----
Confidence 445566666 45678889999999999999988887776666543 33333433222 2222333222111100
Q ss_pred hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCC
Q 007970 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249 (583)
Q Consensus 170 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 249 (583)
-+.|.+ |. ++-+.. +.+..++..||.+.|+--..+.|.+++++.... ..+.
T Consensus 190 ------WK~G~v--Ad-L~~E~~-----------------PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~---k~kv 240 (625)
T KOG4422|consen 190 ------WKSGAV--AD-LLFETL-----------------PKTDETVSIMIAGLCKFSSLERARELYKEHRAA---KGKV 240 (625)
T ss_pred ------cccccH--HH-HHHhhc-----------------CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh---hhee
Confidence 011221 22 333333 578899999999999999999999999998876 3778
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHHHHhcCCCCCCHHHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK----ELLREMADDAKIEPDVVSY 325 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~----~~~~~~~~~~~~~~~~~~~ 325 (583)
+..+||.+|.+..-.. ..+++.+|....+.||..|+|+++++..+.|+++.|. +++.+| ++-|+.|...+|
T Consensus 241 ~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~Em-KeiGVePsLsSy 315 (625)
T KOG4422|consen 241 YREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEM-KEIGVEPSLSSY 315 (625)
T ss_pred eHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHH-HHhCCCcchhhH
Confidence 8999999998765433 3789999999999999999999999999999987665 556666 558999999999
Q ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCCC-
Q 007970 326 NILIDGFILIDDSAG-ALTFFNEMRA----RGIA----PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR---VKVD- 392 (583)
Q Consensus 326 ~~li~~~~~~~~~~~-a~~~~~~m~~----~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~- 392 (583)
..+|..+.+-++..+ +..++.++.. ...+ -+...|...+..|.+..+.+.|.++..-+....+ +.|+
T Consensus 316 h~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~ 395 (625)
T KOG4422|consen 316 HLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ 395 (625)
T ss_pred HHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH
Confidence 999999998888754 4444444433 2222 2456678888899999999999998877655322 1222
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 393 --IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 393 --~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
..-|..+..+.|+....+.-...|+.|.-.-+-|+..+...++++..-.|.++-.-++|..++..+
T Consensus 396 ~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 396 HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 234667788888999999999999999877788999999999999999999988888888877653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-12 Score=129.07 Aligned_cols=270 Identities=17% Similarity=0.189 Sum_probs=143.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----H
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR----I 287 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~ 287 (583)
|..-|..+.....+.|.++.|.-.|.+..+. .+++...+---...|-+.|+...|...|.++.....+.+. .
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~----~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d 281 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQA----NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIED 281 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHH
Confidence 3444555555555555555555555555543 2333333333344444555555555555555543211111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR---------------- 351 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------- 351 (583)
..-..++.+...++-+.|.+.++......+-..+...++.++..|.+...++.|......+...
T Consensus 282 ~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~ 361 (895)
T KOG2076|consen 282 LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRR 361 (895)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcc
Confidence 1112233444444445555555544442222333344445555555555555555544444331
Q ss_pred -----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007970 352 -----------GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR--VKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418 (583)
Q Consensus 352 -----------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 418 (583)
+..++...+ -++-++.+....+....+...+.+. . ..-+...|.-+..+|.+.|++.+|+++|..
T Consensus 362 ~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 362 EEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred ccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 112222221 1122233334444444444444432 2 233456677777888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHH
Q 007970 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRK 497 (583)
Q Consensus 419 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 497 (583)
+...-..-+...|-.+..+|...|.+++|++.|++++.. .|+. .....|...+.+.|+.++
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~------------------~p~~~D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL------------------APDNLDARITLASLYQQLGNHEK 501 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc------------------CCCchhhhhhHHHHHHhcCCHHH
Confidence 776533345667777788888888888888888887764 5554 666677777778888888
Q ss_pred HHHHHHHH
Q 007970 498 ALEIVACM 505 (583)
Q Consensus 498 A~~~~~~~ 505 (583)
|.+.+..+
T Consensus 502 alEtL~~~ 509 (895)
T KOG2076|consen 502 ALETLEQI 509 (895)
T ss_pred HHHHHhcc
Confidence 88887775
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-10 Score=104.73 Aligned_cols=485 Identities=11% Similarity=0.071 Sum_probs=334.5
Q ss_pred HHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 007970 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 11 ~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 90 (583)
..|-...+-=-..++ +..|..+|+..+.- -..+...|-.-+.+=.++.....|..+|+.....-+.
T Consensus 74 ~~WikYaqwEesq~e--~~RARSv~ERALdv------------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKE--IQRARSVFERALDV------------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHhHHH--HHHHHHHHHHHHhc------------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 344444443344455 88888888888762 2345667777788888888888888888888764322
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 007970 91 PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170 (583)
Q Consensus 91 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 170 (583)
.| ..|--.+.+=-..|+...|.++|++-.+- .|+...|.+.|+.-.+...++.|..+++...--.|++..|+.-.
T Consensus 140 Vd-qlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikya-- 214 (677)
T KOG1915|consen 140 VD-QLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYA-- 214 (677)
T ss_pred HH-HHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHH--
Confidence 22 23444444455678888888888887774 68888888888888888888888888888877667776665332
Q ss_pred ccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC
Q 007970 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD 250 (583)
Q Consensus 171 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 250 (583)
.--.+.|....+..+|+..+.... ...-+...+.++...=.++..++.|.-+|+-.... ++.+
T Consensus 215 --rFE~k~g~~~~aR~VyerAie~~~-----------~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~----~pk~ 277 (677)
T KOG1915|consen 215 --RFEEKHGNVALARSVYERAIEFLG-----------DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH----IPKG 277 (677)
T ss_pred --HHHHhcCcHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCcc
Confidence 223356777778888887652100 00123345666666666788899999999988886 4433
Q ss_pred --HHHHHHHHHHHHHcCChHHHHHH--------HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 007970 251 --HVTYTTVVSALVKAGSMDRARQV--------LAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP 320 (583)
Q Consensus 251 --~~~~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 320 (583)
...|......=-+-|+....... ++.+++.+ +.|-.+|--.++.-...|+.+...++|++.+ .+++|
T Consensus 278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAI--anvpp 354 (677)
T KOG1915|consen 278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAI--ANVPP 354 (677)
T ss_pred cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHH--ccCCc
Confidence 34454444444445654433332 34444443 6677888888888888999999999999998 45556
Q ss_pred CHH--HHHHHHH-----HH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHhcC
Q 007970 321 DVV--SYNILID-----GF---ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA----FALSSQPKLANKVFDEMLRD 386 (583)
Q Consensus 321 ~~~--~~~~li~-----~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~ 386 (583)
-.. .|...|. ++ ....+.+.+.++|+...+. ++-..+||.-+--. ..++.+...|.+++...+
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-- 431 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-- 431 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--
Confidence 332 2222221 11 3578899999999999884 45456666544333 446788999999998886
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhcccc
Q 007970 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466 (583)
Q Consensus 387 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (583)
|.-|...++...|..-.+.+++|.+..++++.++.+ +-+..+|......=...|+.+.|..+|.-+++..
T Consensus 432 -G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp-------- 501 (677)
T KOG1915|consen 432 -GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQP-------- 501 (677)
T ss_pred -ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc--------
Confidence 567889999999999999999999999999999864 3467788888887788999999999999998752
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchh--------HHH
Q 007970 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS--------QAR 538 (583)
Q Consensus 467 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~--------~~~ 538 (583)
.+......+.+.|+.=...|.++.|..+++.+++. .+-...|.+. ...-..+ +.+.. ...
T Consensus 502 -------~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisF-A~fe~s~--~~~~~~~~~~~~e~~~ 569 (677)
T KOG1915|consen 502 -------ALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISF-AKFEASA--SEGQEDEDLAELEITD 569 (677)
T ss_pred -------ccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhH-HHHhccc--cccccccchhhhhcch
Confidence 23334567788888888999999999999999863 2333355544 3322211 01000 112
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 007970 539 QDRRRERKRAAEAFKFWLGLP 559 (583)
Q Consensus 539 ~~~~~~~~~~~~a~~~~~~~~ 559 (583)
..+.++|.-+++|..+++...
T Consensus 570 ~~~~~AR~iferAn~~~k~~~ 590 (677)
T KOG1915|consen 570 ENIKRARKIFERANTYLKEST 590 (677)
T ss_pred hHHHHHHHHHHHHHHHHHhcC
Confidence 367778888899988887664
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-11 Score=112.87 Aligned_cols=371 Identities=11% Similarity=0.085 Sum_probs=246.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 007970 92 DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171 (583)
Q Consensus 92 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 171 (583)
+...|--..+-=..++++..|..+|++.+..+ ..+...|-.-+.+-.+...+..|..+++.....-|.+..++..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~-- 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI-- 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH--
Confidence 44445444455556788899999999999876 567888888888899999999999999999888777777665543
Q ss_pred cccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCH
Q 007970 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251 (583)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 251 (583)
+.-...|+...|.++|++.+ ...|+..+|++.|..=.+-+.++.|..+++...- +.|+.
T Consensus 149 -ymEE~LgNi~gaRqiferW~---------------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----~HP~v 207 (677)
T KOG1915|consen 149 -YMEEMLGNIAGARQIFERWM---------------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----VHPKV 207 (677)
T ss_pred -HHHHHhcccHHHHHHHHHHH---------------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----ecccH
Confidence 23345799999999999987 4589999999999999999999999999999985 67999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLAEMTRI-GV-PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 329 (583)
.+|.--...=.+.|....+..+|+.+.+. |- ..+...+.++...-.++..++.|.-+|+-.++.-........|..+.
T Consensus 208 ~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 99999888888999999999999988753 21 12334555555555567788888888887765322112234454444
Q ss_pred HHHHhcCCHHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH--HHHHHH
Q 007970 330 DGFILIDDSAGALTF--------FNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI--VAWNML 399 (583)
Q Consensus 330 ~~~~~~~~~~~a~~~--------~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 399 (583)
..--+-|+.....+. |+.+...+ +-|..+|-..++.....|+.+...++|++.+. +++|-. ..|...
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RY 364 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRY 364 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHH
Confidence 433344554433332 33334332 34555666666666666777777777777765 455432 122222
Q ss_pred HHH--------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHhHHHHHHHHHHHHhhhhhccccC
Q 007970 400 VEG--------YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI----SLARKPGEALLLWKEIKERCEVKKEGVNA 467 (583)
Q Consensus 400 i~~--------~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 467 (583)
|.. -....+.+.+.++|+..++. ++....||.-+--.| .++.+...|.+++..++
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI------------ 431 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI------------ 431 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh------------
Confidence 211 12345666666666666653 333444444333322 33455666666666555
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 468 DSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 468 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
|.-|...+|...|..=.+.+.++...+++++..+.
T Consensus 432 ------G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 432 ------GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred ------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 33566666666666666666666666666666543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-12 Score=126.78 Aligned_cols=281 Identities=12% Similarity=0.106 Sum_probs=215.8
Q ss_pred cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN--ILLKGYCQQLQID 303 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~ 303 (583)
.|+++.|.+.+...... .+-....|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++
T Consensus 97 eGd~~~A~k~l~~~~~~----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~ 170 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENH 170 (398)
T ss_pred CCCHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHH
Confidence 69999999888876553 1112333444455668899999999999999875 45543332 3467889999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHH
Q 007970 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK-------ISYTTLMKAFALSSQPKLA 376 (583)
Q Consensus 304 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a 376 (583)
.|...++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++. ..|..++.......+.+..
T Consensus 171 ~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 171 AARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999997543 456788889999999999999999999999998655322 1333344444445566777
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
.++++.+.+ ..+.++.....+...+...|+.++|.+++.+..+. .|+.... ++.+....++++++++.++...+
T Consensus 249 ~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 249 KRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh
Confidence 778877765 34568888999999999999999999999999874 5666333 23334466999999999999998
Q ss_pred HhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchh
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHAS 535 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~ 535 (583)
. .|+. ..+.++...|.+.|++++|.+.|+...+ ..|+...+..+ ..++...
T Consensus 323 ~------------------~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~L-a~~~~~~------- 374 (398)
T PRK10747 323 Q------------------HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWL-ADALDRL------- 374 (398)
T ss_pred h------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHH-HHHHHHc-------
Confidence 7 6665 6788999999999999999999999985 57998887655 7777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 007970 536 QARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 536 ~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
|+.++|.+++++.
T Consensus 375 ----------g~~~~A~~~~~~~ 387 (398)
T PRK10747 375 ----------HKPEEAAAMRRDG 387 (398)
T ss_pred ----------CCHHHHHHHHHHH
Confidence 8889998888654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.1e-15 Score=138.45 Aligned_cols=259 Identities=17% Similarity=0.152 Sum_probs=76.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
.+...+.+.|++++|++++...... ..+| +...|..+...+...++++.|.+.++.+...+ +.+...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~---~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK---IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccc-ccccccccccccc-
Confidence 4566666777777777776544332 1122 33334444445555666667777766666554 2244455555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHH
Q 007970 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFALSSQPKL 375 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~ 375 (583)
...+++++|.+++....+. .++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred ccccccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666555332 2344455555566666666666666666654422 23345555556666666666666
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007970 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (583)
|...+++..+ ..|.|......++..+...|+.+++.+++....+.. +.|+..+..+..++...|++++|+.+|++..
T Consensus 165 A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 165 ALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 6666666655 223345556666666666666666666666555431 3344455566666666666666666666665
Q ss_pred HHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 456 ERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+. .| |..+...+++++...|+.++|.++.+..
T Consensus 242 ~~------------------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 242 KL------------------NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HH------------------STT-HHHHHHHHHHHT---------------
T ss_pred cc------------------ccccccccccccccccccccccccccccccc
Confidence 54 33 4455556666666666666666666554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=139.35 Aligned_cols=253 Identities=17% Similarity=0.153 Sum_probs=78.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 007970 256 TVVSALVKAGSMDRARQVLAEMTRIG-VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334 (583)
Q Consensus 256 ~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 334 (583)
.+...+.+.|++++|+++++...... .+.+...+..+...+...++++.|...++++.... +-+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence 34555666677777777775433322 23344455555555666667777777776665422 1233445555554 56
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 414 (583)
.+++++|.+++....+. .++...+..++..+...++++++..+++.+......+.+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred ccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66677777666655443 2344555666666666677777777766665433344566666666666777777777777
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 007970 415 IIERMKENGFYP-NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493 (583)
Q Consensus 415 ~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 493 (583)
.+++.++. .| |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----------------PDDPDLWDALAAAYLQLG 228 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------------------HTSCCHCHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----------------cCHHHHHHHHHHHhcccc
Confidence 77776664 33 35566666666666777776666666665541 223345556666677777
Q ss_pred hHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhhhhhhcccchh
Q 007970 494 FFRKALEIVACMEE-HGIPPNKTKYKKIYVEMHSRMFTSKHAS 535 (583)
Q Consensus 494 ~~~~A~~~~~~~~~-~~~~p~~~~~~~~~~~~l~~~~~~~~~~ 535 (583)
+.++|+.++++..+ ..- ...+...+.+++........+.
T Consensus 229 ~~~~Al~~~~~~~~~~p~---d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNPD---DPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT----HHHHHHHHHHHT---------
T ss_pred cccccccccccccccccc---cccccccccccccccccccccc
Confidence 77777777777643 522 2222223355555544444333
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.9e-12 Score=122.72 Aligned_cols=261 Identities=12% Similarity=0.085 Sum_probs=204.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT--TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
+.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++.+.+.. |-+......+.
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~-----~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~ 194 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAEL-----ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAE 194 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 333455558999999999999999874 45543332 33678889999999999999999876 66788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDV------VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
..|.+.|++++|.+++..+.+.....+.. .+|..++.......+.+...++++.+.+. .+.+......+...+
T Consensus 195 ~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l 273 (398)
T PRK10747 195 QAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHH
Confidence 99999999999999999997644332222 12333444444455666777777776443 355788889999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 447 (583)
...|+.++|..++.+..+. +++... .++.+....++.+++++.++...+. .+-|...+..+...|...+++++|
T Consensus 274 ~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998763 455532 2334445669999999999999876 344666788899999999999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+.|+.+.+. .|+...+..+..++.+.|+.++|..++++-..
T Consensus 348 ~~~le~al~~------------------~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 348 SLAFRAALKQ------------------RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHhc------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999975 89999999999999999999999999998754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-12 Score=125.53 Aligned_cols=288 Identities=12% Similarity=0.055 Sum_probs=208.1
Q ss_pred HhcCChhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 224 MNEGRVSDTVRMLGAMRRQEDNASHPD-HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI 302 (583)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 302 (583)
...|+++.|.+.+....+. .|+ ...+.....+....|+.+.|.+.+..+.+....+...........+...|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~-----~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH-----AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH
Confidence 4589999999999887764 344 4445566678888999999999999988754222223444568888999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHH
Q 007970 303 DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT-TLMKAF---ALSSQPKLANK 378 (583)
Q Consensus 303 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~l~~~~---~~~~~~~~a~~ 378 (583)
+.|...++.+.+.. +.+...+..+...+...|++++|.+++..+.+.+.. +...+. .-..++ ...+..+++.+
T Consensus 170 ~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 170 HAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999997653 446678889999999999999999999999998754 333332 111221 22223333333
Q ss_pred HHHHHhcCC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHhHHHHHHHH
Q 007970 379 VFDEMLRDP--RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY---GSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 379 ~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
.+..+.+.. ..+.+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+++.+++
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 444444321 12247889999999999999999999999999985 3444321 1122223445788899999988
Q ss_pred HHHHhhhhhccccCCCCCCCCCCCCH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhc
Q 007970 454 IKERCEVKKEGVNADSDLPPPLKPDE---ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFT 530 (583)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~ 530 (583)
..+. .|+. ....++...|.+.|++++|.+.|+........|++..+..+ ..++...
T Consensus 325 ~lk~------------------~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L-a~ll~~~-- 383 (409)
T TIGR00540 325 QAKN------------------VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA-ADAFDQA-- 383 (409)
T ss_pred HHHh------------------CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH-HHHHHHc--
Confidence 8876 4443 56778999999999999999999965444578999887755 7777776
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhc
Q 007970 531 SKHASQARQDRRRERKRAAEAFKFWLG 557 (583)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~a~~~~~~ 557 (583)
|+.++|.+++++
T Consensus 384 ---------------g~~~~A~~~~~~ 395 (409)
T TIGR00540 384 ---------------GDKAEAAAMRQD 395 (409)
T ss_pred ---------------CCHHHHHHHHHH
Confidence 777777777764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-11 Score=121.60 Aligned_cols=291 Identities=10% Similarity=0.032 Sum_probs=207.0
Q ss_pred hcCChhHHHHHHHHHHHhCCCcchh-HHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCC
Q 007970 105 RASRKHLLVFVLERILEMGITLCMT-TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDD 183 (583)
Q Consensus 105 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (583)
..|+++.|.+.+.+..+.. |++. .+-....++.+.|+.+.|.+.+....+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-------------------------- 147 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-------------------------- 147 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------
Confidence 5689999999888876653 4433 3344567778889999999998887652
Q ss_pred cHHHHHhhcCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 007970 184 DDEVFEKLLPNSINPSSEPPLLPKTFAPNS--RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261 (583)
Q Consensus 184 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (583)
.|+. .+.......+...|+++.|.+.++.+.+. .+-+...+..+...+
T Consensus 148 --------------------------~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~----~P~~~~~l~ll~~~~ 197 (409)
T TIGR00540 148 --------------------------AGNDNILVEIARTRILLAQNELHAARHGVDKLLEM----APRHKEVLKLAEEAY 197 (409)
T ss_pred --------------------------CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 1332 23444578888899999999999999885 344667788889999
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcC
Q 007970 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY---CQQLQIDKAKELLREMADDAK--IEPDVVSYNILIDGFILID 336 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~ 336 (583)
...|+++.|.+++..+.+.+..+.......-..++ ...+..+.+.+.+..+..... .+.+...+..+...+...|
T Consensus 198 ~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 198 IRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 99999999999999999887543332211111222 222222333334444433210 1237788888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHHcCCHHH
Q 007970 337 DSAGALTFFNEMRARGIAPTKIS--Y-TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI--VAWNMLVEGYCRMGLVEE 411 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 411 (583)
+.++|.+++++..+. .|+... + ....-.....++.+.+.+.++...+. .+-|+ ....++...+.+.|++++
T Consensus 278 ~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 278 DHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred ChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHH
Confidence 999999999999886 334332 1 11111223457788899999888874 34444 677799999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 412 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
|.+.|+........|+...+..+...+.+.|+.++|.++|++....
T Consensus 354 A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 354 AADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999996444345799999999999999999999999999987654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-10 Score=104.46 Aligned_cols=330 Identities=14% Similarity=0.065 Sum_probs=210.1
Q ss_pred CCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCC
Q 007970 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203 (583)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (583)
...|...+-.....+.+.|..+.|...|.......|-..+.+..+..... .......+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit----------~~e~~~~l~----------- 218 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT----------DIEILSILV----------- 218 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc----------hHHHHHHHH-----------
Confidence 34455555555666777888888988888877765554443333221111 111111111
Q ss_pred CCCCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 007970 204 LLPKTFAPN--SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG 281 (583)
Q Consensus 204 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 281 (583)
.+.+.+ ...=--+..++....+.+++..-....... |.+-+...-+....+.....++|+|+.+|+++.+..
T Consensus 219 ---~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~---gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD 292 (559)
T KOG1155|consen 219 ---VGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSV---GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND 292 (559)
T ss_pred ---hcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 111111 111123445666666777777777777665 344333333344444556778889999998888763
Q ss_pred CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007970 282 VP---ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358 (583)
Q Consensus 282 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 358 (583)
| .|..+|+.++ |.+..+-.-+. +-....... +--+.|+.++..-|.-.++.++|+..|+...+.+ +-...
T Consensus 293 -PYRl~dmdlySN~L--Yv~~~~skLs~-LA~~v~~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~ 365 (559)
T KOG1155|consen 293 -PYRLDDMDLYSNVL--YVKNDKSKLSY-LAQNVSNID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLS 365 (559)
T ss_pred -CCcchhHHHHhHHH--HHHhhhHHHHH-HHHHHHHhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhH
Confidence 2 2456666655 33322211111 111111112 2334566667777777888888888888888764 33466
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
.|+.+..-|....+...|.+-+...++ -.|.|-..|-.|.++|.-.+.+.-|+-+|++..+. .+-|...|..|..+|
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECY 442 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHH
Confidence 777777788888888888888888877 45677788888888888888888888888888775 244677888888888
Q ss_pred HhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+.++.++|++.|+++.... ..+...+..|...|-+.++.++|...+++..+
T Consensus 443 ~kl~~~~eAiKCykrai~~~-----------------dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLG-----------------DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHhccHHHHHHHHHHHHhcc-----------------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888888888887642 33556778888888888888888888887654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-11 Score=106.02 Aligned_cols=293 Identities=15% Similarity=0.150 Sum_probs=200.2
Q ss_pred cCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcH
Q 007970 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185 (583)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 185 (583)
+.+.++|.++|-+|.+.+ +.+..+--+|.+.|-+.|..+.|+++.+.+.++. +.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dl------------------------ 101 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DL------------------------ 101 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CC------------------------
Confidence 456777777777777653 4445555667777777777777777777766520 00
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 007970 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265 (583)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 265 (583)
.+..-..+...|..-|...|-++.|+.+|..+.+. ...-......|+..|-...
T Consensus 102 ----------------------T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----~efa~~AlqqLl~IYQ~tr 155 (389)
T COG2956 102 ----------------------TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE----GEFAEGALQQLLNIYQATR 155 (389)
T ss_pred ----------------------chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----hhhhHHHHHHHHHHHHHhh
Confidence 00111234456677777888888888888887764 2333556777888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 266 SMDRARQVLAEMTRIGVPAN----RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
+|++|+++-+.+.+.+-.+. ...|.-|...+....+.+.|..++.+..+.. +..+..--.+.......|+++.|
T Consensus 156 eW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~A 233 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKA 233 (389)
T ss_pred HHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHH
Confidence 88888888888877654333 2344555666666788888888888887542 23333444455677788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 342 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
++.++...+.+..--+.+...|..+|.+.|++++....+..+.+. .+....-..+...-....-.+.|..++.+-+.
T Consensus 234 V~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 234 VEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 999988888765555677788888999999999999988888763 34444455555555555667777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCCHhHHHHHHHHHHHH
Q 007970 422 NGFYPNVATYGSLANGISL---ARKPGEALLLWKEIKER 457 (583)
Q Consensus 422 ~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 457 (583)
. +|+...+..++..... -|...+.+..++.|...
T Consensus 311 r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 311 R--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred h--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 4 7899888888887533 34566677777777665
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-11 Score=110.36 Aligned_cols=226 Identities=14% Similarity=0.044 Sum_probs=165.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 374 (583)
.+.-.|+.-.|..-|+..+....- +...|--+...|....+.++....|+.....+ +.++.+|..-.+...-.++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 345578899999999999864322 22337777778999999999999999999875 446778877778888889999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
+|..=|++.+. -.+.+...|-.+..+..+.+++++++..|++.++. ++--+..|+.....+...+++++|.+.|+..
T Consensus 412 ~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 412 EAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999986 34455666777777777889999999999999986 6667789999999999999999999999999
Q ss_pred HHHhhhhhccccCCCCCCCCCCCC--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhhhhhcc
Q 007970 455 KERCEVKKEGVNADSDLPPPLKPD--EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK-YKKIYVEMHSRMFTS 531 (583)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~~~~~~l~~~~~~ 531 (583)
++.-... ..+..+ ..+...++..- -.+++..|..++++..+ +.|.... +..+ ..+
T Consensus 489 i~LE~~~-----------~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tl-aq~------- 546 (606)
T KOG0547|consen 489 IELEPRE-----------HLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETL-AQF------- 546 (606)
T ss_pred Hhhcccc-----------ccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHH-HHH-------
Confidence 8751100 011112 22233333333 44999999999999975 4554432 3222 222
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 532 KHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
...+|..++|+++|++.
T Consensus 547 ----------~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 547 ----------ELQRGKIDEAIELFEKS 563 (606)
T ss_pred ----------HHHHhhHHHHHHHHHHH
Confidence 34459999999998753
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-13 Score=126.17 Aligned_cols=288 Identities=17% Similarity=0.158 Sum_probs=221.4
Q ss_pred CChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHH
Q 007970 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG--VPANRITYNILLKGYCQQLQIDK 304 (583)
Q Consensus 227 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 304 (583)
-+..+|+..|..+..+ ..-.......+..+|...+++++|.++|+.+.+.. .--+..+|.+.+-.+-+ +-
T Consensus 333 y~~~~A~~~~~klp~h----~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v 404 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH----HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EV 404 (638)
T ss_pred HHHHHHHHHHHhhHHh----cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hH
Confidence 3567899999886664 33334666778899999999999999999998753 11245667766644432 22
Q ss_pred HHHHH-HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 305 AKELL-REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP-TKISYTTLMKAFALSSQPKLANKVFDE 382 (583)
Q Consensus 305 A~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 382 (583)
++..+ +.+++. -+..+.+|.++..+|..+++++.|++.|++..+. .| ...+|+.+..-+.....+|.|...|..
T Consensus 405 ~Ls~Laq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 405 ALSYLAQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 22222 233322 2456789999999999999999999999999986 44 688899999889999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhh
Q 007970 383 MLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP-NVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461 (583)
Q Consensus 383 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 461 (583)
.+. -.+.+-..|..+...|.+.++++.|+-.|+++.+- .| +.+....+...+.+.|+.++|+++++++...
T Consensus 481 Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---- 552 (638)
T KOG1126|consen 481 ALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL---- 552 (638)
T ss_pred hhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc----
Confidence 986 33445567777889999999999999999999975 44 5566777778899999999999999999865
Q ss_pred hccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHH
Q 007970 462 KEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQD 540 (583)
Q Consensus 462 ~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 540 (583)
.|. ...--..+..+...+++++|+..++++++ +.|+..+...++...+.+.
T Consensus 553 --------------d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~------------ 604 (638)
T KOG1126|consen 553 --------------DPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRL------------ 604 (638)
T ss_pred --------------CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHH------------
Confidence 443 34444556777889999999999999986 7899888777777777776
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcccccCCCCCC
Q 007970 541 RRRERKRAAEAFKFWLGLPNSYYGSEWRLDPMDGD 575 (583)
Q Consensus 541 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 575 (583)
|..+.|..-+. -+|+.+|.|.+
T Consensus 605 -----~~~~~Al~~f~--------~A~~ldpkg~~ 626 (638)
T KOG1126|consen 605 -----GNTDLALLHFS--------WALDLDPKGAQ 626 (638)
T ss_pred -----ccchHHHHhhH--------HHhcCCCccch
Confidence 88888886553 35667666655
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-10 Score=104.42 Aligned_cols=279 Identities=15% Similarity=0.118 Sum_probs=216.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 007970 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286 (583)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 286 (583)
.|++.+...-+....+.-...+++.|+.+|+.+.+.. +--..|..+|..++-.-.....+ ..+.+-...-.+--+
T Consensus 256 ~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~skL----s~LA~~v~~idKyR~ 330 (559)
T KOG1155|consen 256 VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKSKL----SYLAQNVSNIDKYRP 330 (559)
T ss_pred ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhHHH----HHHHHHHHHhccCCc
Confidence 4566667777777778888999999999999999863 22233677888777543222221 222221111113345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.|+..+.+.|+-.++.++|...|+..++.+ +.....|+.+..-|...++...|++-++..++-. +-|...|-.+.++
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 677788899999999999999999998643 3456789999999999999999999999999874 6688999999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 446 (583)
|.-.+.+.-|+-+|++..+ -.|.|...|.+|..+|.+.++.++|++-|.+....|- .+...+..|...|-+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999987 5677899999999999999999999999999998763 366889999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
|.+.|++.++....++ .+.|. ......|..-+.+.+++++|..+......
T Consensus 485 Aa~~yek~v~~~~~eg-----------~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEG-----------EIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHHhhc-----------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999999888632211 12342 34555577788899999999887776653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-10 Score=106.41 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=174.6
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340 (583)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 340 (583)
+.-.|+.-.|.+-|+..++.... +...|.-+..+|....+.++....|+...+...- ++.+|..-...+.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE--NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC--CCchhHhHHHHHHHHHHHHH
Confidence 34468888999999999987633 3344777888899999999999999999765443 44456666666677789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 341 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
|..=|++.+... +.+...|..+..+..+.++++++...|++..+ .+|.-+..|+.....+...+++++|.+.|+...
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 999999999863 34566777777777889999999999999988 577788999999999999999999999999988
Q ss_pred HCCCCCC-------HHHH--HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHH
Q 007970 421 ENGFYPN-------VATY--GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICV 490 (583)
Q Consensus 421 ~~g~~p~-------~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 490 (583)
+. .|+ +..+ ..++ .+...+++..|+.+++++.+. .|.. ..+.+|...-.
T Consensus 490 ~L--E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~------------------Dpkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIEL------------------DPKCEQAYETLAQFEL 548 (606)
T ss_pred hh--ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHcc------------------CchHHHHHHHHHHHHH
Confidence 64 333 2221 2222 233458999999999999865 6654 78999999999
Q ss_pred hhhhHHHHHHHHHHHHH
Q 007970 491 RAAFFRKALEIVACMEE 507 (583)
Q Consensus 491 ~~g~~~~A~~~~~~~~~ 507 (583)
..|+.++|+++|++...
T Consensus 549 Q~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 549 QRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999999864
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.6e-12 Score=123.02 Aligned_cols=283 Identities=13% Similarity=0.079 Sum_probs=216.8
Q ss_pred ChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHH
Q 007970 108 RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEV 187 (583)
Q Consensus 108 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 187 (583)
+..+|+..|..+... +.-+.++...+..+|...+++++|+++|+.+....|-.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r-------------------------- 386 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR-------------------------- 386 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--------------------------
Confidence 567889999885554 45566888889999999999999999999998753211
Q ss_pred HHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHH-HHHHhcccCCCCCCHHHHHHHHHHHHHcCC
Q 007970 188 FEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML-GAMRRQEDNASHPDHVTYTTVVSALVKAGS 266 (583)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 266 (583)
..+..+|.+.+-.+-+. -++..+ +.+... .+-.+.+|.++.++|.-.++
T Consensus 387 ----------------------v~~meiyST~LWHLq~~----v~Ls~Laq~Li~~----~~~sPesWca~GNcfSLQkd 436 (638)
T KOG1126|consen 387 ----------------------VKGMEIYSTTLWHLQDE----VALSYLAQDLIDT----DPNSPESWCALGNCFSLQKD 436 (638)
T ss_pred ----------------------ccchhHHHHHHHHHHhh----HHHHHHHHHHHhh----CCCCcHHHHHhcchhhhhhH
Confidence 24556666666554322 222222 223332 34457899999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhcCCHHHHHH
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS---YNILIDGFILIDDSAGALT 343 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~ 343 (583)
.+.|++.|+..++.. +-...+|+.+.+-+.....+|.|...|+..+. .|+.. |-.+...|.+.++++.|+-
T Consensus 437 h~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred HHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHHHhhhhheeccchhhHHHH
Confidence 999999999998865 33778889888889999999999999998873 44444 4456677889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007970 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 423 (583)
.|+.+.+-+ +-+......+...+.+.|+.++|+++++++.. -.+.|+..--..+..+...+++++|+..++++++.
T Consensus 511 ~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~- 586 (638)
T KOG1126|consen 511 HFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQELEELKEL- 586 (638)
T ss_pred HHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-
Confidence 999998864 33566777778888899999999999999876 34556655556667788889999999999999985
Q ss_pred CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 424 FYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
++-+...|..+...|.+.|+.+.|+.-|..+...
T Consensus 587 vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 587 VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 3445567788888999999999999998888754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-11 Score=104.99 Aligned_cols=292 Identities=16% Similarity=0.155 Sum_probs=186.4
Q ss_pred CCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHH
Q 007970 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV 258 (583)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll 258 (583)
.+.+.|.+.|-.++ ...+.+..+..+|.+.|-+.|..+.|+++...+....+....-.......|.
T Consensus 49 ~Q~dKAvdlF~e~l--------------~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 49 NQPDKAVDLFLEML--------------QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred cCcchHHHHHHHHH--------------hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 44555555555555 2223445556677788888888888888888777642111111123445566
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhc
Q 007970 259 SALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV---VSYNILIDGFILI 335 (583)
Q Consensus 259 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~ 335 (583)
.-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+..+-.... ..|.-+...+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 67777888888888888887754 2344556677778888888888888877776543322222 2345555555667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007970 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415 (583)
Q Consensus 336 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 415 (583)
.+.+.|..++++..+.+ +.....--.+.+.....|++..|.+.++.+.+. +..--..+...|..+|...|+.++...+
T Consensus 194 ~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 194 SDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 77888888888877753 223344445566677788888888888887763 2222245567777888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHH---hh
Q 007970 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICV---RA 492 (583)
Q Consensus 416 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~ 492 (583)
+..+.+. .+....-..+...-......+.|...+.+-... +|+...+..++..-. ..
T Consensus 272 L~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r------------------~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 272 LRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR------------------KPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh------------------CCcHHHHHHHHHhhhccccc
Confidence 8887765 344444455555544555666666666666655 788877777776542 33
Q ss_pred hhHHHHHHHHHHHHH
Q 007970 493 AFFRKALEIVACMEE 507 (583)
Q Consensus 493 g~~~~A~~~~~~~~~ 507 (583)
|...+.+-.++.|..
T Consensus 332 g~~k~sL~~lr~mvg 346 (389)
T COG2956 332 GRAKESLDLLRDMVG 346 (389)
T ss_pred cchhhhHHHHHHHHH
Confidence 556677777777753
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.5e-10 Score=100.94 Aligned_cols=287 Identities=14% Similarity=0.110 Sum_probs=225.9
Q ss_pred cCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcH
Q 007970 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDD 185 (583)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 185 (583)
.|++..|..+..+-.+.+ ......|..-+.+.-..|+.+.+-..+.+..+..
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~--------------------------- 148 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA--------------------------- 148 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC---------------------------
Confidence 589999999988877766 2233455556677788899999999888887621
Q ss_pred HHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC
Q 007970 186 EVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG 265 (583)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 265 (583)
-.++..+.-.........|+++.|..-+.++... -+.++........+|.+.|
T Consensus 149 -----------------------~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~----~pr~~~vlrLa~r~y~~~g 201 (400)
T COG3071 149 -----------------------GDDTLAVELTRARLLLNRRDYPAARENVDQLLEM----TPRHPEVLRLALRAYIRLG 201 (400)
T ss_pred -----------------------CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh----CcCChHHHHHHHHHHHHhc
Confidence 1355667778888899999999999999998886 4556778889999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 266 SMDRARQVLAEMTRIGVPANR-------ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338 (583)
Q Consensus 266 ~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 338 (583)
++..+..++..+.+.+.-.+. .+|+.+++-....+..+.-...++...+.. +.++..-..++.-+..+|+.
T Consensus 202 ~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 202 AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCCh
Confidence 999999999999998865554 355666666666666666666777775433 45566667788888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 007970 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIER 418 (583)
Q Consensus 339 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 418 (583)
++|.++..+..+.+..|. ... .-.+.+.++...-++..++-.+.++ .++..+.+|...|.+.+.|.+|.+.|+.
T Consensus 280 ~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h~--~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 280 DEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQHP--EDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhCC--CChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999998876665 222 2245677888888888877777444 4558889999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 419 MKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 419 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+ ..|+..+|+.+..++.+.|+..+|.+..++....
T Consensus 354 Al~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 354 ALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 886 4799999999999999999999999999988754
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-10 Score=102.03 Aligned_cols=271 Identities=15% Similarity=0.194 Sum_probs=219.9
Q ss_pred cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 305 (583)
.|++..|++...+-.+. ..-....|..-..+.-..|+.+.+-.++.++.+..-.++....-.........|+++.|
T Consensus 97 eG~~~qAEkl~~rnae~----~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH----GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred cCcHHHHHHHHHHhhhc----CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhH
Confidence 79999999999997776 23335667777888889999999999999999875467777888888899999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 007970 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK-------ISYTTLMKAFALSSQPKLANK 378 (583)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~ 378 (583)
..-++++.... +.++........+|.+.|++.....++..+.+.|.-.++ .+|..+++-....+..+.-..
T Consensus 173 ~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 173 RENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 99999987532 557788899999999999999999999999999876554 356777776666666676677
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.|+...+ ..+.++..-.+++.-+.++|+.++|.++..+..+.+..|+ -...-.+.+.++.+.-++..+...+..
T Consensus 251 ~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 251 WWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence 8888776 4556777788899999999999999999999998876665 223334667888888888888777762
Q ss_pred hhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhh
Q 007970 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 528 (583)
+-+...+.+|...|.+.+.|.+|...|+.... ..|+..+|.-+ ...+...
T Consensus 325 -----------------~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~l-a~~~~~~ 374 (400)
T COG3071 325 -----------------PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAEL-ADALDQL 374 (400)
T ss_pred -----------------CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHH-HHHHHHc
Confidence 33347889999999999999999999998774 67888888876 7777666
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-09 Score=101.38 Aligned_cols=465 Identities=12% Similarity=0.041 Sum_probs=304.6
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
..-+..+++-+....+ +.-|+-+-+++.. +.-|+...--++.++.-.|++++|..+...-.-.
T Consensus 16 ~~~~~~~~r~~l~q~~--y~~a~f~adkV~~-------------l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le-- 78 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHR--YKTALFWADKVAG-------------LTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE-- 78 (611)
T ss_pred HHHHHHHHHHHHHHHh--hhHHHHHHHHHHh-------------ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--
Confidence 3344444444444444 6667766666654 2333333444777888888888888887665332
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHHh-------C--CCcchhH----HHHHH-------HHHHcCCChH
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLER----ILEM-------G--ITLCMTT----FQSLV-------AAYVGFGDLE 145 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~-------~--~~~~~~~----~~~l~-------~~~~~~g~~~ 145 (583)
+.|..+......++.+..++++|..++.. +... + +.+|..- -+... ..|....+.+
T Consensus 79 ~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~ 158 (611)
T KOG1173|consen 79 KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNRE 158 (611)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHH
Confidence 25777777778888888888888887772 1110 0 0011100 11111 2233344556
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhcccc-------------c--cCCCCCCCcHHHHHhhcCCCCC-CC--CCCCCCCC
Q 007970 146 IAETIVQAMREGRRDVCKIIRELDLEDYS-------------S--ENEGDDDDDDEVFEKLLPNSIN-PS--SEPPLLPK 207 (583)
Q Consensus 146 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~~~ 207 (583)
+|...|.+....+..-......+...... + ....+.+.-...|+-....... .+ .....--.
T Consensus 159 ~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~ 238 (611)
T KOG1173|consen 159 EARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLI 238 (611)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhh
Confidence 66655554443332221111111000000 0 0001111111122211100000 00 00001112
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 007970 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287 (583)
Q Consensus 208 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (583)
+...++.....-..-+...+++.+..++++...+. .++....+..-|.++...|+..+-..+=..+++. .|..+.
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~ 313 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKAL 313 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCc
Confidence 33556677777788888999999999999999886 5666667777777888999988877777777775 367788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
+|-++.-.|...|+..+|.+.|.+...-. +.=...|-.+...|+..+..++|+..+...-+.- +-...-+.-+.--|
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey 390 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEY 390 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHH
Confidence 99999999999999999999998885321 1224678889999999999999999998877641 21222233344457
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHHhc
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----G--FYPNVATYGSLANGISLA 441 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g--~~p~~~~~~~l~~~~~~~ 441 (583)
.+.++.+.|.++|..... -.|.|+...+-+.-.....+.+.+|..+|+..+.. + ..--..+++.|..+|.+.
T Consensus 391 ~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 789999999999999876 45667888888887788889999999999988731 0 112456789999999999
Q ss_pred CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 442 RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 442 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
+++++|+..+++.+... +-+..++.++.-.|...|+++.|...|.+.. .+.|+..+...+
T Consensus 469 ~~~~eAI~~~q~aL~l~-----------------~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~l 528 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS-----------------PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISEL 528 (611)
T ss_pred hhHHHHHHHHHHHHHcC-----------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHH
Confidence 99999999999998762 4466899999999999999999999999987 588998777666
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-08 Score=97.11 Aligned_cols=439 Identities=14% Similarity=0.114 Sum_probs=284.3
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
...|..++..|- .+. +...+.+.+.+++. .+-...|.....-.+...|+.++|...........+
T Consensus 8 ~~lF~~~lk~yE-~kQ--YkkgLK~~~~iL~k------------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~ 72 (700)
T KOG1156|consen 8 NALFRRALKCYE-TKQ--YKKGLKLIKQILKK------------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL 72 (700)
T ss_pred HHHHHHHHHHHH-HHH--HHhHHHHHHHHHHh------------CCccchhHHhccchhhcccchHHHHHHHHHHhccCc
Confidence 445666666664 344 88899999988874 344455555555566678999999999988887554
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 169 (583)
.+.+.|+.+.-.+....++++|+..|......+ +.|...+.-|.-.-++.++++-....-..+.+..+.....+....
T Consensus 73 -~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~A 150 (700)
T KOG1156|consen 73 -KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFA 150 (700)
T ss_pred -ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 477889988888888889999999999998886 667788887777777778887777776666665554444333332
Q ss_pred hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH------HHHHHhcCChhHHHHHHHHHHhcc
Q 007970 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL------MKGYMNEGRVSDTVRMLGAMRRQE 243 (583)
Q Consensus 170 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~~~ 243 (583)
.++.-.|....|..+.+....+... .|+...+... .....+.|..++|++.+......
T Consensus 151 ---vs~~L~g~y~~A~~il~ef~~t~~~------------~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 151 ---VAQHLLGEYKMALEILEEFEKTQNT------------SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhcc------------CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 2233456677777777776543211 3555544433 24556788888888887766553
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCCCCH
Q 007970 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK-ELLREMADDAKIEPDV 322 (583)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~ 322 (583)
+......-.+-...+.+.+++++|..++..++... |.+...|..+..++.+..+.-++. .+|....+. .|..
T Consensus 215 ---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~---y~r~ 287 (700)
T KOG1156|consen 215 ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK---YPRH 287 (700)
T ss_pred ---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc---Cccc
Confidence 22223334455677889999999999999999875 444555555556665444444444 666666332 1221
Q ss_pred HHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHhcC---------CC
Q 007970 323 VSY-NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL----ANKVFDEMLRD---------PR 388 (583)
Q Consensus 323 ~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~---------~~ 388 (583)
..- ..=+.......-.+..-.++..+.+.|+++- +..+...|-.....+- +..+...+... ..
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 111 1111112222233445567777888887653 3333333322221111 12222222111 01
Q ss_pred CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccc
Q 007970 389 VKVDIVAWN--MLVEGYCRMGLVEEAKRIIERMKENGFYPNVA-TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGV 465 (583)
Q Consensus 389 ~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 465 (583)
-+|....|+ .++..+-+.|+++.|..+++..... .|+.. .|..=.+.+...|.+++|..++++..+.+
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD------- 435 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD------- 435 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-------
Confidence 256655554 5677888999999999999999975 66644 45555677899999999999999998753
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Q 007970 466 NADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 466 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 510 (583)
.||..+-.--+.-..++++.++|.++...+.+.|.
T Consensus 436 ----------~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 436 ----------TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred ----------chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 56655555666677889999999999999987664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-08 Score=94.50 Aligned_cols=483 Identities=12% Similarity=0.116 Sum_probs=280.3
Q ss_pred HHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHCCC
Q 007970 13 WSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPK---KFLQLFDQMHEFGA 89 (583)
Q Consensus 13 ~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~ 89 (583)
-+-.|..+++.++ .++|.+.+..++.. +...+...+.+-..|+.+-+..+++-+.- ....+++.+...
T Consensus 172 ~eeyie~L~~~d~--~~eaa~~la~vln~-----d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r-- 242 (835)
T KOG2047|consen 172 REEYIEYLAKSDR--LDEAAQRLATVLNQ-----DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR-- 242 (835)
T ss_pred HHHHHHHHHhccc--hHHHHHHHHHhcCc-----hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--
Confidence 3445667777776 77777777666532 11111223445567777777766655433 344444444432
Q ss_pred CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHH--hhhHHHHHHH
Q 007970 90 KPD--VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR--EGRRDVCKII 165 (583)
Q Consensus 90 ~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 165 (583)
-+| ...|.+|..-|.+.|.++.|..+|++.... ..+..-|..+.+.|+...+-.-+..+= +. +.+...
T Consensus 243 ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~e---- 314 (835)
T KOG2047|consen 243 FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEE---- 314 (835)
T ss_pred CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChh----
Confidence 234 356899999999999999999999998775 346666777777776543322222111 10 000000
Q ss_pred HhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC
Q 007970 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245 (583)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 245 (583)
...+++.....|+.++..... -...++-+..+.++..|..-+..+ .|+..+-...|.++.+.
T Consensus 315 -----------d~~dl~~~~a~~e~lm~rr~~--~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~--- 376 (835)
T KOG2047|consen 315 -----------DDVDLELHMARFESLMNRRPL--LLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKT--- 376 (835)
T ss_pred -----------hhhhHHHHHHHHHHHHhccch--HHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHc---
Confidence 001111122222222210000 000000112245566776666554 67777888888887775
Q ss_pred CCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007970 246 ASHPD------HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN---RITYNILLKGYCQQLQIDKAKELLREMADDA 316 (583)
Q Consensus 246 ~~~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 316 (583)
+.|. ...|..+...|-..|+++.|..+|++..+...+-- ..+|.....+=.+..+++.|+++.+....-.
T Consensus 377 -vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP 455 (835)
T KOG2047|consen 377 -VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP 455 (835)
T ss_pred -cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Confidence 3332 34678888888999999999999999887654322 3445555555566778888888887764311
Q ss_pred CC----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007970 317 KI----------------EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380 (583)
Q Consensus 317 ~~----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 380 (583)
.. ..+...|...+..-...|-++....+|+.+....+. ++.........+....-++++.++|
T Consensus 456 ~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 456 TNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 10 012334666666666778888889999999887543 3333333333344556688899999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHhHHHHHHHHHH
Q 007970 381 DEMLRDPRVKVDIVAWNMLVEGYCRM---GLVEEAKRIIERMKENGFYPNVATYGSLANG--ISLARKPGEALLLWKEIK 455 (583)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 455 (583)
++-+.-+..+.-...|+..+.-+.+. -.++.|..+|++.++ |++|...-+-.|+.+ =-..|....|+.+++++-
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88776433333346788777766653 468999999999998 677655433333333 234688888999999876
Q ss_pred HHhhhhhccccCCCCCCCCCCCCH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHhhhhhhcc
Q 007970 456 ERCEVKKEGVNADSDLPPPLKPDE--ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY--KKIYVEMHSRMFTS 531 (583)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~~~~~~l~~~~~~ 531 (583)
.. +++.. ..|+..|.-....=-......++++..+. -|+...- -.-+.++-..
T Consensus 614 ~~-----------------v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtk---- 670 (835)
T KOG2047|consen 614 SA-----------------VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETK---- 670 (835)
T ss_pred hc-----------------CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhh----
Confidence 53 34443 56666554333332334555666666542 3443321 1112344444
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCccccc
Q 007970 532 KHASQARQDRRRERKRAAEAFKFWLGL----PNSYYGSEWRL 569 (583)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~ 569 (583)
-|..+.|...+.-- +.+-.+.-|..
T Consensus 671 -------------lGEidRARaIya~~sq~~dPr~~~~fW~t 699 (835)
T KOG2047|consen 671 -------------LGEIDRARAIYAHGSQICDPRVTTEFWDT 699 (835)
T ss_pred -------------hhhHHHHHHHHHhhhhcCCCcCChHHHHH
Confidence 49999998877432 33333555543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-10 Score=111.94 Aligned_cols=438 Identities=14% Similarity=0.093 Sum_probs=245.3
Q ss_pred CCCCCCCCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHH
Q 007970 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQL 80 (583)
Q Consensus 1 m~~~g~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 80 (583)
|...|+.|+.+||..+|..||..|+ .+.|- +|.-|.. ...+-+...|+.++......++.+.+.
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gd--ieaat-if~fm~~-----------ksLpv~e~vf~~lv~sh~~And~Enpk-- 79 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGD--IEAAT-IFPFMEI-----------KSLPVREGVFRGLVASHKEANDAENPK-- 79 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCC--Ccccc-chhhhhc-----------ccccccchhHHHHHhcccccccccCCC--
Confidence 3468999999999999999999998 77776 7776654 235567778888888888888887776
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChhH---HHHHHHHHH----HhCCCcchhHH--------------HHHHHHHH
Q 007970 81 FDQMHEFGAKPDVLTYNVMIKLCARASRKHL---LVFVLERIL----EMGITLCMTTF--------------QSLVAAYV 139 (583)
Q Consensus 81 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~ 139 (583)
.|...||..|..+|...|+... +.+.++.+. ..|+..-..-+ ..++....
T Consensus 80 ---------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv 150 (1088)
T KOG4318|consen 80 ---------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLV 150 (1088)
T ss_pred ---------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHH
Confidence 4788889999999988888654 222122221 22221111111 11122222
Q ss_pred cCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
-.|-++.+++++..++....+.+... .+. ...-......++...+- . . .+ .+++.++..+
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p~~v-fLr------qnv~~ntpvekLl~~ck-s----------l-~e-~~~s~~l~a~ 210 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAPFQV-FLR------QNVVDNTPVEKLLNMCK-S----------L-VE-APTSETLHAV 210 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccchHHH-HHH------HhccCCchHHHHHHHHH-H----------h-hc-CCChHHHHHH
Confidence 23334444444433332111100000 000 00000011111111100 0 0 11 4889999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
+.+-...|+.+.|..++..|++. |.+.+.+-|-.++-+ .++...+..++..|.+.|+.|+..|+.-.+-.+..+
T Consensus 211 l~~alaag~~d~Ak~ll~emke~---gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 211 LKRALAAGDVDGAKNLLYEMKEK---GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHHHHhcCchhhHHHHHHHHHHc---CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 99999999999999999999988 577777766666655 788888899999999999999988887666555553
Q ss_pred CCHHHHHHH-----------HHHHHh------------------------cCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 300 LQIDKAKEL-----------LREMAD------------------------DAKIEPDVVSYNILIDGFILIDDSAGALTF 344 (583)
Q Consensus 300 ~~~~~A~~~-----------~~~~~~------------------------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 344 (583)
|....+.+. +..+.+ ..|+......|...+.. ...|.-++..++
T Consensus 285 ~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veql 363 (1088)
T KOG4318|consen 285 GQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQL 363 (1088)
T ss_pred hhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHH
Confidence 332211110 111100 00111111223222221 224555666666
Q ss_pred HHHHHHCCC--CC-CHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHhcCCC-----------
Q 007970 345 FNEMRARGI--AP-TKISYTTLMKAFALSS----------------------QPKLANKVFDEMLRDPR----------- 388 (583)
Q Consensus 345 ~~~m~~~~~--~p-~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~----------- 388 (583)
-..|..... .+ +...|..++.-|.+.- ...+..+......+..+
T Consensus 364 vg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~E 443 (1088)
T KOG4318|consen 364 VGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTE 443 (1088)
T ss_pred HhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHH
Confidence 555533211 11 2233433333332211 11111111111111000
Q ss_pred -----C------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 389 -----V------KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 389 -----~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
. .+-...-+.++-.+++..+..+++..-+.....-+ | ..|..|+.-+....+.+.|..+..+....
T Consensus 444 ler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~ 520 (1088)
T KOG4318|consen 444 LERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTR 520 (1088)
T ss_pred HhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhccc
Confidence 0 00112234455555555555566555444443312 1 56788888888888889998888887654
Q ss_pred hhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 458 CEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.. .+..|..-+..+.+.+.+.+...++..+++++..
T Consensus 521 d~--------------s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 521 DE--------------SIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred ch--------------hhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 22 3455667788899999999999999999999975
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-09 Score=102.24 Aligned_cols=288 Identities=13% Similarity=0.047 Sum_probs=214.5
Q ss_pred CCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCC
Q 007970 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203 (583)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (583)
..-+.........-+...+++.+..++++.+.+..
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--------------------------------------------- 274 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--------------------------------------------- 274 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---------------------------------------------
Confidence 34556666667777777788888888877776632
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 007970 204 LLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283 (583)
Q Consensus 204 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (583)
++....+..-|.++...|+..+-..+=.++.+. .+....+|.++.--|...|+..+|.+.|.+..... +
T Consensus 275 ------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~----yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~ 343 (611)
T KOG1173|consen 275 ------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL----YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-P 343 (611)
T ss_pred ------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh----CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-c
Confidence 466666667777888888887777777777765 45567889988888888899999999998877654 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 363 (583)
.-...|..+.+.|.-.+..+.|+..+....+.- +-...-+.-+.--|.+.+...-|.++|.+.... .+.|+...+-+
T Consensus 344 ~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~El 420 (611)
T KOG1173|consen 344 TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHEL 420 (611)
T ss_pred cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhh
Confidence 334578888888988999999998887775421 112222233344577788899999999888875 35567777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 364 MKAFALSSQPKLANKVFDEMLRDP-----RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 364 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
.-.....+.+.+|..+|+...... ....-..+++.|..+|.+.+.+++|+..+++.+.. .+.+..++..+.-.|
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy 499 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIY 499 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHH
Confidence 766667788899999888876310 01123456888999999999999999999999876 456888999999999
Q ss_pred HhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHH
Q 007970 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 489 (583)
...|+++.|++.|.+... +.|+..+-..++..+
T Consensus 500 ~llgnld~Aid~fhKaL~------------------l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALA------------------LKPDNIFISELLKLA 532 (611)
T ss_pred HHhcChHHHHHHHHHHHh------------------cCCccHHHHHHHHHH
Confidence 999999999999999884 489887777766544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-10 Score=101.85 Aligned_cols=201 Identities=15% Similarity=0.142 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
....+..+...+...|++++|.+.+++..+. .+.+...+..+...+...|++++|.+.++...+.. +.+...+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 3556677777777778888888777777664 23345566667777777777777777777776654 344556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
+...+...|++++|...+++.............+..+...+...|++++|...+.+..... +.+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 6667777777777777777765422212223344445555555555555555555555432 223344444555555555
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 184 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 184 QYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555555442 22333444444445555555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.8e-10 Score=100.85 Aligned_cols=201 Identities=14% Similarity=0.052 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3445556666666666666666666665421 2334555666666666677777777776666543 334455666666
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 007970 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 445 (583)
.+...|++++|.+.++...+....+.....+..+..++...|++++|.+.+.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 6777777777777777776532222334556667777778888888888888777642 334556777777777888888
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 446 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+|...++++.+.. +.+...+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-----------------NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 8888888777641 33445566667777778888888887777653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.4e-09 Score=93.35 Aligned_cols=397 Identities=13% Similarity=0.054 Sum_probs=219.9
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCC
Q 007970 64 VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143 (583)
Q Consensus 64 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 143 (583)
+..++...|++++|...++.+.+.. .++...+..|..++.-.|.+.+|..+-... +.++-....|+....+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCc
Confidence 5566778999999999999887744 466777777777777888888888766543 3344455556677777888
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHH
Q 007970 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT-TLMKG 222 (583)
Q Consensus 144 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~li~~ 222 (583)
-++-..+.+.+.....+..+. +..+...-.+.+|+++|.+++.. .|.-...| .+.-+
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSL-------AsvhYmR~HYQeAIdvYkrvL~d---------------n~ey~alNVy~ALC 194 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSL-------ASVHYMRMHYQEAIDVYKRVLQD---------------NPEYIALNVYMALC 194 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHhc---------------ChhhhhhHHHHHHH
Confidence 777766666555432222211 11112234567899999999833 34444444 34567
Q ss_pred HHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--------------------
Q 007970 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV-------------------- 282 (583)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------------------- 282 (583)
|.+..-++.+.++++-..+. .+.+....+.......+.=+-..|..-.+.+...+-
T Consensus 195 yyKlDYydvsqevl~vYL~q----~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng 270 (557)
T KOG3785|consen 195 YYKLDYYDVSQEVLKVYLRQ----FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG 270 (557)
T ss_pred HHhcchhhhHHHHHHHHHHh----CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence 88888899999999888775 333444444444333332111122222222222110
Q ss_pred ------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHH
Q 007970 283 ------PA-----NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-----LIDDSAGALTFFN 346 (583)
Q Consensus 283 ------~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~~~~~ 346 (583)
-| -+..-..|+-.|.+.++.++|..+.+.+. ...|-......+..+-. ......-|.+.|+
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 00 01122234445667777777777766652 12232222222222111 1112233444444
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 007970 347 EMRARGIAPTK-ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY 425 (583)
Q Consensus 347 ~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 425 (583)
-.-..+..-|. ..-.++..++.-..++++.+-+++.+.. -+..|...--.+.++++..|++.+|.++|-++....++
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s--YF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES--YFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 43333332221 2223444555555667777777776654 22233333334567777777777777777666544344
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHH
Q 007970 426 PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (583)
.+..-...|.++|.+.++++-|+.++-++.. +.+. ..+..+.+.|.+.+.+--|-+.|+.
T Consensus 426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-------------------~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQLAWDMMLKTNT-------------------PSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3333334455667777777777665544321 1222 3333445677777777777777777
Q ss_pred HHHcCCCCCHHHHH
Q 007970 505 MEEHGIPPNKTKYK 518 (583)
Q Consensus 505 ~~~~~~~p~~~~~~ 518 (583)
+.. +.|+++.|.
T Consensus 487 lE~--lDP~pEnWe 498 (557)
T KOG3785|consen 487 LEI--LDPTPENWE 498 (557)
T ss_pred HHc--cCCCccccC
Confidence 653 567776664
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-08 Score=95.02 Aligned_cols=467 Identities=13% Similarity=0.098 Sum_probs=264.4
Q ss_pred HHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHH
Q 007970 18 SRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYN 97 (583)
Q Consensus 18 ~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 97 (583)
+.+...|+ +++|+...++++.. .|.+...+..-+-+.++.++|++|+.+.+.-... ..+...+-
T Consensus 20 n~~~~~~e--~e~a~k~~~Kil~~------------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~f 83 (652)
T KOG2376|consen 20 NRHGKNGE--YEEAVKTANKILSI------------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFF 83 (652)
T ss_pred HHhccchH--HHHHHHHHHHHHhc------------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhH
Confidence 55556666 99999999999863 4567888899999999999999999666543321 11111111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccC
Q 007970 98 VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177 (583)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (583)
-=.-+..+.+..++|+..++.+. +.+..+...-...+.+.|++++|..+|+.+.+...+..+.....++.+.....
T Consensus 84 EKAYc~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 11223347889999999888222 22344666677889999999999999999966543322221111111111000
Q ss_pred CCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhccc-----CCCC-CCH
Q 007970 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED-----NASH-PDH 251 (583)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~-~~~ 251 (583)
.+. +.+... ..-..+-..+....-.+...|++.+|++++....+... .... -+.
T Consensus 160 -----~~~-~~q~v~--------------~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEei 219 (652)
T KOG2376|consen 160 -----QVQ-LLQSVP--------------EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEI 219 (652)
T ss_pred -----hHH-HHHhcc--------------CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhH
Confidence 010 122211 00011233334455677889999999999998832110 0000 111
Q ss_pred H-----HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH-HHHHHHHHHHhcC-----
Q 007970 252 V-----TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR----ITYNILLKGYCQQLQID-KAKELLREMADDA----- 316 (583)
Q Consensus 252 ~-----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~----- 316 (583)
. .-..+.-.+-..|+-++|..++...++.. ++|. ...|.|+.+-....-++ .++..++......
T Consensus 220 e~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l 298 (652)
T KOG2376|consen 220 EEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLL 298 (652)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHH
Confidence 1 12233345567899999999999999876 3443 22333332211111111 1222222211000
Q ss_pred ----CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhcCCCC
Q 007970 317 ----KIEPDVVSY-NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL--SSQPKLANKVFDEMLRDPRV 389 (583)
Q Consensus 317 ----~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~ 389 (583)
.-....+.. +.++..|. +.-+.+.++-.... +..|. ..+..++..+.+ ...+..+..++....+. .
T Consensus 299 ~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~ 371 (652)
T KOG2376|consen 299 SKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--H 371 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--C
Confidence 000011111 22222222 22223332222211 12233 344455544333 22467778877777653 3
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhh
Q 007970 390 KVD-IVAWNMLVEGYCRMGLVEEAKRIIE--------RMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEV 460 (583)
Q Consensus 390 ~~~-~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 460 (583)
+-+ ..+...++......|+++.|++++. .+.+.+..|- +...+...+.+.++.+.|..++.++......
T Consensus 372 p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~ 449 (652)
T KOG2376|consen 372 PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRK 449 (652)
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHH
Confidence 333 4566677888899999999999999 5555544444 5555666677777777777777777665332
Q ss_pred hhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHH
Q 007970 461 KKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQ 539 (583)
Q Consensus 461 ~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~ 539 (583)
...+ .+.. .++.-++..-.+.|+-++|..+++++.+.. .+|.....++ |..+++.
T Consensus 450 ~~t~-----------s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~l-V~a~~~~----------- 505 (652)
T KOG2376|consen 450 QQTG-----------SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQL-VTAYARL----------- 505 (652)
T ss_pred hccc-----------chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHH-HHHHHhc-----------
Confidence 1110 1111 344444555567799999999999998643 4555555555 8888885
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCc
Q 007970 540 DRRRERKRAAEAFKFWLGLPNSYYGS 565 (583)
Q Consensus 540 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 565 (583)
+.+.|..+-+.++..+.-.
T Consensus 506 -------d~eka~~l~k~L~p~~~l~ 524 (652)
T KOG2376|consen 506 -------DPEKAESLSKKLPPLKGLK 524 (652)
T ss_pred -------CHHHHHHHhhcCCCcccch
Confidence 8889999999887777633
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-08 Score=96.63 Aligned_cols=433 Identities=15% Similarity=0.116 Sum_probs=277.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
....|..++..| ..+++...+++.+.+.+.- .-...|.....-.+...|+.++|......-...+ .-+.+.|+.+.-
T Consensus 7 E~~lF~~~lk~y-E~kQYkkgLK~~~~iL~k~-~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl 83 (700)
T KOG1156|consen 7 ENALFRRALKCY-ETKQYKKGLKLIKQILKKF-PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHH-HHHHHHhHHHHHHHHHHhC-CccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHH
Confidence 345566667666 5678888899888888742 2344555555555667899999999888877765 457788999888
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (583)
.+-...++++|++.|......+++...+++.+++... +.++++.....-.++++ -.+.....|
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~---QmRd~~~~~~tr~~LLq--------------l~~~~ra~w 146 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQI---QMRDYEGYLETRNQLLQ--------------LRPSQRASW 146 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HHHhhhhHHHHHHHHHH--------------hhhhhHHHH
Confidence 8888999999999999999988888887777654432 34445544444444441 123456778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHH------HHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVV------SALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
..++.++.-.|+...|..+++...+... ..|+...+.... ....+.|.++.|.+.+..-... +......-.
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~--~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e 223 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQN--TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhh
Confidence 9999999999999999999999987631 246665554333 3445678888888887665443 122233334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI-LIDDSAGAL-TFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
.-...+.+.+++++|..++..++.. .||...|......+. +-.+..++. .+|....+. .|....-..+--...
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r---nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl 298 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER---NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVL 298 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh---CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHh
Confidence 4566788899999999999999764 577666665554433 333334444 556555443 222111111111111
Q ss_pred hcCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC----------CCCCHH--HH
Q 007970 369 LSSQ-PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE----NG----------FYPNVA--TY 431 (583)
Q Consensus 369 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g----------~~p~~~--~~ 431 (583)
...+ .+....++....+. |+++- +..+...|-.-...+-..++.-.+.. .| -+|... ++
T Consensus 299 ~~eel~~~vdkyL~~~l~K-g~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSK-GVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred CcchhHHHHHHHHHHHhhc-CCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 2122 33344455555553 65543 33333333322222212222222211 11 134444 44
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Q 007970 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 510 (583)
-.++..+-..|+++.|..+++.++.+ .|+. ..|..-.+.+.+.|++++|..++++.++..
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdH------------------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDH------------------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhcc------------------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 55667788999999999999999977 7876 778788899999999999999999998643
Q ss_pred CCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 511 PPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 511 ~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
.||.. .++-.+...-++ .+.++|.+...+.
T Consensus 436 ~aDR~-INsKcAKYmLrA-----------------n~i~eA~~~~skF 465 (700)
T KOG1156|consen 436 TADRA-INSKCAKYMLRA-----------------NEIEEAEEVLSKF 465 (700)
T ss_pred chhHH-HHHHHHHHHHHc-----------------cccHHHHHHHHHh
Confidence 34443 333335556666 7888998888766
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-09 Score=96.41 Aligned_cols=411 Identities=11% Similarity=0.092 Sum_probs=238.6
Q ss_pred HHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHH
Q 007970 19 RLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNV 98 (583)
Q Consensus 19 ~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 98 (583)
.+-..|+ +++|+..|.-+... -.|+...+-.|..++.-.|.+.+|..+-....+ ++..-..
T Consensus 66 C~fhLgd--Y~~Al~~Y~~~~~~------------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RL 126 (557)
T KOG3785|consen 66 CYFHLGD--YEEALNVYTFLMNK------------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRL 126 (557)
T ss_pred HHHhhcc--HHHHHHHHHHHhcc------------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHH
Confidence 3345566 99999999888763 456677777788888888889998887766543 3333444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCC
Q 007970 99 MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178 (583)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (583)
++...-+.++-++...+.+.+... ..---+|.......-.+.+|+.+++.+....++..... ...+.+|.+.
T Consensus 127 lfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN---Vy~ALCyyKl 198 (557)
T KOG3785|consen 127 LFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN---VYMALCYYKL 198 (557)
T ss_pred HHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH---HHHHHHHHhc
Confidence 445445555555555554444332 12222334444444456667777766665444332221 1223444455
Q ss_pred CCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc--CC----------------------------
Q 007970 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE--GR---------------------------- 228 (583)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~---------------------------- 228 (583)
.-++-+..++..-++ .++.++.+.|.......+. |+
T Consensus 199 DYydvsqevl~vYL~--------------q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 199 DYYDVSQEVLKVYLR--------------QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred chhhhHHHHHHHHHH--------------hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 444444444444331 1233333333333322221 11
Q ss_pred -----hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 007970 229 -----VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL--- 300 (583)
Q Consensus 229 -----~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 300 (583)
-+.|++++-.+.+. - +..-..++--|.+.+++.+|..+.+++.-. .|-......++ +...|
T Consensus 265 VvFrngEgALqVLP~L~~~-----I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~ 333 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKH-----I--PEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQET 333 (557)
T ss_pred EEEeCCccHHHhchHHHhh-----C--hHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhc
Confidence 22333333333221 1 123344555678889999999888765421 23233333332 23333
Q ss_pred ----CHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 301 ----QIDKAKELLREMADDAKIEPDV-VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL 375 (583)
Q Consensus 301 ----~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 375 (583)
.+.-|...|+-. -.++..-|+ ..-..+.+++.-..++++++-.++.+...-.. |...--.+.++.+..|++.+
T Consensus 334 gSreHlKiAqqffqlV-G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLV-GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHH
Confidence 245566666544 334433333 34566777777888999999999998887433 43344457889999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHH
Q 007970 376 ANKVFDEMLRDPRVKVDIVAW-NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG-SLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~ 453 (583)
|+++|-.+.. ..+ .|..+| +.|.++|.+.+.++.|++++-++.. +.+..+.. .+...|.+.+.+=-|-+.|..
T Consensus 412 aEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 412 AEELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred HHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999988754 123 345555 5567899999999999888766542 23444443 444568889988888888887
Q ss_pred HHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 454 IKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
+... .|+..-|. |+-....-+|..+....-.|-+.
T Consensus 487 lE~l------------------DP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~ 521 (557)
T KOG3785|consen 487 LEIL------------------DPTPENWE---------GKRGACAGLFRQLANHKTDPIPI 521 (557)
T ss_pred HHcc------------------CCCccccC---------CccchHHHHHHHHHcCCCCCCch
Confidence 7653 88888775 34344455666665444444443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-10 Score=113.45 Aligned_cols=234 Identities=15% Similarity=0.106 Sum_probs=127.7
Q ss_pred chHHHHHHHHHHHh---cCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhc---------CCcch
Q 007970 9 HVKAWSTVVSRLAA---SGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANL---------GKPKK 76 (583)
Q Consensus 9 ~~~~~~~li~~~~~---~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~ 76 (583)
+...|...+.+... ...++.++|+..|++..+. .|.+...|..+..++... +++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l------------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~ 322 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM------------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIK 322 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc------------CCccHHHHHHHHHHHHHHHHcCCcccchHHHH
Confidence 34556666665322 2223467888888888873 233456666666555432 23566
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 007970 77 FLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 77 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 156 (583)
|...+++..+.+. -+..++..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++...+
T Consensus 323 A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 323 AKEHAIKATELDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777776666542 245555566666666677777777777766664 44455666666666666776666666666655
Q ss_pred hhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 007970 157 GRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRML 236 (583)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 236 (583)
..| .+...+..++..+...|++++|...+
T Consensus 401 l~P---------------------------------------------------~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 401 LDP---------------------------------------------------TRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCC---------------------------------------------------CChhhHHHHHHHHHhccCHHHHHHHH
Confidence 221 11222222333444556666666666
Q ss_pred HHHHhcccCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007970 237 GAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 237 ~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 314 (583)
+++... ..| +...+..+..++...|+.++|...+..+.... +.+....+.+...|...| +.|...++.+.+
T Consensus 430 ~~~l~~----~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQ----HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHh----ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 665543 223 23334455555556666666666666554431 222333344444445444 355555555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-07 Score=86.47 Aligned_cols=408 Identities=11% Similarity=0.106 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 007970 59 AAYNAVLNACANLGKPKKFLQLFDQMHEF-GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137 (583)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (583)
..|-.-+....++|+.......|+..... -+......|...+......+-.+.+..+|++.++. ++..-..-+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 35566666777888888888888887653 33334556888888888888899999999998875 33446667788
Q ss_pred HHcCCChHHHHHHHHHHHhhhHHHH--------HHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCC
Q 007970 138 YVGFGDLEIAETIVQAMREGRRDVC--------KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTF 209 (583)
Q Consensus 138 ~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (583)
+++.+++++|.+.+..+...+..+. .|...+.+ .......+..-....++...+ ..+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl-is~~p~~~~slnvdaiiR~gi--------------~rf 243 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL-ISQNPDKVQSLNVDAIIRGGI--------------RRF 243 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH-HHhCcchhcccCHHHHHHhhc--------------ccC
Confidence 8899999999999988876433222 11111111 111122222233333333333 111
Q ss_pred CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC----------------------
Q 007970 210 APN--SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG---------------------- 265 (583)
Q Consensus 210 ~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---------------------- 265 (583)
+| ...|++|.+-|.+.|+++.|..+|++..+. .....-|+.+.++|+.-.
T Consensus 244 -tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~-----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~ 317 (835)
T KOG2047|consen 244 -TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT-----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDV 317 (835)
T ss_pred -cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhh
Confidence 23 457899999999999999999999998774 334455555555554321
Q ss_pred ChHHHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC------HHHHHHH
Q 007970 266 SMDRARQVLAEMTRIG-----------VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD------VVSYNIL 328 (583)
Q Consensus 266 ~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~l 328 (583)
+++-.+.-|+.+.... .+.++..|..-+. ...|+..+-...|.++.+. +.|- ...|..+
T Consensus 318 dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 318 DLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHH
Confidence 1233333444443321 1222333332222 2346677777777777643 2221 2468888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC----------CCC-----
Q 007970 329 IDGFILIDDSAGALTFFNEMRARGIAPT---KISYTTLMKAFALSSQPKLANKVFDEMLRDP----------RVK----- 390 (583)
Q Consensus 329 i~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~----- 390 (583)
...|-..|+.+.|..+|++..+...+-- ..+|......-.+..+++.|+.+.+....-. +.+
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 8899999999999999999887643321 3456666666667888999999888764311 111
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCC
Q 007970 391 -VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469 (583)
Q Consensus 391 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (583)
.+...|+.+++..-..|-++....+|+++.+..+. ++.........+-.+.-++++.++|++-+..+.
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk---------- 542 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFK---------- 542 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC----------
Confidence 12445677777777789999999999999987553 444444444455667778899999988776532
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHh---hhhHHHHHHHHHHHHHcCCCCC
Q 007970 470 DLPPPLKPDE-ELLDALADICVR---AAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 470 ~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
.|+. .+|+..+..+.+ .-..+.|..+|++.++ |-+|.
T Consensus 543 ------~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 543 ------WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred ------CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 4554 677776655543 2468999999999987 55544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-09 Score=110.17 Aligned_cols=232 Identities=15% Similarity=0.032 Sum_probs=170.7
Q ss_pred CCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHh
Q 007970 249 PDHVTYTTVVSALVK-----AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ---------QLQIDKAKELLREMAD 314 (583)
Q Consensus 249 ~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~ 314 (583)
.+...|...+.+-.. .+++++|..+|++..+.. |.+...+..+..+|.. .+++++|...+++.++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 345556556555322 234679999999999864 4455666666655542 2458899999999976
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 007970 315 DAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394 (583)
Q Consensus 315 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 394 (583)
.. +.+...+..+...+...|++++|+..|+++.+.+ +.+...+..+..++...|++++|...+++..+. .+.+..
T Consensus 333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~ 407 (553)
T PRK12370 333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAA 407 (553)
T ss_pred cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChh
Confidence 42 4467788888888899999999999999999874 445677888888999999999999999999873 222333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYP-NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
.+..++..+...|++++|++.++++.+.. .| +...+..+..++...|++++|...++++...
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---------------- 470 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---------------- 470 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc----------------
Confidence 34444555777899999999999988653 34 4455677788888999999999999887654
Q ss_pred CCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 474 PLKPDE-ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 474 ~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+. .....+...|...| ++|...++.+.+
T Consensus 471 --~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred --cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 5555 44455566777777 488888888754
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-07 Score=86.29 Aligned_cols=275 Identities=14% Similarity=0.107 Sum_probs=203.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 007970 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV-TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286 (583)
Q Consensus 208 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 286 (583)
.++.|+.....+..++...|+.++|+..|++.... .|+.. ....-.-.+.+.|+.+....+...+.... .-+.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-----dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta 300 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-----NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTA 300 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC-----ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcch
Confidence 45678888999999999999999999999998763 44322 22222233457788888888877776542 1223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
..|-.-.......++++.|+.+-++.++.. +.+...|-.-...+...+++++|.-.|+..+... +-+...|..|+.+
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHS 377 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHH
Confidence 333333344556788999999988887532 3445556555667788999999999999988762 4578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV-EGYCR-MGLVEEAKRIIERMKENGFYPNV-ATYGSLANGISLARK 443 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~ 443 (583)
|...|++.+|...-+...+ .++.+..+.+.+. ..+.- -.--++|.++++..+.. .|+- ...+.+...|...|.
T Consensus 378 YLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~ 453 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGP 453 (564)
T ss_pred HHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCc
Confidence 9999999999888877766 3445556655552 22222 22357899999888763 5653 456777778899999
Q ss_pred HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.++++.++++.... .||......|.+.+...+.+.+|+..|..... +.|+..
T Consensus 454 ~~D~i~LLe~~L~~------------------~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~ 505 (564)
T KOG1174|consen 454 TKDIIKLLEKHLII------------------FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSK 505 (564)
T ss_pred cchHHHHHHHHHhh------------------ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccch
Confidence 99999999999876 89999999999999999999999999999874 566653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-10 Score=99.50 Aligned_cols=235 Identities=15% Similarity=0.075 Sum_probs=199.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
|-.--+.+..+|.+.|.+.+|.+.|+..... .|-+.||..|-..|.+..+++.|+.++.+-++. +|-++....-
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g 295 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLG 295 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhh
Confidence 3334478999999999999999999998874 677889999999999999999999999998875 3556666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
..+.+-..++.++|.++|+...+.. +.++....++...|.-.++++-|+.+|+.+.+.|+. +...|+.+.-+|...+
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 8888999999999999999998754 346666777777888899999999999999999965 7888999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 372 QPKLANKVFDEMLRDPRVKVD--IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
++|-++.-|++.... -..|+ ...|-.+....+..|++..|.+.|+-.+..+ ..+...++.|.-.-.+.|++++|..
T Consensus 373 Q~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 373 QIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred chhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHH
Confidence 999999999988763 22233 4578888888889999999999999988763 4467789999888899999999999
Q ss_pred HHHHHHHH
Q 007970 450 LWKEIKER 457 (583)
Q Consensus 450 ~~~~~~~~ 457 (583)
++..+...
T Consensus 451 ll~~A~s~ 458 (478)
T KOG1129|consen 451 LLNAAKSV 458 (478)
T ss_pred HHHHhhhh
Confidence 99988765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-09 Score=102.65 Aligned_cols=245 Identities=20% Similarity=0.137 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC
Q 007970 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRI-----G-VPANR-ITYNILLKGYCQQLQIDKAKELLREMADDA-----KI 318 (583)
Q Consensus 251 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~ 318 (583)
..+...+...|...|+++.|..+++..++. | ..|.. ...+.+...|...+++.+|..+|++++... ..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555666777777777777777666543 1 01222 223346667777888888888777775421 11
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--
Q 007970 319 EPD-VVSYNILIDGFILIDDSAGALTFFNEMRA-----RGI-APT-KISYTTLMKAFALSSQPKLANKVFDEMLRDPR-- 388 (583)
Q Consensus 319 ~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 388 (583)
.|. ..+++.|..+|.+.|++++|..+++...+ .|. .|. ...++.+...|...+++++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 34566777778888888777776665433 111 122 23356667778888999999988887655211
Q ss_pred CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 389 VKV----DIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GF--YPN-VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 389 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+ -..+++.|...|...|++++|.+++++++.. +. .+. ...++.+...|.+.+++.+|.++|.+...-
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 2457899999999999999999999988642 11 222 456788889999999999999999987665
Q ss_pred hhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 458 CEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
.. ..| .-.|+. .+|..|+.+|.+.|++++|.++.+...
T Consensus 439 ~~--~~g---------~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MK--LCG---------PDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HH--HhC---------CCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 31 111 124554 899999999999999999999999885
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-07 Score=91.50 Aligned_cols=184 Identities=19% Similarity=0.181 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------------CCCCCHHH--HHHHHHHHH
Q 007970 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA-------------KIEPDVVS--YNILIDGFI 333 (583)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~~~--~~~li~~~~ 333 (583)
.+...+..+...|+|+ +++.|-..|....+..-...++....... .-+|+... +..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4555666666777543 45555556665555555555555543211 11344433 355566778
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007970 334 LIDDSAGALTFFNEMRARGIAPT-KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 334 ~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (583)
..|++++|++++++.+.+ .|+ +..|..-.+.+-+.|++.+|.+.++.... -..-|...-+-.+..+.+.|+.++|
T Consensus 206 ~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A 281 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEA 281 (517)
T ss_pred HhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHH
Confidence 899999999999998886 454 67778888889999999999999988876 3445666767778888899999999
Q ss_pred HHHHHHHHHCCCCCCH--------HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhh
Q 007970 413 KRIIERMKENGFYPNV--------ATYGSLANGISLARKPGEALLLWKEIKERCE 459 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 459 (583)
.+++......+..|-. ........+|.+.|++..|++.|..+.+.+.
T Consensus 282 ~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 282 EKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999888766543322 1123345678899999999998888877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.1e-10 Score=108.89 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=44.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHH
Q 007970 79 QLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI 146 (583)
Q Consensus 79 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 146 (583)
.++..+...|+.|+.+||..+|.-||..|+.+.|- +|.-|.-...+.+...|+.++......++.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~En 77 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAEN 77 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccC
Confidence 34555666677777777777777777777777666 77766666666666677777666666555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-08 Score=94.40 Aligned_cols=411 Identities=14% Similarity=0.084 Sum_probs=247.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHh
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 167 (583)
.++-|...|..+.-++...|+++.+.+.|++....- --....|..+...|...|.-..|..+++......++..+....
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 344466666666666777777777777777665542 2345566667777777777777777776655544222222223
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-----------CChhHHHHHH
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE-----------GRVSDTVRML 236 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~ 236 (583)
+.....+....+..++++++..+++..... ..-......+..+.-+|... ....++++.+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~---------~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGG---------QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhh---------hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 333344555666666666666666532100 00012234444444444321 2345778888
Q ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 007970 237 GAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA 316 (583)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 316 (583)
++..+.. +..|+...| +.--|+..++++.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+..+.+.
T Consensus 468 e~av~~d--~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162|consen 468 EEAVQFD--PTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHhcC--CCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Confidence 8887763 344444433 444567789999999999999998667889999999999999999999999999888764
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------CC-----CC--CHHHHHHHHHHHH
Q 007970 317 KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR---------------------GI-----AP--TKISYTTLMKAFA 368 (583)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------~~-----~p--~~~~~~~l~~~~~ 368 (583)
+.... ....-+..-..-++.++++.....+... |. .| ...++..+..-..
T Consensus 544 ~~N~~--l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a 621 (799)
T KOG4162|consen 544 GDNHV--LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA 621 (799)
T ss_pred hhhhh--hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH
Confidence 43111 1111111122245555555544433221 00 00 0112222211111
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCC--C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKV--D------IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 440 (583)
. +.+.+..-.. +.+ ..+.| + ...|......+.+.++.++|.-.+.+.... .+-....|......+..
T Consensus 622 ~--~~~~~~se~~-Lp~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 622 S--QLKSAGSELK-LPS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEV 696 (799)
T ss_pred h--hhhhcccccc-cCc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHH
Confidence 0 0000000000 111 11112 1 235666777888889999999888888764 34455667767777888
Q ss_pred cCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHH--HHHHHHHcCCCCCHHHH
Q 007970 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALE--IVACMEEHGIPPNKTKY 517 (583)
Q Consensus 441 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~ 517 (583)
.|..++|.+.|..+... .|++ .+..++..++.+.|+-.-|.. ++..+.+.+ +.+...|
T Consensus 697 ~~~~~EA~~af~~Al~l------------------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW 757 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALAL------------------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAW 757 (799)
T ss_pred HHhhHHHHHHHHHHHhc------------------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHH
Confidence 99999999999988854 8876 788999999999998888888 888888643 3345556
Q ss_pred HHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh
Q 007970 518 KKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWL 556 (583)
Q Consensus 518 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 556 (583)
-.+ .+++... |+.++|.+.|.
T Consensus 758 ~~L-G~v~k~~-----------------Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 758 YYL-GEVFKKL-----------------GDSKQAAECFQ 778 (799)
T ss_pred HHH-HHHHHHc-----------------cchHHHHHHHH
Confidence 655 5555554 88888877774
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.1e-07 Score=82.25 Aligned_cols=277 Identities=10% Similarity=0.039 Sum_probs=197.6
Q ss_pred HHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007970 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ 301 (583)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 301 (583)
+++-.++...|...+-.+.... ..+-|......+...+...|+.++|...|+.....+ +-+........-.+.+.|+
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~--~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~ 281 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNT--TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGG 281 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhc--cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccC
Confidence 3344555555555554444332 356678889999999999999999999999988754 3333344444555677888
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007970 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD 381 (583)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 381 (583)
++....+...+.... ......|-.-.......+++..|+.+-++.++.. +-+...+-.-...+...+++++|.-.|.
T Consensus 282 ~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR 358 (564)
T KOG1174|consen 282 CEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFR 358 (564)
T ss_pred HhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHH
Confidence 988888888776422 2233334444444556788999999998888764 2345555555567888999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHhHHHHHHHHHHHHhh
Q 007970 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA-NGIS-LARKPGEALLLWKEIKERCE 459 (583)
Q Consensus 382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~ 459 (583)
..+. --+-+..+|..|+.+|...|++.+|.-.-+..... +..+..++..+. ..|. ....-++|.+++++..+.
T Consensus 359 ~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~-- 433 (564)
T KOG1174|consen 359 TAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI-- 433 (564)
T ss_pred HHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--
Confidence 9876 34567899999999999999999999888877654 445666666552 3333 334457899999988754
Q ss_pred hhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhh
Q 007970 460 VKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528 (583)
Q Consensus 460 ~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 528 (583)
.|+. .....+...|...|..++++.+++.... ..||......+ .+++...
T Consensus 434 ----------------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~L-gd~~~A~ 484 (564)
T KOG1174|consen 434 ----------------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHL-GDIMRAQ 484 (564)
T ss_pred ----------------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHH-HHHHHHh
Confidence 8885 6777888999999999999999999874 56777655554 5554443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=80.47 Aligned_cols=50 Identities=36% Similarity=0.673 Sum_probs=37.7
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105 (583)
Q Consensus 56 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 105 (583)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-09 Score=96.15 Aligned_cols=232 Identities=13% Similarity=0.075 Sum_probs=190.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 007970 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334 (583)
Q Consensus 255 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 334 (583)
..+..+|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..+.+.|+.+|.+-++. .+-|+.....+...+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56778899999999999999988876 466778888999999999999999999888753 33444444556777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 414 (583)
.++.++|.++|+...+.. +.+.....++...|.-.++++.|+.+|.++.+- |+ -++..|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999988863 556777777888888899999999999999884 44 567788888889999999999999
Q ss_pred HHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHh
Q 007970 415 IIERMKENGFYPNV--ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVR 491 (583)
Q Consensus 415 ~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~ 491 (583)
-|++.+..--.|+. .+|-.+.......|++.-|.+.|+-.... .|++ ..++.|.-.-.+
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------------------d~~h~ealnNLavL~~r 441 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS------------------DAQHGEALNNLAVLAAR 441 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc------------------CcchHHHHHhHHHHHhh
Confidence 99998865444443 46777877788899999999999988876 6665 889999988899
Q ss_pred hhhHHHHHHHHHHHHHcCCCCC
Q 007970 492 AAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
.|+.++|..+++.... +.|+
T Consensus 442 ~G~i~~Arsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 442 SGDILGARSLLNAAKS--VMPD 461 (478)
T ss_pred cCchHHHHHHHHHhhh--hCcc
Confidence 9999999999999874 4454
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.5e-08 Score=84.51 Aligned_cols=332 Identities=14% Similarity=0.084 Sum_probs=215.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHH-HHHHHHH
Q 007970 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQ-SLVAAYV 139 (583)
Q Consensus 61 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 139 (583)
|++.+..+.+..++++|++++....+... .+......|..+|....++..|.+.|+++... .|...-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 55566666777788888888887777642 25666777777788888888888888887765 34444443 2345566
Q ss_pred cCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 140 GFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
+.+.+.+|+++...|.... .. ....+.+........+++..+..+.++... ..+..+.+..
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L--~~~~lqLqaAIkYse~Dl~g~rsLveQlp~----------------en~Ad~~in~ 150 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-AL--HSRVLQLQAAIKYSEGDLPGSRSLVEQLPS----------------ENEADGQINL 150 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HH--HHHHHHHHHHHhcccccCcchHHHHHhccC----------------CCccchhccc
Confidence 7778888888887776531 11 112223334445567888888888888762 1344455556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC-------------CH
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA-------------NR 286 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~ 286 (583)
.-...+.|++++|.+-|+...+.+ |..| ...|+..+.. .+.++.+.|++...++++.|++. |+
T Consensus 151 gCllykegqyEaAvqkFqaAlqvs--Gyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv 226 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVS--GYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV 226 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhc--CCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch
Confidence 666778999999999999998875 5655 4567766554 46789999999999999877542 11
Q ss_pred H---------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007970 287 I---------------TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351 (583)
Q Consensus 287 ~---------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 351 (583)
. .+|.-...+.+.++++.|.+.+..|........|+.|...+.-.-. .+++....+-++-+...
T Consensus 227 rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 227 RSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ 305 (459)
T ss_pred hcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc
Confidence 1 1222233356789999999999999766666678888777654322 34444444445555554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 352 GIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 352 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
+ +....||..++-.||+..-++.|-+++-+-....-.-.+...|+.|=......-..++|.+-+..+.
T Consensus 306 n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 306 N-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred C-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3 3446889999999999999999988875543210111234444433322233456777776666554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.7e-11 Score=77.51 Aligned_cols=50 Identities=40% Similarity=0.781 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440 (583)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 440 (583)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-08 Score=82.61 Aligned_cols=210 Identities=12% Similarity=0.072 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
.+...|.-.|...|+...|.+-+++..+. .+.+..+|..+...|.+.|+.+.|.+-|+...+.. +-+..+.|...
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhh
Confidence 35667888999999999999999999986 45567899999999999999999999999999875 56778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQP 373 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 373 (583)
..+|..|++++|...|++.+.......-..+|..+..+..+.|+.+.|...|++..+.. +....+...+.....+.|++
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccc
Confidence 99999999999999999998866555567789999999999999999999999998873 44567788888889999999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007970 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433 (583)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 433 (583)
-.|..+++..... ..++....-..|+.-.+.|+-+.+-++=..+... .|...-+..
T Consensus 190 ~~Ar~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 190 APARLYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred hHHHHHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 9999999999874 4488888888888889999999998888777764 466555543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-08 Score=99.10 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHh-----C--
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEF-----GA-KPDVLT-YNVMIKLCARASRKHLLVFVLERILEM-----G-- 123 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-- 123 (583)
..++..+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456667999999999999999999988764 21 233333 344667888889999999999888753 2
Q ss_pred CCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCC
Q 007970 124 ITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPP 203 (583)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 203 (583)
.+.-..+++.|..+|.+.|++++|...++...+. +++..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------------------------~~~~~----------- 317 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------------------------YEKLL----------- 317 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH------------------------------HHHhh-----------
Confidence 2223457778888899999999999988877652 22211
Q ss_pred CCCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007970 204 LLPKTFAPN-SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD----HVTYTTVVSALVKAGSMDRARQVLAEMT 278 (583)
Q Consensus 204 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 278 (583)
....|. ...++.++..++..+++++|..++....+.-..-..++ ..+++.|...|...|++++|.++++.++
T Consensus 318 ---~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 318 ---GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred ---ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 001233 23456777888888889998888876655421011111 2456666666666666666666666655
Q ss_pred hCC----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 279 RIG----V---PANRITYNILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 279 ~~~----~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
... . .-....++.+...|.+.+++++|.++|.+.
T Consensus 395 ~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 395 QILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 321 1 111233445555555555555555555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-07 Score=92.83 Aligned_cols=262 Identities=17% Similarity=0.181 Sum_probs=186.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (583)
-....+...|++++|++.+..-... +......+......+.+.|+.++|..++..+++.+ |.|...|..+..+..
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence 3445678899999999999887664 44445667778889999999999999999999987 556666777776663
Q ss_pred hc-----CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 298 QQ-----LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS-AGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 298 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
-. ...+...++|+++... -|.......+.-.+.....+ ..+..++..+...|+++ +|..+-..|....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPE 157 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChh
Confidence 22 2577788888888543 24444443333333332233 34566777788888664 5666666666555
Q ss_pred CHHHHHHHHHHHhcCC-------------CCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 007970 372 QPKLANKVFDEMLRDP-------------RVKVDIV--AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLA 435 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~ 435 (583)
..+-..+++....... .-+|... ++.-+...|...|++++|++++++.++. .|+ +..|..-.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Ka 235 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKA 235 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHH
Confidence 5555555555543210 1234443 4456678888999999999999999986 565 56788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC
Q 007970 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 510 (583)
+.+-+.|++.+|.+.++.+... .+.. .+-+-.+..+.+.|+.++|.+++..+.+.+.
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~L------------------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEAREL------------------DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhC------------------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 8999999999999999999865 4444 4445556778899999999999999976554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.3e-07 Score=87.09 Aligned_cols=409 Identities=11% Similarity=0.020 Sum_probs=247.2
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC-CCcchhHHHH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG-ITLCMTTFQS 133 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 133 (583)
.-|+..|..+.-+....|+++.+.+.|++....-+ -....|+.+...+...|.-..|+.+++...... .++++..+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 34677777777777777777777777777665322 345567777777777777777777776654432 1233344433
Q ss_pred HHHHHH-cCCChHHHHHHHHHHHhhhHHHHHHH--Hhhhhcccccc-----------CCCCCCCcHHHHHhhcCCCCCCC
Q 007970 134 LVAAYV-GFGDLEIAETIVQAMREGRRDVCKII--RELDLEDYSSE-----------NEGDDDDDDEVFEKLLPNSINPS 199 (583)
Q Consensus 134 l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----------~~~~~~~a~~~~~~~~~~~~~~~ 199 (583)
.-+.|. +.+.+++++.+-.++..........+ ......+.+|. +.....++.+.+++.+.-
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~----- 473 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF----- 473 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc-----
Confidence 334443 33555555555554444111111100 01111111111 112233455566665421
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007970 200 SEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279 (583)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 279 (583)
.+.|+.+...+.--|+..++++.|.+...+..+. +...+...|..+.-.+...+++..|+.+.+....
T Consensus 474 ---------d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l---~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 474 ---------DPTDPLVIFYLALQYAEQRQLTSALDYAREALAL---NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred ---------CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 1344555556666778889999999999999886 3456788899898889999999999999988775
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------CCCCHHHHHHHHHHH
Q 007970 280 IGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK---------------------------IEPDVVSYNILIDGF 332 (583)
Q Consensus 280 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~~li~~~ 332 (583)
.- +.|-.....-++.-...++.++++.....++.-.. ......++..+..-.
T Consensus 542 E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 542 EF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred Hh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 31 12222222222233335555555544433322100 000111222111111
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007970 333 ILIDDSAGALTFFNEMRARGIA--PT------KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404 (583)
Q Consensus 333 ~~~~~~~~a~~~~~~m~~~~~~--p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (583)
... ...+..-. .+....+. |+ ...|......+.+.+..++|...+.+..+ ..+.....|......+.
T Consensus 621 a~~--~~~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 621 ASQ--LKSAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLE 695 (799)
T ss_pred Hhh--hhhccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHH
Confidence 100 00000000 01111111 22 12345566677888999999988888876 45667778888888899
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHHH--HHHHHHHHhhhhhccccCCCCCCCCCCCC-HH
Q 007970 405 RMGLVEEAKRIIERMKENGFYP-NVATYGSLANGISLARKPGEALL--LWKEIKERCEVKKEGVNADSDLPPPLKPD-EE 480 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~ 480 (583)
..|.+++|.+.|...... .| ++....++...+...|+..-|.. ++..+.+. .|+ ..
T Consensus 696 ~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~------------------dp~n~e 755 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL------------------DPLNHE 755 (799)
T ss_pred HHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh------------------CCCCHH
Confidence 999999999999999875 44 45688899999999998887777 88888875 554 59
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 481 LLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 481 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|..+...+.+.|+.+.|..-|....+
T Consensus 756 aW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 756 AWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 999999999999999999999999865
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.5e-08 Score=89.53 Aligned_cols=220 Identities=15% Similarity=0.035 Sum_probs=156.5
Q ss_pred CChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 227 GRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306 (583)
Q Consensus 227 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 306 (583)
++.+.++.-+.++.........-....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567777777777754211111124567888888999999999999999999875 567889999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 007970 307 ELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386 (583)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 386 (583)
..|++.++.. +.+..+|..+..++...|++++|++.|+...+. .|+..........+...+++++|...|.+...
T Consensus 119 ~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 119 EAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 9999997642 335678888888899999999999999999886 34433222222234456789999999977654
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C--CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN---G--FYP-NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 387 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g--~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...++...+ . ......|+...+ +.+..+.+. . +.| ....|..+...+.+.|++++|+..|+++.+.
T Consensus 194 -~~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 194 -KLDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred -hCCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 223332222 2 233445665544 345554431 0 111 2357888999999999999999999999975
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.7e-08 Score=80.20 Aligned_cols=210 Identities=16% Similarity=0.070 Sum_probs=162.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
+...|.-.|...|++..|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..... +-+..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 34456667888888888888888887642 3445678888888888888888888888888763 34567778888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 447 (583)
|..|++++|...|+.............+|..+.-+..+.|+.+.|.+.|++.++.. +-...+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88889999999999888866665567788888888889999999999999988763 33456777888888889999999
Q ss_pred HHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 448 LLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
..+++..... ..++...+...|+.-.+.|+-+.+-++=..+.. ..|....+...
T Consensus 193 r~~~~~~~~~-----------------~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 193 RLYLERYQQR-----------------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHhc-----------------ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 9998888775 357888888888888888998888777666653 45666555443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-07 Score=92.31 Aligned_cols=307 Identities=12% Similarity=0.049 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCC-Ccch-hHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 007970 93 VLTYNVMIKLCARASRKHLLVFVLERILEMGI-TLCM-TTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170 (583)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 170 (583)
...|..+...+...++.+.+...+....+... .++. .........+...|++++|..+++...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------------ 73 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY------------ 73 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------------
Confidence 34566666677777888888777777665431 1222 122233445677899999999988887632
Q ss_pred ccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHhcccCC
Q 007970 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM----NEGRVSDTVRMLGAMRRQEDNA 246 (583)
Q Consensus 171 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~ 246 (583)
|.+..++.. ...+. ..+....+.+.+.... .
T Consensus 74 ---------------------------------------P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-----~ 108 (355)
T cd05804 74 ---------------------------------------PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA-----P 108 (355)
T ss_pred ---------------------------------------CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccC-----c
Confidence 233333332 22222 2344455555544311 1
Q ss_pred CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH--H
Q 007970 247 SHPD-HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV--V 323 (583)
Q Consensus 247 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~ 323 (583)
..|+ ......+...+...|++++|...++...+.. +.+...+..+...+...|++++|..++++........++. .
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 3333 3444556667788899999999999988875 5566778888888999999999999998886543222332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHhcCCCCCCCHHHH
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGI-APTKISY-T--TLMKAFALSSQPKLANKV---FDEMLRDPRVKVDIVAW 396 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~ 396 (583)
.|..+...+...|++++|..++++...... .+..... + .++.-+...|....+..+ .................
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 267 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFND 267 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHH
Confidence 455677788899999999999998764322 1112111 1 223333334433322222 22111100001122223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC------C--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 397 NMLVEGYCRMGLVEEAKRIIERMKENGFY------P--NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~------p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.....++...|+.+.|..++..+...... . ..........++...|++++|++.+......
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35677788899999999999998753211 0 1112222233467899999999999988875
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-06 Score=81.76 Aligned_cols=442 Identities=14% Similarity=0.081 Sum_probs=237.1
Q ss_pred CCCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 007970 6 YLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMH 85 (583)
Q Consensus 6 ~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 85 (583)
.+-|...+.+=+-++.+.++ |++|+.+.+.-... ..-++..| .-+-++.+.+..++|+..++-..
T Consensus 42 ~pdd~~a~~cKvValIq~~k--y~~ALk~ikk~~~~------------~~~~~~~f-EKAYc~Yrlnk~Dealk~~~~~~ 106 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDK--YEDALKLIKKNGAL------------LVINSFFF-EKAYCEYRLNKLDEALKTLKGLD 106 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhH--HHHHHHHHHhcchh------------hhcchhhH-HHHHHHHHcccHHHHHHHHhccc
Confidence 34456778888888888888 99998554433210 01112212 22334458899999999998332
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchh-HHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHH
Q 007970 86 EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMT-TFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164 (583)
Q Consensus 86 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 164 (583)
+ .+..+...-...+.+.+++++|+.+|+.+.+.+...-.. .-..++.+- -...+. +.+..+....+.
T Consensus 107 ~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q~v~~v~e~s--- 174 (652)
T KOG2376|consen 107 R----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQSVPEVPEDS--- 174 (652)
T ss_pred c----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHHhccCCCcch---
Confidence 2 234466666788889999999999999998765321111 111111110 000110 122221111100
Q ss_pred HHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 007970 165 IRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS-RIYTTLMKGYMNEGRVSDTVRMLGAMRRQE 243 (583)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 243 (583)
...+...+..+...|++.+|+++++.....+...-.....-..++.... ..-..|..++...|+..+|..++....+.
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~- 253 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR- 253 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-
Confidence 0111111223334566666666666552111110000000011111111 12345667788899999999999999886
Q ss_pred cCCCCCCHHHHHHHHHHHHH---cCC-hH-HHHHHHHHHHhCCC----------CCCHHHHH-HHHHHHHhcCCHHHHHH
Q 007970 244 DNASHPDHVTYTTVVSALVK---AGS-MD-RARQVLAEMTRIGV----------PANRITYN-ILLKGYCQQLQIDKAKE 307 (583)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~---~g~-~~-~a~~~~~~~~~~~~----------~~~~~~~~-~l~~~~~~~~~~~~A~~ 307 (583)
..+|........+-... ..+ ++ .++..++....... .......| .++.+| .+..+.+.+
T Consensus 254 ---~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~ 328 (652)
T KOG2376|consen 254 ---NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRE 328 (652)
T ss_pred ---cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHH
Confidence 45554333322222211 111 11 11112211111000 00111112 222222 455566666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHH-HHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----
Q 007970 308 LLREMADDAKIEPDVVSYNILID-GFIL-IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFD---- 381 (583)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~li~-~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---- 381 (583)
+...+ .+..|... +.+++. ++.. ...+.++.+++...-+....-........+......|+++.|.+++.
T Consensus 329 ~~a~l---p~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 329 LSASL---PGMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHhC---CccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 55544 23344433 334443 3322 23477888888877765322234556666777888999999999998
Q ss_pred ----HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHH----HHHHHhcCCHhHHHHHH
Q 007970 382 ----EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN--GFYPNVATYGSL----ANGISLARKPGEALLLW 451 (583)
Q Consensus 382 ----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l----~~~~~~~g~~~~a~~~~ 451 (583)
.+.+ +...+.+...++..+.+.++-+.|..++.+.... .-.+.......+ +..-.+.|+.++|..++
T Consensus 405 ~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 4433 2233455567777888888877787777776531 011222333333 33345679999999999
Q ss_pred HHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+++.+.. ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 482 eel~k~n-----------------~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 482 EELVKFN-----------------PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhC-----------------CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999852 66779999999999876 567777766654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.3e-07 Score=86.70 Aligned_cols=207 Identities=11% Similarity=0.036 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
...|..+...|...|+.++|...|++..+. .+.+...|+.+...+...|+++.|...|+...+.. +.+...+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~l 138 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456888889999999999999999999885 44568899999999999999999999999999865 4467788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 372 (583)
..++...|++++|.+.|+...+. .|+..........+...+++++|...|.+.... ..|+...+ .+. ....|+
T Consensus 139 g~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~ 211 (296)
T PRK11189 139 GIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGK 211 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccC
Confidence 99999999999999999999764 343322222222344567899999999776543 23333222 222 233555
Q ss_pred HHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007970 373 PKLANKVFDEMLRDPRVK-----VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGS 433 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 433 (583)
...+ +.+..+.+..... .....|..+...+.+.|++++|+..|++..+.+ +||..-+..
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 212 ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 5444 3445554321111 124578899999999999999999999999863 345444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-06 Score=82.62 Aligned_cols=309 Identities=9% Similarity=-0.031 Sum_probs=189.9
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVL-TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
....|..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|..++++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 466778888888888999998888877665432 12221 22223345667899999999999998874 445444442
Q ss_pred HHHHHcC----CChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 007970 135 VAAYVGF----GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210 (583)
Q Consensus 135 ~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (583)
...+... +....+.+.+.... ...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~---------------------------------------------------~~~~ 111 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWA---------------------------------------------------PENP 111 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccC---------------------------------------------------cCCC
Confidence 2223223 33333333332210 1113
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCH--H
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV-PANR--I 287 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~ 287 (583)
........+...+...|++++|.+.+++..+. .+.+...+..+..++...|++++|...++....... .++. .
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 34556667778899999999999999999986 445567788888999999999999999999887532 1232 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCC--CCCHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY-N--ILIDGFILIDDSAGALTF--FNEMRARGI--APTKISY 360 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~~~~~~a~~~--~~~m~~~~~--~p~~~~~ 360 (583)
.+..+...+...|++++|..++++........+..... + .++.-+...|....+.+. +........ .......
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 267 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFND 267 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHH
Confidence 45578888999999999999999985422211222211 1 222233333433322222 111111111 1111222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 361 TTLMKAFALSSQPKLANKVFDEMLRDPRV---K----VDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 361 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
.....++...|+.+.|..+++.+.....- . ......-....++...|++++|.+.+.+....
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566778889999999999888652111 0 01222222334456889999999999888753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-06 Score=80.11 Aligned_cols=407 Identities=14% Similarity=0.073 Sum_probs=246.8
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh
Q 007970 65 LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144 (583)
Q Consensus 65 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (583)
-++....|+++.|+.+|.+...... +|-+.|..-..+|+..|++++|++=-.+.++.. |.-+.-|+.+..++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 3455678999999999999988664 377778888889999999999988777776653 44467888999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-
Q 007970 145 EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY- 223 (583)
Q Consensus 145 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~- 223 (583)
++|+..|.+-.+.+++.......+...-......++.-.--.++..+.....+. . ......|..++..+
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~---------~-~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTN---------Y-SLSDPAYVKILEIIQ 156 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhh---------h-hhccHHHHHHHHHhh
Confidence 999999998888777665544433222111111122222222333222110000 0 00011122222111
Q ss_pred ---------HhcCChhHHHHHHHHHH-----hccc----CCCCC------------C----------HHHHHHHHHHHHH
Q 007970 224 ---------MNEGRVSDTVRMLGAMR-----RQED----NASHP------------D----------HVTYTTVVSALVK 263 (583)
Q Consensus 224 ---------~~~g~~~~A~~~~~~~~-----~~~~----~~~~~------------~----------~~~~~~ll~~~~~ 263 (583)
.+..++..|.-.+.... ..+. .+..| | ..-...+.++..+
T Consensus 157 ~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 157 KNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 11111111111111000 0000 00111 0 1124456667777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH-------HHHHHHHHhcC
Q 007970 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSY-------NILIDGFILID 336 (583)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-------~~li~~~~~~~ 336 (583)
..+++.+++.+....... -+..-++....+|...|.+..+...-....+..+ ....-| ..+..+|.+.+
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHH
Confidence 778888888888888765 4556667777788888887777766655544221 111122 22334566677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 007970 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI-VAWNMLVEGYCRMGLVEEAKRI 415 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 415 (583)
+++.++..|++.......|+. ..+....+++........- +.|.. .-...-...+.+.|++..|++.
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 888888888886665444332 1223334444444433321 22222 1122225677889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhh
Q 007970 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAF 494 (583)
Q Consensus 416 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~ 494 (583)
|.++++.. +-|...|....-+|.+.|.+..|+.-.+..++. .|+. ..|.-=..++....+
T Consensus 381 YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------------------~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 381 YTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL------------------DPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------------------CchHHHHHHHHHHHHHHHHH
Confidence 99999874 557888999999999999999999998888765 6664 566666677788889
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 495 FRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 495 ~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
|++|++.|++.++ +.|+...+...
T Consensus 442 ydkAleay~eale--~dp~~~e~~~~ 465 (539)
T KOG0548|consen 442 YDKALEAYQEALE--LDPSNAEAIDG 465 (539)
T ss_pred HHHHHHHHHHHHh--cCchhHHHHHH
Confidence 9999999999876 45666555433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.5e-08 Score=89.85 Aligned_cols=257 Identities=15% Similarity=0.133 Sum_probs=168.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
++-+.-.|++..++.-.+ .... ....+......+.+++...|+.+.++ .++.+.. +|.......+...+...
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~---~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~ 79 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSF---SPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSP 79 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTS---TCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTS
T ss_pred HHHHHHhhhHHHHHHHhh-ccCC---CchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCc
Confidence 344556788888886655 2222 12223455667788888899877544 4444433 67777776666655554
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 379 (583)
.+-+.+..-++..........+..........+...|++++|++++... .+.......+..+.+.++++.|.+.
T Consensus 80 ~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~ 153 (290)
T PF04733_consen 80 SDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKE 153 (290)
T ss_dssp TTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHH
Confidence 5666666666555432221123333333334566789999999888642 3667778888999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007970 380 FDEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455 (583)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (583)
++.|.+. ..|. +...+..+++. .+.+.+|.-+|+++.+. +.+++.+.+.+..++...|++++|.+++.+..
T Consensus 154 l~~~~~~---~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 154 LKNMQQI---DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHCC---SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHhc---CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999763 2343 33334444332 34689999999998765 67889999999999999999999999999876
Q ss_pred HHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCCCCCHH
Q 007970 456 ERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFF-RKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~ 515 (583)
.. .|+ ..++..++.+....|+. +.+.+++..+.. ..|+..
T Consensus 229 ~~------------------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 229 EK------------------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp CC-------------------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred Hh------------------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 54 444 47788888888888888 778888888875 345543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-06 Score=73.55 Aligned_cols=293 Identities=13% Similarity=0.074 Sum_probs=197.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhcccc
Q 007970 95 TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174 (583)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (583)
-+.+.+..+.+..++.+|++++..-.+.. +.+...++.|..+|....++..|...++.+-...|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~------------- 77 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPEL------------- 77 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHH-------------
Confidence 35667777888899999999998887774 4477888889999999999999999998887643322
Q ss_pred ccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHH
Q 007970 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT-TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253 (583)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (583)
.-|. --...+.+.+.+.+|+++...|... |+...
T Consensus 78 ---------------------------------------~qYrlY~AQSLY~A~i~ADALrV~~~~~D~------~~L~~ 112 (459)
T KOG4340|consen 78 ---------------------------------------EQYRLYQAQSLYKACIYADALRVAFLLLDN------PALHS 112 (459)
T ss_pred ---------------------------------------HHHHHHHHHHHHHhcccHHHHHHHHHhcCC------HHHHH
Confidence 2221 2234555678888888888877542 33222
Q ss_pred HHHHHHH--HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 007970 254 YTTVVSA--LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331 (583)
Q Consensus 254 ~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 331 (583)
-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|.+-|+...+-+|..|- ..|+.-+.
T Consensus 113 ~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALa- 187 (459)
T KOG4340|consen 113 RVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALA- 187 (459)
T ss_pred HHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHH-
Confidence 2222222 234678888888887766433 4444555555567889999999999988877776554 56666554
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-------------CHH--------HHHHHHH-------HHHhcCCHHHHHHHHHHH
Q 007970 332 FILIDDSAGALTFFNEMRARGIAP-------------TKI--------SYTTLMK-------AFALSSQPKLANKVFDEM 383 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p-------------~~~--------~~~~l~~-------~~~~~~~~~~a~~~~~~~ 383 (583)
..+.++++.|+++..+++++|++. |.. .-+.++. .+.+.++++.|.+.+..|
T Consensus 188 Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 188 HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 445688899999998888876542 211 1123333 345678888888888888
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 384 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
.-......|+.|...+.-. -..+++.+..+-++-++..+. -...||..++-.|++..-++.|-.++-+
T Consensus 268 PPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 268 PPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6655555677776655322 223456666666666665432 3467888888899988888887776653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.4e-06 Score=73.89 Aligned_cols=329 Identities=12% Similarity=0.089 Sum_probs=200.6
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHHHHhCCCcchhHH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMI---KLCARASRKHLLVFVLERILEMGITLCMTTF 131 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 131 (583)
+.++.-.-.+...+...|++.+|+.-|....+ -|+..|.++. ..|...|+...|+.=+.+.++. +||-..-
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A 108 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA 108 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH
Confidence 34566667777888888888888888888876 3344444433 4666777777777777777775 4553221
Q ss_pred H-HHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 007970 132 Q-SLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210 (583)
Q Consensus 132 ~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (583)
. .-...+.+.|.++.|..=|+.+....+..... .+..+++. ..
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~--------------------~eaqskl~----------------~~ 152 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV--------------------LEAQSKLA----------------LI 152 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh--------------------HHHHHHHH----------------hH
Confidence 1 22345677888888888888777644321111 11111111 00
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.........+..+.-.|+...|+.....+.+. .+-|...+..-..+|...|++..|+.-++...+.. ..+...+-
T Consensus 153 ~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi----~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~y 227 (504)
T KOG0624|consen 153 QEHWVLVQQLKSASGSGDCQNAIEMITHLLEI----QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHY 227 (504)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc----CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHH
Confidence 11122334555666778888888888888774 44466667777778888888888887777776654 33455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 370 (583)
-+-..+...|+.+.++..+++.++. .||...+-.. | ....+..+.++.|.+ ....
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLKl---dpdHK~Cf~~---Y---KklkKv~K~les~e~----------------~ie~ 282 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLKL---DPDHKLCFPF---Y---KKLKKVVKSLESAEQ----------------AIEE 282 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHcc---CcchhhHHHH---H---HHHHHHHHHHHHHHH----------------HHhh
Confidence 6667777788888888877777653 4554322111 1 112222222222222 2334
Q ss_pred CCHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHH
Q 007970 371 SQPKLANKVFDEMLRDPRV--KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANGISLARKPGEA 447 (583)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a 447 (583)
+++.++.+..+.+++...- +.....+..+-.++...|++.+|++.-.+.++. .|| +.++.--..+|.-...++.|
T Consensus 283 ~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 283 KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred hhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHH
Confidence 5566666666666652110 011223445556677778888888888888763 444 67777777888878888888
Q ss_pred HHHHHHHHHH
Q 007970 448 LLLWKEIKER 457 (583)
Q Consensus 448 ~~~~~~~~~~ 457 (583)
+.-|+.+.+.
T Consensus 361 I~dye~A~e~ 370 (504)
T KOG0624|consen 361 IHDYEKALEL 370 (504)
T ss_pred HHHHHHHHhc
Confidence 8888887765
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-05 Score=73.79 Aligned_cols=402 Identities=15% Similarity=0.123 Sum_probs=236.6
Q ss_pred HHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-HHHH
Q 007970 18 SRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD-VLTY 96 (583)
Q Consensus 18 ~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ 96 (583)
.+....|+ ++.|+..|-..+.. -|+|-+.|..-..+|+..|++++|++=-.+-.+. .|+ ...|
T Consensus 10 naa~s~~d--~~~ai~~~t~ai~l------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy 73 (539)
T KOG0548|consen 10 NAAFSSGD--FETAIRLFTEAIML------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGY 73 (539)
T ss_pred Hhhccccc--HHHHHHHHHHHHcc------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHH
Confidence 34455676 99999999888763 4668889999999999999999998877777764 455 5678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh---HHHHHHHHHHHh--------hhHHHHHHH
Q 007970 97 NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL---EIAETIVQAMRE--------GRRDVCKII 165 (583)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~--------~~~~~~~~~ 165 (583)
.-...++.-.|++++|+..|.+-++.. +.|...+..|..++...... -.--.++..+.. .++.+....
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 888889999999999999999988875 56777777787777211000 000000011000 001111111
Q ss_pred HhhhhccccccCCCCCCCcHHHHHhhc--------CCCCCC---CCCC-CCCCCCCCC--C----------HHHHHHHHH
Q 007970 166 RELDLEDYSSENEGDDDDDDEVFEKLL--------PNSINP---SSEP-PLLPKTFAP--N----------SRIYTTLMK 221 (583)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~~~~---~~~~-~~~~~~~~~--~----------~~~~~~li~ 221 (583)
..+...-.....-...+.-....-.+. ..+..+ ...+ .-...++++ + ..-.-.+.+
T Consensus 153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 153 EIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred HHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 000000000000000111111111111 000000 0000 000011111 1 113456778
Q ss_pred HHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH-------HHH
Q 007970 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI-------LLK 294 (583)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~ 294 (583)
+..+..++..|++-+...... .-+..-++....++...|.+..+...-....+.|.. ....++. +..
T Consensus 233 aaykkk~f~~a~q~y~~a~el-----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALEL-----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhH-----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 888889999999999998874 345555666777888889888888777777766522 2223333 333
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK-ISYTTLMKAFALSSQP 373 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~ 373 (583)
+|.+.++++.|+..|.+.+.... .|+. ..+....+++........-. .|.. .-...-...+.+.|++
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~R-t~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHR-TPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhc-CHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCH
Confidence 56667889999999988766432 2332 12233344444444443332 2221 1122224556777888
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
..|...|.++++ ..|.|...|.....+|.+.|.+..|++=.+...+.. ++....|..=..++....++++|++.|.+
T Consensus 375 ~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877 346677788888888888888888888777777652 22334444445556667778888888887
Q ss_pred HHHH
Q 007970 454 IKER 457 (583)
Q Consensus 454 ~~~~ 457 (583)
..+.
T Consensus 452 ale~ 455 (539)
T KOG0548|consen 452 ALEL 455 (539)
T ss_pred HHhc
Confidence 7765
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-06 Score=85.60 Aligned_cols=225 Identities=13% Similarity=0.091 Sum_probs=182.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 007970 208 TFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287 (583)
Q Consensus 208 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (583)
+++|-...-..+...+...|-..+|+.+|++.. .|.-++.+|...|+..+|..+..+..+. +|+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ 458 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPR 458 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcch
Confidence 345556666778889999999999999998764 3677888999999999999999988873 78999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
.|..+.+......-+++|.++++..... +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~A 529 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAA 529 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHH
Confidence 9999888887777899999998876431 11112222344789999999999877753 44677888888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 447 (583)
.+.+++..|.+.|..... ..+-+...||.+-.+|.+.++..+|...+.+..+.+ .-+...|...+-...+.|.+++|
T Consensus 530 Lqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 530 LQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence 899999999999999876 566778899999999999999999999999999876 44566777778888899999999
Q ss_pred HHHHHHHHHHh
Q 007970 448 LLLWKEIKERC 458 (583)
Q Consensus 448 ~~~~~~~~~~~ 458 (583)
++.+.++....
T Consensus 607 ~~A~~rll~~~ 617 (777)
T KOG1128|consen 607 IKAYHRLLDLR 617 (777)
T ss_pred HHHHHHHHHhh
Confidence 99999988753
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-06 Score=83.74 Aligned_cols=479 Identities=12% Similarity=-0.003 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 007970 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 11 ~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 90 (583)
..|..+...|+..-+ ...|...|++..+. .+.+..++......|+...+++.|..+.-...+....
T Consensus 493 paf~~LG~iYrd~~D--m~RA~kCf~KAFeL------------Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a 558 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDD--MKRAKKCFDKAFEL------------DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPA 558 (1238)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhcC------------CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchH
Confidence 366677777766654 77788888777653 3446778888999999999999998884443332110
Q ss_pred -CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007970 91 -PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169 (583)
Q Consensus 91 -~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 169 (583)
.-...|....-.|...++...++.-|+...... |-|...|..+..+|.+.|++..|.++|.+....+|.........
T Consensus 559 ~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~- 636 (1238)
T KOG1127|consen 559 FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKE- 636 (1238)
T ss_pred HHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHH-
Confidence 011223334445567788888998888888875 66888999999999999999999999988877766554332222
Q ss_pred hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-------Hhc
Q 007970 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAM-------RRQ 242 (583)
Q Consensus 170 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~ 242 (583)
+......|.+.++...+..++...-.. ..+...-..++-.+...+.-.|-...|...++.. ...
T Consensus 637 --A~~ecd~GkYkeald~l~~ii~~~s~e-------~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 637 --AVMECDNGKYKEALDALGLIIYAFSLE-------RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred --HHHHHHhhhHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 223345678888888887765221000 0000011223333333333333333333333332 222
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCChH------HHHHHH-HHHHhCCCCC--------------------CHHHHHHHHHH
Q 007970 243 EDNASHPDHVTYTTVVSALVKAGSMD------RARQVL-AEMTRIGVPA--------------------NRITYNILLKG 295 (583)
Q Consensus 243 ~~~~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~-~~~~~~~~~~--------------------~~~~~~~l~~~ 295 (583)
....+...|..+-.+|.-.-..+ ....++ .+....+..+ +..+|..|+..
T Consensus 708 ---~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 708 ---SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred ---hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 11223333433333332111111 000111 1111111111 11222222222
Q ss_pred HHh----c----CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 296 YCQ----Q----LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 296 ~~~----~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
|.+ . .+...|...+.+.++.. ..+..+|+.|... ...|.+.-+...|-+-.... +....+|..+.-.+
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeE
Confidence 222 1 12235555565554421 2344555555443 44455555555555544432 33455666666667
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCC
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK----ENGFYPNVATYGSLANGISLARK 443 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~p~~~~~~~l~~~~~~~g~ 443 (583)
.+..+++.|...|...+. -.+.+...|-.........|+.-++..+|..-- ..|--|+..-|-+........|+
T Consensus 861 l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 778888888888888765 455666777766666667788888888777622 22334555555555555566777
Q ss_pred HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 007970 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE-HGIPPNKTKYKKIY 521 (583)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~~~ 521 (583)
.++-+...+.+.........-. .-.|+ ...|.......-+.+.+++|......... ....-+...|+.+
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf--------~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynva- 1009 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYF--------LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVA- 1009 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHH--------hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-
Confidence 6665544433322210000000 11444 47888888888888988888888777631 1123344445543
Q ss_pred HHhhhhhhccc
Q 007970 522 VEMHSRMFTSK 532 (583)
Q Consensus 522 ~~~l~~~~~~~ 532 (583)
...++|.+.++
T Consensus 1010 k~~~gRL~lsl 1020 (1238)
T KOG1127|consen 1010 KPDAGRLELSL 1020 (1238)
T ss_pred hhhhhhhhhhh
Confidence 44555555554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-06 Score=88.20 Aligned_cols=230 Identities=10% Similarity=0.080 Sum_probs=185.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 007970 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD-----HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP 283 (583)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (583)
.|.+...|-..|......++.+.|.++.+++... +.+. ...|.++++.-...|.-+...++|+++.+..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t----IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-- 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKT----INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-- 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh----CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--
Confidence 3556788999999999999999999999999875 4333 2468888888888898899999999998863
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT---KISY 360 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~ 360 (583)
.....|..|...|.+.+++++|.++++.|.+.-+ .....|...+..+.+..+-+.|..++++..+. -|. ....
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFI 1603 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHH
Confidence 3456788999999999999999999999998654 56778999999999999999999999998875 233 3344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH
Q 007970 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA--TYGSLANGI 438 (583)
Q Consensus 361 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~ 438 (583)
.-.+..-.+.|+.+.+..+|+.+.. ..|.....|+.+|+.-.++|+.+.+..+|++....++.|-.. .|...+..=
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 4555566789999999999999987 456678899999999999999999999999999988776543 444444443
Q ss_pred HhcCCHhHHHHH
Q 007970 439 SLARKPGEALLL 450 (583)
Q Consensus 439 ~~~g~~~~a~~~ 450 (583)
-..|+-+.+..+
T Consensus 1682 k~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1682 KSHGDEKNVEYV 1693 (1710)
T ss_pred HhcCchhhHHHH
Confidence 445655544443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-05 Score=86.50 Aligned_cols=275 Identities=13% Similarity=0.031 Sum_probs=178.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC---CC--CHHHH
Q 007970 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD----HVTYTTVVSALVKAGSMDRARQVLAEMTRIGV---PA--NRITY 289 (583)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~ 289 (583)
+...+...|++++|...++...... ...+ ......+...+...|+++.|...+.+.....- .+ .....
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAEL---PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 4456678999999999999887631 1112 12345566667789999999999988774311 11 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc---CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHH
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADD---AKIE--P-DVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAP--TKIS 359 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~ 359 (583)
..+...+...|+++.|...+++.... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 56677788999999999998876542 1111 1 22334455556777899999999998875531 112 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVA--WNMLVEGYCRMGLVEEAKRIIERMKENGFYPN---VATY 431 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~ 431 (583)
+..+.......|++++|...+...... .+....... ....+..+...|+.+.|.+++........... ...+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 444566777899999999988887431 111111101 11122445568999999999877653211111 1113
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
..+..++...|++++|...++++....... +..++ ..++..+..++.+.|+.++|...+.+..+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~------------g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSL------------RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456667888999999999999988753210 12222 256677788999999999999999999763
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-05 Score=86.39 Aligned_cols=243 Identities=12% Similarity=0.107 Sum_probs=158.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCC--C-C
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD--HVTYTTVVSALVKAGSMDRARQVLAEMTRI----GVP--A-N 285 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~ 285 (583)
+.+.+...+...|++++|...+.+........-.+. ..++..+...+...|+++.|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 456677778889999999999988765321111111 234555667788899999999998886642 211 1 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-
Q 007970 286 RITYNILLKGYCQQLQIDKAKELLREMADDAK-IEP--DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP-TKISY- 360 (583)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~- 360 (583)
...+..+...+...|++++|...+.+...... ..+ ....+..+...+...|+++.|...+.......... ....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 23445566677788999999999887754211 112 23344455667788999999999998875421111 11111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-H
Q 007970 361 ----TTLMKAFALSSQPKLANKVFDEMLRDPRVKVD---IVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GFYPN-V 428 (583)
Q Consensus 361 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~ 428 (583)
...+..+...|+.+.|..++...... ..... ...+..+..++...|++++|...+.+.... |..++ .
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 11223445578999999998776542 11111 112456677888999999999999988652 32222 2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.+...+..++...|+.++|...+.++.+..
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 356666777889999999999999998863
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.8e-05 Score=74.01 Aligned_cols=230 Identities=14% Similarity=0.087 Sum_probs=115.4
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----------HHhC---------CC
Q 007970 65 LNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERI----------LEMG---------IT 125 (583)
Q Consensus 65 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------~~~~---------~~ 125 (583)
=..|-..|.+++|+++-+.=-...+ ..||..-..-+...++.+.|++.|++. +... -.
T Consensus 833 NKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 833 NKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 3344445555555555443222111 224444444455556666666655532 1111 01
Q ss_pred cchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCC
Q 007970 126 LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205 (583)
Q Consensus 126 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (583)
.+...|.--...+-..|+.+.|+.+|.....- ...-...+-+|+.++|.++-++
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~-----------fs~VrI~C~qGk~~kAa~iA~e--------------- 963 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDY-----------FSMVRIKCIQGKTDKAARIAEE--------------- 963 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhh-----------hhheeeEeeccCchHHHHHHHh---------------
Confidence 12233333333344456666666666555431 1112233455666666666655
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH-------------cC--ChHHH
Q 007970 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK-------------AG--SMDRA 270 (583)
Q Consensus 206 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g--~~~~a 270 (583)
..|..+...+.+.|-..|++.+|...|.+... |...|..|-. +| +.-.|
T Consensus 964 ----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa------------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 964 ----SGDKAACYHLARMYENDGDVVKAVKFFTRAQA------------FSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred ----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH------------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 35777888899999999999999999887654 2233333222 22 12223
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---------HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 271 RQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR---------EMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---------~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
-.+|++. |. .....+..|-+.|.+.+|+++-- -+.+......|+...+.....++...++++|
T Consensus 1028 ArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekA 1099 (1416)
T KOG3617|consen 1028 ARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKA 1099 (1416)
T ss_pred HHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHH
Confidence 3333321 11 11223345666777776665421 1222222234556666666666667777776
Q ss_pred HHHHHH
Q 007970 342 LTFFNE 347 (583)
Q Consensus 342 ~~~~~~ 347 (583)
..++-.
T Consensus 1100 V~lL~~ 1105 (1416)
T KOG3617|consen 1100 VNLLCL 1105 (1416)
T ss_pred HHHHHH
Confidence 665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-05 Score=77.95 Aligned_cols=423 Identities=11% Similarity=0.024 Sum_probs=244.9
Q ss_pred CcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHH
Q 007970 73 KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152 (583)
Q Consensus 73 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 152 (583)
+...|+..|-+..+... -=...|..|...|+...+...|...|....+.+ ..+......+...|.+..+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 35666666666555322 124568888888988888999999999999886 5677888899999999999999999944
Q ss_pred HHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 007970 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232 (583)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (583)
...+..+-.. ....+...+..|...++...+...|+..+ +..|.|...|..+..+|..+|++..|
T Consensus 551 ~~~qka~a~~-~k~nW~~rG~yyLea~n~h~aV~~fQsAL--------------R~dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 551 RAAQKAPAFA-CKENWVQRGPYYLEAHNLHGAVCEFQSAL--------------RTDPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHhhhchHHH-HHhhhhhccccccCccchhhHHHHHHHHh--------------cCCchhHHHHHHHHHHHHhcCceehH
Confidence 3333222111 12223337788889999999999999998 34477899999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCH--
Q 007970 233 VRMLGAMRRQEDNASHPDHVTYTTV--VSALVKAGSMDRARQVLAEMTRIG------VPANRITYNILLKGYCQQLQI-- 302 (583)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~-- 302 (583)
+++|.+... +.|+. +|... ...-+..|.+.++...+......- ..--..++..+...+.-.|-.
T Consensus 616 lKvF~kAs~-----LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 616 LKVFTKASL-----LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred HHhhhhhHh-----cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 999999876 45543 22222 223356788999988888776421 111122222222223223333
Q ss_pred -----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---cC--CH-HHHHHH-HHHHHHCCCCC---------------
Q 007970 303 -----DKAKELLREMADDAKIEPDVVSYNILIDGFIL---ID--DS-AGALTF-FNEMRARGIAP--------------- 355 (583)
Q Consensus 303 -----~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~--~~-~~a~~~-~~~m~~~~~~p--------------- 355 (583)
+++++.|.-.+... ...+...|-.+-.+|.- .. -+ .....+ +.+....+.-|
T Consensus 690 avd~~eksie~f~~~l~h~-~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHS-LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHh-hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHH
Confidence 33333333332211 01222233222222110 00 00 000001 11111111111
Q ss_pred -----CHHHHHHHHHHHHh----cC----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 356 -----TKISYTTLMKAFAL----SS----QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 356 -----~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
+..+|..++..|.+ .+ +...|...+++.++ -...+..+|+.|.-. ...|++.-|.--|-+-...
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s 845 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS 845 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc
Confidence 12222222222221 11 22356666666555 234456667666544 4456666666666555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHH
Q 007970 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEI 501 (583)
Q Consensus 423 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~ 501 (583)
.+....+|..+...+....+++-|...|...+. +.|+. ..|..........|+.-++..+
T Consensus 846 -ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS------------------LdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 846 -EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS------------------LDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred -cccchhheeccceeEEecccHHHhhHHHHhhhh------------------cCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 233556677777777777888888888887764 36654 6666666666677877777777
Q ss_pred HHHHHH----cCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 007970 502 VACMEE----HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLP 559 (583)
Q Consensus 502 ~~~~~~----~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 559 (583)
|..--+ .|-.|+-.-|.+. .+..... |.+++-+.-.++++
T Consensus 907 faHs~el~~~~gka~~f~Yw~c~-te~h~~N-----------------g~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 907 FAHSDELCSKEGKAKKFQYWLCA-TEIHLQN-----------------GNIEESINTARKIS 950 (1238)
T ss_pred HHhhHHhhccccccchhhHHHHH-HHHHHhc-----------------cchHHHHHHhhhhh
Confidence 777321 3444555444444 3333332 66666666666654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-07 Score=87.02 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHH
Q 007970 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV-EEAKRI 415 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~ 415 (583)
.+.+|.-+|+++... ..++..+.+.+..++...|++++|.+++..... ..+.+..+...++.+....|+. +.+.++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 344555555554332 334444455555555555555555555555443 2223334444444444444444 334444
Q ss_pred HHHHHH
Q 007970 416 IERMKE 421 (583)
Q Consensus 416 ~~~~~~ 421 (583)
+.++..
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-05 Score=77.92 Aligned_cols=344 Identities=13% Similarity=0.109 Sum_probs=218.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (583)
...-.+-+.++...|+-++|-++-+ .+..++ +.|+.|.+.|..-.|.+....-.. +..|......+..+
T Consensus 589 eklk~sy~q~l~dt~qd~ka~elk~--------sdgd~l-aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~a 657 (1636)
T KOG3616|consen 589 EKLKRSYLQALMDTGQDEKAAELKE--------SDGDGL-AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAA 657 (1636)
T ss_pred HHHHHHHHHHHHhcCchhhhhhhcc--------ccCccH-HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHH
Confidence 3344555667777787777655421 122222 357778888888777665432222 23355555555555
Q ss_pred HHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH-
Q 007970 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY- 216 (583)
Q Consensus 138 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (583)
+.+..-+++|-.+|+++...+..+. ++.+..-+-.|+++-.-.. |..++..
T Consensus 658 lik~elydkagdlfeki~d~dkale-----------~fkkgdaf~kaielarfaf-----------------p~evv~le 709 (1636)
T KOG3616|consen 658 LIKGELYDKAGDLFEKIHDFDKALE-----------CFKKGDAFGKAIELARFAF-----------------PEEVVKLE 709 (1636)
T ss_pred HHhhHHHHhhhhHHHHhhCHHHHHH-----------HHHcccHHHHHHHHHHhhC-----------------cHHHhhHH
Confidence 5555555666666655543211110 0111111122222222221 2222222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
......+...|+++.|...|-+... ....+.+......+.+|+.+++.+.... .-...|..+...|
T Consensus 710 e~wg~hl~~~~q~daainhfiea~~------------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhy 775 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEANC------------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHY 775 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhhh------------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHh
Confidence 2334556667888888777655432 2345667777889999999999888764 3345677888999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 376 (583)
...|+++.|+++|.+.- .++-.|..|.+.|+|+.|.++-.+.. |.......|..-..-+-..|++.+|
T Consensus 776 an~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 776 ANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred ccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhh
Confidence 99999999999996552 24556788999999999988865543 4444566676667778889999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
.++|-.+.. |+. .|..|-++|..+..+++..+-.-. .-..|...+..-|-..|+...|...|-++.+
T Consensus 844 eqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d 910 (1636)
T KOG3616|consen 844 EQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD 910 (1636)
T ss_pred hheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh
Confidence 999876643 553 467899999999999888764311 1134666777778889999998887766543
Q ss_pred HhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (583)
|.+.++.|...+.|++|.++-+.
T Consensus 911 -------------------------~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 911 -------------------------FKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred -------------------------HHHHHHHhhhhhhHHHHHHHHhc
Confidence 55667788888888888877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.3e-05 Score=66.29 Aligned_cols=310 Identities=15% Similarity=0.101 Sum_probs=166.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 007970 131 FQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210 (583)
Q Consensus 131 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (583)
.-.|.+.+...|++..|+.-|....+.+|+.-.. +...+..|...|+...|+.-+.+++. ..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~a---ifrRaT~yLAmGksk~al~Dl~rVle---------------lK 102 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQA---IFRRATVYLAMGKSKAALQDLSRVLE---------------LK 102 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHH---HHHHHHHHhhhcCCccchhhHHHHHh---------------cC
Confidence 3345555666677777777776666654432221 11223334444444455555554441 23
Q ss_pred CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007970 211 PNSR-IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289 (583)
Q Consensus 211 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (583)
||-. +-..-...+.+.|.++.|..-|+.+.+. .|+..+ ...+..+.--.++-. ..
T Consensus 103 pDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~-----~~s~~~---~~eaqskl~~~~e~~----------------~l 158 (504)
T KOG0624|consen 103 PDFMAARIQRGVVLLKQGELEQAEADFDQVLQH-----EPSNGL---VLEAQSKLALIQEHW----------------VL 158 (504)
T ss_pred ccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc-----CCCcch---hHHHHHHHHhHHHHH----------------HH
Confidence 4422 2233345566677777777777776664 121100 000000000000000 01
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
...+..+...|+...|+..+..+++.. +-|...|..-..+|...|++..|+.-++...+.. .-+..++--+-..+..
T Consensus 159 ~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 159 VQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHh
Confidence 112223344556666666665555321 3344555555556666666666665555554442 2233344444444555
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHH----HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HH---HH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVA----WNML---------VEGYCRMGLVEEAKRIIERMKENGFYPN--VA---TY 431 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---------i~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~---~~ 431 (583)
.|+.+.++....+..+ +.|+... |..| +....+.++|.++++..+...+. .|. .. .+
T Consensus 236 vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGF 310 (504)
T ss_pred hhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeee
Confidence 5555555555544443 2233211 1111 12345567888888888887765 343 22 23
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
..+-.++...|++.+|++...+.... .|+ ..++.--..+|.-..++++|+.-|++..+.
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~------------------d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDI------------------DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhc------------------CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44445567789999999999999864 776 588888999999999999999999999863
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7e-07 Score=85.15 Aligned_cols=223 Identities=15% Similarity=0.118 Sum_probs=171.6
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339 (583)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 339 (583)
-+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++.++.. +.+......|...|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHH
Confidence 3567888999999999888775 5677888888888888888888888888887532 446677888888888888888
Q ss_pred HHHHHHHHHHHCCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007970 340 GALTFFNEMRARGIA-----P---TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411 (583)
Q Consensus 340 ~a~~~~~~m~~~~~~-----p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 411 (583)
.|+..+..-+....+ + +...-.. ..+..........++|-.+....+..+|+.+...|.-.|--.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 888888876554211 0 0000000 11222233445666676666655656888889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHH
Q 007970 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICV 490 (583)
Q Consensus 412 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 490 (583)
|++.|+.++... +-|...||.|...++...+.++|+..|.++++. +|+. +....|.-.|.
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------------------qP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL------------------QPGYVRVRYNLGISCM 509 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------------------CCCeeeeehhhhhhhh
Confidence 999999999752 336678999999999999999999999999964 9986 78888999999
Q ss_pred hhhhHHHHHHHHHHHH
Q 007970 491 RAAFFRKALEIVACME 506 (583)
Q Consensus 491 ~~g~~~~A~~~~~~~~ 506 (583)
..|.|++|.+.|-..+
T Consensus 510 NlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 9999999999988864
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.1e-05 Score=75.53 Aligned_cols=365 Identities=15% Similarity=0.150 Sum_probs=202.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK--PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
|+..-+..+.++...+-..+-+++++++.-.+-. -+...-|.||-...+. +..+..+..+++..-+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------H
Confidence 5566667888999999999999999998743111 1122234444433333 5556667777665543 222 3
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH
Q 007970 135 VAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (583)
...+...+-+++|..+|++......-....+. .-+.++.|.+.-+++ ..+.
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie----------~i~~ldRA~efAe~~-------------------n~p~ 1105 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE----------NIGSLDRAYEFAERC-------------------NEPA 1105 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH----------HhhhHHHHHHHHHhh-------------------CChH
Confidence 44555667778888887765442222111111 123344455555543 3466
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
+|..+..+..+.|.+.+|++-|-+. .|+..|..+++.+.+.|.+++-.+.+....+..-.|. +-+.|+-
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyika---------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~ 1174 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKA---------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIF 1174 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhc---------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHH
Confidence 7888889988999988888776433 2556788889999999999988888887777654444 3456788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------------CCC
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR--------------------GIA 354 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------~~~ 354 (583)
+|++.+++.+.++++. -|+......+..-|...+.++.|.-+|...... .-.
T Consensus 1175 AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888877666541 244444444444455555555444443321100 001
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007970 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434 (583)
Q Consensus 355 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 434 (583)
.+..||-.+..+|...+.+..|.-. ..++-....-..-++..|-..|-+++.+.+++..+.. -......|..|
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlAQiC------GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQIC------GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTEL 1319 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHHHhc------CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHH
Confidence 1334444444444443333322111 0111223333445555566666666665555554321 01223344444
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.-.|++- ++++..+.++-...+ .| .--++++|-.+.-|.+..-++.+..+
T Consensus 1320 aiLYsky-kp~km~EHl~LFwsR-------------------vN---ipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1320 AILYSKY-KPEKMMEHLKLFWSR-------------------VN---IPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHhc-CHHHHHHHHHHHHHh-------------------cc---hHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444432 344444444433322 11 22357778777778877777766543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00016 Score=68.83 Aligned_cols=429 Identities=12% Similarity=0.114 Sum_probs=256.2
Q ss_pred CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 7 LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
+-|..+|+.+|+-+... . .+++...++++..- .|-....|..-|..-.+.++++...++|.....
T Consensus 17 P~di~sw~~lire~qt~-~--~~~~R~~YEq~~~~------------FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-P--IDKVRETYEQLVNV------------FPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred CccHHHHHHHHHHHccC-C--HHHHHHHHHHHhcc------------CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34788999999988665 5 99999999999863 555778999999999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CChhH----HHHHHHHHH-HhCCCc-chhHHHHHHHH---------HHcCCChHHHHHH
Q 007970 87 FGAKPDVLTYNVMIKLCARA-SRKHL----LVFVLERIL-EMGITL-CMTTFQSLVAA---------YVGFGDLEIAETI 150 (583)
Q Consensus 87 ~~~~~~~~~~~~li~~~~~~-~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~ 150 (583)
.- .+...|..-|.--.+. +.... ..+.|+-.. +.|+.+ +...|+.-+.. +....+++...++
T Consensus 82 kv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRri 159 (656)
T KOG1914|consen 82 KV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRI 159 (656)
T ss_pred HH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHH
Confidence 53 3566677666643332 33322 223333322 334222 22344444432 3344577777777
Q ss_pred HHHHHhhhH--------HHHHHHHhh---hhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCC----HHH
Q 007970 151 VQAMREGRR--------DVCKIIREL---DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN----SRI 215 (583)
Q Consensus 151 ~~~~~~~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 215 (583)
++++..... +...+-..+ ......-.....+..|.++++++.+---......+.++....++ ...
T Consensus 160 Yqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~ 239 (656)
T KOG1914|consen 160 YQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVEL 239 (656)
T ss_pred HHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHH
Confidence 777654321 111111111 11122233445555677777766422111111111111111111 112
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHHHHhcccCCCCCCHHH----HH-HHHHHHHHcCC-------hHHHHHHHH
Q 007970 216 YTTLMKGYMNEGRV--------SDTVRMLGAMRRQEDNASHPDHVT----YT-TVVSALVKAGS-------MDRARQVLA 275 (583)
Q Consensus 216 ~~~li~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~~~~----~~-~ll~~~~~~g~-------~~~a~~~~~ 275 (583)
|-.+|..=-..+-- ....=++++....- +..|+... |. ..-+.+...|+ -+++..+++
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l--~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yE 317 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYL--GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYE 317 (656)
T ss_pred HHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHH
Confidence 43344322111110 01111222222210 12232211 00 11112333343 456666676
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007970 276 EMTRIGVPANRITYNILLKGYCQQL---QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352 (583)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 352 (583)
.....-..-+..+|..+...--..- ..+.....+++++....+.|+ .+|-..+..-.+..-...|..+|.++.+.+
T Consensus 318 r~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~ 396 (656)
T KOG1914|consen 318 RAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDK 396 (656)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhcc
Confidence 6655333334444444433222222 366777778777665555555 467777787788888999999999999988
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--H
Q 007970 353 IAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV--A 429 (583)
Q Consensus 353 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~ 429 (583)
..+ +....++++..++ .++..-|..+|+.-.+.++ .++..-...+.-+...++-..|..+|++.+..++.|+. .
T Consensus 397 r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~ 473 (656)
T KOG1914|consen 397 RTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKE 473 (656)
T ss_pred CCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHH
Confidence 777 6777788888665 5788999999998887543 44555567788888999999999999999988666654 6
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.|..++.-=+.-|+...++++-++.....
T Consensus 474 Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 474 IWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 89999988889999999999988887664
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.8e-05 Score=74.27 Aligned_cols=109 Identities=18% Similarity=0.249 Sum_probs=68.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC
Q 007970 329 IDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL 408 (583)
Q Consensus 329 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 408 (583)
+.+-.....|.+|+.+++.+...+. -..-|..+...|+..|+++.|.++|.+.-. ++-.|..|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~~----------~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEADL----------FKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcch----------hHHHHHHHhcccc
Confidence 3444566777888888877776532 334566777788888888888888765422 3445677888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007970 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 451 (583)
|+.|.++-.+.. |.......|..-..-+-.+|++.+|.++|
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 888877766653 22223334444444455666666655554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-06 Score=81.75 Aligned_cols=259 Identities=15% Similarity=0.078 Sum_probs=187.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007970 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300 (583)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 300 (583)
.-+.+.|++.+|.=.|+...+. -+-+...|..|.......++-..|+..+.+..+.. +-|....-.|.-.|...|
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq----dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ----DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh----ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhh
Confidence 4566889999999999998886 45568899999999999999899999999999876 667888888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhc
Q 007970 301 QIDKAKELLREMADDAKIEPDVVSYNILI---------DGFILIDDSAGALTFFNEM-RARGIAPTKISYTTLMKAFALS 370 (583)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~~~~~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~ 370 (583)
.-..|+..++..+... |.. .|.... ..+.....+....++|-++ ...+..+|+.....|.-.|--.
T Consensus 368 ~q~~Al~~L~~Wi~~~---p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNK---PKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hHHHHHHHHHHHHHhC---ccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 9999999998886532 110 000000 0111122233444555444 4455457788888888888899
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHH
Q 007970 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV-ATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~ 449 (583)
|++++|...|+.+++ --|-|..+||.|...++...+.++|+..|++.++. .|.- .+.-.|.-+|...|.+++|.+
T Consensus 444 ~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred hHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 999999999999987 34567889999999999999999999999999984 6664 356668888999999999999
Q ss_pred HHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHH
Q 007970 450 LWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKAL 499 (583)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 499 (583)
.|-.++.-......+.. .-.++..+|.+|=.++.-.++.+-+.
T Consensus 520 hlL~AL~mq~ks~~~~~-------~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNK-------APMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred HHHHHHHhhhccccccc-------CCcchHHHHHHHHHHHHHcCCchHHH
Confidence 99887765321100000 01224456666555555555555333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-06 Score=83.43 Aligned_cols=242 Identities=12% Similarity=0.032 Sum_probs=190.9
Q ss_pred ccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHH
Q 007970 52 SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTF 131 (583)
Q Consensus 52 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 131 (583)
...+|-...-..+...+...|-...|..+|+.+.- |.-+|.+|...|+..+|..+..+..++ +|++..|
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ly 460 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLY 460 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhH
Confidence 45667777777889999999999999999998764 667888999999999999999888883 7899999
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCC
Q 007970 132 QSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAP 211 (583)
Q Consensus 132 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (583)
..+.+......-+++|.++++....+ ... ..+......++++++.+.|+.-+ .-.+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar------A~r---~~~~~~~~~~~fs~~~~hle~sl--------------~~npl 517 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR------AQR---SLALLILSNKDFSEADKHLERSL--------------EINPL 517 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH------HHH---hhccccccchhHHHHHHHHHHHh--------------hcCcc
Confidence 99999988888899999998876553 111 11223345788888999988766 22345
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
...+|..+..+..+.+++..|.+.|...... -+-+...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|..
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL----~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWEN 592 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL----EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWEN 592 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhc----CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeec
Confidence 6788999999999999999999999998873 33346789999999999999999999999999887 556677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 332 (583)
.+....+.|.+++|.+.+.++........|......++...
T Consensus 593 ymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 593 YMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 88888999999999999988876444344555555544433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-05 Score=73.66 Aligned_cols=216 Identities=10% Similarity=0.053 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHCCC
Q 007970 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLG-KPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 11 ~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~ 89 (583)
.++..+-..+...++ .++|+.+++++++. .|-+..+|+..-.++...| ++++++..++.+.+.+.
T Consensus 38 ~a~~~~ra~l~~~e~--serAL~lt~~aI~l------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np 103 (320)
T PLN02789 38 EAMDYFRAVYASDER--SPRALDLTADVIRL------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP 103 (320)
T ss_pred HHHHHHHHHHHcCCC--CHHHHHHHHHHHHH------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC
Confidence 356666677777777 89999999999884 3445678888877888888 67999999999998765
Q ss_pred CCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHh
Q 007970 90 KPDVLTYNVMIKLCARASRK--HLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 167 (583)
.+..+|+.....+.+.++. +.++++++.+++.+ +-|..+|+...-++...|+++++++.++.+.+.+
T Consensus 104 -knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--------- 172 (320)
T PLN02789 104 -KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--------- 172 (320)
T ss_pred -cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---------
Confidence 3556677666566666653 67888998999886 6688899999899999999999999999988743
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc---CCh----hHHHHHHHHHH
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE---GRV----SDTVRMLGAMR 240 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~A~~~~~~~~ 240 (583)
+.+..+|+....++.+. |.. +++++....+.
T Consensus 173 ------------------------------------------~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI 210 (320)
T PLN02789 173 ------------------------------------------VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAI 210 (320)
T ss_pred ------------------------------------------CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHH
Confidence 35566666665555444 222 45667776666
Q ss_pred hcccCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007970 241 RQEDNASHPDHVTYTTVVSALVKA----GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298 (583)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (583)
.. .+-|...|+.+...+... +...+|.+.+.+..+.+ +.+......|+..|+.
T Consensus 211 ~~----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 211 LA----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred Hh----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 64 445677788887777663 34456878877776654 4567777788888875
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-08 Score=58.26 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=31.8
Q ss_pred CCCCCchHHHHHHHHHHHhcCCCChhhhHHhHHHH
Q 007970 4 SGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVV 38 (583)
Q Consensus 4 ~g~~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~ 38 (583)
+|+.||+.|||.+|.+|++.|+ +++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~--~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGR--VDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCC--HHHHHHHHHhC
Confidence 5899999999999999999999 99999999987
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00041 Score=69.47 Aligned_cols=238 Identities=13% Similarity=0.136 Sum_probs=122.2
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
+-..|..+.+.|.+..+ .+-|...+-.|...-+-. .. ...--.|+ ..-..........|.+++|..+|.+-..
T Consensus 756 S~~vW~nmA~McVkT~R--LDVAkVClGhm~~aRgaR-Al-R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-- 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRR--LDVAKVCLGHMKNARGAR-AL-RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-- 828 (1416)
T ss_pred hhHHHHHHHHHhhhhcc--ccHHHHhhhhhhhhhhHH-HH-HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--
Confidence 34567888888888777 666655554443210000 00 00001121 1222233344577888888888887765
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhh
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 168 (583)
|..|=+.|-..|.+++|.++-+.-....+ ..||..-..-+-..++.+.|++.|++......++..++...
T Consensus 829 -------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 829 -------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred -------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 33344556667888888877665433221 23555555555666777778777776544322222221111
Q ss_pred hhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCC
Q 007970 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH 248 (583)
Q Consensus 169 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 248 (583)
..+++.|-+- ..|...|.-...-+-..|+.+.|+.+|...+.
T Consensus 899 -------------p~~~e~Yv~~------------------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------- 940 (1416)
T KOG3617|consen 899 -------------PKQIEQYVRR------------------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD------- 940 (1416)
T ss_pred -------------hHHHHHHHHh------------------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence 0111111110 12333333333334445666666666655543
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 249 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
|..++...+-.|+.++|-++-++ . -|...+-.|.+.|-..|++.+|...|.+.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44455555566666666665543 1 24445555666666666666666666554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-05 Score=81.99 Aligned_cols=223 Identities=12% Similarity=0.117 Sum_probs=175.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHH
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV---VSYNILIDGFILIDDSAGALT 343 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~ 343 (583)
.+.|..+-+.++.. |.+...|-..|......++.++|.+++++++..-++.... ..|.+++..-..-|.-+...+
T Consensus 1441 pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 33455544444442 5567788889999999999999999999998643332222 356666666666677888899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007970 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 423 (583)
+|+++.+.. -....|..|...|.+.+..++|.++++.|.++++ -....|..++..+.+..+-+.|.+++.++++.
T Consensus 1519 VFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~- 1593 (1710)
T KOG1070|consen 1519 VFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS- 1593 (1710)
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-
Confidence 999998752 2356788999999999999999999999999655 56788999999999999999999999999874
Q ss_pred CCCC---HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHH
Q 007970 424 FYPN---VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKAL 499 (583)
Q Consensus 424 ~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 499 (583)
-|. .....-.+..-.+.|+.+++..+|+..... .|- ...|+..++.=.+.|+.+.+.
T Consensus 1594 -lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a------------------yPKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1594 -LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA------------------YPKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred -cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh------------------CccchhHHHHHHHHHHccCCHHHHH
Confidence 344 334444455567899999999999999876 444 489999999999999999999
Q ss_pred HHHHHHHHcCCCCCHH
Q 007970 500 EIVACMEEHGIPPNKT 515 (583)
Q Consensus 500 ~~~~~~~~~~~~p~~~ 515 (583)
.+|+.....++.|-..
T Consensus 1655 ~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1655 DLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHHHHHHhcCCChhHh
Confidence 9999999888877654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0005 Score=70.42 Aligned_cols=197 Identities=9% Similarity=0.059 Sum_probs=107.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
+.||-+|++.++..+.++++ .-|+......+.+-|...+.++.|.-+|.. ..-|..|...+
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi----------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFI----------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTL 1230 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHh----------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHH
Confidence 34555555555555443332 234444455555555555555555555432 22345555556
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 297 CQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 376 (583)
...|+++.|...-++. .+..+|..+-.+|...+.+.-| +|-..++.....-...++..|...|-+++.
T Consensus 1231 V~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 6666666665544433 2455666666666655444322 233333344556677888889999999999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCC------CCHHHHHHHHHHHHhcCCHhHH
Q 007970 377 NKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFY------PNVATYGSLANGISLARKPGEA 447 (583)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~------p~~~~~~~l~~~~~~~g~~~~a 447 (583)
+.+++...- --....-.|+-|.-.|.+- ++++..+.++-.-.. +++ -....|+.++..|.+-..++.|
T Consensus 1299 Isl~Ea~LG--LERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1299 ISLLEAGLG--LERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHhhhc--hhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 888877642 1223455677777777765 466666655544322 110 0233455555555555555544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.6e-05 Score=69.75 Aligned_cols=130 Identities=8% Similarity=0.026 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG-SMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
++..+-..+...++.++|+.+..++.+. .+-+..+|+.--.++...| ++++++..++.+.+.. +.+..+|+...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~ 113 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHH
Confidence 4445555555666666666666666653 2222334444444444444 3556666666655543 33444444443
Q ss_pred HHHHhcCCH--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007970 294 KGYCQQLQI--DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351 (583)
Q Consensus 294 ~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 351 (583)
.++.+.+.. ++++.+++.+++.. +.+..+|+....++...|+++++++.+.++++.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333344432 34445554444321 234445555555555555555555555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-05 Score=68.31 Aligned_cols=160 Identities=18% Similarity=0.118 Sum_probs=123.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 007970 326 NILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR 405 (583)
Q Consensus 326 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 405 (583)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...|.+..+ .-++|..+|+.+..+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555666777777777777665433 234555666688888889999999999998877 667888999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHH
Q 007970 406 MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDAL 485 (583)
Q Consensus 406 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 485 (583)
.|+++.|..-|.+..+. ..-+...++.+...+.-.|+++.|..++...... -.-|..+-..|
T Consensus 147 ~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-----------------~~ad~~v~~NL 208 (257)
T COG5010 147 LGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-----------------PAADSRVRQNL 208 (257)
T ss_pred ccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-----------------CCCchHHHHHH
Confidence 99999999999988876 3346677888888888899999999998888764 12366777788
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 007970 486 ADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 486 ~~~~~~~g~~~~A~~~~~~~~ 506 (583)
..+-...|++++|..+...-.
T Consensus 209 Al~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 209 ALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHhhcCChHHHHhhccccc
Confidence 888888899999988877653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-05 Score=71.83 Aligned_cols=188 Identities=12% Similarity=-0.013 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-H
Q 007970 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR---ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV-V 323 (583)
Q Consensus 248 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~ 323 (583)
......+..+...+...|+++.|...++.+.... +.+. ..+..+..++...|++++|...++.+.+...-.+.. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 4456778888888899999999999999988753 2222 456778888999999999999999987654322322 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 007970 324 SYNILIDGFILI--------DDSAGALTFFNEMRARGIAPTK-ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394 (583)
Q Consensus 324 ~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 394 (583)
++..+..++... |++++|.+.|+.+... .|+. .....+..... . ..... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------H
Confidence 344445555543 6778888888888775 3332 22222211100 0 00000 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGF-YP-NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
....+...|.+.|++++|+..+.+..+..- .| ....+..+..++...|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112456678899999999999999987521 12 3467888999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.1e-05 Score=73.03 Aligned_cols=189 Identities=13% Similarity=0.001 Sum_probs=121.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK--ISY 360 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~ 360 (583)
.....+..+...+...|+++.|...|+++.......|. ..++..+..++...|++++|+..++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45566777777888888888888888888664321221 235667777888888888888888888775321111 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007970 361 TTLMKAFALS--------SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432 (583)
Q Consensus 361 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 432 (583)
..+..++... |++++|.+.|+.+.+. .+.+...+..+..... ... ... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HHHH
Confidence 4444445443 5677778888777763 2223223322211100 000 000 0112
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+...+...|++.+|+..++++.+.+. -.| ....+..+..++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYP---------------DTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCC---------------CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455678899999999999999998731 122 247888999999999999999999998864
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-05 Score=68.74 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=94.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HhH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI-SLARK--PGE 446 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~--~~~ 446 (583)
.++.+++...++...+ ..+.+...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 5566777777777766 456778888888888889999999999998888753 33666777777764 56676 588
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
|.++++++.+. .|+ ...+..+..++.+.|++++|...|+++.+.. +|+..
T Consensus 129 A~~~l~~al~~------------------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~ 179 (198)
T PRK10370 129 TREMIDKALAL------------------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVN 179 (198)
T ss_pred HHHHHHHHHHh------------------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcc
Confidence 99999988876 554 4777888888888999999999999987642 44443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.1e-08 Score=55.71 Aligned_cols=32 Identities=28% Similarity=0.686 Sum_probs=19.9
Q ss_pred cCCcCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 007970 53 DSKPDTAAYNAVLNACANLGKPKKFLQLFDQM 84 (583)
Q Consensus 53 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 84 (583)
|++||+.+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 35566666666666666666666666666655
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.8e-05 Score=79.29 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILI 329 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li 329 (583)
+...+..+..+|-+.|+.+++..+++++++.. +-|+.+.|.+...|... ++++|++++.+....
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence 34466667777777777777777777777766 56677777777777777 777777777766542
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 007970 330 DGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409 (583)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 409 (583)
+...+++.++.++|.++.... +-+...| ..+.+.+....+...-..++-.+-..|...++|
T Consensus 179 --~i~~kq~~~~~e~W~k~~~~~-~~d~d~f----------------~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 179 --FIKKKQYVGIEEIWSKLVHYN-SDDFDFF----------------LRIERKVLGHREFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred --HHhhhcchHHHHHHHHHHhcC-cccchHH----------------HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence 455566777777777776652 1111111 122222222112222333444555556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 410 EEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 410 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+++..+++.+++.. +-|......++.+|
T Consensus 240 ~~~i~iLK~iL~~~-~~n~~a~~~l~~~y 267 (906)
T PRK14720 240 DEVIYILKKILEHD-NKNNKAREELIRFY 267 (906)
T ss_pred hHHHHHHHHHHhcC-CcchhhHHHHHHHH
Confidence 66666666666542 22444455555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00012 Score=63.49 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=78.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL--- 369 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--- 369 (583)
...|++.+++++|++..... .+......=+..+.+..+.+-|.+.+++|.+-. +..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhc
Confidence 33455555555555554332 122222222233445555556666666665531 44455545554433
Q ss_pred -cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 007970 370 -SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448 (583)
Q Consensus 370 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 448 (583)
.+....|.-+|+++.+ ..+|+..+.+....++...|++++|..++++.+... .-++.++..++..-...|...++.
T Consensus 185 ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence 2345666666666654 355666666666666666677777777776666552 335556655555555555554433
Q ss_pred -HHHHHHH
Q 007970 449 -LLWKEIK 455 (583)
Q Consensus 449 -~~~~~~~ 455 (583)
+.+.++.
T Consensus 262 ~r~l~QLk 269 (299)
T KOG3081|consen 262 ERNLSQLK 269 (299)
T ss_pred HHHHHHHH
Confidence 3333433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00012 Score=63.38 Aligned_cols=250 Identities=13% Similarity=0.054 Sum_probs=164.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007970 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL 300 (583)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 300 (583)
+-+.-.|.+..++..-...... +.+...-..+-++|...|.+..... ++.... .|....+..+......-+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~-----~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS-----KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc-----cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcc
Confidence 4444567777776665555432 2445555566777877787654332 222222 445555555555555455
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007970 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVF 380 (583)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 380 (583)
+.+.-..-+.+.........+......-...|+..+++++|++...... +......=+..+.+..+.+.|.+.+
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444333333323333343333444456889999999999887621 2333444455677888999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 381 DEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
++|.+- .+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++.+..
T Consensus 161 k~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 161 KKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999873 456677767776665 46788999999999875 789999999999999999999999999999998
Q ss_pred HhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhH-HHHHHHHHHHHH
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFF-RKALEIVACMEE 507 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 507 (583)
+. .-+..++..++.+-...|.- +-..+.+..++.
T Consensus 236 kd-----------------~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 236 KD-----------------AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cc-----------------CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 73 33456777777666666654 445566666653
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00017 Score=75.39 Aligned_cols=170 Identities=6% Similarity=0.110 Sum_probs=116.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD-HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (583)
+.+...|..|+..|...+++++|.++.+..... .|+ ...|..+...+.+.++.+.+..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-----~P~~i~~yy~~G~l~~q~~~~~~~~lv--------------- 87 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-----HKKSISALYISGILSLSRRPLNDSNLL--------------- 87 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCcceehHHHHHHHHHhhcchhhhhhh---------------
Confidence 456889999999999999999999999977764 444 33444444466666665554443
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
.++.......++..+..+...+.. ...+..++..+..+|-+.|+.++|..+|+++.+.. +-+....+.+...|+
T Consensus 88 --~~l~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~a 161 (906)
T PRK14720 88 --NLIDSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYE 161 (906)
T ss_pred --hhhhhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 233344444455444444444433 13344577788888888899999999999888875 556788888888888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
.. +.++|.+++.++... +....++..+.++|.++...
T Consensus 162 e~-dL~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred Hh-hHHHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhc
Confidence 88 888888888877652 44455666666666666553
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.9e-05 Score=65.47 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=82.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHH
Q 007970 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF-ALSSQ--PKL 375 (583)
Q Consensus 299 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~--~~~ 375 (583)
.++.+++...++..++.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 455566666666655432 4566677777777777777777777777777653 33556666666653 45555 477
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007970 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT 430 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 430 (583)
|.+++++..+ ..+.+...+..+...+.+.|++++|+..|+++.+. .+|+..-
T Consensus 129 A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r 180 (198)
T PRK10370 129 TREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNR 180 (198)
T ss_pred HHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccH
Confidence 7777777776 34456677777777777778888888888777765 3454433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0018 Score=62.11 Aligned_cols=423 Identities=12% Similarity=0.065 Sum_probs=239.5
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
-|-|..+|+.||+-+... .++++.+.++++...- .-....|..-|..-....+++....+|.+.+..-. +...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 466899999999988666 8999999999998642 23467788999999999999999999999887643 4555655
Q ss_pred HHHHHHc-CCChHH----HHHHHHHHHh-hhHH------HHHHHHhhh--hccccccCCCCCCCcHHHHHhhcCCCCCCC
Q 007970 134 LVAAYVG-FGDLEI----AETIVQAMRE-GRRD------VCKIIRELD--LEDYSSENEGDDDDDDEVFEKLLPNSINPS 199 (583)
Q Consensus 134 l~~~~~~-~g~~~~----A~~~~~~~~~-~~~~------~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 199 (583)
-+.---+ .|+... ..+.|+-... .+.+ ..+.+..+. ...-.+..+.+.+..+++|++++..-...-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5543222 222222 2222322221 1111 111111111 011123344566777788888773211000
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHH-------HhcCChhHHHHHHHHHHhcccCCCCCCH---------------HHHHHH
Q 007970 200 SEPPLLPKTFAPNSRIYTTLMKGY-------MNEGRVSDTVRMLGAMRRQEDNASHPDH---------------VTYTTV 257 (583)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~li~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------------~~~~~l 257 (583)
. . +=.|-..|..=|+.. -+...+-.|.++++++...- .|..... ..|..+
T Consensus 172 E--k-----LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt-~GL~r~~~~vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 172 E--K-----LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLT-RGLNRNAPAVPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred H--H-----HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-hhhcccCCCCCCCCChHHHHHHHHHHHH
Confidence 0 0 000111121111111 12233445555555554320 0111111 113223
Q ss_pred HHHHHHcC------C--hHHHHHHHHHH-HhCCCCCCHHHH-----HHHHHHHHhcCC-------HHHHHHHHHHHHhcC
Q 007970 258 VSALVKAG------S--MDRARQVLAEM-TRIGVPANRITY-----NILLKGYCQQLQ-------IDKAKELLREMADDA 316 (583)
Q Consensus 258 l~~~~~~g------~--~~~a~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~~~-------~~~A~~~~~~~~~~~ 316 (583)
|.-=-..+ . -....-++++. .-.+..|+.... ...-+.+...|+ -+++..+++..+..
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~- 322 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG- 322 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH-
Confidence 32111100 0 01111222221 122222322111 011122333343 34555556555431
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 007970 317 KIEPDVVSYNILIDGFILID---DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393 (583)
Q Consensus 317 ~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 393 (583)
-...+..+|..+...-...- ..+.....++++...-..--..+|..+++...+..-++.|..+|.++.+......++
T Consensus 323 l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhV 402 (656)
T KOG1914|consen 323 LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHV 402 (656)
T ss_pred HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchh
Confidence 11223333443333211111 356666777776654333334678888998889999999999999998864444478
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
..+++++.-|| .++.+-|.++|+--++. +..++.--...+.-+...++-..+..+|++....
T Consensus 403 fVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s---------------- 464 (656)
T KOG1914|consen 403 FVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS---------------- 464 (656)
T ss_pred hHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc----------------
Confidence 88889988776 56789999999987764 4444555567788889999999999999999886
Q ss_pred CCCCCH--HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 474 PLKPDE--ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 474 ~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+.|+. .+|..++.-=..-|++..+.++-+.+..
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 346654 8999999988899999999999888753
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.8e-05 Score=63.71 Aligned_cols=108 Identities=9% Similarity=-0.058 Sum_probs=76.8
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 343 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
.++++..+. .|+. +......+...|++++|...|+.+.. -.+.+...|..+..++.+.|++++|+..|++....
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344454443 3332 44556667778888888888888776 34556777788888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 423 GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 423 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
. +.+...+..+..++...|++++|+..|+...+.
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 446677777777888888888888888888765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00018 Score=74.46 Aligned_cols=160 Identities=6% Similarity=0.013 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (583)
+.+..++..|..+..+.|++++|+.+++...+. .+-+......+..++.+.+++++|....+...... +-+....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 567889999999999999999999999999985 34446778888899999999999999999999875 5677888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
..+..++.+.|++++|..+|+++... .+.+..++..+..++...|+.++|...|++..+. ..|....|+..+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~---- 230 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV---- 230 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH----
Confidence 88899999999999999999999862 2344778888888999999999999999998876 3455566655543
Q ss_pred cCCHHHHHHHHHHH
Q 007970 370 SSQPKLANKVFDEM 383 (583)
Q Consensus 370 ~~~~~~a~~~~~~~ 383 (583)
+...-..+++.+
T Consensus 231 --~~~~~~~~~~~~ 242 (694)
T PRK15179 231 --DLNADLAALRRL 242 (694)
T ss_pred --HHHHHHHHHHHc
Confidence 233334455555
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0003 Score=60.56 Aligned_cols=188 Identities=13% Similarity=0.167 Sum_probs=135.1
Q ss_pred cCCcchHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH
Q 007970 71 LGKPKKFLQLFDQMHEF---G-AKPDVLT-YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE 145 (583)
Q Consensus 71 ~g~~~~A~~~~~~m~~~---~-~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 145 (583)
..+.++.++++.++... | ..++..+ |..++-+....|+.+.|..+++++...- +-+..+-..-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 34566777777766442 3 4455544 5566667777888899999998887763 333333333333344567777
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh
Q 007970 146 IAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN 225 (583)
Q Consensus 146 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 225 (583)
+|.++++.+.+.+ |.|.+++-.-+.+.-.
T Consensus 104 ~A~e~y~~lL~dd---------------------------------------------------pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 104 EAIEYYESLLEDD---------------------------------------------------PTDTVIRKRKLAILKA 132 (289)
T ss_pred hHHHHHHHHhccC---------------------------------------------------cchhHHHHHHHHHHHH
Confidence 7888777776632 4567777777777777
Q ss_pred cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL---QI 302 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~ 302 (583)
.|+..+|++-+....+. ...|...|.-+...|...|++++|.-+++++.-.. |.+...+..+...+.-.| ++
T Consensus 133 ~GK~l~aIk~ln~YL~~----F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK----FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred cCCcHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHH
Confidence 88888999999998886 78899999999999999999999999999998764 556666677776655444 46
Q ss_pred HHHHHHHHHHHhc
Q 007970 303 DKAKELLREMADD 315 (583)
Q Consensus 303 ~~A~~~~~~~~~~ 315 (583)
+.|.++|.+.++.
T Consensus 208 ~~arkyy~~alkl 220 (289)
T KOG3060|consen 208 ELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHh
Confidence 6788888887753
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00015 Score=75.03 Aligned_cols=160 Identities=9% Similarity=0.044 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007970 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT-KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397 (583)
Q Consensus 319 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (583)
..+...+..|.......|.+++|..+++...+. .|+ ......+...+.+.+++++|...++.... ..+.+.....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 456888888999999999999999999999886 454 56677788889999999999999999987 5566778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (583)
.+..++.+.|++++|.++|+++...+ +-+..++..+..++...|+.++|...|+++.+.. .|
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-----------------~~ 220 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-----------------GD 220 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-----------------Cc
Confidence 88999999999999999999999742 3347788889999999999999999999998863 44
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 478 DEELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 478 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
...-|+.+ .+++..-...++.+.
T Consensus 221 ~~~~~~~~------~~~~~~~~~~~~~~~ 243 (694)
T PRK15179 221 GARKLTRR------LVDLNADLAALRRLG 243 (694)
T ss_pred chHHHHHH------HHHHHHHHHHHHHcC
Confidence 44444433 345555566666663
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00092 Score=57.67 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.|++++|.++++.+.++ .+.|..++-.-+...-..|+.-+|++-+.+..+. +.-|...|..+...|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 44455555555555442 2444444444444444444444555555555443 44455555555555555555555555
Q ss_pred HHHHHH
Q 007970 450 LWKEIK 455 (583)
Q Consensus 450 ~~~~~~ 455 (583)
.+++++
T Consensus 176 ClEE~l 181 (289)
T KOG3060|consen 176 CLEELL 181 (289)
T ss_pred HHHHHH
Confidence 555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00016 Score=62.73 Aligned_cols=158 Identities=13% Similarity=-0.001 Sum_probs=113.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
..+-..+...|+-+.+..+...... ..+.|.......+....+.|++..|+..+++.... -++|...++.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHH
Confidence 5566667777777777777666542 22445556666777777888888888888887775 36677888888888888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.|+.+.|..-|.+..+ -.+-+...++.+...+.-.|+++.|..++......+ .-|..+-..+..+....|++++|..
T Consensus 147 ~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 147 LGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 8888888888877776 334455667777777777888888888888877653 3366677777777788888888877
Q ss_pred HHHH
Q 007970 450 LWKE 453 (583)
Q Consensus 450 ~~~~ 453 (583)
+...
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 6543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5e-05 Score=62.22 Aligned_cols=98 Identities=7% Similarity=-0.111 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
+..+..+...+...|++++|...|+..... .+.+...|..+..++...|++++|...|+...+.. +.+...+..+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~l 98 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMA----QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQT 98 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHH
Confidence 334555667777777777777777777764 34456677777777777777777777777777654 5566777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 007970 293 LKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
..++...|++++|...|+..++.
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777653
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0024 Score=60.66 Aligned_cols=118 Identities=18% Similarity=0.034 Sum_probs=75.9
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhH
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANGISLARKPGE 446 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 446 (583)
...|.++.|+..++.+.. ..+.|+..+......+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|++.+
T Consensus 317 ~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 317 YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 355677777777777665 34556666666667777777777777777777664 444 4455556666777777777
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
|+.+++..... .+-|...|..|..+|...|+..++.....++.
T Consensus 393 ai~~L~~~~~~-----------------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFN-----------------DPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhc-----------------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77777766654 13334667777777777776666666666554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.7e-05 Score=73.21 Aligned_cols=124 Identities=20% Similarity=0.158 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
....++..+...++++.|..+|+++.+. .|+ ....+++.+...++-.+|++++++.++. .+-+...+......|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 3455566666677788888888888763 244 3445677777777778888888888764 234566666666777
Q ss_pred HhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
...++++.|+.+.+++... .|+. .+|..|+.+|.+.|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~l------------------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL------------------SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh------------------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888765 6665 788888888888888888888888774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.4e-05 Score=61.26 Aligned_cols=98 Identities=15% Similarity=-0.016 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
......+...+...|++++|...|+.+.. ..+.+...+..+..++.+.|++++|..++++..+.+ +.+...+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 34455555666677777777777777765 234566677777777777777777777777776652 345566666677
Q ss_pred HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+...|++++|+..|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.001 Score=63.10 Aligned_cols=140 Identities=18% Similarity=0.230 Sum_probs=102.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPT-KISYTTLMKAFALSSQ 372 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~ 372 (583)
..+...|++++|+..++.++.. .+.|...+......+...++..+|.+.++.+... .|+ ......+..++.+.|+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 3455678888888888887754 2445566666677788888888888888888875 444 5556667778888888
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 007970 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 452 (583)
+.+|..+++.... ..+.|+..|..|.++|...|+..++..... ..+...|++++|+.++.
T Consensus 390 ~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 390 PQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLM 449 (484)
T ss_pred hHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHH
Confidence 8888888888776 567778888888888888887766654443 34556788888888888
Q ss_pred HHHHH
Q 007970 453 EIKER 457 (583)
Q Consensus 453 ~~~~~ 457 (583)
...+.
T Consensus 450 ~A~~~ 454 (484)
T COG4783 450 RASQQ 454 (484)
T ss_pred HHHHh
Confidence 88775
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.9e-05 Score=61.06 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=93.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.++.+... .+.+......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++..+..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555542 23345667778888999999999999999998863 4477888889999999999999999999988651
Q ss_pred hhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 459 EVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
+.+...+..+..++...|++++|.+.++...+ +.|+...+.
T Consensus 82 -----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 82 -----------------PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred -----------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 33457888888999999999999999999986 456665544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.5e-05 Score=60.88 Aligned_cols=126 Identities=19% Similarity=0.173 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD---IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV--ATYGS 433 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ 433 (583)
.|..++..+ ..++...+...++.+.+.+ +.+ ......+...+...|++++|...|+.+......|+. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444 3667777777777776632 222 233444556677778888888888877765422221 23344
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+...+...|++++|+..++..... ......+....++|.+.|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE------------------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566677778888888777553221 223345566677788888888888777653
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.016 Score=59.27 Aligned_cols=214 Identities=16% Similarity=0.147 Sum_probs=140.7
Q ss_pred hhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHH--HHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 28 PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA--CANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR 105 (583)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 105 (583)
+.+|+...+++.+. .|+.. |..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+|..
T Consensus 25 fkkal~~~~kllkk-------------~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d 89 (932)
T KOG2053|consen 25 FKKALAKLGKLLKK-------------HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRD 89 (932)
T ss_pred HHHHHHHHHHHHHH-------------CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHH
Confidence 88899999888885 34432 2333333 46999999999999988776654 88899999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHH----HHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCC
Q 007970 106 ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEI----AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181 (583)
Q Consensus 106 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (583)
.++.++|..+|++.... -|+......+..+|.+.+++.+ |.++++..++.
T Consensus 90 ~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~------------------------ 143 (932)
T KOG2053|consen 90 LGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR------------------------ 143 (932)
T ss_pred HhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc------------------------
Confidence 99999999999999887 4668888889999999887765 44444433332
Q ss_pred CCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHhcccCCCCCCH
Q 007970 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG----------RVSDTVRMLGAMRRQEDNASHPDH 251 (583)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~ 251 (583)
...+-++++.+.+.- -..-|.+.++.+.+.+ |..-+.
T Consensus 144 -------------------------------~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~--gk~~s~ 190 (932)
T KOG2053|consen 144 -------------------------------AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKK--GKIESE 190 (932)
T ss_pred -------------------------------cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC--CccchH
Confidence 111112222211110 1223555666666553 222222
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLA-EMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
.-...-...+...|++++|.+++. ...+.-.+.+...-+.-+..+...+++.+..++-.+++..
T Consensus 191 aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 191 AEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 223333344556788899988884 3334333445566667777888888888888888887764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=47.52 Aligned_cols=33 Identities=39% Similarity=0.805 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN 427 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~ 427 (583)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00026 Score=67.55 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.....|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|++++++.... .+-+...+..-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 33445666666777888888888888643 244 3445666677777777888888887765 23456666666667
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
|.+.++++.|+.+.+++.+ -.|.+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7788888888888888876 344556688888888888888888888877665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00055 Score=56.34 Aligned_cols=20 Identities=15% Similarity=-0.007 Sum_probs=8.6
Q ss_pred HHHHHHHhcCCHhHHHHHHH
Q 007970 433 SLANGISLARKPGEALLLWK 452 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~ 452 (583)
....+|...|++++|...|+
T Consensus 123 ~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 123 LLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 33334444444444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.1e-05 Score=47.57 Aligned_cols=33 Identities=33% Similarity=0.680 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 92 (583)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.2e-05 Score=47.07 Aligned_cols=32 Identities=59% Similarity=1.005 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKP 91 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 91 (583)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.2e-05 Score=45.85 Aligned_cols=33 Identities=27% Similarity=0.513 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP 426 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p 426 (583)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.037 Score=56.81 Aligned_cols=200 Identities=15% Similarity=0.129 Sum_probs=128.4
Q ss_pred HHHHHHHHH--hcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 007970 13 WSTVVSRLA--ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 13 ~~~li~~~~--~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 90 (583)
|..++.++. +.|+ .++|..+++..... .+.|..|...+-.+|-..++.++|..+|+...+..
T Consensus 44 ~a~vLkaLsl~r~gk--~~ea~~~Le~~~~~------------~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~-- 107 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGK--GDEALKLLEALYGL------------KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY-- 107 (932)
T ss_pred HHHHHHHHHHHHhcC--chhHHHHHhhhccC------------CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--
Confidence 344444443 4566 88998777776431 22378899999999999999999999999998854
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCC----------hHHHHHHHHHHHhhhHH
Q 007970 91 PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD----------LEIAETIVQAMREGRRD 160 (583)
Q Consensus 91 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~ 160 (583)
|+......+..+|.+.+++.+-.++--++.+. ++-++..|=++++.....-. ..-|.+.++.+.+...
T Consensus 108 P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g- 185 (932)
T KOG2053|consen 108 PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG- 185 (932)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-
Confidence 77888888889999988887655554455443 45566666666666554321 2235555555554431
Q ss_pred HHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 007970 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMR 240 (583)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 240 (583)
.........+........|+.++|..++..-...... ..+...-+.-+..+...+++.+..++-.++.
T Consensus 186 k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~------------~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 186 KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLT------------SANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcc------------ccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1111111222233344667888888888543322111 2344445566778888888888888888887
Q ss_pred hc
Q 007970 241 RQ 242 (583)
Q Consensus 241 ~~ 242 (583)
..
T Consensus 254 ~k 255 (932)
T KOG2053|consen 254 EK 255 (932)
T ss_pred Hh
Confidence 75
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.023 Score=53.65 Aligned_cols=126 Identities=16% Similarity=0.191 Sum_probs=83.0
Q ss_pred cCC-HHHHHHHHHHHhcCCCCCCCHHHHHHHH----HHHHHc---CCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 007970 370 SSQ-PKLANKVFDEMLRDPRVKVDIVAWNMLV----EGYCRM---GLVEEAKRIIERMKENGFYPN----VATYGSLANG 437 (583)
Q Consensus 370 ~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~ 437 (583)
.|. -++|.++++.+.+- .+-|..+-|.+. ..|.+. ..+..-+.+-+-+.+.|++|- ...-|.|..+
T Consensus 392 ~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred cCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 444 67788888877762 223444433332 122221 223334444444556777763 3455666655
Q ss_pred --HHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 438 --ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 438 --~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
+...|++.++.-.-..+.+ +.|+..+|..+.-+.....++++|+.++..+ +|+..
T Consensus 470 EyLysqgey~kc~~ys~WL~~------------------iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~ 526 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK------------------IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNER 526 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH------------------hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchh
Confidence 5678999999877666654 4999999999999999999999999999874 67777
Q ss_pred HHHHH
Q 007970 516 KYKKI 520 (583)
Q Consensus 516 ~~~~~ 520 (583)
.+.+-
T Consensus 527 ~~dsk 531 (549)
T PF07079_consen 527 MRDSK 531 (549)
T ss_pred hHHHH
Confidence 76654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00016 Score=63.98 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=43.7
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLD 483 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~ 483 (583)
+.+++.+|+..|.+.++. .+-|.+.|..-..+|.+.|.++.|++-.+..+.. .|.. .+|.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------------------Dp~yskay~ 153 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------------------DPHYSKAYG 153 (304)
T ss_pred HhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------------------ChHHHHHHH
Confidence 344455555555555443 1223344444444455555555555544444432 3433 4455
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007970 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 519 (583)
.|..+|...|++++|++.|++.++ +.|+..+|..
T Consensus 154 RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHH
Confidence 555555555555555555554442 4444444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00033 Score=67.19 Aligned_cols=124 Identities=17% Similarity=0.130 Sum_probs=97.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH
Q 007970 246 ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI--GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323 (583)
Q Consensus 246 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 323 (583)
+.+.+......+++.+....+++.+..++-..... ....-..|..++++.|...|..+.++.+++.=.. .|+-||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChh
Confidence 35566777788888888888888888888887764 2222334556899999999999999998877644 78889999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS 370 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 370 (583)
+++.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888777777777777777776654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=52.50 Aligned_cols=99 Identities=12% Similarity=0.007 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (583)
.++..++..+.+.|++++|.+.|..+.+. .|+ ...+..+..++...|++++|+..|+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---------- 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---------- 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC----------
Confidence 34566777788888999999999888764 232 34566677888888999999999998887521
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 470 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
+-......+..+..++.+.|++++|.+.++.+.+.
T Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 71 ----KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ----CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 00111356777778888889999999999988764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.029 Score=51.85 Aligned_cols=310 Identities=17% Similarity=0.120 Sum_probs=198.9
Q ss_pred CCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHH
Q 007970 210 APNSRIYTTLMKG--YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRI 287 (583)
Q Consensus 210 ~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (583)
..|....-.++.+ -.-.|+++.|.+-|+.|... ......-...|.-..-+.|+.+.|..+-+..-..- +--..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~W 189 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPW 189 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCch
Confidence 3454455555543 34579999999999999863 11112223333334456788888888888776643 33456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHH-HHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS--YNILIDGFI---LIDDSAGALTFFNEMRARGIAPTKI-SYT 361 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~p~~~-~~~ 361 (583)
....++...|..|+++.|+++++.-....-+.++..- -..|+.+-. -..+...|...-.+..+ +.|+.. .-.
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHH
Confidence 7888999999999999999999887665555565432 222222211 12345566666555554 455532 233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFYP-NVATYGSLANGIS 439 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~l~~~~~ 439 (583)
....++.+.|+..++-.+++.+-+. .|++..+...+ +.+.|+ .++.-+++.... ..+| +......+..+-.
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAl 340 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAAL 340 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 4456788999999999999999873 46666554433 345554 444444443321 1344 4567777788888
Q ss_pred hcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC-VRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
..|++..|..--+..... .|....|..|.+.- ...|+-.++...+-+..+. |....|.
T Consensus 341 da~e~~~ARa~Aeaa~r~------------------~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A---PrdPaW~ 399 (531)
T COG3898 341 DAGEFSAARAKAEAAARE------------------APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA---PRDPAWT 399 (531)
T ss_pred hccchHHHHHHHHHHhhh------------------CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC---CCCCccc
Confidence 899999988877776644 89999999888865 4559999999999888753 4444555
Q ss_pred HHHHHhhhhhhcccchh-HHHHHHHHHHHHHHHHHHH
Q 007970 519 KIYVEMHSRMFTSKHAS-QARQDRRRERKRAAEAFKF 554 (583)
Q Consensus 519 ~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~ 554 (583)
..-+....+.+.++-.. ...-+|+.+.|++..+++-
T Consensus 400 adg~vse~wapvspvtgRLdafewkap~~qL~~~~e~ 436 (531)
T COG3898 400 ADGVVSEAWAPVSPVTGRLDAFEWKAPTGQLAHPIED 436 (531)
T ss_pred ccCcccccccccCCchhhhhhhhhcCchhhhcCcccc
Confidence 55455566665555433 3334566666776555544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.6e-05 Score=54.43 Aligned_cols=80 Identities=23% Similarity=0.205 Sum_probs=53.9
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHH
Q 007970 406 MGLVEEAKRIIERMKENGFY-PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLD 483 (583)
Q Consensus 406 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~ 483 (583)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|+.++++ .+. .|+. ....
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------------------~~~~~~~~~ 62 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------------------DPSNPDIHY 62 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------------------HHCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------------------CCCCHHHHH
Confidence 47788888888888765221 2344555577888888888888888887 322 3332 4444
Q ss_pred HHHHHHHhhhhHHHHHHHHHH
Q 007970 484 ALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~ 504 (583)
.+..+|.+.|++++|++++++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhc
Confidence 557788888888888888875
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00038 Score=51.88 Aligned_cols=81 Identities=19% Similarity=0.253 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHHhCCCcchhH
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGA-KPDVLTYNVMIKLCARAS--------RKHLLVFVLERILEMGITLCMTT 130 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 130 (583)
+....|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445667777788999999999999999999 899999999999888663 23457789999999999999999
Q ss_pred HHHHHHHHHc
Q 007970 131 FQSLVAAYVG 140 (583)
Q Consensus 131 ~~~l~~~~~~ 140 (583)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00086 Score=50.30 Aligned_cols=94 Identities=22% Similarity=0.113 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCC
Q 007970 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475 (583)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (583)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++......
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------- 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD----------------- 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------------
Confidence 4455666677777777777777776642 2334556666667777777788877777776541
Q ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 476 KPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 476 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+.+..++..+..++...|++++|...++...+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 65 PDNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 22335666677777777888888777777653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.017 Score=47.47 Aligned_cols=144 Identities=16% Similarity=0.118 Sum_probs=106.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHH
Q 007970 353 IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG---FYPNVA 429 (583)
Q Consensus 353 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~ 429 (583)
..|+...-..|..++...|+..+|...|++.... -+..|......+.++....+++..|...++.+-+.. -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--
Confidence 4677777778888888899999999999888763 455677788888888888899999999888887642 2344
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
+...+.+++...|++.+|...|+.+... -|+...-......+.+.|+.+++..-+..+.+.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~------------------ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~- 222 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY------------------YPGPQARIYYAEMLAKQGRLREANAQYVAVVDT- 222 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh------------------CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-
Confidence 4455677788899999999999988876 677655555666777888888877766666442
Q ss_pred CCCCHHHHH
Q 007970 510 IPPNKTKYK 518 (583)
Q Consensus 510 ~~p~~~~~~ 518 (583)
+.-+..+|.
T Consensus 223 ~~r~~~H~r 231 (251)
T COG4700 223 AKRSRPHYR 231 (251)
T ss_pred HHhcchhHH
Confidence 334555665
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.036 Score=51.75 Aligned_cols=278 Identities=10% Similarity=0.034 Sum_probs=158.0
Q ss_pred HHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC-------CC
Q 007970 18 SRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG-------AK 90 (583)
Q Consensus 18 ~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~ 90 (583)
..+.+..+ +..|+..+...++. .+.++.-|..-+..+...|++++|.--.+.-.+.. .+
T Consensus 57 n~~yk~k~--Y~nal~~yt~Ai~~------------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r 122 (486)
T KOG0550|consen 57 NAFYKQKT--YGNALKNYTFAIDM------------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLR 122 (486)
T ss_pred chHHHHhh--HHHHHHHHHHHHHh------------CccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccc
Confidence 44445555 77888888777775 45556666666667777777777766555444321 11
Q ss_pred CCH--HHHHHHHHHHHhcCChh-----HHHHHHHHHHHhCC-CcchhHHHHH-HHHHHcCCChHHHHHHHHHHHhhhHHH
Q 007970 91 PDV--LTYNVMIKLCARASRKH-----LLVFVLERILEMGI-TLCMTTFQSL-VAAYVGFGDLEIAETIVQAMREGRRDV 161 (583)
Q Consensus 91 ~~~--~~~~~li~~~~~~~~~~-----~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~ 161 (583)
++. .....+|.+.....+.+ .++..++.+..... +|...++..| ..++.-.|+.++|...--.+...++..
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n 202 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATN 202 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccch
Confidence 111 11222333332222211 12222222222211 2333444433 345677889999888876666654443
Q ss_pred HHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007970 162 CKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRR 241 (583)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 241 (583)
.. .+.+.+.++...++.+.+...|++.+...-.-.....+. ..+.-...|..-..-..+.|++..|.+.|.+...
T Consensus 203 ~~---al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~--~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 203 AE---ALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS--MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred hH---HHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh--hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 33 344567777788999999999998873321100000000 0000011233334456678888888888888888
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007970 242 QEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
..+....++...|........+.|++++|+.--+...+.. +.-...+..-..++...++|++|.+-|++..+.
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7666677777777777777888888888888877777642 111122223334555677888888888877654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0017 Score=55.08 Aligned_cols=114 Identities=13% Similarity=0.019 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHH
Q 007970 374 KLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP--NVATYGSLANGISLARKPGEALLLW 451 (583)
Q Consensus 374 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~ 451 (583)
..+...+..+.+..+.......|..+...+...|++++|+..|++.......| ...++..+...+...|++++|+..+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444445553322333345667778888888899999999999987652222 2347888888899999999999999
Q ss_pred HHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHH-------hhhhHHHHHHHHHHH
Q 007970 452 KEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICV-------RAAFFRKALEIVACM 505 (583)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-------~~g~~~~A~~~~~~~ 505 (583)
+++... .|+ ...+..+..++. ..|++++|+..+++.
T Consensus 96 ~~Al~~------------------~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALER------------------NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHh------------------CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 988865 443 355555555555 778877666666554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00077 Score=64.72 Aligned_cols=123 Identities=11% Similarity=0.084 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHH
Q 007970 318 IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG--IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVA 395 (583)
Q Consensus 318 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 395 (583)
.+.+......++..+....+.+.+..++...+... ...-..|..++++.|...|..+.+..+++.=.. +|+-||..+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s 140 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFS 140 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhh
Confidence 34566667777777777777777877777776641 222234556788888888888888888776654 588888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441 (583)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 441 (583)
+|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888887776655555666655555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0011 Score=61.27 Aligned_cols=146 Identities=12% Similarity=0.202 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.+|..+++...+.+..+.|..+|.+..+......++....+++. |...++.+.|..+|+...+. .+.+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 35666777777777777777777777543322333333333332 22345666678888777665 45566777777777
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
+...++.+.|..+|++......... ....|...+..-.+.|+.+.+.++.+++.+. .|+...+..++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 7788888888888888876322222 2357888888888888888888888888764 344334443443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0078 Score=49.43 Aligned_cols=136 Identities=12% Similarity=0.073 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 007970 319 EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398 (583)
Q Consensus 319 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 398 (583)
.|+...--.|..+....|++.+|...|++...--..-|......+.++....+++..|...++++.+......++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 46666666777788888888888888888776545557777788888888888888888888888774322223444556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
+.+.+...|++.+|...|+...+. -|+...-......+.+.|+.+++..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 778888888888888888888874 67776666666667788877777665555544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00099 Score=49.94 Aligned_cols=91 Identities=21% Similarity=0.133 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 441 (583)
.+...+...|++++|..+++.+.+. .+.+...+..+..++...+++++|.+.++...... +.+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 3444444555555555555555442 22233444555555555556666666665555432 22334455555555555
Q ss_pred CCHhHHHHHHHHHH
Q 007970 442 RKPGEALLLWKEIK 455 (583)
Q Consensus 442 g~~~~a~~~~~~~~ 455 (583)
|++++|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666665555554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0015 Score=62.70 Aligned_cols=99 Identities=12% Similarity=0.080 Sum_probs=63.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-H
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-E 479 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~ 479 (583)
..+...|++++|+++|.++++.. +-+...|..+..+|...|++++|+..++++++. .|+ .
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------------------~P~~~ 70 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL------------------DPSLA 70 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CcCCH
Confidence 44556677777777777776642 334556666666677777777777777777654 443 3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
..|..+..+|...|++++|+..+++..+ +.|+.......
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~ 109 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 5666666777777777777777777664 44555444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0032 Score=50.92 Aligned_cols=101 Identities=7% Similarity=-0.072 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+......+..-+...|++++|.++|+.+... .+-+..-|..|.-++-..|++++|+..|....... +.++..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 3455666777788889999999999888874 34456677778888888899999999999888876 467778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAK 317 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~ 317 (583)
+..++...|+.+.|++.|+..+...+
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 88889999999999999988876443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0019 Score=51.06 Aligned_cols=98 Identities=13% Similarity=0.034 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRV-KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY--PNVATYGSLAN 436 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~ 436 (583)
+..+...+...|++++|...|..+.+.... +.....+..+..++.+.|+++.|.+.|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555556666666666666666542111 111334555666666677777777777766643111 11344555566
Q ss_pred HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (583)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666667777777777766665
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0089 Score=55.57 Aligned_cols=264 Identities=13% Similarity=0.025 Sum_probs=162.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (583)
.......+.+..++.+|+..+....+. .+.+..-|..-...+...|+++.+.--.+.-.+.. +-......-.-++
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c 126 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDM----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQC 126 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHh----CccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhh
Confidence 344556777888899999999998885 34445556555666666677777766555544322 1111122223333
Q ss_pred HHhcCCHHHHHHHHH---------------HHHhcCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007970 296 YCQQLQIDKAKELLR---------------EMADDAKIEPDVVSYNILI-DGFILIDDSAGALTFFNEMRARGIAPTKIS 359 (583)
Q Consensus 296 ~~~~~~~~~A~~~~~---------------~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 359 (583)
+...++..+|.+.++ .+.....-+|...+|..+- .++...+++++|...--...+.. . ...
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~--~n~ 203 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A--TNA 203 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c--chh
Confidence 333444444443332 2211111123344454443 35567889998888777766653 1 122
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHhcCCCCCCCHHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHHC--
Q 007970 360 YTTLMK--AFALSSQPKLANKVFDEMLRDPRVKVDIVA-------------WNMLVEGYCRMGLVEEAKRIIERMKEN-- 422 (583)
Q Consensus 360 ~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A~~~~~~~~~~-- 422 (583)
+..+++ ++-..++.+.|...|++.++. .|+... +..=..-..+.|++..|.+.|.+.+..
T Consensus 204 ~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 204 EALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred HHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 333333 344567888899988888762 333221 111122345789999999999999853
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHH
Q 007970 423 -GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALE 500 (583)
Q Consensus 423 -g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 500 (583)
++.|+...|.....+..+.|+.++|+.-.+...+. .|.. ..+..-..++.-.++|++|.+
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------------------D~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------------------DSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777888999999999998888743 4432 455555678888899999999
Q ss_pred HHHHHHHc
Q 007970 501 IVACMEEH 508 (583)
Q Consensus 501 ~~~~~~~~ 508 (583)
-+++..+.
T Consensus 343 d~~~a~q~ 350 (486)
T KOG0550|consen 343 DYEKAMQL 350 (486)
T ss_pred HHHHHHhh
Confidence 99998653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0015 Score=55.42 Aligned_cols=96 Identities=15% Similarity=-0.016 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007970 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAP--TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399 (583)
Q Consensus 322 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 399 (583)
...|..+...+...|++++|+..|+........+ ...++..+...+...|++++|...++...+. .+....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 3445555556666677777777777665542221 1235666666677777777777777776652 23334445555
Q ss_pred HHHHH-------HcCCHHHHHHHHHHH
Q 007970 400 VEGYC-------RMGLVEEAKRIIERM 419 (583)
Q Consensus 400 i~~~~-------~~g~~~~A~~~~~~~ 419 (583)
...+. ..|+++.|+..+++.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 55555 666766555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00014 Score=53.26 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=61.4
Q ss_pred cCCcchHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHH
Q 007970 71 LGKPKKFLQLFDQMHEFGAK-PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAET 149 (583)
Q Consensus 71 ~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 149 (583)
.|+++.|+.+++.+.+.... ++...+-.+..++.+.|++++|..+++. .+.+ +.+......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999886542 2455566688999999999999999988 4333 2234555566899999999999999
Q ss_pred HHHH
Q 007970 150 IVQA 153 (583)
Q Consensus 150 ~~~~ 153 (583)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0023 Score=61.42 Aligned_cols=89 Identities=9% Similarity=-0.035 Sum_probs=52.2
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 007970 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 445 (583)
.+...|++++|+..|.++++ ..+.+...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34455666666666666655 233445556666666666666666666666666542 224455555666666666666
Q ss_pred HHHHHHHHHHHH
Q 007970 446 EALLLWKEIKER 457 (583)
Q Consensus 446 ~a~~~~~~~~~~ 457 (583)
+|+..|+++.+.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.004 Score=53.01 Aligned_cols=65 Identities=14% Similarity=-0.068 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN--VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+..+...+...|++++|...|++..+....+. ...+..+..++...|++++|+..++++.+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34455555666666666666666666654321111 245555666666666666666666666654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0045 Score=52.68 Aligned_cols=85 Identities=8% Similarity=-0.044 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.+..+...+...|++++|...|++.++.....++ ...+..+...+...|++++|...+.+..... +-+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444555555555666666555555432111111 2344455555555555555555555554431 1123333344444
Q ss_pred HHhcCCH
Q 007970 367 FALSSQP 373 (583)
Q Consensus 367 ~~~~~~~ 373 (583)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 4444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00011 Score=41.81 Aligned_cols=30 Identities=43% Similarity=0.955 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGF 424 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 424 (583)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 578888888888888888888888877653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.006 Score=49.41 Aligned_cols=96 Identities=13% Similarity=-0.051 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 439 (583)
.-.+..-+...|++++|..+|+.+.. -.+.+..-|..|..++-..|++++|+..|....... +-|+..+-.+..++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33444556788999999999998876 445677888899999999999999999999998765 357778888899999
Q ss_pred hcCCHhHHHHHHHHHHHHh
Q 007970 440 LARKPGEALLLWKEIKERC 458 (583)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~ 458 (583)
..|+.+.|.+.|+..+..+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999888764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=7.1e-05 Score=42.55 Aligned_cols=29 Identities=31% Similarity=0.691 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0027 Score=58.66 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL-SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 401 (583)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|..+|+...+ .++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467888888888888999999999998653 3345556555555334 5677779999999998 46778899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 402 GYCRMGLVEEAKRIIERMKENGFYPNV---ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+.+.++.+.|..+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999875 43333 48888888888899999999999999886
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0078 Score=60.52 Aligned_cols=143 Identities=11% Similarity=-0.010 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHH
Q 007970 353 IAPTKISYTTLMKAFALSS-----QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM--------GLVEEAKRIIERM 419 (583)
Q Consensus 353 ~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~ 419 (583)
.+.+...|...+++..... ....|..+|++..+ ..+-....|..+..++... .+...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4455666666666543322 25567777777765 2233334444443333222 1123334444443
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHH
Q 007970 420 KEN-GFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKA 498 (583)
Q Consensus 420 ~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 498 (583)
... ....+...+..+.-.+...|++++|...++++.+. .|+...|..+..+|...|+.++|
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L------------------~ps~~a~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL------------------EMSWLNYVLLGKVYELKGDNRLA 472 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------CCCHHHHHHHHHHHHHcCCHHHH
Confidence 332 12334556666655566678888888888888764 67777777888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHH
Q 007970 499 LEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 499 ~~~~~~~~~~~~~p~~~~~ 517 (583)
...+++..+ +.|...+|
T Consensus 473 ~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 473 ADAYSTAFN--LRPGENTL 489 (517)
T ss_pred HHHHHHHHh--cCCCCchH
Confidence 888887764 45555554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.03 Score=52.00 Aligned_cols=29 Identities=10% Similarity=0.134 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
...|......|-..|++++|.+.|....+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 44677777778788888888888877644
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.012 Score=54.63 Aligned_cols=178 Identities=11% Similarity=0.154 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC--
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF-- 87 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 87 (583)
...|......|...++ +++|...|.+......+..+ ...-...|.....+|.+. ++++|+..++.....
T Consensus 35 a~~y~~Aa~~fk~~~~--~~~A~~ay~kAa~~~~~~~~------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~ 105 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKD--WEKAAEAYEKAADCYEKLGD------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR 105 (282)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH
Confidence 4467777788888887 99999999888765443221 111234555656665444 888888888876543
Q ss_pred --CCCCC--HHHHHHHHHHHHhc-CChhHHHHHHHHHHHh----CCC-cchhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 007970 88 --GAKPD--VLTYNVMIKLCARA-SRKHLLVFVLERILEM----GIT-LCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157 (583)
Q Consensus 88 --~~~~~--~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 157 (583)
| .|+ ...+..+...|... |+++.|++.|++..+. +.+ .-...+..+...+.+.|++++|.++|+++...
T Consensus 106 ~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 106 EAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3 222 23466667777777 7888888888877653 211 11345566777888888888888888877652
Q ss_pred hHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHhcCChhHHHHHH
Q 007970 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR-IYTTLMKGYMNEGRVSDTVRML 236 (583)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 236 (583)
..+. .....+.. .+...+-++...|++..|.+.|
T Consensus 185 ~l~~---------------------------------------------~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 185 CLEN---------------------------------------------NLLKYSAKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp CCCH---------------------------------------------CTTGHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hhcc---------------------------------------------cccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1000 00012222 3445556777889999999999
Q ss_pred HHHHhc
Q 007970 237 GAMRRQ 242 (583)
Q Consensus 237 ~~~~~~ 242 (583)
+.....
T Consensus 220 ~~~~~~ 225 (282)
T PF14938_consen 220 ERYCSQ 225 (282)
T ss_dssp HHHGTT
T ss_pred HHHHhh
Confidence 998765
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.15 Score=50.96 Aligned_cols=207 Identities=8% Similarity=0.042 Sum_probs=105.4
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC-CCCCCHHHHHHHH-------HHHHhcCChhHHHHHHHHHHHhCCCc
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF-GAKPDVLTYNVMI-------KLCARASRKHLLVFVLERILEMGITL 126 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li-------~~~~~~~~~~~a~~~~~~~~~~~~~~ 126 (583)
.|.+..|..+.......-.++.|...|-..... |++. +.-+..+. ..-+--|++++|.++|-+|..+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~-vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL-- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKL-VKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL-- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhH-HHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh--
Confidence 567778887777766666667776666555443 2211 00011110 111223667777777766655542
Q ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCC
Q 007970 127 CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLP 206 (583)
Q Consensus 127 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 206 (583)
.+..+.+.|++-...++++.--. +..
T Consensus 766 -------Aielr~klgDwfrV~qL~r~g~~---d~d-------------------------------------------- 791 (1189)
T KOG2041|consen 766 -------AIELRKKLGDWFRVYQLIRNGGS---DDD-------------------------------------------- 791 (1189)
T ss_pred -------hHHHHHhhhhHHHHHHHHHccCC---Ccc--------------------------------------------
Confidence 34455566666554444432111 000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH
Q 007970 207 KTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR 286 (583)
Q Consensus 207 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 286 (583)
.+.-..+|+.+...+.....|++|.+.|...... ...+.++.+..++++.+.+-.. ++-+.
T Consensus 792 --D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------------e~~~ecly~le~f~~LE~la~~-----Lpe~s 852 (1189)
T KOG2041|consen 792 --DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------------ENQIECLYRLELFGELEVLART-----LPEDS 852 (1189)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------------HhHHHHHHHHHhhhhHHHHHHh-----cCccc
Confidence 0112345666777777777777777766554321 1234444444444444333332 23344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 347 (583)
...-.+..++.+.|.-++|.+.|-+.. .|- ..+..|...++|.+|.++-+.
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 455556666777777777666654431 121 233455566666666665443
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0042 Score=46.49 Aligned_cols=30 Identities=13% Similarity=0.398 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 340 GALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 340 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
.++.+|+.|...+++|+..+|+.++..+.+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 456667777777777777777777766543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.088 Score=53.10 Aligned_cols=334 Identities=13% Similarity=0.147 Sum_probs=181.7
Q ss_pred HhCCCcchhHHHH-----HHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCC
Q 007970 121 EMGITLCMTTFQS-----LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNS 195 (583)
Q Consensus 121 ~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 195 (583)
..|++.+..-|.. +++-+...+.+..|.++-+.+.......+..+..+...-.... ...-+++.+....-+..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~-d~~d~~vld~I~~kls~- 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQS-DKMDEEVLDKIDEKLSA- 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhcc-CccchHHHHHHHHHhcc-
Confidence 3466666665544 5666777888899988877775432211111122211111111 12222233333322211
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC-CCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 007970 196 INPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN-ASHPDHVTYTTVVSALVKAGSMDRARQVL 274 (583)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 274 (583)
. ......|..+.......|+.+-|..+++.-...+.. ..-.+..-+...+.-+...|+.+....++
T Consensus 503 ------------~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vl 569 (829)
T KOG2280|consen 503 ------------K-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVL 569 (829)
T ss_pred ------------c-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHH
Confidence 0 133456777888888899999999887654332100 00112234566677788888888887777
Q ss_pred HHHHhCC-----------CCCCHHHHHHHHH--------HHHhcCCHHHHHHHH--HHHHhcCCCCCCHHHHHHHHHHHH
Q 007970 275 AEMTRIG-----------VPANRITYNILLK--------GYCQQLQIDKAKELL--REMADDAKIEPDVVSYNILIDGFI 333 (583)
Q Consensus 275 ~~~~~~~-----------~~~~~~~~~~l~~--------~~~~~~~~~~A~~~~--~~~~~~~~~~~~~~~~~~li~~~~ 333 (583)
-.+...- .+.....|.-+++ .+...++-..+...| +.......+.+-..........+.
T Consensus 570 lhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a 649 (829)
T KOG2280|consen 570 LHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFA 649 (829)
T ss_pred HHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHh
Confidence 6665431 1222222222222 011112222222111 110000001111122223333444
Q ss_pred hcCCH----------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007970 334 LIDDS----------AGALTFFNEMRA-RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402 (583)
Q Consensus 334 ~~~~~----------~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 402 (583)
+.... .+-+.+.+.+.. .|......+.+-.+.-+...|+..+|.++-++..- ||...|-.-+.+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~a 724 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTA 724 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHH
Confidence 43331 112222222222 23334445566677778889999999988776643 788888888999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHH
Q 007970 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 482 (583)
++..++|++-+++-+... .+.-|.-.+.+|.+.|+.++|.+++-+... ..
T Consensus 725 La~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------------------l~--- 774 (829)
T KOG2280|consen 725 LADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------------------LQ--- 774 (829)
T ss_pred HHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------------------hH---
Confidence 999999998777765543 244577788899999999999888765431 11
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Q 007970 483 DALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 483 ~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
-...+|.+.|++.+|.++--+-
T Consensus 775 -ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 775 -EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred -HHHHHHHHhccHHHHHHHHHHh
Confidence 4667888889988887765543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.01 Score=59.65 Aligned_cols=136 Identities=13% Similarity=0.074 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 007970 318 IEPDVVSYNILIDGFILI-----DDSAGALTFFNEMRARGIAPT-KISYTTLMKAFALS--------SQPKLANKVFDEM 383 (583)
Q Consensus 318 ~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 383 (583)
.+.+...|...+.+.... ++...|..+|++..+. .|+ ...+..+..++... .+...+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 356777888887775432 2366888889888886 444 34444443333221 1223344444443
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 384 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
......+.+...|..+...+...|++++|...++++.+. .|+...|..+...+...|++++|.+.++++...
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 332124455677888877777889999999999999986 478889999999999999999999999999864
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0049 Score=48.02 Aligned_cols=90 Identities=26% Similarity=0.131 Sum_probs=63.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCC
Q 007970 399 LVEGYCRMGLVEEAKRIIERMKENGFYPN--VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476 (583)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (583)
+..++-..|+.++|+.+|++....|.... ...+-.+..++...|++++|+.++++.... .
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~------------------~ 68 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE------------------F 68 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------C
Confidence 44566778888888888888888776544 234556667788888888888888888765 3
Q ss_pred CC---H-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 477 PD---E-ELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 477 p~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
|+ . .....+..++...|+.++|+..+-...
T Consensus 69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 69 PDDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 43 2 333334557778888888888776654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00061 Score=47.46 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=51.5
Q ss_pred HhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 439 SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
...|++++|+++|+++... .| +......++.+|.+.|++++|.++++++.. ..|+...|
T Consensus 2 l~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR------------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH------------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHH
Confidence 4689999999999999987 55 568888899999999999999999999985 46776666
Q ss_pred HHH
Q 007970 518 KKI 520 (583)
Q Consensus 518 ~~~ 520 (583)
..+
T Consensus 62 ~~l 64 (68)
T PF14559_consen 62 QQL 64 (68)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.016 Score=45.12 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=59.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHH
Q 007970 329 IDGFILIDDSAGALTFFNEMRARGIAPT--KISYTTLMKAFALSSQPKLANKVFDEMLRDPRV-KVDIVAWNMLVEGYCR 405 (583)
Q Consensus 329 i~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~ 405 (583)
..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+|+.....+.. ..+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3456667888888888888877765544 334556666777888888888888877763211 1122233333446677
Q ss_pred cCCHHHHHHHHHHHHH
Q 007970 406 MGLVEEAKRIIERMKE 421 (583)
Q Consensus 406 ~g~~~~A~~~~~~~~~ 421 (583)
.|+.++|++.+-....
T Consensus 88 ~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA 103 (120)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7888888887766553
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0022 Score=44.80 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhh-hHHHHHHHHHH
Q 007970 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAA-FFRKALEIVAC 504 (583)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~ 504 (583)
++.+|..+...+...|++++|+..|++.++. .|+. ..+..+..+|.+.| ++++|++.+++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 4678888999999999999999999999987 6655 88889999999999 89999999999
Q ss_pred HHH
Q 007970 505 MEE 507 (583)
Q Consensus 505 ~~~ 507 (583)
..+
T Consensus 64 al~ 66 (69)
T PF13414_consen 64 ALK 66 (69)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.081 Score=47.66 Aligned_cols=60 Identities=7% Similarity=-0.001 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
.+..-|.+.|.+.-|+.-++.+++... +.+.....+..++.+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp--------------~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYP--------------DTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCC--------------CCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 455568888999999999999988752 233345777788889999999999988877664
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0044 Score=55.20 Aligned_cols=102 Identities=19% Similarity=0.132 Sum_probs=79.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 007970 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (583)
-+.+.+++.+|+..|.+.++.. +-|..-|..-..+|++.|.++.|++-.+..+. -.+....+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 4667889999999999988863 44677777788889999999988888777766 23344678888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 411 EAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
+|++.|++.++ +.|+-.+|..=+..
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999998887 57777766554443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.17 Score=48.13 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=48.3
Q ss_pred HHHHHHHHH--HHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHh
Q 007970 479 EELLDALAD--ICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWL 556 (583)
Q Consensus 479 ~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 556 (583)
...=+.|.+ -+...|++.++.-.-..+. .+.|++.+|.-+.+.++.. .+++||++++.
T Consensus 460 ~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~------------------k~Y~eA~~~l~ 519 (549)
T PF07079_consen 460 EEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMEN------------------KRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHH------------------hhHHHHHHHHH
Confidence 345555554 3567899999988777776 4889999999886666655 79999999999
Q ss_pred cCCC
Q 007970 557 GLPN 560 (583)
Q Consensus 557 ~~~~ 560 (583)
++|.
T Consensus 520 ~LP~ 523 (549)
T PF07079_consen 520 KLPP 523 (549)
T ss_pred hCCC
Confidence 9976
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0013 Score=45.23 Aligned_cols=60 Identities=22% Similarity=0.288 Sum_probs=50.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCC
Q 007970 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPP 512 (583)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 512 (583)
+...+...|++++|+..|+++++. .|+. ..+..+..++.+.|++++|...++++.+ ..|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~------------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ------------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC------------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCc
Confidence 456788999999999999999975 6755 8888999999999999999999999975 345
Q ss_pred C
Q 007970 513 N 513 (583)
Q Consensus 513 ~ 513 (583)
+
T Consensus 63 ~ 63 (65)
T PF13432_consen 63 D 63 (65)
T ss_dssp T
T ss_pred C
Confidence 4
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0053 Score=52.19 Aligned_cols=91 Identities=16% Similarity=0.270 Sum_probs=76.2
Q ss_pred CCcCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChhHH
Q 007970 54 SKPDTAAYNAVLNACANL-----GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA----------------SRKHLL 112 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a 112 (583)
-..+-.+|..++..|.+. |..+=....+..|.+.|+..|..+|+.||..+=+. .+-+-|
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~ 122 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECA 122 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHH
Confidence 355888999999999755 56677788889999999999999999999876432 234668
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh
Q 007970 113 VFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144 (583)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (583)
++++++|...|+-||..++..|++.+++.+..
T Consensus 123 i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 123 IDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999999999776653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0022 Score=44.11 Aligned_cols=57 Identities=18% Similarity=0.124 Sum_probs=33.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|+..|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566666666666666666542 224445555666666666666666666666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.021 Score=51.26 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHHhhhhhccc
Q 007970 389 VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR---KPGEALLLWKEIKERCEVKKEGV 465 (583)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~ 465 (583)
.+-|...|-.|...|...|+++.|...|.+..+. -.+++..+..+..++.... ...++..+++++...
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-------- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-------- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--------
Confidence 3668889999999999999999999999998875 3556777777777754432 456788899998876
Q ss_pred cCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 466 NADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 466 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
.|+ ......|...+...|++.+|...|+.|.+.
T Consensus 223 ----------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 223 ----------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred ----------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555 477888888999999999999999999864
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.2 Score=46.69 Aligned_cols=297 Identities=14% Similarity=0.123 Sum_probs=164.1
Q ss_pred HHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHH--HHhcCCcchHHHHHHHHHHCCCC
Q 007970 13 WSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNA--CANLGKPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 13 ~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~ 90 (583)
|..|-.++...|-++-..|.++-.+..+. +..|....-.++.+ -.-.|++++|.+-|+.|...
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l------------lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d--- 149 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL------------LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD--- 149 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh------------hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---
Confidence 55555556555555577777766655543 22343334444433 35679999999999999862
Q ss_pred CCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhh---HHHHHHH
Q 007970 91 PDVLT--YNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGR---RDVCKII 165 (583)
Q Consensus 91 ~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~ 165 (583)
|.... +..|.-..-+.|..+.|...-++....- +.-.+.+..++...+..|+++.|+++++.-.... ++...-.
T Consensus 150 PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~ 228 (531)
T COG3898 150 PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERS 228 (531)
T ss_pred hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHH
Confidence 33222 2333334457789999998888887763 4567888999999999999999999998665421 1111111
Q ss_pred HhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC
Q 007970 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN 245 (583)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 245 (583)
.... .+.-.... -.-+...|...-.+..+
T Consensus 229 rAvL----------------------------------------------LtAkA~s~-ldadp~~Ar~~A~~a~K---- 257 (531)
T COG3898 229 RAVL----------------------------------------------LTAKAMSL-LDADPASARDDALEANK---- 257 (531)
T ss_pred HHHH----------------------------------------------HHHHHHHH-hcCChHHHHHHHHHHhh----
Confidence 1110 00000111 11224444444444433
Q ss_pred CCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHH
Q 007970 246 ASHPDHV-TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP-DVV 323 (583)
Q Consensus 246 ~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~ 323 (583)
..||.. .-.....++.+.|+..++-.+++.+-+.. |.+.+.... .+.+.|+ .++.-++...+....+| +..
T Consensus 258 -L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 258 -LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred -cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchH
Confidence 233321 22334456667777777777777776653 333322221 1223333 23222222222222223 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhc
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-LSSQPKLANKVFDEMLR 385 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 385 (583)
+...+..+-...|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+..+
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5555566666677777666655555443 566666666666443 34777777777766655
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0015 Score=45.47 Aligned_cols=52 Identities=19% Similarity=0.098 Sum_probs=29.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+.|++++|+++|+++... .+-+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456666666666666554 1225555555666666666666666666666554
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.044 Score=54.05 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=18.1
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQL 80 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~ 80 (583)
+.|....+.+-+-.|...|.+++|.++
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~i 578 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQI 578 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcc
Confidence 344445566666778888888887654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.38 Score=48.82 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC----cchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 007970 93 VLTYNVMIKLCARASRKHLLVFVLERILEMGIT----LCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 156 (583)
..+|..+.+-....|+++-|..+++.=...+.+ .+..-+...+.-+.+.|+.+....++-++..
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 345666666666677777766655432211100 1122333444445556666655555554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0034 Score=43.81 Aligned_cols=65 Identities=23% Similarity=0.173 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHHH
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR-KPGEALLLWKEIKER 457 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 457 (583)
+...|..+...+...|++++|+..|.+.++.. +-+...|..+..++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45677778888888888888888888888752 335667777777888888 688888888887764
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.13 Score=44.95 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (583)
.++.-|=...-..+|...+..+.+. + ...-..+..-|.+.|.+..|+.-++.+++... +...
T Consensus 115 ~li~~yP~S~y~~~A~~~l~~l~~~-l---a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp--------------~t~~ 176 (203)
T PF13525_consen 115 ELIKRYPNSEYAEEAKKRLAELRNR-L---AEHELYIARFYYKRGKYKAAIIRFQYVIENYP--------------DTPA 176 (203)
T ss_dssp HHHHH-TTSTTHHHHHHHHHHHHHH-H---HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST--------------TSHH
T ss_pred HHHHHCcCchHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--------------CCch
Confidence 3333444444555555555554431 0 11122345568888999999999998888731 1111
Q ss_pred CHHHHHHHHHHHHhhhhHHHHH
Q 007970 478 DEELLDALADICVRAAFFRKAL 499 (583)
Q Consensus 478 ~~~~~~~l~~~~~~~g~~~~A~ 499 (583)
....+..++.+|.+.|..+.+.
T Consensus 177 ~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 177 AEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHH
Confidence 1256667778888888877443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.26 Score=46.22 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
..+.+..+.-|...|+...|.++-++. .+ |+...|-..+.+++..++|++-.++... .- .+.-|..++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHH
Confidence 345566677778889888888876555 23 7888999999999999999988776432 12 3467888999
Q ss_pred HHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+|.+.|...+|..+..++.. ..-+..|.+.|++.+|.+.--+.
T Consensus 246 ~~~~~~~~~eA~~yI~k~~~--------------------------~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKIPD--------------------------EERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHCCCHHHHHHHHHhCCh--------------------------HHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999999888776321 23456778888888887765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.011 Score=54.80 Aligned_cols=276 Identities=14% Similarity=0.016 Sum_probs=163.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHH
Q 007970 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR----IGVPA-NRITYNILLKG 295 (583)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~ 295 (583)
.-+|+.|+......+|+...+.+......-...|..|.++|.-.+++++|+++...=+. .|-+. .......|...
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 56789999999999999999875333333345677888888888999999988653211 11000 11122233334
Q ss_pred HHhcCCHHHHHHHHHHHHh---cCC-CCCCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH---
Q 007970 296 YCQQLQIDKAKELLREMAD---DAK-IEPDVVSYNILIDGFILIDD--------------------SAGALTFFNEM--- 348 (583)
Q Consensus 296 ~~~~~~~~~A~~~~~~~~~---~~~-~~~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m--- 348 (583)
+--.|.+++|.-.-.+-+. +-| -......+-.+...|...|+ ++.|.++|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445556555433221111 000 00112233334445543332 23345555432
Q ss_pred -HHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---cCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--
Q 007970 349 -RARGIA-PTKISYTTLMKAFALSSQPKLANKVFDEML---RDPRVK-VDIVAWNMLVEGYCRMGLVEEAKRIIERMK-- 420 (583)
Q Consensus 349 -~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-- 420 (583)
.+.|-. ..-..|..|...|.-.|+++.|+...+.-. +++|.. .....+..+..+++-.|+++.|.+.|+...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 222211 112345666666677889999887665422 223332 234577888899999999999999988754
Q ss_pred --HCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHH
Q 007970 421 --ENG-FYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRK 497 (583)
Q Consensus 421 --~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 497 (583)
+.| -.......-+|.++|.-...+++|+.++.+-........ ..--....+.+|..++...|..+.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~-----------DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE-----------DRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHHHHhhhhHHH
Confidence 222 123445666788888888899999998876544311000 112344678889999999999999
Q ss_pred HHHHHHHHHH
Q 007970 498 ALEIVACMEE 507 (583)
Q Consensus 498 A~~~~~~~~~ 507 (583)
|+.+.+.-++
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 9988877644
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.015 Score=52.72 Aligned_cols=104 Identities=11% Similarity=0.031 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV----ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADS 469 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (583)
..|...+..+.+.|++++|...|+.+++. .|+. ..+-.+..+|...|++++|+..|+.+.+.+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~--------- 212 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK--------- 212 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------
Confidence 44555555556678899999999998875 3443 46677788888999999999999999876310
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 470 DLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 470 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
-......+..++.++...|+.++|.++++.+.+ ..|+..
T Consensus 213 -----s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~--~yP~s~ 251 (263)
T PRK10803 213 -----SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK--KYPGTD 251 (263)
T ss_pred -----CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 011135555667788889999999999998875 345554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.048 Score=44.88 Aligned_cols=72 Identities=24% Similarity=0.152 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH---
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME--- 506 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 506 (583)
+...++..+...|++++|+.+++.+.... +-+...+..++.+|...|+..+|.++|+.+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-----------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-----------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-----------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 55667777888999999999999999872 3355899999999999999999999999984
Q ss_pred --HcCCCCCHHHHH
Q 007970 507 --EHGIPPNKTKYK 518 (583)
Q Consensus 507 --~~~~~p~~~~~~ 518 (583)
+.|+.|++.+-.
T Consensus 127 ~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 127 REELGIEPSPETRA 140 (146)
T ss_dssp HHHHS----HHHHH
T ss_pred HHHhCcCcCHHHHH
Confidence 479999987543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.02 Score=48.78 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=40.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 007970 265 GSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ----------------QLQIDKAKELLREMADDAKIEPDVVSYNIL 328 (583)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 328 (583)
|.++-....+..|.+.|+..|..+|+.|++.+=+ -.+-+-|++++++| +..|+-||..++..+
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~l 144 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQM-ENNGVMPDKETEQML 144 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHH
Confidence 4444444444455555555555555554444321 12345667777777 446777777777777
Q ss_pred HHHHHhcCC
Q 007970 329 IDGFILIDD 337 (583)
Q Consensus 329 i~~~~~~~~ 337 (583)
+..+.+.+.
T Consensus 145 l~iFG~~s~ 153 (228)
T PF06239_consen 145 LNIFGRKSH 153 (228)
T ss_pred HHHhccccH
Confidence 777755443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.057 Score=48.61 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHH
Q 007970 354 APTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG---LVEEAKRIIERMKENGFYPNVAT 430 (583)
Q Consensus 354 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~ 430 (583)
+-|...|..|..+|...|+.+.|...|.+..+ -.+++...+..+..++.... .-.++.++|++++... +-|+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 55677788888888888888888888877776 33455566666665554432 3456777888877652 345566
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 431 YGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 666667777888888888888888764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.29 Score=44.09 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhC
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT---YTTVVSALVKAGSMDRARQVLAEMTRI 280 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~ 280 (583)
...+-.....+.+.|++++|.+.|+.+.... +-+... ...+..++.+.+++++|...++...+.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3333344445555666666666666666541 111111 233445556666666666666666654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.041 Score=51.26 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCCCHH
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEM----RARGIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLR----DPRVKVDIV 394 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~ 394 (583)
.|..|...|.-.|+++.|+...+.- .+.|-+. ....+..+..++.-.|+++.|.+.|+.... -..-.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666666778888888765542 2233221 234567788888888999999888876532 111123345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKE----N-GFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+..+|..+|.-...+.+|+.++++-+. . ...-....+.+|..+|...|..++|+.+.+...+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 566778888888889999888775432 1 12234567888999999999999999888776654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.26 Score=43.18 Aligned_cols=67 Identities=9% Similarity=0.128 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 280 (583)
...+-.....+...|++.+|.+.|+.+....+ +.+--......++.++.+.|+++.|...++..++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYP-NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T-TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444455566677777777777777776521 11112344555666777777777777777776654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.018 Score=45.34 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCC--CCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007970 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNAD--SDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (583)
|..++..++.++++.|+.+....+++..-.- ...+.... -...+.+.|+..++.+++.+|+..|++..|+++++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI---~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI---DVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC---CCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3456777777888888887777776554322 11111111 123347899999999999999999999999999999
Q ss_pred HH-HcCCCCCHHHHHHH
Q 007970 505 ME-EHGIPPNKTKYKKI 520 (583)
Q Consensus 505 ~~-~~~~~p~~~~~~~~ 520 (583)
+. .++++-+...|..+
T Consensus 78 fs~~Y~I~i~~~~W~~L 94 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRL 94 (126)
T ss_pred HHHHcCCCCCHHHHHHH
Confidence 86 48888888888776
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.086 Score=43.37 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA-----RGIAPTKISY 360 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~ 360 (583)
+...++..+...|+++.|..+.+.++... +.+...|..+|.+|...|+...|.++|+.+.. .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456666777778888888777776543 44667777788888888888888877776632 4777766553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.051 Score=49.38 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN----VATYGSL 434 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l 434 (583)
|...+..+.+.|++++|...|+.+.+.+...+ ....+..+..+|...|++++|...|+.+.+. .|+ ...+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHH
Confidence 44444333445666666666666665321110 1235556666667777777777777776653 122 2334444
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHH
Q 007970 435 ANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+...|+.++|...|+++++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55566677777777777777665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.84 Score=46.03 Aligned_cols=76 Identities=9% Similarity=-0.018 Sum_probs=44.6
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh-CCCcchhHHHHHHHHHHcCCChHHHH
Q 007970 70 NLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM-GITLCMTTFQSLVAAYVGFGDLEIAE 148 (583)
Q Consensus 70 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 148 (583)
--|++++|.++|-+|-.+.+ .|....+.|++-...++++.--.. +-..-...|+.+...+.....+++|.
T Consensus 746 ~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 746 FYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34888999998888766432 345555666766666655431000 00112346666777777777777777
Q ss_pred HHHHHH
Q 007970 149 TIVQAM 154 (583)
Q Consensus 149 ~~~~~~ 154 (583)
+.+..-
T Consensus 817 ~yY~~~ 822 (1189)
T KOG2041|consen 817 KYYSYC 822 (1189)
T ss_pred HHHHhc
Confidence 766544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.014 Score=41.91 Aligned_cols=68 Identities=22% Similarity=0.204 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+++.+...|...|++++|+..|++..+.....+ .-.|+ ..++..+..+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-----------DDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-----------THHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-----------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678888899999999999999999987632110 01233 36788889999999999999999998753
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.02 Score=40.33 Aligned_cols=66 Identities=21% Similarity=0.201 Sum_probs=54.3
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCC
Q 007970 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
...|.+.+++++|++.++.+... .|+. ..+.....++.+.|++++|.+.++...+ ..|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL------------------DPDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh------------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCC
Confidence 35688999999999999999986 5554 7888889999999999999999999986 4566
Q ss_pred HHHHHHH
Q 007970 514 KTKYKKI 520 (583)
Q Consensus 514 ~~~~~~~ 520 (583)
......+
T Consensus 62 ~~~~~~~ 68 (73)
T PF13371_consen 62 DPDARAL 68 (73)
T ss_pred cHHHHHH
Confidence 6554433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.023 Score=40.01 Aligned_cols=56 Identities=21% Similarity=0.058 Sum_probs=37.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..|.+.+++++|.++++.+...+ +.+...+.....++...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666777777777777777652 334555666666677777777777777777765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.19 Score=47.25 Aligned_cols=115 Identities=13% Similarity=0.052 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..+++.+..+|.+.+++..|++...+.+... ++|...+---..+|...|+++.|+..|+++++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-----------------~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-----------------PNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-----------------CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3467888889999999999999999998762 44557777778999999999999999999986
Q ss_pred cCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccC
Q 007970 508 HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYGSEWRLD 570 (583)
Q Consensus 508 ~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 570 (583)
+.|+....+.-+..+-.+. +....+.+..+...|.-....+..--+..|...
T Consensus 320 --~~P~Nka~~~el~~l~~k~---------~~~~~kekk~y~~mF~k~~~~~~k~~s~~~~~~ 371 (397)
T KOG0543|consen 320 --LEPSNKAARAELIKLKQKI---------REYEEKEKKMYANMFAKLAEESAKTKSEAALED 371 (397)
T ss_pred --hCCCcHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhcccccccccccchhccc
Confidence 6788776665544444432 333334445555555555444443334444433
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.063 Score=42.34 Aligned_cols=52 Identities=10% Similarity=-0.021 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 007970 281 GVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332 (583)
Q Consensus 281 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 332 (583)
...|+..+..+++.+|+..+++..|+++++...+.-+++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3456777777777777777777777777777776666666677777766543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.87 Score=42.82 Aligned_cols=105 Identities=21% Similarity=0.175 Sum_probs=60.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
+..+.-+...|+...|.++..+. + .|+...|...+.+++..++|++...+... +-++..|..++.+|.+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~F-k----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEF-K----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHc-C----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 33444555566666666665444 2 46666666677777777777665554321 1133556666666666
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 416 (583)
.|+..+|..+..++. +..-+..|.+.|++.+|.+.-
T Consensus 250 ~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 677666666655521 133455666666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.012 Score=42.12 Aligned_cols=69 Identities=14% Similarity=0.301 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcC-HHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPD-TAAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
..+|+.+...|...|+ +++|+..|++..+.....++ -.|+ ..+++.+..+|...|++++|++++++..+
T Consensus 5 a~~~~~la~~~~~~~~--~~~A~~~~~~al~~~~~~~~------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGR--YDEALDYYEKALDIEEQLGD------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTT------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4588999999999999 99999999999986433322 1233 67899999999999999999999998764
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.32 Score=46.98 Aligned_cols=77 Identities=10% Similarity=0.041 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHH
Q 007970 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADI 488 (583)
Q Consensus 410 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~ 488 (583)
.+|.++.++..+.+ +-|+.....+..++...++++.|..+|+++... .||. .+|......
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------------------~Pn~A~~~~~~~~~ 381 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH------------------STDIASLYYYRALV 381 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc------------------CCccHHHHHHHHHH
Confidence 34444444444442 234444444444444455555555555555432 4443 444444444
Q ss_pred HHhhhhHHHHHHHHHHH
Q 007970 489 CVRAAFFRKALEIVACM 505 (583)
Q Consensus 489 ~~~~g~~~~A~~~~~~~ 505 (583)
+.-.|+.++|.+.+++.
T Consensus 382 ~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 382 HFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 44555555555555553
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.21 E-value=1.2 Score=42.43 Aligned_cols=164 Identities=13% Similarity=0.007 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKI--EPDVVSYNILIDGFIL---IDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
.++-+|....+++...++++.+...... ......-....-++.+ .|+.++|++++..+......+++.++..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444466666666666666666432110 0111112222233334 5666666666666444444556666666555
Q ss_pred HHHh---------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC-HH---HHHHHH---HH-HHHCC---CC
Q 007970 366 AFAL---------SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL-VE---EAKRII---ER-MKENG---FY 425 (583)
Q Consensus 366 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~A~~~~---~~-~~~~g---~~ 425 (583)
.|-. ....++|...|.+.-+. .|+...=-.++..+...|. .+ +..++- .. +.+.| -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI---EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC---CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 12366777777766542 2333221111222222232 11 222222 11 22233 23
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 426 PNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 426 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+-..+..++.++.-.|++++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 46667788888899999999999999999865
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.11 Score=42.51 Aligned_cols=87 Identities=16% Similarity=0.031 Sum_probs=42.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHH
Q 007970 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 482 (583)
+...|++++|..+|.-+.-.+ .-+..-+..|..++-..+++++|+.+|....... .-|...+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-----------------~~dp~p~ 108 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-----------------KNDYRPV 108 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------------cCCCCcc
Confidence 344555566655555554432 1233444445555555555666655555544321 1112223
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 483 DALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 483 ~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
-....++...|+.+.|...|+...+
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3344555555666666665555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.81 Score=40.39 Aligned_cols=141 Identities=10% Similarity=-0.001 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL----- 434 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l----- 434 (583)
..+++..+.-.+.+.-....++++++. .-+.++...+.|++.-.+.|+.+.|...|++..+..-..|..+++.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 445555555666676777777777663 33556667777777777778888888887766543223333333333
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCH
Q 007970 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 514 (583)
...|.-++++.+|...+.++...+ +.|....+.-+-+..-.|+..+|++.++.|.+ ..|.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-----------------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-----------------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-----------------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCcc
Confidence 334555677888888887776642 22333444444445557888888888888874 45666
Q ss_pred HHHHHH
Q 007970 515 TKYKKI 520 (583)
Q Consensus 515 ~~~~~~ 520 (583)
.+-.++
T Consensus 320 ~l~es~ 325 (366)
T KOG2796|consen 320 YLHESV 325 (366)
T ss_pred chhhhH
Confidence 655554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.3 Score=48.87 Aligned_cols=145 Identities=17% Similarity=0.140 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH-----HHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI-----VAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVAT 430 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~ 430 (583)
+..++....=.|+-+.+++.+....+..++.-.. -.|..++..++. ....+.|.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3444444455566666666666655533332211 123333333322 34567788888888764 566655
Q ss_pred HHHH-HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 431 YGSL-ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 431 ~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
|... .+.+...|+.++|++.|+++...... --+.....+--+..++.-.++|++|.+.+..+.+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-------------~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSE-------------WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhh-------------HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 5433 33456678888888888865532110 002223455556677777888888888888886532
Q ss_pred CCCCHHHHHHH
Q 007970 510 IPPNKTKYKKI 520 (583)
Q Consensus 510 ~~p~~~~~~~~ 520 (583)
..+...|.-+
T Consensus 336 -~WSka~Y~Y~ 345 (468)
T PF10300_consen 336 -KWSKAFYAYL 345 (468)
T ss_pred -ccHHHHHHHH
Confidence 2344444433
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.27 Score=46.31 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
..+++.+..+|.+.+++.+|++.-++.+..+ ++|...+-.-..+|...|+++.|+..|+++++.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------
Confidence 3467788889999999999999999999874 667888777888999999999999999999986
Q ss_pred CCCCCCH-HHHHHHHHHHHhhhhHHH-HHHHHHHHHH
Q 007970 473 PPLKPDE-ELLDALADICVRAAFFRK-ALEIVACMEE 507 (583)
Q Consensus 473 ~~~~p~~-~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 507 (583)
.|+. .+-..|+.+-.+...+.+ ..++|..|..
T Consensus 321 ---~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 321 ---EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7776 445555555555555444 4778888853
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.3 Score=42.09 Aligned_cols=195 Identities=13% Similarity=0.076 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHH
Q 007970 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG---VPANRITYNILLKGYCQ---QLQID 303 (583)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~ 303 (583)
++..+.+..+...-+.....+..+...++-.|....+++...++.+.+.... +.....+--..+.++.+ .|+.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre 199 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDRE 199 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHH
Confidence 3444455555554221122233444556667888999999999999988752 22233334455666777 89999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 007970 304 KAKELLREMADDAKIEPDVVSYNILIDGFIL---------IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ-- 372 (583)
Q Consensus 304 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 372 (583)
+|++++..++. ....++..+|..+...|-. ....++|+..|.+.-+. .|+...=-.++..+...|.
T Consensus 200 ~Al~il~~~l~-~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 200 KALQILLPVLE-SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcc
Confidence 99999988544 3345777788777766532 23467788888876554 3443332222222222232
Q ss_pred --HHHHHHHH---HH-HhcCC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007970 373 --PKLANKVF---DE-MLRDP--RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA 429 (583)
Q Consensus 373 --~~~a~~~~---~~-~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 429 (583)
-.+..++- .. +.++. .-..+-..+.+++.++.-.|+.++|.+.+++|.+. .|...
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 11222222 22 21211 12345566778899999999999999999999975 34444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.33 Score=39.82 Aligned_cols=96 Identities=7% Similarity=-0.071 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
..-...--+-..|++++|..+|.-+.-.+. -+..-|..|..++-..++++.|+..|......+ .-|+..+.....++.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHH
Confidence 334455556689999999999999988664 355566777777888899999999999887766 456777777899999
Q ss_pred cCCChHHHHHHHHHHHhh
Q 007970 140 GFGDLEIAETIVQAMREG 157 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~ 157 (583)
..|+.+.|...|......
T Consensus 117 ~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 117 LMRKAAKARQCFELVNER 134 (165)
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 999999999999988763
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.6 Score=46.82 Aligned_cols=165 Identities=17% Similarity=0.127 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-----HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDV-----VSYNILIDGFIL----IDDSAGALTFFNEMRARGIAPTKISY 360 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~ 360 (583)
..++....-.|+-+.+++.+....+..++.-.. ..|..++..++. ..+.+.|.+++..+... -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 345555555677777777776665433332222 123333333332 45667888888888876 5665555
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 361 TTL-MKAFALSSQPKLANKVFDEMLRDPR--VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 361 ~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
... .+.+...|++++|.+.|+....... .+.....+--+..++.-..+|++|.+.|..+.+.. .-+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 4456778899999999987653111 11223445556677888899999999999998753 3345555555544
Q ss_pred -HHhcCCH-------hHHHHHHHHHHHH
Q 007970 438 -ISLARKP-------GEALLLWKEIKER 457 (583)
Q Consensus 438 -~~~~g~~-------~~a~~~~~~~~~~ 457 (583)
+...|+. ++|.++++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 4556777 7888888877664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.17 Score=48.78 Aligned_cols=66 Identities=18% Similarity=-0.003 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV----ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777777777777777777664 4543 24677777777777777777777777653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.32 Score=44.82 Aligned_cols=162 Identities=10% Similarity=0.013 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD---IVAWNMLVEGYCRMGLVEEAKRIIERMKENG-----FYPNVAT 430 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~ 430 (583)
.|..+.+++.+..++.+++.+-+.-....|..+. .....++..++.-.+.++++++.|+...+.- -.....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3445555555555566666655544433233221 1233446667777778888888888775421 1112356
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCC--CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK--PDEELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
+-.|...|.+..++++|+-+..++.+.-.. .++. ++. -.......+..++...|.+-+|.+.-++..+.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s--~~l~-------d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNS--YGLK-------DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHh--cCcC-------chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 778888888999999998888777654210 0000 011 11123445566788888888888888876432
Q ss_pred CC-CCCHHHHHHHHHHhhhhhhc
Q 007970 509 GI-PPNKTKYKKIYVEMHSRMFT 530 (583)
Q Consensus 509 ~~-~p~~~~~~~~~~~~l~~~~~ 530 (583)
.+ .-|..++... +..++.+|+
T Consensus 236 al~~Gdra~~arc-~~~~aDIyR 257 (518)
T KOG1941|consen 236 ALQHGDRALQARC-LLCFADIYR 257 (518)
T ss_pred HHHhCChHHHHHH-HHHHHHHHH
Confidence 22 2344444433 334444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.3 Score=39.19 Aligned_cols=133 Identities=11% Similarity=0.005 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH-----HHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV-----AWN 397 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~ 397 (583)
.....++.++...|.+.-.+..+++.++...+.++.....+.+.-.+.|+.+.|...|+.+.+..+ ..+.. ...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 345667777778889999999999999876666788888999999999999999999997765322 22222 223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.....|.-.+++..|...+.+....+ .-|+...|.-.-+....|+..+|++.++.+...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33345666788999999999888763 346666666666677889999999999999876
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.6 Score=36.25 Aligned_cols=93 Identities=12% Similarity=-0.022 Sum_probs=63.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-- 478 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-- 478 (583)
-++...|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|+.-++++.+... -+-.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag---------------~~trta 114 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAG---------------DQTRTA 114 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC---------------ccchHH
Confidence 3566778888888888887765 344677788888888888888888888888776521 1111
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 479 EELLDALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 479 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
-..|..-...|...|+-+.|..-|+..-+.|
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 1334444556777788888888887776655
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.5 Score=39.66 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
-+...-..++.+|...|+.+.|..++..+.... ..........-|..+.+.....+...+-...-.. +-|...-.
T Consensus 166 ~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~ 240 (304)
T COG3118 166 ENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAAL 240 (304)
T ss_pred ccchHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHH
Confidence 335566678888888888888888888776541 1111222223344444444444444444444432 33666667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 338 (583)
.+...+...|+.+.|.+.+-.+++...-..|...-..++..+.-.|.-
T Consensus 241 ~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 241 ALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCC
Confidence 777888888888888887777766544445556666666666555533
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.23 Score=47.80 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCH----HHHHHHHHHHHhcCCcchHHHHHHHH
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT----AAYNAVLNACANLGKPKKFLQLFDQM 84 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m 84 (583)
+...|+.+..+|...|+ +++|+..|++.++ +.|+. .+|..+..+|...|++++|+..++..
T Consensus 74 ~a~a~~NLG~AL~~lGr--yeEAIa~f~rALe-------------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGR--VKDALAQFETALE-------------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHh-------------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45577777777777777 7777777777766 34442 34777777777777777777777777
Q ss_pred HHC
Q 007970 85 HEF 87 (583)
Q Consensus 85 ~~~ 87 (583)
.+.
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 663
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.6 Score=38.66 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=43.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC---
Q 007970 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI--YVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL--- 558 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--- 558 (583)
.+.+.|.+.|.+..|..-+++|.+. .+-+..+..++ +.+.+..+ |..++|...-+=+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~l-----------------gl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYAL-----------------GLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHh-----------------CChHHHHHHHHHHHhc
Confidence 3457889999999999999999874 33333333332 24444443 6777766555444
Q ss_pred -CCCCC-CcccccCCCCC
Q 007970 559 -PNSYY-GSEWRLDPMDG 574 (583)
Q Consensus 559 -~~~~~-~~~~~~~~~~~ 574 (583)
|+++. ...|+..+++|
T Consensus 234 ~p~s~~~~~~~~~~~~~~ 251 (254)
T COG4105 234 YPDSQWYKDAYRLLQRGG 251 (254)
T ss_pred CCCCcchhhhhhcccccc
Confidence 34433 44555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.49 E-value=1 Score=44.56 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=78.3
Q ss_pred HHcCChHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 262 VKAGSMDRARQVLAEM-TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAG 340 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 340 (583)
.-.++++.+.++...- .-..+ +....+.++..+.+.|..+.|+++...- . .-.....+.|+.+.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~----------~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDP----------D---HRFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H----------H---HHHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh----------H---HHhHHHHhcCCHHH
Confidence 3455666655554311 11111 2344566666666666666666554221 1 11223345666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 341 ALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 341 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
|.++.++ .++...|..|.......|+++.|++.|++... +..|+-.|.-.|+.+.-.++.+...
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 6655432 23556677777777777777777777766543 4555566666777666666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 421 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
..| -++....++...|+.++..+++.+.
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 544 1344444455566666666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.47 E-value=3.1 Score=41.55 Aligned_cols=413 Identities=12% Similarity=0.046 Sum_probs=228.8
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
+-..|+.+|.--..... .+.+...++.++.. .|---.-|-.....=.+.|..+.+.++|+.-.+ +
T Consensus 44 ~f~~wt~li~~~~~~~~--~~~~r~~y~~fL~k------------yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-a 108 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIED--VDALREVYDIFLSK------------YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-A 108 (577)
T ss_pred cccchHHHHhccCchhH--HHHHHHHHHHHHhh------------CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-h
Confidence 34467777765544443 56667777777754 333344677777777899999999999999887 5
Q ss_pred CCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHHh-CCC-cchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHH
Q 007970 89 AKPDVLTYNVMIKLCA-RASRKHLLVFVLERILEM-GIT-LCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKII 165 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 165 (583)
+..+...|...+..+. ..|+.+.....|+..... |.. .+...|...|..-..++++.....+++.+.+......+..
T Consensus 109 ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 109 IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 6567777777666554 457777778888887764 322 3456777888888888999999999998887432222211
Q ss_pred HhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHH-HHh
Q 007970 166 RELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN---EGRVSDTVRMLGA-MRR 241 (583)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~-~~~ 241 (583)
. .-|.+.+.+.- .....+...+..+....+. ......-.+.+.. +..
T Consensus 189 f-------------------~~f~~~l~~~~----------~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~ 239 (577)
T KOG1258|consen 189 F-------------------DRFKQLLNQNE----------EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKD 239 (577)
T ss_pred H-------------------HHHHHHHhcCC----------hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhh
Confidence 1 11111110000 0000011111111111110 0000011111111 111
Q ss_pred cccCCCCCC---HHHHHHHHHH-------HHHcCChHHHHHHHHHHHhCC---C----CCCHHHHHHHHHHHHhcCCHHH
Q 007970 242 QEDNASHPD---HVTYTTVVSA-------LVKAGSMDRARQVLAEMTRIG---V----PANRITYNILLKGYCQQLQIDK 304 (583)
Q Consensus 242 ~~~~~~~~~---~~~~~~ll~~-------~~~~g~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~ 304 (583)
. ..|. ....+.+... +-..-........++.-++.- + +++..+|...+..-...|+.+.
T Consensus 240 ~----~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~ 315 (577)
T KOG1258|consen 240 S----TDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSR 315 (577)
T ss_pred c----cCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHH
Confidence 1 1111 1111122221 112222333334444433321 1 2345678888888889999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007970 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384 (583)
Q Consensus 305 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 384 (583)
+.-+|+...- ....=...|-..+.-....|+.+-|..++....+-.++-.+.+-..-...+-..|+.+.|..+++.+.
T Consensus 316 ~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 316 VFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred HHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 9999988852 11112234444455455568888888887776654333333322222223455689999999999998
Q ss_pred cCCCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHhHHHHHHHHHH
Q 007970 385 RDPRVKVDI-VAWNMLVEGYCRMGLVEEAK---RIIERMKENGFYPNVATYGSLANG-----ISLARKPGEALLLWKEIK 455 (583)
Q Consensus 385 ~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~~~~~g~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~ 455 (583)
.+ . |+. ..-..-+....+.|+.+.+. +++........ +..+...+.-- +.-.++.+.|..++.++.
T Consensus 394 ~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~ 468 (577)
T KOG1258|consen 394 SE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADLARIILLEAN 468 (577)
T ss_pred hh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 74 3 443 33333455667788888887 44443333211 22222222222 334678999999999998
Q ss_pred HHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 007970 456 ERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493 (583)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 493 (583)
+. ++++...|..+++.+...+
T Consensus 469 ~~-----------------~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 469 DI-----------------LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hc-----------------CCccHHHHHHHHHHHHhCC
Confidence 75 3566688888888765444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.2 Score=39.50 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=42.4
Q ss_pred HhcCCcchHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcC-ChhHHHHHHHHHHHh----C----CCcc----
Q 007970 69 ANLGKPKKFLQLFDQMHEFG--AKPDV------LTYNVMIKLCARAS-RKHLLVFVLERILEM----G----ITLC---- 127 (583)
Q Consensus 69 ~~~g~~~~A~~~~~~m~~~~--~~~~~------~~~~~li~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~---- 127 (583)
.+.|+++.|..++.+..... ..|+. ..|+.-.. ....+ +++.|...+++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788888888888876643 12221 12332222 23445 777776666554433 1 1222
Q ss_pred -hhHHHHHHHHHHcCCChHHHHH
Q 007970 128 -MTTFQSLVAAYVGFGDLEIAET 149 (583)
Q Consensus 128 -~~~~~~l~~~~~~~g~~~~A~~ 149 (583)
..++..++.+|...+..+...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH
Confidence 2355566666766666544333
|
It is also involved in sporulation []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.8 Score=43.33 Aligned_cols=90 Identities=14% Similarity=0.171 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH----
Q 007970 249 PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVS---- 324 (583)
Q Consensus 249 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---- 324 (583)
.+..+...+...+.+...+..|-++|..|-.. ..+++.....++|.+|..+-+...+ ..||+..
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaq 812 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQ 812 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc---ccccccchHHH
Confidence 34555666666666677778888888776542 3567778888999999888877643 3444321
Q ss_pred -------HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 325 -------YNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 325 -------~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
|.-.-.+|.+.|+-.+|..+++++..
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 22223456666666666666666544
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.2 Score=39.23 Aligned_cols=115 Identities=9% Similarity=0.075 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHcCCHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI----VAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 410 (583)
.|++.+|-..++++.+. .+.|...+...=.+|...|+.+.-...+.++... ..++. ..-..+.-++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34555555555555543 3444444444445555555555555555555442 12222 22222333444556666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
+|.+.-++..+.+ +.|...-..+...+...|++.++.++..+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 6666655555442 23444555555555555666666555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.6 Score=38.14 Aligned_cols=57 Identities=11% Similarity=0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQV 273 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 273 (583)
|...|-.|.-..++..|.+.++...+.+.-....+..+...|+.+| ..|+.|++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3444444555555666666655543332111222344455555544 34444444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.32 E-value=1.2 Score=40.27 Aligned_cols=53 Identities=9% Similarity=0.105 Sum_probs=28.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 007970 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR 385 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 385 (583)
....|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344556666666665555542 22334445555555666666666666655543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.7 Score=43.01 Aligned_cols=84 Identities=11% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.+...|..|.....+.|+++-|.+.|.+... |..|+-.|...|+.+...++.+.....|. ++
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n 406 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAKD------------FSGLLLLYSSTGDREKLSKLAKIAEERGD------IN 406 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HH
Confidence 4566788888888888888888877776643 55566667777777777777766666551 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
....++.-.|+.++..+++.+.
T Consensus 407 ~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 407 IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHc
Confidence 4444555567777777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=2.3 Score=39.07 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=110.5
Q ss_pred CCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHH
Q 007970 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256 (583)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 256 (583)
..|++.+|-..+++++ ..+|.|..++..--.++...|+...-...++++... -.+|...|..
T Consensus 115 ~~g~~h~a~~~wdklL--------------~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~----wn~dlp~~sY 176 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLL--------------DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK----WNADLPCYSY 176 (491)
T ss_pred ccccccHHHHHHHHHH--------------HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc----cCCCCcHHHH
Confidence 4577778888888887 566888889998889999999999999999988775 3455443333
Q ss_pred H----HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHH
Q 007970 257 V----VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD---VVSYNILI 329 (583)
Q Consensus 257 l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~li 329 (583)
+ .-++...|-+++|++.-++..+.+ +.|.....++.+.+-..+++.++.+...+-..... ..+ ..-|-...
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~A 254 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWR-QSWMLASHNYWHTA 254 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchh-hhhHHHhhhhHHHH
Confidence 3 233456899999999999888876 56777788888888899999999988765532111 111 12233334
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 007970 330 DGFILIDDSAGALTFFNEM 348 (583)
Q Consensus 330 ~~~~~~~~~~~a~~~~~~m 348 (583)
-.+...+.++.|+++|..-
T Consensus 255 l~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 255 LFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HhhhcccchhHHHHHHHHH
Confidence 4566679999999999763
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.6 Score=39.07 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=10.7
Q ss_pred HHhcCCHhHHHHHHHHHH
Q 007970 438 ISLARKPGEALLLWKEIK 455 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~ 455 (583)
+.+.+++++|.++|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 445666666666666443
|
It is also involved in sporulation []. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.14 E-value=2.2 Score=37.86 Aligned_cols=276 Identities=12% Similarity=0.099 Sum_probs=157.4
Q ss_pred hcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhc
Q 007970 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI---GV--PANRITYNILLKGYCQQ 299 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 299 (583)
+...+++|+.-|.+..+.....-.-.-.....++....+.+++++..+.+.+++.. .+ .-+..+.|+++...+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 45688999999999887531111111234567888999999999999998888642 11 23456778888877777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDV----VSYNILIDGFILIDDSAGALTFFNEMRARGIAP-----------TKISYTTLM 364 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----------~~~~~~~l~ 364 (583)
.+.+--.+.|+.-++...-..+. .+-.-+...|...+++.+...+++++...-... -...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 77666555554433211111111 122445566777788888888888886542111 124566777
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHH-H---HCCCCCCHHH---HH
Q 007970 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG-----YCRMGLVEEAKRIIERM-K---ENGFYPNVAT---YG 432 (583)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~~-~---~~g~~p~~~~---~~ 432 (583)
+.|....+-.....+|+........-|.+.... +|+- +.+.|++++|..-|-+. . +.| .|...+ |.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYL 276 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYL 276 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHH
Confidence 788888887777888877654334446655433 3333 34668888876444333 2 344 343333 23
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCC---CCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD---LPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
.|.+.+.+.| ++.... .+-.-.|.......|+.+|.+ ++..+-.++++.-+. .
T Consensus 277 VLANMLmkS~----------------------iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~-~ 332 (440)
T KOG1464|consen 277 VLANMLMKSG----------------------INPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS-N 332 (440)
T ss_pred HHHHHHHHcC----------------------CCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc-c
Confidence 3333333333 111110 001225566777888888854 556666666655432 4
Q ss_pred CCCCHHHHHHHHHHhhhh
Q 007970 510 IPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 510 ~~p~~~~~~~~~~~~l~~ 527 (583)
+..|+-.-..+ -+++..
T Consensus 333 IM~DpFIReh~-EdLl~n 349 (440)
T KOG1464|consen 333 IMDDPFIREHI-EDLLRN 349 (440)
T ss_pred ccccHHHHHHH-HHHHHH
Confidence 55555443333 445544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.5 Score=39.64 Aligned_cols=137 Identities=14% Similarity=0.177 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY-GSLA 435 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~ 435 (583)
...|...+.+..+....+.|..+|-++.+..-+.+++..+++++.-++ .|+..-|..+|+--... .||...| ...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 345677777777888899999999999876446788888999987665 56788888998876654 3455444 4556
Q ss_pred HHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCC
Q 007970 436 NGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
.-+...++-+.|..+|+..+.+- ..+ ..+|..++.-=..-|+...+..+-+.|.+ +.|.
T Consensus 474 ~fLi~inde~naraLFetsv~r~-----------------~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQ 534 (660)
T COG5107 474 LFLIRINDEENARALFETSVERL-----------------EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQ 534 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHH-----------------HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCc
Confidence 66778899999999999777652 333 36788888877888888888888888865 4555
Q ss_pred HH
Q 007970 514 KT 515 (583)
Q Consensus 514 ~~ 515 (583)
..
T Consensus 535 en 536 (660)
T COG5107 535 EN 536 (660)
T ss_pred Hh
Confidence 43
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.17 Score=44.82 Aligned_cols=101 Identities=16% Similarity=0.204 Sum_probs=77.4
Q ss_pred CcCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CChhHHH
Q 007970 55 KPDTAAYNAVLNACANL-----GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA----------------SRKHLLV 113 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~ 113 (583)
..|-.+|-+.+..|... +..+-....++.|.+.|++.|..+|+.||+.+-+- .+-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44777888888888643 44566667788999999999999999999876433 2334578
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHcCCChH-HHHHHHHHHH
Q 007970 114 FVLERILEMGITLCMTTFQSLVAAYVGFGDLE-IAETIVQAMR 155 (583)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~ 155 (583)
.++++|...|+.||..+-..|++++.+.+-.- +..+++-.|+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999999998887653 3334443444
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.7 Score=35.31 Aligned_cols=86 Identities=8% Similarity=0.021 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcC
Q 007970 62 NAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141 (583)
Q Consensus 62 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (583)
..++..+.+.+.......+++.+...+. .+....+.++..|++.. ....++.+.. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4567777777888888888888887764 56777888888887653 3333344332 12334445577777777
Q ss_pred CChHHHHHHHHHHH
Q 007970 142 GDLEIAETIVQAMR 155 (583)
Q Consensus 142 g~~~~A~~~~~~~~ 155 (583)
+.++++.-++..+.
T Consensus 83 ~l~~~~~~l~~k~~ 96 (140)
T smart00299 83 KLYEEAVELYKKDG 96 (140)
T ss_pred CcHHHHHHHHHhhc
Confidence 77777777776653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.5 Score=34.24 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKR 414 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 414 (583)
.|..++..++..+..... +..-++-+|.-....-+=+-..++++.+-+-+.+.+-. -...++.+|+..|.
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~------ 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK------ 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT-------
T ss_pred hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc------
Confidence 455666666666655431 33344444443333334444455555554422211110 11233333333332
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 007970 415 IIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF 494 (583)
Q Consensus 415 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 494 (583)
+.......+..+...|+-++-.+++..+.+.. +++...+.-+..+|.+.|+
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-----------------~~~p~~L~kia~Ay~klg~ 135 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-----------------EINPEFLVKIANAYKKLGN 135 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH----------------------S-HHHHHHHHHHHHHTT-
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-----------------CCCHHHHHHHHHHHHHhcc
Confidence 23344455556667777777777776665421 5666777777777777777
Q ss_pred HHHHHHHHHHHHHcCC
Q 007970 495 FRKALEIVACMEEHGI 510 (583)
Q Consensus 495 ~~~A~~~~~~~~~~~~ 510 (583)
..++.+++++.-+.|+
T Consensus 136 ~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 136 TREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHHHTT-
T ss_pred hhhHHHHHHHHHHhch
Confidence 7777777777776665
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.54 E-value=1 Score=40.27 Aligned_cols=106 Identities=13% Similarity=0.055 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC--CCcchhHHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK--PDVLTYNVMIKLCARASRKHLLVFVLERILEMG--ITLCMTTFQS 133 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 133 (583)
...|+.-+..+ +.|++..|...|....+..+. -....+-.|..++...|++++|..+|..+.+.- .+--+..+.-
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 33677776665 778899999999999986421 123345668999999999999999999998853 1223467888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhhHHHHHH
Q 007970 134 LVAAYVGFGDLEIAETIVQAMREGRRDVCKI 164 (583)
Q Consensus 134 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 164 (583)
|..+..+.|+.++|...|+.+.+..|.....
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 8999999999999999999999987765543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.51 E-value=3.2 Score=43.17 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007970 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 333 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (583)
.+.|++++|...|-+-... +.| ..++.-|....+...-..+++.+.+. |.. +...-+.|+.+|.+.++.++-
T Consensus 379 y~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~-gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKK-GLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHc-ccc-cchhHHHHHHHHHHhcchHHH
Confidence 3556666666655554432 222 12333444444555555555555553 322 223334556666666666665
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 007970 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
.++.+... .|.. ..-....+..|.+.+-.++|.-+..+
T Consensus 451 ~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 451 TEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 55554432 1211 11123344444455555555444433
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.37 E-value=4.4 Score=37.77 Aligned_cols=232 Identities=9% Similarity=-0.049 Sum_probs=136.0
Q ss_pred hcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHH----HHHHhCCC-CCCHHHHHHHHHHHHhc
Q 007970 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL----AEMTRIGV-PANRITYNILLKGYCQQ 299 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~----~~~~~~~~-~~~~~~~~~l~~~~~~~ 299 (583)
...+.+.|+..+.+...+.. .....-.++..+..+.++.|.+++++..- +...+..- ..-...|..+.+++.+.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~-~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLS-DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred cCchHHHHHHHHHHHHHHHH-HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665544310 01112345566667777778777655432 22222110 01123445566666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcC
Q 007970 300 LQIDKAKELLREMADDAKIEPD---VVSYNILIDGFILIDDSAGALTFFNEMRARGIA-----PTKISYTTLMKAFALSS 371 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~l~~~~~~~~ 371 (583)
-++.+++.+-+.-....|..|. -.....+..++...+.++++++.|+...+.-.. .....+..+...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6667777666555444444331 133445667778888899999999887653211 12356888888899999
Q ss_pred CHHHHHHHHHHHhc---CCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH----HCCCCCC-HHHHHHHHHHH
Q 007970 372 QPKLANKVFDEMLR---DPRVKVDI-----VAWNMLVEGYCRMGLVEEAKRIIERMK----ENGFYPN-VATYGSLANGI 438 (583)
Q Consensus 372 ~~~~a~~~~~~~~~---~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~----~~g~~p~-~~~~~~l~~~~ 438 (583)
++++|.-+..+... ..++..-. .....+.-++...|+.-+|.+.-++.. ..|-.|. ......+...|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99988776655432 22222111 222334456777888888888777654 3443321 23455667789
Q ss_pred HhcCCHhHHHHHHHHHHHH
Q 007970 439 SLARKPGEALLLWKEIKER 457 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~ 457 (583)
...|+.+.|+.-|+.+...
T Consensus 257 R~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HhcccHhHHHHHHHHHHHH
Confidence 9999999998888876654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.32 E-value=5.5 Score=39.05 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
.+-..+..++.+.|+.++|.+.+.++.+......+......|+.++...+.+.++..++.+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3334566667788888899998888887433223455677888888888899998888888754
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.30 E-value=3.4 Score=36.24 Aligned_cols=177 Identities=12% Similarity=0.051 Sum_probs=78.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
|.....+|....++++|...+.+..+-. ..+...|. ..+.++.|..+.+++... .--...|.-....|.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~y--Ennrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3334445666666776666665554211 11111111 112234444444444432 111233444445556
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHhcCC
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN---G--FYPNVATYGSLANGISLARK 443 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---g--~~p~~~~~~~l~~~~~~~g~ 443 (583)
.+|.++.|-..+++.-+ ..+.-++++|+++|++.... + .+.-...+....+.+.+..+
T Consensus 103 E~GspdtAAmaleKAak-----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK-----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HhCCcchHHHHHHHHHH-----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 66666655555554432 12233455555555544321 0 00111233444445555666
Q ss_pred HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 444 PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 444 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+.+|-..+.+-....... .--|+. ..|...|-.+....++..|.+.++.-
T Consensus 166 f~Eaa~a~lKe~~~~~~~------------~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKC------------DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred hhHHHHHHHHhhhHHHHH------------hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 666555444322110000 012232 44555555666666777777777664
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.93 Score=40.53 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHcCCHH
Q 007970 335 IDDSAGALTFFNEMRARGIAPT---KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD-IVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 335 ~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 410 (583)
.|++..|...|...++.. +-+ ...+-.|..++...|+++.|..+|..+.+.+...|. +..+.-|..+..+.|+.+
T Consensus 154 sgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 344555555555555431 111 122334455555555555555555555543332222 244444555555555555
Q ss_pred HHHHHHHHHHHC
Q 007970 411 EAKRIIERMKEN 422 (583)
Q Consensus 411 ~A~~~~~~~~~~ 422 (583)
+|...|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.53 Score=41.92 Aligned_cols=99 Identities=21% Similarity=0.242 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHhHHHHH
Q 007970 392 DIVAWNMLVEGYCRM-----GLVEEAKRIIERMKENGFYPNVATYGSLANGISLA----------------RKPGEALLL 450 (583)
Q Consensus 392 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----------------g~~~~a~~~ 450 (583)
|..+|...+..+... +..+-....++.|.+.|+.-|..+|+.|++.+-+. .+-+=++.+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 444444444444322 33444444555566666666666666666554321 223347889
Q ss_pred HHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhh-HHHHHHHHHHHH
Q 007970 451 WKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAF-FRKALEIVACME 506 (583)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 506 (583)
+++|... |+.||..+-..|++++.+.|. ..+..+++-.|.
T Consensus 146 LeqME~h----------------GVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 146 LEQMEWH----------------GVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHc----------------CCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 9999887 899999999999999977665 234444444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.07 E-value=11 Score=41.19 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=41.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC
Q 007970 400 VEGYCRMGLVEEAKRIIERMKENGFYPNVA--TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (583)
+.+|..+|+|.+|+.+..++... -|.. +-..|+..+...+++-+|-++..+.... |
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------------------~ 1029 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------------------P 1029 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------------------H
Confidence 44555555666665555554321 1111 1244555566677777776666665432 1
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 478 DEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 478 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
.-.+..|++...|++|.++....
T Consensus 1030 -----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1030 -----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred -----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 12233455566677777766654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=3 Score=34.48 Aligned_cols=132 Identities=12% Similarity=0.057 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH-
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD-IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA-TYGSL- 434 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l- 434 (583)
..|...++ +.+.+..++|+.-|..+.+. |...- .-............|+-..|...|+++-...-.|-.. -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 34444444 34567777788888777653 32221 1222233445567788888888888876542233222 11111
Q ss_pred -HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 435 -ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 435 -~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
...+...|.+++...-.+.+-.. +-+.....-..|.-+-.+.|++..|.+.|..+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d----------------~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGD----------------GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCC----------------CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 12245677777776665554332 1122335556677777788888888888888764
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.84 E-value=1.7 Score=33.84 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=48.3
Q ss_pred HHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHH---H
Q 007970 19 RLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL---T 95 (583)
Q Consensus 19 ~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~ 95 (583)
+++..|+ .+.|++.|.+.+.. .|.....||.-..++--.|+.++|++=+++..+..-..... +
T Consensus 52 alaE~g~--Ld~AlE~F~qal~l------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa 117 (175)
T KOG4555|consen 52 ALAEAGD--LDGALELFGQALCL------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHhccc--hHHHHHHHHHHHHh------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHH
Confidence 4555555 66666666666553 34455666666666666666666666666655541111111 1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 007970 96 YNVMIKLCARASRKHLLVFVLERILEMG 123 (583)
Q Consensus 96 ~~~li~~~~~~~~~~~a~~~~~~~~~~~ 123 (583)
|..-...|...|+.+.|..=|+...+.|
T Consensus 118 ~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 2222334445566666666666555555
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.86 Score=43.80 Aligned_cols=142 Identities=12% Similarity=0.054 Sum_probs=91.2
Q ss_pred HHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHH
Q 007970 402 GYCRMGLVEEAKRIIERMKE-NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEE 480 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 480 (583)
--...|+.-.|-+-+...+. ..-.|+...+. ...+...|.++.+.+.+...... +.....
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-----------------~~s~~~ 358 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-----------------IGTTDS 358 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-----------------hcCCch
Confidence 33456777666554444443 32234444333 34466889999999888766543 345567
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC--
Q 007970 481 LLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL-- 558 (583)
Q Consensus 481 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-- 558 (583)
+..++++...+.|++++|...-+-|....+.. ++.. .+-.... +.-|-++++..+|+.+
T Consensus 359 ~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~-~ei~-----~iaa~sa-------------~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 359 TLRCRLRSLHGLARWREALSTAEMMLSNEIED-EEVL-----TVAAGSA-------------DALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHHHhccccCC-hhhe-----eeecccH-------------HHHhHHHHHHHHHHHHhc
Confidence 88889999999999999999999887544432 2211 1111111 1128899999999887
Q ss_pred CCCCCCcccccCCCCCCCcccCC
Q 007970 559 PNSYYGSEWRLDPMDGDEYITGD 581 (583)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~ 581 (583)
-++|..++|........---+||
T Consensus 420 ~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 420 LNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred cCChhcccceeeeccceeccCcc
Confidence 67777999998776554444444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.81 E-value=1.8 Score=34.65 Aligned_cols=65 Identities=3% Similarity=-0.020 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 007970 59 AAYNAVLNACANLGKPKKFLQLFDQMHEFGA--KPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123 (583)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 123 (583)
..+-.-.....+.|++++|.+.|+.+..+-. .-...+--.|+.++.+.++++.|...+++.++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3334455556688999999999999988622 1234556678899999999999999999999975
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.05 Score=44.60 Aligned_cols=130 Identities=11% Similarity=0.112 Sum_probs=90.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCC
Q 007970 63 AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFG 142 (583)
Q Consensus 63 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 142 (583)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35677788899999999999999877667788899999999999888888887761 12234456788888889
Q ss_pred ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 007970 143 DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG 222 (583)
Q Consensus 143 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 222 (583)
.+++|.-++..+.... .........++++.|.+.+.+. .+...|..++..
T Consensus 85 l~~~a~~Ly~~~~~~~-----------~al~i~~~~~~~~~a~e~~~~~-------------------~~~~l~~~l~~~ 134 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHD-----------EALEILHKLKDYEEAIEYAKKV-------------------DDPELWEQLLKY 134 (143)
T ss_dssp SHHHHHHHHHCCTTHT-----------TCSSTSSSTHCSCCCTTTGGGC-------------------SSSHHHHHHHHH
T ss_pred hHHHHHHHHHHcccHH-----------HHHHHHHHHccHHHHHHHHHhc-------------------CcHHHHHHHHHH
Confidence 8888888877654311 0011234556667777555543 567888888888
Q ss_pred HHhcCCh
Q 007970 223 YMNEGRV 229 (583)
Q Consensus 223 ~~~~g~~ 229 (583)
+...+..
T Consensus 135 ~l~~~~~ 141 (143)
T PF00637_consen 135 CLDSKPF 141 (143)
T ss_dssp HCTSTCT
T ss_pred HHhcCcc
Confidence 8766543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.2 Score=30.91 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.++..+..+|...|++++|+++|+++++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36778889999999999999999999987
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.37 E-value=3.6 Score=33.34 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=22.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 256 TVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 256 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
.++..+...+.......+++.+...+ +.+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44455555555555555555555544 24455555555555543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.28 Score=30.27 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHh
Q 007970 96 YNVMIKLCARASRKHLLVFVLERILEM 122 (583)
Q Consensus 96 ~~~li~~~~~~~~~~~a~~~~~~~~~~ 122 (583)
+..+...|.+.|++++|.++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444555555555555555555544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=5.9 Score=35.10 Aligned_cols=222 Identities=18% Similarity=0.075 Sum_probs=143.0
Q ss_pred CChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 265 GSMDRARQVLAEMTRIGVP-ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343 (583)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 343 (583)
+....+...+......... ............+...+.+..+...+...............+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555544321 134566667777777888888887777765311223445566666666777777888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 344 FFNEMRARGIAPTKISYTTLMK-AFALSSQPKLANKVFDEMLRDPRV--KVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
.+.........+ ......... .+...|+++.|...+...... .. ......+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 888877653332 122222222 677888888888888887541 11 1233444444445677888899998888888
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHH
Q 007970 421 ENGFYP-NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKA 498 (583)
Q Consensus 421 ~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 498 (583)
.. ... ....+..+...+...+.++.+...+...... .|+ ...+..+...+...+.++++
T Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 195 KL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL------------------DPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred hh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh------------------CcccHHHHhhHHHHHHHcCCHHHH
Confidence 75 233 3667777778888888889999888888865 444 44555555555566778888
Q ss_pred HHHHHHHHH
Q 007970 499 LEIVACMEE 507 (583)
Q Consensus 499 ~~~~~~~~~ 507 (583)
...+.....
T Consensus 256 ~~~~~~~~~ 264 (291)
T COG0457 256 LEALEKALE 264 (291)
T ss_pred HHHHHHHHH
Confidence 888888764
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.89 E-value=14 Score=38.78 Aligned_cols=121 Identities=16% Similarity=0.111 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 12 AWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPD--TAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 12 ~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
....-|+.+.+... +.-|+.+-..-. ..++ ...+..-...+.+.|++++|...|-+-... +
T Consensus 336 ~le~kL~iL~kK~l--y~~Ai~LAk~~~--------------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-l 398 (933)
T KOG2114|consen 336 DLETKLDILFKKNL--YKVAINLAKSQH--------------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-L 398 (933)
T ss_pred cHHHHHHHHHHhhh--HHHHHHHHHhcC--------------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-C
Confidence 34455677777766 788877654421 2222 123333344455788888888888776542 2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMR 155 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 155 (583)
+|+ .+|.-|....+......+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+...
T Consensus 399 e~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 399 EPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred ChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 232 2455555556666677778888888754 55555678888888888877777665554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.88 E-value=3.8 Score=32.18 Aligned_cols=139 Identities=12% Similarity=0.199 Sum_probs=70.3
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 263 KAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL 342 (583)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 342 (583)
-.|.+++..++..+..... +..-+|.+|--....-+-+-..++++.+-+. -|. ...|+.....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDI----------SKCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-G----------GG-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------hhhcchHHHH
Confidence 3466677777777666532 3444444443333333334444444444321 121 1223333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 343 TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 343 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
..+-.+ ..+.......+.++...|+-++-.+++..+.+ .-.+++...-.+..+|.+.|+..++.+++.++-+.
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 322221 12344556666777777888888888877765 34567777777788888888888888888888777
Q ss_pred CCC
Q 007970 423 GFY 425 (583)
Q Consensus 423 g~~ 425 (583)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.72 E-value=2.9 Score=35.51 Aligned_cols=107 Identities=10% Similarity=0.129 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH--HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE--ELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
..+..+..-|.+.|+.++|++.|.++.+.+ ..|.. ..+..+++.+...|++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~----------------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYC----------------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhc----------------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 457788888999999999999999988863 34443 677888999999999999999999886
Q ss_pred HcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007970 507 EHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLPNSYYG 564 (583)
Q Consensus 507 ~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 564 (583)
..--.+.+.....- +.++... .....+.+.+|-+.+-..+....+
T Consensus 101 ~~~~~~~d~~~~nr-lk~~~gL------------~~l~~r~f~~AA~~fl~~~~t~~~ 145 (177)
T PF10602_consen 101 SLIEKGGDWERRNR-LKVYEGL------------ANLAQRDFKEAAELFLDSLSTFTS 145 (177)
T ss_pred HHHhccchHHHHHH-HHHHHHH------------HHHHhchHHHHHHHHHccCcCCCC
Confidence 43222222222211 1222211 123347899999888887655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.7 Score=39.58 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE-----NGFYPNVATYG 432 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~ 432 (583)
.++..++..+...++.+.+...++.+.. -.+-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4567788888888999999999999887 4567888999999999999999999999988764 68888888777
Q ss_pred HHHHH
Q 007970 433 SLANG 437 (583)
Q Consensus 433 ~l~~~ 437 (583)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66665
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.61 E-value=7.2 Score=34.77 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=34.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 007970 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI 280 (583)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 280 (583)
-+..-.+.|++++|.+.|+.+..+.+ ..+-...+...++-++.+.++++.|....++....
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33444566777777777777665421 12222445555555666666666666666665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.3 Score=40.19 Aligned_cols=82 Identities=11% Similarity=0.136 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----hCCCcchhHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILE-----MGITLCMTTFQ 132 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 132 (583)
..++..++..+...|+++.+.+.++.+..... -+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 56788899999999999999999999988865 5888899999999999999999999888765 58888888877
Q ss_pred HHHHHHHc
Q 007970 133 SLVAAYVG 140 (583)
Q Consensus 133 ~l~~~~~~ 140 (583)
.......+
T Consensus 232 ~y~~~~~~ 239 (280)
T COG3629 232 LYEEILRQ 239 (280)
T ss_pred HHHHHhcc
Confidence 77766433
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=12 Score=36.55 Aligned_cols=145 Identities=13% Similarity=0.104 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 302 IDKAKELLREMADDAKIEPDV-VSYNILIDGFIL---------IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
.+.|+.+|.+....+...|+- ..|..+..++.. ..+..+|.++-+...+.+ +.|......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 567777788777444445543 333333333221 223456677777777765 557777777777778888
Q ss_pred CHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHhHH
Q 007970 372 QPKLANKVFDEMLRDPRVKVD-IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVAT---YGSLANGISLARKPGEA 447 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~g~~~~a 447 (583)
+.+.|...|++... +.|| ..+|......+.-.|+.++|.+.+++..+. .|.... ....+..|. ....+.|
T Consensus 353 ~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~-~~~~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYV-PNPLKNN 426 (458)
T ss_pred chhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHc-CCchhhh
Confidence 89999999999876 3344 455555556667789999999999997764 454332 222333444 3456777
Q ss_pred HHHHHH
Q 007970 448 LLLWKE 453 (583)
Q Consensus 448 ~~~~~~ 453 (583)
+.+|-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 777654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.13 E-value=4 Score=32.79 Aligned_cols=87 Identities=11% Similarity=0.125 Sum_probs=62.3
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 87 (583)
|....|+.-..++ +.|+ +.+|+..|+.+.... ...+-...+--.++.+|.+.+++++|+..++.+.+.
T Consensus 9 ~~~~ly~~a~~~l-~~~~--Y~~A~~~le~L~~ry---------P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 9 SPQELYQEAQEAL-QKGN--YEEAIKQLEALDTRY---------PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred CHHHHHHHHHHHH-HhCC--HHHHHHHHHHHHhcC---------CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455666666666 4666 999999999998751 112224567778999999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHhc
Q 007970 88 GAKPDVLTYNVMIKLCARA 106 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~ 106 (583)
.+.--..-|...+.+++.-
T Consensus 77 hP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 77 HPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred CCCCCCccHHHHHHHHHHH
Confidence 6543344566666665543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.94 E-value=13 Score=36.07 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 401 (583)
.+|...+..-.+..-.+.|..+|-+..+.| +.++...+++++..++ .|+..-|..+|+.-... .+.+..--+-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456667777777888899999999999988 6778888999998765 58888999999887763 3334444456677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 402 GYCRMGLVEEAKRIIERMKENGFYPN--VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
-+...++-+.|..+|+..... +..+ ...|..++.-=..-|+...+..+=+++...
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 788899999999999976653 3333 457888888888899999998888888765
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.77 E-value=16 Score=36.85 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
..+|...+.--...|+.+.+.-+|+...- ....-...|--.+......|+.+-|..++....+-- .|+......+-.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a 373 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHH
Confidence 34555556556666777777666666654 223334455555555555666666666666555432 222222221211
Q ss_pred -HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 -GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 -~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..-..|++..|..+++.+.+.
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh
Confidence 233456777777777777664
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.67 E-value=8.7 Score=33.64 Aligned_cols=19 Identities=5% Similarity=0.223 Sum_probs=11.6
Q ss_pred HhcCCHhHHHHHHHHHHHH
Q 007970 439 SLARKPGEALLLWKEIKER 457 (583)
Q Consensus 439 ~~~g~~~~a~~~~~~~~~~ 457 (583)
+..+++.+|+.+|++....
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.66 E-value=7.6 Score=32.97 Aligned_cols=91 Identities=15% Similarity=0.057 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG-----SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
.+...+...+++++|..-++..... |....+. .|.+.....|.+++|+..+......
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--------------- 155 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--------------- 155 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc---------------
Confidence 3456677888999998888877643 2223333 3445567788999998888765533
Q ss_pred CCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 473 PPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 473 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
.-.......-.+++...|+-++|..-|++.++..
T Consensus 156 ---~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 ---SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ---cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 1122334445678888899999999999988754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.65 E-value=24 Score=38.75 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 007970 319 EPDVVSYNILIDG----FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394 (583)
Q Consensus 319 ~~~~~~~~~li~~----~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 394 (583)
.|+...+..+..+ +.....+++|.-.|+..-+ ..-.+.+|..+|++.+|..+...+... .+..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~----~de~ 998 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG----KDEL 998 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC----HHHH
Confidence 3555554444433 4456667777666654322 133566777888888888888776541 2222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007970 395 --AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIK 455 (583)
Q Consensus 395 --~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (583)
+-..|+.-+...+++-+|-+++.+.... | ...+..|++...+++|+.......
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 2256777788888888888888777642 1 223334556667788877665443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.59 E-value=3.9 Score=34.77 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD--HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
...+..+...|++.|+.++|++.|.++... ...+. ...+..+|..+.-.+++..+...+.++...-.........
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 456788899999999999999999998875 22332 4566778888888899998888887766432221111111
Q ss_pred HHHH-----HHHhcCCHHHHHHHHHHHH
Q 007970 291 ILLK-----GYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 291 ~l~~-----~~~~~~~~~~A~~~~~~~~ 313 (583)
.-+. .+...+++..|-+.|-...
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 1111 2334677888887776664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.51 E-value=8 Score=32.92 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=67.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCC
Q 007970 402 GYCRMGLVEEAKRIIERMKENGFYPNV-----ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (583)
-+.+.|++++|..-|.+.++. +++.. ..|..-..++.+.+.++.|+.-..+.++. .
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------------------~ 164 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------------------N 164 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------------------C
Confidence 456788888888888888875 33322 23444455677888888888888887764 6
Q ss_pred CCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 477 PDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 477 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
|+. ..+..-..+|.+...+++|+.-|+++++ ..|...-..
T Consensus 165 pty~kAl~RRAeayek~ek~eealeDyKki~E--~dPs~~ear 205 (271)
T KOG4234|consen 165 PTYEKALERRAEAYEKMEKYEEALEDYKKILE--SDPSRREAR 205 (271)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCcchHHHH
Confidence 653 5555556788888999999999999886 456555433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.57 Score=27.31 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=11.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHH
Q 007970 431 YGSLANGISLARKPGEALLLWKE 453 (583)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~ 453 (583)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555555555555555
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.35 E-value=21 Score=37.52 Aligned_cols=132 Identities=9% Similarity=0.151 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHH-HHHHHhcCCcchHHHHHHHHHHCC---CC
Q 007970 15 TVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAV-LNACANLGKPKKFLQLFDQMHEFG---AK 90 (583)
Q Consensus 15 ~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~ 90 (583)
.++..+.+.+. .. |+..+++.++.+... +..+-...|.-+ +..+...+++..|.+.++.+...- ..
T Consensus 105 ll~~i~~~~~~--~~-a~~~l~~~I~~~~~~-------~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 105 LLARIYFKTNP--KA-ALKNLDKAIEDSETY-------GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD 174 (608)
T ss_pred HHHHHHHhcCH--HH-HHHHHHHHHHHHhcc-------CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence 44566666654 34 888888888764331 122334455544 444444589999999998886642 23
Q ss_pred CCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHhCC---------CcchhHHHHHHHHH--HcCCChHHHHHHHHHHHh
Q 007970 91 PDVLTYNVMIKLCA--RASRKHLLVFVLERILEMGI---------TLCMTTFQSLVAAY--VGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 91 ~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 156 (583)
|-...+-.++.+.. +.+..+++.+....+..... .|...+|..+++.+ ...|++..+...++.+..
T Consensus 175 ~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 175 PAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555544 34556677777776643221 23455666666554 566777788877776654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.34 E-value=7.5 Score=32.25 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007970 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT-YNILLKGYCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 251 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~ 314 (583)
...|...++ +.+.+..++|+.-|..+.+.|...-+.. .-.........|+-..|...|+++-.
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 344544444 2345556666666666666553221111 11122233445555556666655533
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.21 E-value=2.8 Score=38.18 Aligned_cols=114 Identities=9% Similarity=0.052 Sum_probs=83.4
Q ss_pred cccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcc
Q 007970 51 VSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF---GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127 (583)
Q Consensus 51 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 127 (583)
..|.+.++.+-..++..-....+.+++...+-.+... ...|+... .++++.|. .-+.++++.++..=+..|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 3566667777788888888888999999998888753 11122211 22334333 2367799999988899999999
Q ss_pred hhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHH
Q 007970 128 MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIR 166 (583)
Q Consensus 128 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 166 (583)
..++..+|+.+.+.+++.+|.++.-.|.....-....+.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~~nell~ 173 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQEAFENELLQ 173 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999999999999998887765543333333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.13 E-value=8 Score=32.22 Aligned_cols=135 Identities=12% Similarity=0.152 Sum_probs=75.1
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 007970 78 LQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157 (583)
Q Consensus 78 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 157 (583)
.+.++.+.+.++.|+...+..++..+.+.|++.... .++..++-+|.......+-.+.. ....+.++--.|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 345556666777788888888888888887765443 34455555555544433322221 222233322222221
Q ss_pred hHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 007970 158 RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLG 237 (583)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (583)
+ ...+..++..+...|++-+|+++.+
T Consensus 88 ---------------------------------L---------------------~~~~~~iievLL~~g~vl~ALr~ar 113 (167)
T PF07035_consen 88 ---------------------------------L---------------------GTAYEEIIEVLLSKGQVLEALRYAR 113 (167)
T ss_pred ---------------------------------h---------------------hhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 0 1134566777888888888888877
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007970 238 AMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279 (583)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 279 (583)
..... ..++ ...++.+..+.+|...-..+++...+
T Consensus 114 ~~~~~----~~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 114 QYHKV----DSVP---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HcCCc----ccCC---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65332 1122 24466666666766655555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.59 Score=27.25 Aligned_cols=26 Identities=31% Similarity=0.180 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47889999999999999999999854
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.94 E-value=14 Score=34.54 Aligned_cols=131 Identities=11% Similarity=0.155 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHcCC--
Q 007970 339 AGALTFFNEMRARGIAPTKISYTTLMKAFAL--SS----QPKLANKVFDEMLRDPRV--KVDIVAWNMLVEGYCRMGL-- 408 (583)
Q Consensus 339 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~-- 408 (583)
++.+.+++.|.+.|..-+..+|.+..-.... .. ....|..+|+.|.+.+.+ .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3456677888888877776666553333322 22 245678888888876443 2344455555433 3333
Q ss_pred --HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHH
Q 007970 409 --VEEAKRIIERMKENGFYPNV--ATYGSLANGISLARK--PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELL 482 (583)
Q Consensus 409 --~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 482 (583)
.+.+..+|+.+.+.|+..+- .....++..+..... ..++.++++.+.+. ++++....|
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~----------------~~kik~~~y 220 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN----------------GVKIKYMHY 220 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc----------------CCccccccc
Confidence 35567777888777766532 233333332222111 34677777777776 566666556
Q ss_pred HHHHH
Q 007970 483 DALAD 487 (583)
Q Consensus 483 ~~l~~ 487 (583)
..+.-
T Consensus 221 p~lGl 225 (297)
T PF13170_consen 221 PTLGL 225 (297)
T ss_pred cHHHH
Confidence 55543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.84 E-value=10 Score=32.84 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLAEMTRI 280 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 280 (583)
.||.-+...+...|+.++|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45556666666667777777777666554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.52 E-value=1.1 Score=25.42 Aligned_cols=29 Identities=24% Similarity=0.175 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+|..+..+|...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45677777888888888888888888775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.02 E-value=13 Score=32.79 Aligned_cols=222 Identities=18% Similarity=0.088 Sum_probs=159.9
Q ss_pred cCChhHHHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHP--DHVTYTTVVSALVKAGSMDRARQVLAEMTRI-GVPANRITYNILLKGYCQQLQI 302 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 302 (583)
.+....+...+...... ... ....+......+...+.+..+...+...... ........+......+...+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (291)
T COG0457 36 LGELAEALELLEEALEL----LPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111 (291)
T ss_pred HhhHHHHHHHHHHHHhc----CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH
Confidence 46666677777776654 121 3567777888888999999999988887752 2345666777777888888999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 303 DKAKELLREMADDAKIEPDVVSYNILID-GFILIDDSAGALTFFNEMRARGI--APTKISYTTLMKAFALSSQPKLANKV 379 (583)
Q Consensus 303 ~~A~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~ 379 (583)
..+...+........ .+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...
T Consensus 112 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 112 EEALELLEKALALDP-DP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHHHHHHHcCCC-Cc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 999999998865322 11 222233333 68899999999999999865321 12334444444456778899999999
Q ss_pred HHHHhcCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 380 FDEMLRDPRVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 380 ~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+...... .+. ....+..+...+...++++.|...+...... .|+ ...+..+...+...+..+++...+......
T Consensus 190 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 190 LEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999873 334 4677888888999999999999999999875 344 445555555555777899999999988876
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.67 E-value=0.56 Score=26.93 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFL 78 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~ 78 (583)
-|-++.+|+.+..+|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3557899999999999999999886
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.52 Score=27.08 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=20.8
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHcCCChHHHH
Q 007970 116 LERILEMGITLCMTTFQSLVAAYVGFGDLEIAE 148 (583)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 148 (583)
|++.++.. |-+...|+.+..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455554 556677777777777777777764
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.14 E-value=24 Score=34.77 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCC-hHHHHHHHHHHHhhhHHHHHHHHhh
Q 007970 92 DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD-LEIAETIVQAMREGRRDVCKIIREL 168 (583)
Q Consensus 92 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ 168 (583)
|+..|...+..|-+.+.+.+...+|.+|.... +.++..|.....-....+. ++.|..+|..-....|+.+.....+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 77777777777766666777777777777653 4444455444333333333 7777777777766666655544433
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.14 E-value=1.5 Score=24.77 Aligned_cols=29 Identities=14% Similarity=0.065 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+..+...+...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777788888888888888888765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.09 E-value=3.4 Score=37.66 Aligned_cols=98 Identities=10% Similarity=0.162 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007970 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARG---IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397 (583)
Q Consensus 321 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (583)
...+-..++..-....+++.++..+-+++... ..|+ .+-..+++.|. .-++++++.++..-++ +|+.||..+++
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcch-hccccchhhHH
Confidence 33344444444444555666666655554421 0111 11122222222 2345555555555444 46666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
.+|+.+.+.+++.+|.++.-.|..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 666666666666666666555543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.92 E-value=7.1 Score=29.05 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 007970 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388 (583)
Q Consensus 340 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 388 (583)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.+..+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~ 76 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG 76 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 4445555555556667777777777777777777777777766665433
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.71 E-value=19 Score=32.84 Aligned_cols=58 Identities=9% Similarity=0.170 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 277 (583)
++.....|..+|.+.+|.++.+..... -+.+...+..++..+...|+--.+.+.++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl----dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL----DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc----ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344445666666666666666666553 3445555666666666666655555555444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.18 E-value=1.5 Score=24.87 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
.+|..+..+|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45677777888888888888888887763
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.87 E-value=33 Score=35.55 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKG-----YCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~ 314 (583)
...+.+.++...+.| +......+..+ +....+.+.|..+|+.+.+
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 345666666666655 22222222222 2234566666666666543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.80 E-value=6.4 Score=28.93 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|+++++....+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44456666777776677888888888888888888888888888877655
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.77 E-value=26 Score=33.33 Aligned_cols=173 Identities=12% Similarity=0.099 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHhHHHH
Q 007970 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL---ARKPGEALL 449 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~ 449 (583)
.+.-+.+++++.+. .+.+...+..++..+.+..+.++..+-++++.... +-+...|..++..... .-.++....
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 34556777777763 34667777778888888888888888888888752 2356677777765433 335667777
Q ss_pred HHHHHHHHhhhhhccccCCCCCCCCCCCC--H---HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCC-CCCHHHHHHHHHH
Q 007970 450 LWKEIKERCEVKKEGVNADSDLPPPLKPD--E---ELLDALADICVRAAFFRKALEIVACMEEHGI-PPNKTKYKKIYVE 523 (583)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~ 523 (583)
+|.+..+.......+... .+.-.++ . .++..+...+..+|..+.|..+++.+.+.++ .|....-... .
T Consensus 124 ~y~~~l~~L~~~~~~~~~----~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~-~- 197 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMT----SHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSF-S- 197 (321)
T ss_pred HHHHHHHHHHHhhccccc----cccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccH-H-
Confidence 777666653322222100 0001111 1 2333444556788999999999999998765 3444211110 0
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhc-C--CCCCCCcccccCCCCCCC
Q 007970 524 MHSRMFTSKHASQARQDRRRERKRAAEAFKFWLG-L--PNSYYGSEWRLDPMDGDE 576 (583)
Q Consensus 524 ~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~--~~~~~~~~~~~~~~~~~~ 576 (583)
...+.=.++|.. . -+.|.+.+|+.....+.+
T Consensus 198 ----------------------~~~~~fe~FWeS~vpRiGE~gA~GW~~~~~~~~~ 231 (321)
T PF08424_consen 198 ----------------------ERLESFEEFWESEVPRIGEPGAKGWRKWMEQGEE 231 (321)
T ss_pred ----------------------HHHHHHHHHhCcCCCCCCCCCcchhhhhhccccc
Confidence 223333356654 3 456668999988754443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.46 E-value=1.6 Score=24.63 Aligned_cols=28 Identities=18% Similarity=0.117 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..+..+..++.+.|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567788999999999999999999875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=87.30 E-value=15 Score=30.79 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHH
Q 007970 409 VEEAKRIIERMKENGFYPNVATYGSLANGI---SLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDA 484 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~ 484 (583)
++.|.+.++.-...+ +.|...++.-..++ ++.....++.++++..+++..... .+.|+. .++.+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL-----------~I~P~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEAL-----------KINPNKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH-----------HH-TT-HHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH-----------hcCCchHHHHHH
Confidence 455555555533331 34555444444443 333443445455544444322110 248886 88888
Q ss_pred HHHHHHhhhh-----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Q 007970 485 LADICVRAAF-----------FRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 485 l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 527 (583)
+..+|...+. |++|...|++..+ ..|+...|+.. +++..+
T Consensus 75 lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ks-Le~~~k 125 (186)
T PF06552_consen 75 LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKS-LEMAAK 125 (186)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHH-HHHHHT
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHH-HHHHHh
Confidence 8888866544 5666666666654 68999999887 555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.83 E-value=11 Score=28.11 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 76 KFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 76 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.+...- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 566667777777888999999999999999999999999998887652 333335655543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.38 E-value=6.2 Score=36.48 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=31.8
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
-|.+.|.+++|+..|...+. -.+.+.+++..-..+|.+..++..|..-....+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 36667777777777766554 223366666666666666666665555444444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.29 E-value=8 Score=33.15 Aligned_cols=75 Identities=20% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHH
Q 007970 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADIC 489 (583)
Q Consensus 410 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~ 489 (583)
+.|.+.|-.+...+.--++.....|...| ...+.++++.++-++.+.... +-.+|...+.+|+..+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~-------------~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNP-------------DDNFNPEILKSLASIY 188 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCC-------------CCCCCHHHHHHHHHHH
Confidence 45555555555444333333333333333 345666666666665554211 1245556666666666
Q ss_pred HhhhhHHHH
Q 007970 490 VRAAFFRKA 498 (583)
Q Consensus 490 ~~~g~~~~A 498 (583)
.+.|+++.|
T Consensus 189 ~~~~~~e~A 197 (203)
T PF11207_consen 189 QKLKNYEQA 197 (203)
T ss_pred HHhcchhhh
Confidence 666666655
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=86.12 E-value=33 Score=32.98 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPR--VKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
...++..+++.+.+.|.++.|...+..+..... ....+.....-...+...|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666777777777777777777777655210 000233334445556667777777777766665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.06 E-value=13 Score=37.39 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
..+.++..+.+.|-.++|+++- ..|+.. .....+.|+++.|.++..+.. +..-|..|..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s----------~D~d~r-----Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~ 674 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS----------TDPDQR-----FELALKLGRLDIAFDLAVEAN------SEVKWRQLGD 674 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC----------CChhhh-----hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHH
Confidence 3455566666666666665441 222211 122345567776666654432 4455677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPK 374 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 374 (583)
+....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |...-++...|+++
T Consensus 675 ~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~ 738 (794)
T KOG0276|consen 675 AALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYE 738 (794)
T ss_pred HHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHH
Confidence 77777777777777665521 444555555566665555555555554421 22222444566666
Q ss_pred HHHHHHHHH
Q 007970 375 LANKVFDEM 383 (583)
Q Consensus 375 ~a~~~~~~~ 383 (583)
++.+++..-
T Consensus 739 ~C~~lLi~t 747 (794)
T KOG0276|consen 739 ECLELLIST 747 (794)
T ss_pred HHHHHHHhc
Confidence 666665444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.92 E-value=18 Score=29.79 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=9.6
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 007970 403 YCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~ 421 (583)
+...|+|.+|+++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 4445555555555555443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.92 E-value=50 Score=34.82 Aligned_cols=430 Identities=13% Similarity=0.089 Sum_probs=213.8
Q ss_pred CHHHHHHHHHHHH-hcCCcchHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChhHHHHHHHHHHHhC----CCc
Q 007970 57 DTAAYNAVLNACA-NLGKPKKFLQLFDQMHEFGAKPDVL-----TYNVMIKLCARASRKHLLVFVLERILEMG----ITL 126 (583)
Q Consensus 57 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~ 126 (583)
+..++-.+...+. ...+++.|...+++.....-+++.. .-..++..+.+.+... |....++.++.- ..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4567777788876 7788999999999875543222221 1234566666666555 888888766542 122
Q ss_pred chhHHHHH-HHHHHcCCChHHHHHHHHHHHhhh---HHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCC
Q 007970 127 CMTTFQSL-VAAYVGFGDLEIAETIVQAMREGR---RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP 202 (583)
Q Consensus 127 ~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (583)
-...|.-+ +..+...++...|.+.++.+.... .+...........+......+..+++.+..+++......+
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~---- 212 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL---- 212 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc----
Confidence 23344434 333334479999999998776543 2222233333333444556677777777777663222111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhcc----cCC----------CC-------------CCHH-
Q 007970 203 PLLPKTFAPNSRIYTTLMKGYM--NEGRVSDTVRMLGAMRRQE----DNA----------SH-------------PDHV- 252 (583)
Q Consensus 203 ~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~----~~~----------~~-------------~~~~- 252 (583)
+..+....|...+|..+++.++ ..|+++.+...++.+...- ... ++ +...
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 0011113466777877776554 5677767766665554320 000 00 1111
Q ss_pred --------HHHHHHHH--HHHcCChHHH-------HHHHHHHH-hCCCCCCH--------HHHHHHHH---------HHH
Q 007970 253 --------TYTTVVSA--LVKAGSMDRA-------RQVLAEMT-RIGVPANR--------ITYNILLK---------GYC 297 (583)
Q Consensus 253 --------~~~~ll~~--~~~~g~~~~a-------~~~~~~~~-~~~~~~~~--------~~~~~l~~---------~~~ 297 (583)
.+..++.+ ....+..+++ .+..+... .....+.. ..+...+. ..+
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~ 372 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNF 372 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11122222 2233433344 44444444 11111111 11111111 223
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCC-----HHHHHH--HHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHH
Q 007970 298 QQLQIDKAKELLREMADDAKIEPD-----VVSYNI--LIDGFILIDDSAGALTFFN--------EMRARGIAPTKISYTT 362 (583)
Q Consensus 298 ~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~~--li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~~ 362 (583)
-.+++..|...+..+.+.....|+ ...+.. ..-.+...|+.+.|...|. .....+...+..++..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 468899999999888653322222 122222 2233456799999999997 4444444444444332
Q ss_pred H--HHHHHhcC--CHHH--HHHHHHHHhcCCCCCCC--HHHHHHH-HHHHHHcC--CHHHHHHHHHHHHH-----CCCCC
Q 007970 363 L--MKAFALSS--QPKL--ANKVFDEMLRDPRVKVD--IVAWNML-VEGYCRMG--LVEEAKRIIERMKE-----NGFYP 426 (583)
Q Consensus 363 l--~~~~~~~~--~~~~--a~~~~~~~~~~~~~~~~--~~~~~~l-i~~~~~~g--~~~~A~~~~~~~~~-----~g~~p 426 (583)
+ +-.+...+ ...+ +.++++.+.......++ ..++..+ +.++.... ...++...+.+..+ .+..-
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 2 11222222 2333 77777777553333332 3333443 33333221 12244444443322 11111
Q ss_pred -CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHHHHH-----HHHHHHhhhhHHHH
Q 007970 427 -NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EELLDA-----LADICVRAAFFRKA 498 (583)
Q Consensus 427 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~-----l~~~~~~~g~~~~A 498 (583)
-..+++.+...+. .|+..+.............. .|| ...|.. +...+...|+.++|
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k---------------~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka 596 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKK---------------SSDYSDQLWHLVASGMLADSYEVQGDRDKA 596 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHh---------------hhhhhhHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 1112232222333 67777766655554332110 222 345533 33457788999999
Q ss_pred HHHHHHHHH
Q 007970 499 LEIVACMEE 507 (583)
Q Consensus 499 ~~~~~~~~~ 507 (583)
.....+...
T Consensus 597 ~~~~~~~~~ 605 (608)
T PF10345_consen 597 EEARQQLDR 605 (608)
T ss_pred HHHHHHHHH
Confidence 998887653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=85.69 E-value=31 Score=32.22 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhc
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQ--QL----QIDKAKELLREMADD 315 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~ 315 (583)
+++.+.+++.+.+.|+.-+..++-+....... .. ....|..+|+.|.+.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 44567778888888877776665543322222 11 244566666666543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.45 E-value=52 Score=34.58 Aligned_cols=101 Identities=8% Similarity=0.026 Sum_probs=67.0
Q ss_pred HHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCc---CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHH
Q 007970 18 SRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKP---DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVL 94 (583)
Q Consensus 18 ~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 94 (583)
+-+.+.+. +++|+.+-+... |.+| -...+...|..+.-.|++++|-...-.|.. -+..
T Consensus 364 ~Wll~~k~--yeeAl~~~k~~~-------------~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~ 424 (846)
T KOG2066|consen 364 DWLLEKKK--YEEALDAAKASI-------------GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAA 424 (846)
T ss_pred HHHHHhhH--HHHHHHHHHhcc-------------CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHH
Confidence 34445566 777776655443 2334 345678889999999999999999998886 4667
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHc
Q 007970 95 TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140 (583)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (583)
-|..-+..+...++......+ +.......++.+|..++..+..
T Consensus 425 eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 425 EWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 777777777777666543332 2222223466788877777766
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.32 E-value=21 Score=29.86 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=15.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 345 FNEMRARGIAPTKISYTTLMKAFALSSQPKLA 376 (583)
Q Consensus 345 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 376 (583)
++.+.+.+++|+...+..+++.+.+.|++...
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L 48 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL 48 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 33344444555555555555555555544333
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.09 E-value=31 Score=31.63 Aligned_cols=139 Identities=13% Similarity=0.125 Sum_probs=91.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD--SAGALTFFNEMRA-RGIAPTKISYTTLMKAFALSSQPKL 375 (583)
Q Consensus 299 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~ 375 (583)
+..+.+|+.+|+....+..+-.|..+...++.......+ ...-.++.+-+.. .+..++..+...++..++..+++..
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 334567777777442223345677777777776665221 2222223333322 3457788889999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHH
Q 007970 376 ANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERM-----KENGFYPNVATYGSLANG 437 (583)
Q Consensus 376 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~g~~p~~~~~~~l~~~ 437 (583)
-.+++.......+...|...|..+|....+.|+..-...+.++- .+.|+..+...-..+-..
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 99999988775456678899999999999999988777776642 334455555544444333
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.05 E-value=5.9 Score=38.58 Aligned_cols=100 Identities=18% Similarity=0.098 Sum_probs=75.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATY-GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 479 (583)
.-+.+.+.++.|..++.++++. .||...| ..-..++.+.+++..|+.=+.++++. .|+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~------------------dP~~ 71 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL------------------DPTY 71 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc------------------Cchh
Confidence 3445667899999999999975 5655444 34447788999999999888888875 5654
Q ss_pred -HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 007970 480 -ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYV 522 (583)
Q Consensus 480 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~ 522 (583)
..|..-..+|.+.+.+.+|+..|+... .+.|+..-....+-
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~--~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVK--KLAPNDPDATRKID 113 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhh--hcCcCcHHHHHHHH
Confidence 566666678888999999999999887 37888877766633
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.95 E-value=33 Score=31.83 Aligned_cols=235 Identities=8% Similarity=0.011 Sum_probs=141.7
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHhCCCcchhH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK----HLLVFVLERILEMGITLCMTT 130 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 130 (583)
.+|.......+..+...|. +++...+..+.+. +|...-...+.++.+.|+. .++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4577777778888887775 4555555555542 5666666677788888764 4567777766443 356666
Q ss_pred HHHHHHHHHcCCCh-----HHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCC
Q 007970 131 FQSLVAAYVGFGDL-----EIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLL 205 (583)
Q Consensus 131 ~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 205 (583)
-...+.++...+.. ..+...+.....
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~------------------------------------------------- 138 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF------------------------------------------------- 138 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh-------------------------------------------------
Confidence 66666666665432 223333322222
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCC
Q 007970 206 PKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG-SMDRARQVLAEMTRIGVPA 284 (583)
Q Consensus 206 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~ 284 (583)
.++..+-...+.++.+.++ .++...+-.+... ++...-...+.++.+.+ +-+.+...+..+.. .+
T Consensus 139 ----D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d------~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~ 204 (280)
T PRK09687 139 ----DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD------PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DK 204 (280)
T ss_pred ----CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC------CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CC
Confidence 2455566666777777665 4566666666543 34444444555555443 23456666666664 35
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007970 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364 (583)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 364 (583)
+..+-...+.++.+.++. .|...+-..++. ++ .....+.++...|+. +|+..+..+... .||..+-...+
T Consensus 205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~ 274 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAI 274 (280)
T ss_pred ChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHH
Confidence 667777788888888874 455544444442 22 234567778888875 688888887764 34777666666
Q ss_pred HHHH
Q 007970 365 KAFA 368 (583)
Q Consensus 365 ~~~~ 368 (583)
.+|.
T Consensus 275 ~a~~ 278 (280)
T PRK09687 275 DKLK 278 (280)
T ss_pred HHHh
Confidence 6654
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=84.82 E-value=27 Score=30.77 Aligned_cols=136 Identities=12% Similarity=0.152 Sum_probs=83.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
.+..|...-++.-|....+++.+ | ..+- +.+--|.+..+..-.-++.+-....+++-+.....+++ +...|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiE-----P-IQSR-CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~G 206 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIE-----P-IQSR-CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQG 206 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhh-----h-HHhh-hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccc
Confidence 34455555555555555555432 1 1111 22223455555555555555566666666666666655 45678
Q ss_pred CHHHHHHHHHHHhcCCCC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 372 QPKLANKVFDEMLRDPRV-----------KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+..+|+..++.-...+|. .|++.....++..|. .+++++|.+.+.++-+.|+.|... .+.+.+++
T Consensus 207 DMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 888888888877664432 477777777777655 467999999999999999987543 34444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.69 E-value=17 Score=31.08 Aligned_cols=86 Identities=19% Similarity=0.122 Sum_probs=52.7
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVD-----IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANGISLA 441 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 441 (583)
...|++++|..-|...+.. .++. ...|..-..++.+.+.++.|+.--.+.++.+ |+ ...+..-..+|.+.
T Consensus 106 F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred hhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 4455666666666555542 2221 2344444556777788888887777777653 32 22333334567788
Q ss_pred CCHhHHHHHHHHHHHH
Q 007970 442 RKPGEALLLWKEIKER 457 (583)
Q Consensus 442 g~~~~a~~~~~~~~~~ 457 (583)
..+++|++-|+++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8888888888888875
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.46 E-value=2.7 Score=25.07 Aligned_cols=31 Identities=29% Similarity=0.224 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
..+++.+...|...|++++|..++++.....
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3577888888888999999999988887753
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.07 E-value=4.5 Score=28.45 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=38.7
Q ss_pred hcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHH
Q 007970 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVA 503 (583)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 503 (583)
...+.++|+..|+.+.+... -.|+. .++.+|+.+|...|++++++++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~---------------~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKIT---------------DREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcC---------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999998731 13333 788889999999999999887644
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.99 E-value=14 Score=31.05 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC----C-------HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCC
Q 007970 409 VEEAKRIIERMKENGFYPNV-ATYGSLANGISLAR----K-------PGEALLLWKEIKERCEVKKEGVNADSDLPPPLK 476 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g----~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (583)
+++|+.-|++.+. +.|+. .++.++..+|...+ + +++|...|+++... +
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~------------------~ 110 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE------------------D 110 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc------------------C
Confidence 3444555555554 45654 57777777765543 2 45555666666554 9
Q ss_pred CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCC
Q 007970 477 PDEELLDALADICVRAAFFRKALEIVACMEEHGIPP 512 (583)
Q Consensus 477 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 512 (583)
|+..+|+.-+..+. +|-++..++.+.+..+
T Consensus 111 P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 111 PNNELYRKSLEMAA------KAPELHMEIHKQGLGQ 140 (186)
T ss_dssp TT-HHHHHHHHHHH------THHHHHHHHHHSSS--
T ss_pred CCcHHHHHHHHHHH------hhHHHHHHHHHHHhhh
Confidence 99999988776663 4566666666555433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.58 E-value=3.5 Score=24.58 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888889999999999999888764
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.41 E-value=64 Score=33.98 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=38.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh-
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG-IAPTKISYTTLMKAFAL- 369 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~- 369 (583)
....+.-+|.++.|.+.+-.. .....|..++...+..|.-.+-.+... ..+.... -.|....+..+|..|.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~---~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRN---EFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHhh---ccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 344556688888888887652 222345555555444333222211111 2222111 01122567777777765
Q ss_pred --cCCHHHHHHHHHHHhc
Q 007970 370 --SSQPKLANKVFDEMLR 385 (583)
Q Consensus 370 --~~~~~~a~~~~~~~~~ 385 (583)
..++.+|.++|--+..
T Consensus 338 F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 338 FEITDPREALQYLYLICL 355 (613)
T ss_dssp TTTT-HHHHHHHHHGGGG
T ss_pred HhccCHHHHHHHHHHHHH
Confidence 4567888888776654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=83.30 E-value=51 Score=32.77 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-HHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN-RITYNI 291 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ 291 (583)
..+-..+..+.-+.|+.++|.+.+.++.+.. ...........|+.++...+.+.++..++.+..+...+.+ ..+|+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTa 336 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEF--PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTA 336 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHH
Confidence 4444667788889999999999999998751 1111334677899999999999999999998765443333 344554
Q ss_pred HH
Q 007970 292 LL 293 (583)
Q Consensus 292 l~ 293 (583)
.+
T Consensus 337 AL 338 (539)
T PF04184_consen 337 AL 338 (539)
T ss_pred HH
Confidence 43
|
The molecular function of this protein is uncertain. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.24 E-value=24 Score=29.06 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=7.4
Q ss_pred hcCChhHHHHHHHHHHh
Q 007970 225 NEGRVSDTVRMLGAMRR 241 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~ 241 (583)
+.++.+++..++..+.-
T Consensus 22 ~~~~~~D~e~lL~ALrv 38 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV 38 (160)
T ss_pred ccCChHHHHHHHHHHHH
Confidence 33444444444444443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=82.38 E-value=31 Score=29.69 Aligned_cols=79 Identities=11% Similarity=0.027 Sum_probs=44.2
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCCH
Q 007970 261 LVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK--IEPDVVSYNILIDGFILIDDS 338 (583)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~ 338 (583)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++...+.... -.+|+..+..|+..+.+.+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344455 556666666666554445555555555444 5566666666665544222 135556666666666666666
Q ss_pred HHH
Q 007970 339 AGA 341 (583)
Q Consensus 339 ~~a 341 (583)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 555
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.72 E-value=70 Score=33.23 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH-----HHHcCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHH
Q 007970 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA-----LVKAGSMDRARQVLAEMTR-------IGVPANRITYNILLKGY 296 (583)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~ 296 (583)
...|.++++.....+ +......+... +....+.+.|+.+++.+.+ .| .......+..+|
T Consensus 228 ~~~a~~~~~~~a~~g------~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG------HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhc------chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHH
Confidence 467888888887763 22222222222 3456789999999999877 55 333556677777
Q ss_pred HhcC-----CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Q 007970 297 CQQL-----QIDKAKELLREMADDAKIEPDVVSYNILIDGFIL-IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA-- 368 (583)
Q Consensus 297 ~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-- 368 (583)
.+.. +.+.|..++..... .+ .|+.......+.-... ..+...|.++|......|.. ..+-.+..+|.
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G 373 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELG 373 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhC
Confidence 7643 56778888887754 33 3444433333222222 24567888888888888743 22222222221
Q ss_pred --hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 007970 369 --LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF 424 (583)
Q Consensus 369 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~ 424 (583)
-..+...|..++++.-+. + .|....-...+..+.. ++++.+.-.+..+.+.|.
T Consensus 374 ~gv~r~~~~A~~~~k~aA~~-g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 374 LGVERNLELAFAYYKKAAEK-G-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCcCCCHHHHHHHHHHHHHc-c-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 223677788888887763 3 2332222233333344 677777777766666554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.23 E-value=20 Score=26.55 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 007970 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 386 (583)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|..+|+.+..+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33455566666666677777778888888888888888888887777643
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.16 E-value=3.9 Score=22.73 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 432 GSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
-.+..++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556677778888888888888776
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=81.10 E-value=34 Score=33.39 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=38.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHhHHHHHHHHHHHH
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVA--TYGSLANGIS--LARKPGEALLLWKEIKER 457 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 457 (583)
..+.+.+++..|.++|..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788899999999988876 555554 4455555553 356788888888887654
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.24 E-value=3.5 Score=25.35 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=23.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcC
Q 007970 484 ALADICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47889999999999999999998644
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.16 E-value=31 Score=34.98 Aligned_cols=132 Identities=17% Similarity=0.040 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAF 367 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 367 (583)
..+.+++.+.+.|-.++|+++- +|... -.....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 4455666666777777666542 12111 1122346677777777665532 456688888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 447 (583)
...+++..|.+.|.+... |..|+-.+...|+-+....+-....+.|. .|....+|...|+++++
T Consensus 677 l~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred hhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence 888888888888877643 45666777777776666666666665552 23333456678888888
Q ss_pred HHHHHHH
Q 007970 448 LLLWKEI 454 (583)
Q Consensus 448 ~~~~~~~ 454 (583)
++++.+-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 8776654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.0 bits (198), Expect = 5e-16
Identities = 49/424 (11%), Positives = 108/424 (25%), Gaps = 41/424 (9%)
Query: 159 RDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR---- 214
R + R L + + + +E+ L + + L AP+ +
Sbjct: 62 RRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQA 121
Query: 215 -------IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM 267
K + ++ +L Q Y V+ + G+
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181
Query: 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI 327
VL + G+ + ++Y L+ +Q Q E E ++ + +
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241
Query: 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDP 387
L+ P ++ + L++ K+ +
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQ 301
Query: 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEA 447
+ + +E A R+ E P+ + +L R E
Sbjct: 302 CLFEKQLH-------------MELASRVCVVSVEKPTLPSKEVKHARKTLKTL-RDQWEK 347
Query: 448 LLLWKEIKERCEVKKEGVNADSDLPPPLK--PDEEL----LDALADIC-----VRAAFFR 496
L + + +++E L P L + E+ L L +
Sbjct: 348 ALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARE 407
Query: 497 KALEIVACMEE-----HGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEA 551
+ + G + + Y+ + + RQ A
Sbjct: 408 LSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALR 467
Query: 552 FKFW 555
+ W
Sbjct: 468 EQPW 471
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 1e-08
Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 6/138 (4%)
Query: 52 SDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHL 111
YNAV+ A G K+ + + + + G PD+L+Y ++ R +
Sbjct: 159 KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQD-- 216
Query: 112 LVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171
I + + E T+++A+ + + +
Sbjct: 217 ----AGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV 272
Query: 172 DYSSENEGDDDDDDEVFE 189
+ S D V
Sbjct: 273 NTSKLLRDVYAKDGRVSY 290
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 2e-07
Identities = 37/396 (9%), Positives = 99/396 (25%), Gaps = 60/396 (15%)
Query: 40 KRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVM 99
R+++ + + A L L + L D + P +
Sbjct: 39 MRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARL 98
Query: 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159
++ + + + ++ + + L +A ++
Sbjct: 99 LQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG--- 155
Query: 160 DVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219
K +Y +
Sbjct: 156 --------------------------------------------QRQKRKLLTLDMYNAV 171
Query: 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRA-RQVLAEMT 278
M G+ +G + V +L + ++ + PD ++Y + + + + L +M+
Sbjct: 172 MLGWARQGAFKELVYVLFMV--KDAGLT-PDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228
Query: 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS 338
+ G+ + +LL + + KA ++ P V+ + L+ D
Sbjct: 229 QEGLKLQALFTAVLLS-EEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287
Query: 339 AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398
++ K + L + S ++ +
Sbjct: 288 VSYPKLHLPLKTLQCLFEKQLHMELASRVCVVS--------VEKPTLPSKEVKHARKTLK 339
Query: 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434
+ L + R++ + + Y L
Sbjct: 340 TLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFL 375
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 4e-07
Identities = 80/545 (14%), Positives = 163/545 (29%), Gaps = 168/545 (30%)
Query: 1 MLRSGYLPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSD---SKPD 57
+LR Y + ++S + P +++ + +R R ++D + + S+
Sbjct: 86 VLRINY-----KF--LMSPIKTE-QRQPSMMTRMY--IEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLL---VF 114
Y + A L +P K + + + G K + +V C + + +F
Sbjct: 136 P--YLKLRQALLEL-RPAKNVLIDG-VLGSG-K-TWVALDV----CLSYKVQCKMDFKIF 185
Query: 115 VL--------ERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR------- 159
L E +LEM L + + I I E RR
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 160 --------DV------------CKII---RELDLEDY---------SSENEGD---DDDD 184
+V CKI+ R + D+ S ++ D+
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 185 DEVFEKLLPNSINPSSEP-------PLLPKTFAPNSRIYTTLMKGY--MNEGRVSDTVRM 235
+ K L P P P A + R + +N +++ +
Sbjct: 304 KSLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 236 -LGA-----MRRQ-EDNASHPDHVTYTT-VVSALVKAGSMDRARQVLAEMTRIGVPA--- 284
L R+ + + P T ++S + V+ ++ + +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL------------IDGF 332
T +I + ++ +L E A I V YNI +D +
Sbjct: 422 KESTISIP------SIYLELKVKLENEYALHRSI---VDHYNIPKTFDSDDLIPPYLDQY 472
Query: 333 I-------LID-DSAGALTFF-----------NEMRARGIAPTKISYT--TLM-----KA 366
L + + +T F ++R A TL K
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 367 FALSSQPKLANKVFDEMLRD-----PRVK--------VDIVAWNMLVEGYCRMGLVEEAK 413
+ + PK ++ ++ P+++ D++ ++ E + EEA
Sbjct: 533 YICDNDPK-----YERLVNAILDFLPKIEENLICSKYTDLLRIALMAED---EAIFEEAH 584
Query: 414 RIIER 418
+ ++R
Sbjct: 585 KQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 50/316 (15%), Positives = 93/316 (29%), Gaps = 97/316 (30%)
Query: 297 CQQLQIDKAKELL-REMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP 355
C+ +Q D K +L +E D + D VS + + +L F E+
Sbjct: 35 CKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV------- 86
Query: 356 TKISYTTLMKAFALSS-QPKLANKVF----DEMLRDPRV--KVDIVAWNMLVEGYCRMGL 408
+I+Y LM QP + +++ D + D +V K ++ R+
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV----------SRLQP 136
Query: 409 VEEAKRIIERMKENGFYPNVATYG-------SLANGISLARKPGEAL---LLWKEIKERC 458
+ ++ + ++ NV G +A + L+ K + + W +K
Sbjct: 137 YLKLRQALLELRPA---KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 459 E---------------VKKEGVNADSDLPPPLKPDEE----------------LLDALAD 487
+D L+ LL L +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLN 252
Query: 488 IC---VRAAF-FR-KAL------EIVACMEEHGIPPNKTKYKKIYVEMHSRMFT------ 530
+ AF K L ++ + + I ++ HS T
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFL-------SAATTTHISLDHHSMTLTPDEVKS 305
Query: 531 --SKHASQARQDRRRE 544
K+ QD RE
Sbjct: 306 LLLKYLDCRPQDLPRE 321
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 583 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.59 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.58 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.31 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.22 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.11 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.07 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.98 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.95 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.91 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.88 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.84 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.81 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.8 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.8 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.75 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.74 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.69 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.68 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.67 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.62 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.56 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.55 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.55 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.54 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.53 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.5 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.48 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.48 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.47 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.46 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.4 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.39 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.36 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.34 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.34 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.29 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.26 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.26 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.24 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.07 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.05 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.05 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.99 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.99 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.98 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.95 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.95 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.94 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.93 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.87 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.8 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.78 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.77 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.76 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.73 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.71 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.7 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.67 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.63 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.59 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.58 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.54 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.47 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.45 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.45 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.42 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.28 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.08 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.91 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.9 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.85 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.8 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.65 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.64 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.56 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.49 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.45 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.2 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.8 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.79 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.78 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.75 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.74 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.67 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.54 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.1 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.09 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.94 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.48 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.05 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.76 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.62 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.26 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.24 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.02 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.33 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.64 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.39 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.35 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.73 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.67 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.39 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.02 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.92 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.6 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.22 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.97 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.95 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 88.53 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.66 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.05 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.15 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.33 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=332.29 Aligned_cols=449 Identities=10% Similarity=0.023 Sum_probs=391.9
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 87 (583)
+++..|+.++..|.+.|+ +++|+.+|+++.. ..|+..++..++.+|.+.|++++|+.+|+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~g~--~~~A~~~~~~~~~-------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 146 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQ--YKCAAFVGEKVLD-------------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY 146 (597)
T ss_dssp CHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH-------------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHHccC--chHHHHHHHHHHh-------------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc
Confidence 678899999999999999 9999999999986 3578889999999999999999999999998643
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh---------------CCCcchhHHHHHHHHHHcCCChHHHHHHHH
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM---------------GITLCMTTFQSLVAAYVGFGDLEIAETIVQ 152 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 152 (583)
.++..+++.++.+|.+.|++++|.++|+++... +.+.+..+|+.++.+|.+.|++++|.++|+
T Consensus 147 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 224 (597)
T 2xpi_A 147 --NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYK 224 (597)
T ss_dssp --GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 578999999999999999999999999853221 224468899999999999999999999999
Q ss_pred HHHhhhHHHHHHHHhh-----------------------------------hhccccccCCCCCCCcHHHHHhhcCCCCC
Q 007970 153 AMREGRRDVCKIIREL-----------------------------------DLEDYSSENEGDDDDDDEVFEKLLPNSIN 197 (583)
Q Consensus 153 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 197 (583)
++...+++.......+ ...+..+.+.|++++|..+|+++..
T Consensus 225 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---- 300 (597)
T 2xpi_A 225 EALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING---- 300 (597)
T ss_dssp HHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT----
T ss_pred HHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc----
Confidence 9988766544332221 1225667788999999999999872
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 007970 198 PSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEM 277 (583)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 277 (583)
.+++..+|+.++.+|.+.|++++|+++|+++.+. .+.+..++..++.++.+.|++++|..+++.+
T Consensus 301 -----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 365 (597)
T 2xpi_A 301 -----------LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI----DPYNLDVYPLHLASLHESGEKNKLYLISNDL 365 (597)
T ss_dssp -----------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -----------CCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1588999999999999999999999999999876 3446788999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007970 278 TRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357 (583)
Q Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 357 (583)
.+.. +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|+++|+++...+ +.+.
T Consensus 366 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 441 (597)
T 2xpi_A 366 VDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTH 441 (597)
T ss_dssp HHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCS
T ss_pred HhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 8654 6678999999999999999999999999997642 4568899999999999999999999999999874 5578
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GFYPN--VATY 431 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~ 431 (583)
.++..++.+|.+.|++++|.++|+++.+ ..+.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~ 519 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 9999999999999999999999999987 34567899999999999999999999999999875 66787 7899
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCC
Q 007970 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIP 511 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 511 (583)
..++.+|.+.|++++|++.++++.+.. +.+..+|..++.+|.+.|++++|.+.++++.+ +.
T Consensus 520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~ 580 (597)
T 2xpi_A 520 ANLGHAYRKLKMYDAAIDALNQGLLLS-----------------TNDANVHTAIALVYLHKKIPGLAITHLHESLA--IS 580 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-----------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cC
Confidence 999999999999999999999999861 33679999999999999999999999999986 45
Q ss_pred CCHHHH
Q 007970 512 PNKTKY 517 (583)
Q Consensus 512 p~~~~~ 517 (583)
|+....
T Consensus 581 p~~~~~ 586 (597)
T 2xpi_A 581 PNEIMA 586 (597)
T ss_dssp TTCHHH
T ss_pred CCChHH
Confidence 655433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=307.44 Aligned_cols=443 Identities=9% Similarity=-0.001 Sum_probs=372.9
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
.+++..|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 368899999999999999999999999999864 478899999999999999999999999988654 6789999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhHH-------------HHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCC
Q 007970 135 VAAYVGFGDLEIAETIVQAMREGRRD-------------VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (583)
+.+|.+.|++++|.++|+++...... .......+...+..+.+.|++++|...|++++...
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 230 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD------ 230 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Confidence 99999999999999999853322100 00112334455677888999999999999987321
Q ss_pred CCCCCCCCCCCHHHH--------------------------------------HHHHHHHHhcCChhHHHHHHHHHHhcc
Q 007970 202 PPLLPKTFAPNSRIY--------------------------------------TTLMKGYMNEGRVSDTVRMLGAMRRQE 243 (583)
Q Consensus 202 ~~~~~~~~~~~~~~~--------------------------------------~~li~~~~~~g~~~~A~~~~~~~~~~~ 243 (583)
+.+..++ +.++..|.+.|++++|.++|+.+...
T Consensus 231 --------p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~- 301 (597)
T 2xpi_A 231 --------AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL- 301 (597)
T ss_dssp --------TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-
T ss_pred --------chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-
Confidence 2223333 33356677889999999999998763
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH
Q 007970 244 DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVV 323 (583)
Q Consensus 244 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 323 (583)
+++..+|..++..+.+.|++++|.++|+.+.+.+ +.+..++..++.+|.+.|++++|..+++.+.+. .+.+..
T Consensus 302 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 374 (597)
T 2xpi_A 302 ----EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAV 374 (597)
T ss_dssp ----GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHH
T ss_pred ----CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHH
Confidence 4789999999999999999999999999999876 557888999999999999999999999999754 256788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 403 (583)
+|..++..|.+.|++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+ ..+.+..+|+.++.+|
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHH
Confidence 99999999999999999999999998863 44688999999999999999999999999987 3456889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHH
Q 007970 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EEL 481 (583)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~ 481 (583)
.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|+++|+++.+..... +..|+ ..+
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~p~~~~~~ 518 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT------------QSNEKPWAAT 518 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------------CCCSGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc------------ccchhhHHHH
Confidence 99999999999999999863 4578999999999999999999999999998763210 33677 689
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
+..++.+|.+.|++++|.++++++.+.+ +.+...|..+ ..++.+. |++++|.++++++
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l-~~~~~~~-----------------g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAI-ALVYLHK-----------------KIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHH-HHHHHHT-----------------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHH-HHHHHHh-----------------CCHHHHHHHHHHH
Confidence 9999999999999999999999998754 3356666665 7777776 9999999988766
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-27 Score=233.78 Aligned_cols=381 Identities=14% Similarity=0.055 Sum_probs=331.0
Q ss_pred HHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHH
Q 007970 17 VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96 (583)
Q Consensus 17 i~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 96 (583)
...+.+.|+ +++|+..++++.+. .|.+...+..+...+...|++++|...++...+... .+..+|
T Consensus 6 a~~~~~~g~--~~~A~~~~~~~~~~------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~ 70 (388)
T 1w3b_A 6 AHREYQAGD--FEAAERHCMQLWRQ------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAY 70 (388)
T ss_dssp HHHHHHHTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHCCC--HHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHH
Confidence 345667888 99999999999875 455678888899999999999999999999988653 577899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhcccccc
Q 007970 97 NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176 (583)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (583)
..+...+.+.|++++|...|+++.+.. +.+..++..+..++.+.|++++|.+.|+.+....
T Consensus 71 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------ 131 (388)
T 1w3b_A 71 SNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN------------------ 131 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------
Confidence 999999999999999999999999875 5567789999999999999999999999887632
Q ss_pred CCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHH
Q 007970 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256 (583)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 256 (583)
+.+..++..+...+...|++++|.+.|.++... .+.+..+|..
T Consensus 132 ---------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~ 174 (388)
T 1w3b_A 132 ---------------------------------PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET----QPNFAVAWSN 174 (388)
T ss_dssp ---------------------------------TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred ---------------------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHH
Confidence 344667888999999999999999999999885 3456789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 007970 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336 (583)
Q Consensus 257 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 336 (583)
+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..... +.+..++..+...+...|
T Consensus 175 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 175 LGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999875 5567889999999999999999999999987653 346788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007970 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 416 (583)
++++|+..|+++.+.. +.+..++..+..++.+.|++++|...|+++.+ ..+.+..++..+...+.+.|++++|.+.+
T Consensus 252 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (388)
T 1w3b_A 252 LIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp CHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999874 44678899999999999999999999999987 45678899999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhh
Q 007970 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAA 493 (583)
Q Consensus 417 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 493 (583)
+++.+. .+.+..++..+..++.+.|++++|+..|+++.+. .|+ ...+..+..++...|
T Consensus 329 ~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 329 RKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI------------------SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT------------------CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCCHHHHHhHHHHHHHcc
Confidence 999875 3456789999999999999999999999999864 665 467777777666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-26 Score=226.93 Aligned_cols=368 Identities=13% Similarity=0.037 Sum_probs=320.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCC
Q 007970 64 VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143 (583)
Q Consensus 64 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 143 (583)
+...+.+.|++++|++.++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45677899999999999999988653 345667778888899999999999999998875 6788999999999999999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 007970 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223 (583)
Q Consensus 144 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 223 (583)
+++|...|+++.... +.+..+|..+..++
T Consensus 83 ~~~A~~~~~~al~~~---------------------------------------------------p~~~~~~~~l~~~~ 111 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK---------------------------------------------------PDFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHHHHHHHHHHC---------------------------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---------------------------------------------------cchHHHHHHHHHHH
Confidence 999999999987631 34577899999999
Q ss_pred HhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303 (583)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 303 (583)
.+.|++++|.+.|.++.+. .+.+...+..+...+...|++++|.+.|+.+.+.. +.+..++..+..++...|+++
T Consensus 112 ~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 186 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHH----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999885 23345677888888999999999999999999864 556889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383 (583)
Q Consensus 304 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 383 (583)
+|...|+++++.. +.+...|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|...|+++
T Consensus 187 ~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 187 LAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998753 4467789999999999999999999999998863 446788999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhc
Q 007970 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463 (583)
Q Consensus 384 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 463 (583)
.+ ..+.+..+|..+..++.+.|++++|.+.|+++.+. .+.+..++..+...+...|++++|+..++++.+.
T Consensus 264 l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 334 (388)
T 1w3b_A 264 IE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV------ 334 (388)
T ss_dssp HH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS------
T ss_pred Hh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 87 34556889999999999999999999999999986 4668889999999999999999999999999864
Q ss_pred cccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 464 GVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 464 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.|+ ..++..++.+|.+.|++++|.+.++++.+ +.|+..
T Consensus 335 ------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~ 373 (388)
T 1w3b_A 335 ------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFA 373 (388)
T ss_dssp ------------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCH
T ss_pred ------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCH
Confidence 454 58899999999999999999999999985 556543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=240.41 Aligned_cols=195 Identities=14% Similarity=0.213 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 007970 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332 (583)
Q Consensus 253 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 332 (583)
.++.+|++|++.|++++|.++|++|.+.|++||..+|+.||.+|++.+....+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------------------------- 80 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------------------------- 80 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------------------------
Confidence 45556666666666666666666666666666666666666666554431000
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007970 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 333 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (583)
...+..++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+. |+.||..+|+++|.+|++.|++++|
T Consensus 81 ~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 81 SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccceehHHHHHHHHCCCHHHH
Confidence 001123455555555555555555555555555555555555555555555442 5555555555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHh
Q 007970 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR 491 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 491 (583)
.++|++|.+.|+.||..||+.|+.+|++.|+.++|.+++++|.+. ++.|+..||+.++..|..
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~----------------g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL----------------VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------TSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh----------------CCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555554 445555555555554443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-28 Score=240.21 Aligned_cols=204 Identities=18% Similarity=0.228 Sum_probs=175.5
Q ss_pred HHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 007970 305 AKELLREMADDAKIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ---------PK 374 (583)
Q Consensus 305 A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~ 374 (583)
+..+.+.+. ..+..+. ...++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. .+
T Consensus 9 ~e~L~~~~~-~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAK-KKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHH-HhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344445553 3444443 346788899999999999999999999999999999999999999987654 68
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
.|.++|++|.+. |+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+.++|.++|++|
T Consensus 88 ~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 88 RGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999885 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Q 007970 455 KERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSR 527 (583)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~ 527 (583)
.+. |+.||..+|++|+.+|++.|++++|.+++++|++.|..|+..||..+ .+....
T Consensus 167 ~~~----------------G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l-~~~F~s 222 (501)
T 4g26_A 167 VES----------------EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI-EEWFKS 222 (501)
T ss_dssp HHT----------------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH-HHHHHS
T ss_pred Hhc----------------CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH-HHHHhc
Confidence 987 89999999999999999999999999999999999999999999887 554443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-22 Score=205.44 Aligned_cols=417 Identities=11% Similarity=0.016 Sum_probs=317.6
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
.+..|......+.+.|+ +++|+..|+++.+. .|+..+|..+..++.+.|++++|+..|+.+.+.+
T Consensus 5 ~a~~~~~~g~~~~~~g~--~~~A~~~~~~al~~-------------~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 69 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKK--YDDAIKYYNWALEL-------------KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK 69 (514)
T ss_dssp HHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhc-------------CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC
Confidence 35577788889999998 99999999999984 4789999999999999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhh-----------
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG----------- 157 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------- 157 (583)
+ .+..+|..+..++...|++++|...|+++.+.+ +++......++..+........+.+.+..+...
T Consensus 70 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 147 (514)
T 2gw1_A 70 P-DYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147 (514)
T ss_dssp S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC------------------
T ss_pred h-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence 3 366789999999999999999999999999876 444444444433333222221111111100000
Q ss_pred ----------------------------------hHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcC-----CCCCC
Q 007970 158 ----------------------------------RRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLP-----NSINP 198 (583)
Q Consensus 158 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-----~~~~~ 198 (583)
.++..............+...|++++|...|++++. ....+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 227 (514)
T 2gw1_A 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCc
Confidence 001112222222222223346777777777777662 10000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007970 199 SSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278 (583)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 278 (583)
.. ....+.+..++..+..++...|++++|.+.|+.+... .|+...+..+...+...|++++|...++.+.
T Consensus 228 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 228 ED-----EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-----FPRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp TC-----HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred cc-----cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 00 0000234678889999999999999999999999886 2338889999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 007970 279 RIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKI 358 (583)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 358 (583)
+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+..
T Consensus 298 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 373 (514)
T 2gw1_A 298 KLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPE 373 (514)
T ss_dssp TTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSH
T ss_pred hcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHH
Confidence 875 5577889999999999999999999999997643 3456788899999999999999999999998863 44677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCR---MGLVEEAKRIIERMKENGFYPNVATY 431 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~g~~p~~~~~ 431 (583)
.+..+...+...|++++|...++.+.+.....++ ...+..+..++.. .|++++|.+.++++.+.. +.+..++
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 452 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 8889999999999999999999998763111122 3488899999999 999999999999998763 4467888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 432 GSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+...+...|++++|...|+++.+.
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999986
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.5e-23 Score=209.15 Aligned_cols=427 Identities=10% Similarity=-0.029 Sum_probs=326.1
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
.+..+......+.+.|++++|+..|+.+.+.. |+..+|..+..++...|++++|+..++++.+.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35678888999999999999999999999875 789999999999999999999999999999986 667889999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHHHHHH----Hhhh---hccccccCC-------------------------CCCCCc
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDVCKII----RELD---LEDYSSENE-------------------------GDDDDD 184 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~-------------------------~~~~~a 184 (583)
++.+.|++++|...|+.+....+...... .... ......... ......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 99999999999999999876543111100 0000 000000000 111111
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHh-----cccCCC-----CCCH
Q 007970 185 DEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN---EGRVSDTVRMLGAMRR-----QEDNAS-----HPDH 251 (583)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~~~-----~~~~ 251 (583)
..+...+.... .......+ ..+.+...+......+.. .|++++|...|+++.. ...... +.+.
T Consensus 162 ~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 162 TSMASFFGIFK--PELTFANY--DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp HHHHHHHTTSC--CCCCCSSC--CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred HHHHHHHhhcC--HHHHHHHh--cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 11111110000 00000000 012336666666666665 8999999999999887 210000 2235
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 331 (583)
..+..+...+...|++++|...++.+.+.. |+...+..+..+|...|++++|...++.+.... +.+...+..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHH
Confidence 678888999999999999999999999875 338889999999999999999999999997532 4567789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007970 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 411 (583)
+...|++++|...|+++.... +.+...+..+...+...|++++|...++.+.+. .+.+..++..+..++.+.|++++
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999874 446778889999999999999999999999873 44567889999999999999999
Q ss_pred HHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHH
Q 007970 412 AKRIIERMKENGF-YPN----VATYGSLANGISL---ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELL 482 (583)
Q Consensus 412 A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~ 482 (583)
|.+.++++.+... .++ ...+..+...+.. .|++++|+..++++.+. .| +..++
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~~ 452 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL------------------DPRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH------------------CTTCHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh------------------CcccHHHH
Confidence 9999999876421 112 3488889999999 99999999999999986 44 45788
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 483 DALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 483 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
..+..+|.+.|++++|...+++..+ +.|+....
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~ 485 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESAD--LARTMEEK 485 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HCSSHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--hccccHHH
Confidence 8999999999999999999999986 45665443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-22 Score=201.88 Aligned_cols=347 Identities=13% Similarity=0.099 Sum_probs=280.1
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
.|.++..+..+...+.+.|++++|+.+|+.+.+... .+..+|..+..++...|++++|+..|+++.+.+ +.+..++..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 456788999999999999999999999999988643 468889999999999999999999999999986 567889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhhHHHH---HHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCC
Q 007970 134 LVAAYVGFGDLEIAETIVQAMREGRRDVC---KIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA 210 (583)
Q Consensus 134 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (583)
+..+|.+.|++++|...|+.+....++.. .....+...
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------- 140 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS--------------------------------------- 140 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH---------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH---------------------------------------
Confidence 99999999999999999999987543222 111100000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.....+..+...+...|++++|++.|+.+... .+.+...+..+..++.+.|++++|..+++.+.+.. +.+..++.
T Consensus 141 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 00112334456699999999999999999886 45678899999999999999999999999998764 56789999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL------------IDGFILIDDSAGALTFFNEMRARGIAPT-- 356 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~-- 356 (583)
.+..+|...|++++|...|+++.... +.+...+..+ ...+...|++++|+.+|+++... .|+
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 291 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIA 291 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcch
Confidence 99999999999999999999997642 3344455444 78899999999999999999885 344
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 007970 357 ---KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP-NVATYG 432 (583)
Q Consensus 357 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~ 432 (583)
...+..+..++.+.|++++|...++.+.+ ..+.+..+|..+..+|...|++++|.+.++++.+. .| +...+.
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 367 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIRE 367 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHH
Confidence 34788889999999999999999999886 23557899999999999999999999999999975 45 455666
Q ss_pred HHHHH------------HHhcC-----CHhHHHHHHHHH
Q 007970 433 SLANG------------ISLAR-----KPGEALLLWKEI 454 (583)
Q Consensus 433 ~l~~~------------~~~~g-----~~~~a~~~~~~~ 454 (583)
.+..+ |...| +.+++.+.|++.
T Consensus 368 ~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 55533 33334 556777777763
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-22 Score=202.54 Aligned_cols=337 Identities=12% Similarity=0.108 Sum_probs=276.1
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 87 (583)
.++..|..+...+.+.|+ +++|+..|+++.+. .+.+..++..+..++...|++++|+..|+.+.+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~--~~~A~~~~~~~l~~------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQ--LADALSQFHAAVDG------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp HHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHh------------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 457789999999999999 99999999999875 4567999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcch---hHHHHH------------HHHHHcCCChHHHHHHHH
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCM---TTFQSL------------VAAYVGFGDLEIAETIVQ 152 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~ 152 (583)
+. .+..++..+..++...|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|...|+
T Consensus 90 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 KM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 64 357889999999999999999999999999875 4444 565555 444788888888888888
Q ss_pred HHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHH
Q 007970 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDT 232 (583)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 232 (583)
.+.... +.+..++..+..+|.+.|++++|
T Consensus 168 ~~~~~~---------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (450)
T 2y4t_A 168 KILEVC---------------------------------------------------VWDAELRELRAECFIKEGEPRKA 196 (450)
T ss_dssp HHHHHC---------------------------------------------------TTCHHHHHHHHHHHHHTTCGGGG
T ss_pred HHHHhC---------------------------------------------------CCChHHHHHHHHHHHHCCCHHHH
Confidence 877531 45688899999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcC
Q 007970 233 VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL------------LKGYCQQL 300 (583)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~ 300 (583)
++.|+.+... .+.+..++..+...+...|++++|...++.+.+.. +.+...+..+ ...|...|
T Consensus 197 ~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 271 (450)
T 2y4t_A 197 ISDLKAASKL----KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDG 271 (450)
T ss_dssp HHHHHHHHHH----HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999886 35578899999999999999999999999998764 3455555554 78899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 301 QIDKAKELLREMADDAKIEPD--VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378 (583)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 378 (583)
++++|..+|+++++.....+. ...|..+..++.+.|++++|+..++++.... +.+...+..+..+|...|++++|..
T Consensus 272 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999875321111 4578888999999999999999999998763 4478899999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHH------------HHHcC-----CHHHHHHHHHHH
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEG------------YCRMG-----LVEEAKRIIERM 419 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~~ 419 (583)
.|+++.+ -.+.+...+..+..+ |...| +.+++.+.++++
T Consensus 351 ~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 351 DYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 9999987 334456666666633 33333 456667777763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-22 Score=205.30 Aligned_cols=440 Identities=10% Similarity=0.034 Sum_probs=296.5
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
...|..+...+.+.|+ +++|+..|+++.+. .|.++.+|..+..+|.+.|++++|++.|+.+.+.+.
T Consensus 25 a~~~~~~g~~~~~~g~--~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 90 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKN--FNEAIKYYQYAIEL------------DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90 (537)
T ss_dssp HHHHHHHHHHHHHTTC--CC-CHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcc--HHHHHHHHHHHHhh------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3456666677777777 77777777777764 344677777777777777777777777777776543
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 169 (583)
.+..++..+..++...|++++|...|+ .... .|+. ....+..+...+....|...++.+....+..........
T Consensus 91 -~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~ 164 (537)
T 3fp2_A 91 -DHSKALLRRASANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN 164 (537)
T ss_dssp -TCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH
T ss_pred -chHHHHHHHHHHHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH
Confidence 356667777777777777777777775 3222 1221 111233334444456666666666443211100000000
Q ss_pred hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHh--------cCChhHHHHHHHHHH
Q 007970 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS-RIYTTLMKGYMN--------EGRVSDTVRMLGAMR 240 (583)
Q Consensus 170 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~~~ 240 (583)
.....+....+...+...+... ....+.. .....+...+.. .|++++|..+|+.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 165 TSLASFFGIFDSHLEVSSVNTS---------------SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp HHHHHHHHTSCHHHHHHTSCCC---------------CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcChHHHHHHHhhc---------------cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0000000000000000000000 0011221 122333333222 258899999999998
Q ss_pred hcccCCCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 241 RQEDNASHPD-------HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 241 ~~~~~~~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
+. .+.+ ..++..+...+...|++++|...++.+.+.. |+...+..+...|...|++++|...++++.
T Consensus 230 ~~----~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 230 SA----NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred HH----CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 75 2223 2356677788889999999999999999864 558889999999999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 007970 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDI 393 (583)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 393 (583)
+.. +.+..++..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|..+++.+.+. .+.+.
T Consensus 304 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 378 (537)
T 3fp2_A 304 DLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLP 378 (537)
T ss_dssp HHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCT
T ss_pred ccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence 653 4567889999999999999999999999998864 445778899999999999999999999999873 45667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHhHHHHHHHHHHHHh
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENG-----FYPNVATYGSLANGISLA----------RKPGEALLLWKEIKERC 458 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~ 458 (583)
..+..+..++...|++++|.+.|+++.+.. .......+..+...+... |++++|+..++++.+.
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~- 457 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL- 457 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-
Confidence 889999999999999999999999987532 111223345556677777 9999999999999986
Q ss_pred hhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 459 EVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.| +..++..+..+|.+.|++++|.+.+++..+. .|+..
T Consensus 458 -----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~ 496 (537)
T 3fp2_A 458 -----------------DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL--ARTMD 496 (537)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--CH
T ss_pred -----------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcH
Confidence 44 4588999999999999999999999999863 34443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-21 Score=194.71 Aligned_cols=438 Identities=11% Similarity=0.038 Sum_probs=311.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
....+..+...+.+.|++++|+..|+.+.+... .+..+|..+..++.+.|++++|++.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 467889999999999999999999999998763 478889999999999999999999999999986 667889999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (583)
++...|++++|...|+.+ ...++...... ..+...+...++...++.++.... +..+.....
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~l~~~~-----------~~~~~~~~~ 163 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASI------EPMLERNLNKQAMKVLNENLSKDE-----------GRGSQVLPS 163 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------------CHHHHHHHHHHHHHHHHHCC------------------CCCCC
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHH------HHHHHHHHHHHHHHHHHHHHHhCc-----------cccccccch
Confidence 999999999999999744 32222211100 000111122345555555541100 001111122
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHH-HHHHHHHHHH--------HcCChHHHHHHHHHHHhCCCCCCH-
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV-TYTTVVSALV--------KAGSMDRARQVLAEMTRIGVPANR- 286 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~~~~ll~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~- 286 (583)
...+..+....+.+.+...+..... ..+... ....+...+. ..|++++|..+++.+.+.. +.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~ 237 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSN-----YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDP 237 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCS-----SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccc-----cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcch
Confidence 3344445555555544443332221 122221 2222222221 2257899999999998764 3332
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 287 ------ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY 360 (583)
Q Consensus 287 ------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 360 (583)
.++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|...|+++.... +.+..++
T Consensus 238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 313 (537)
T 3fp2_A 238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTY 313 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHH
Confidence 34666778888999999999999999875 4668889999999999999999999999998864 4568889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 361 TTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL 440 (583)
Q Consensus 361 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 440 (583)
..+...+...|++++|...|+++.+. .+.+...+..+..++...|++++|.++++++.+.. +.+...+..+...+..
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 390 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTD 390 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 99999999999999999999999873 34567889999999999999999999999998863 4467788999999999
Q ss_pred cCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHcCC
Q 007970 441 ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA----------AFFRKALEIVACMEEHGI 510 (583)
Q Consensus 441 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 510 (583)
.|++++|+..|+++.+...... ........+..+..++.+. |++++|...++++.+.
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-- 457 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQE-----------KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-- 457 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCS-----------SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--
T ss_pred hCCHHHHHHHHHHHHHcCCcch-----------hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--
Confidence 9999999999999988642200 1122234455667788888 9999999999999864
Q ss_pred CCCH-HHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 511 PPNK-TKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 511 ~p~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
.|+. ..+..+ ..++... |++++|.+.+++.
T Consensus 458 ~p~~~~~~~~l-~~~~~~~-----------------g~~~~A~~~~~~a 488 (537)
T 3fp2_A 458 DPRSEQAKIGL-AQLKLQM-----------------EKIDEAIELFEDS 488 (537)
T ss_dssp CTTCHHHHHHH-HHHHHHT-----------------TCHHHHHHHHHHH
T ss_pred CCCCHHHHHHH-HHHHHHh-----------------ccHHHHHHHHHHH
Confidence 4443 344433 5566555 7778887777654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-19 Score=169.51 Aligned_cols=315 Identities=10% Similarity=0.044 Sum_probs=186.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
|+..+..+...+...|++++|+..|+.+.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345566666666666777777777766666432 245566666666666666666666666666653 335556666666
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCC---CCH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFA---PNS 213 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 213 (583)
++...|++++|...|+.+.... + .+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~---------------------------------------------------~~~~~~~ 108 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN---------------------------------------------------PSEQEEK 108 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC---------------------------------------------------CCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcC---------------------------------------------------CcccChH
Confidence 6666666666666666665421 1 123
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
..+..+...+. ...+..+...+...|++++|..+++.+.+.. +.+...+..+.
T Consensus 109 ~~~~~l~~~~~--------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 109 EAESQLVKADE--------------------------MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp HHHHHHHHHHH--------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHH--------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 33333310000 0001112344455555555555555555443 33445555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH------------H
Q 007970 294 KGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY------------T 361 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------------~ 361 (583)
.++...|++++|...++++.+. .+.+...+..+...+...|++++|...|+...+.. +.+...+ .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHH
Confidence 5555555555555555555432 13344555555555555555555555555555432 1122222 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDI----VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
.+...+...|++++|...++++.+. .+.+. ..+..+..++...|++++|++.+++..+. .+.+..++..+...
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 2355677888888888888888763 22233 23555778888889999999999888875 23467788888888
Q ss_pred HHhcCCHhHHHHHHHHHHHH
Q 007970 438 ISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~ 457 (583)
+...|++++|...|+++.+.
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 88899999999999988864
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-18 Score=169.05 Aligned_cols=330 Identities=12% Similarity=0.104 Sum_probs=205.8
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
|+..|..+...+...|+ +++|+..|+++.+. .|.+..++..+...+...|++++|+..|+.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~g~--~~~A~~~~~~~l~~------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 67 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQ--LADALSQFHAAVDG------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK 67 (359)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhh------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 56778888999999999 99999999999885 45578899999999999999999999999999865
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCC---cchhHHHHH------------HHHHHcCCChHHHHHHHHH
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGIT---LCMTTFQSL------------VAAYVGFGDLEIAETIVQA 153 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~ 153 (583)
. .+...+..+...+...|++++|...++++.+.. + .+...+..+ ...+...|++++|...++.
T Consensus 68 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 68 M-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3 366889999999999999999999999998874 3 344444444 3444455555555555554
Q ss_pred HHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 007970 154 MREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTV 233 (583)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 233 (583)
+.... +.+..++..+..++...|++++|.
T Consensus 146 ~~~~~---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~ 174 (359)
T 3ieg_A 146 ILEVC---------------------------------------------------VWDAELRELRAECFIKEGEPRKAI 174 (359)
T ss_dssp HHHHC---------------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhC---------------------------------------------------CCchHHHHHHHHHHHHCCCHHHHH
Confidence 44311 233445555555555555555555
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
+.++.+... .+.+..++..+...+...|++++|...++.+.+.. +.+...+..+.. +.
T Consensus 175 ~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~-----------------~~ 232 (359)
T 3ieg_A 175 SDLKAASKL----KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ-----------------VK 232 (359)
T ss_dssp HHHHHHHTT----CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH-----------------HH
T ss_pred HHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH-----------------HH
Confidence 555555543 23344455555555555555555555555554432 112221111100 00
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 007970 314 DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK----ISYTTLMKAFALSSQPKLANKVFDEMLRDPRV 389 (583)
Q Consensus 314 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 389 (583)
.......+...+...|++++|...++++.... +.+. ..+..+..++...|++++|...++.+.+ ..
T Consensus 233 -------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~ 302 (359)
T 3ieg_A 233 -------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ--ME 302 (359)
T ss_dssp -------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred -------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hC
Confidence 00011122445666677777777776666642 1122 2233455666677777777777777765 23
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+.+..++..+..++...|++++|.+.|+++.+.. +-+...+..+..+.
T Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQ 350 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 4456677777777777777777777777777642 22344555555444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-16 Score=159.94 Aligned_cols=355 Identities=12% Similarity=0.044 Sum_probs=293.6
Q ss_pred CcCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCc
Q 007970 55 KPDTAAYNAVLNACAN----LGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCAR----ASRKHLLVFVLERILEMGITL 126 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~ 126 (583)
+.++.++..+...|.. .+++++|+.+|+...+.| +...+..|...|.. .+++++|.+.|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3578888889999988 899999999999998864 56778888888988 899999999999998876
Q ss_pred chhHHHHHHHHHHc----CCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCC
Q 007970 127 CMTTFQSLVAAYVG----FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP 202 (583)
Q Consensus 127 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (583)
++..+..|...|.. .+++++|...|+...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~---------------------------------------------- 143 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE---------------------------------------------- 143 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------------------------------------------
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----------------------------------------------
Confidence 56777778888888 7899999999988866
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH----cCChHHHHHHH
Q 007970 203 PLLPKTFAPNSRIYTTLMKGYMN----EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK----AGSMDRARQVL 274 (583)
Q Consensus 203 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~ 274 (583)
.-+..++..+...|.. .+++++|++.|++..+. .+...+..+...|.. .++.++|...|
T Consensus 144 -------~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 210 (490)
T 2xm6_A 144 -------QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------GNVWSCNQLGYMYSRGLGVERNDAISAQWY 210 (490)
T ss_dssp -------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence 2356677788888887 78999999999998775 257778888888887 88999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 007970 275 AEMTRIGVPANRITYNILLKGYCQ----QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL----IDDSAGALTFFN 346 (583)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~ 346 (583)
+...+.+ +...+..+...|.. .+++++|..+|++..+. .+...+..+...|.. .+++++|+..|+
T Consensus 211 ~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 211 RKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ----GNSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 9998875 56777788888886 78999999999998752 456677777777777 899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q 007970 347 EMRARGIAPTKISYTTLMKAFALS-----SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG---LVEEAKRIIER 418 (583)
Q Consensus 347 ~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~ 418 (583)
+..+.| +...+..+...+... +++++|...|++..+. .+...+..+...|...| ++++|+++|++
T Consensus 284 ~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 284 KSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 988765 556777777777776 8999999999998873 35667788888888766 78999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHh---
Q 007970 419 MKENGFYPNVATYGSLANGISL----ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR--- 491 (583)
Q Consensus 419 ~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 491 (583)
..+.| +...+..+...|.. .+++++|+.+|++..+. .+...+..|..+|.+
T Consensus 357 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------------------~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 357 AAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-------------------GLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------------------TCHHHHHHHHHHHHHTSS
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-------------------CCHHHHHHHHHHHHcCCC
Confidence 98864 67788888888888 78999999999998864 246677888888888
Q ss_pred -hhhHHHHHHHHHHHHHcCC
Q 007970 492 -AAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 492 -~g~~~~A~~~~~~~~~~~~ 510 (583)
.+++++|.+.+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 7999999999999987553
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-16 Score=156.38 Aligned_cols=351 Identities=15% Similarity=0.034 Sum_probs=295.4
Q ss_pred chHHHHHHHHHHHh----cCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHh----cCCcchHHHH
Q 007970 9 HVKAWSTVVSRLAA----SGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN----LGKPKKFLQL 80 (583)
Q Consensus 9 ~~~~~~~li~~~~~----~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~ 80 (583)
++..+..+...|.. .++ +++|+..|++..+. .++.++..|...|.. .+++++|+++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~--~~~A~~~~~~a~~~--------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKD--LTQAMDWFRRAAEQ--------------GYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCC--HHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcC--HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 55666666677766 566 99999999998762 467788899999998 9999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHc----CCChHHHHHHHH
Q 007970 81 FDQMHEFGAKPDVLTYNVMIKLCAR----ASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG----FGDLEIAETIVQ 152 (583)
Q Consensus 81 ~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 152 (583)
|+...+.| +...+..|...|.. .+++++|...|++..+.| ++..+..|..+|.. .+++++|.+.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99999865 66777778888888 789999999999999876 56778888888887 789999999998
Q ss_pred HHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh----cCC
Q 007970 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN----EGR 228 (583)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 228 (583)
...+ ..+..++..+...|.. .++
T Consensus 176 ~a~~-----------------------------------------------------~~~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 176 KAAE-----------------------------------------------------QGNVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp HHHH-----------------------------------------------------TTCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHH-----------------------------------------------------CCCHHHHHHHHHHHhcCCCCCcC
Confidence 8876 2467788888899988 899
Q ss_pred hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 007970 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK----AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ----QL 300 (583)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 300 (583)
.++|.++|++..+. .+...+..+...+.. .+++++|...|+...+.+ +...+..+..+|.. .+
T Consensus 203 ~~~A~~~~~~a~~~------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 203 DAISAQWYRKSATS------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp HHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 99999999998875 256677888888876 789999999999999875 56677778888888 89
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---C
Q 007970 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILI-----DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS---Q 372 (583)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~ 372 (583)
++++|..+|++..+. .+...+..+...|... +++++|+..|++..+.| +...+..+...+...| +
T Consensus 274 d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp CHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHH
T ss_pred CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCccc
Confidence 999999999999753 3667777888888877 89999999999999875 4567777777777756 7
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 007970 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----ARKP 444 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~ 444 (583)
+++|..+|++..+. .+...+..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++
T Consensus 347 ~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 347 HKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 89999999999873 467888999999998 899999999999999875 57788888888887 8999
Q ss_pred hHHHHHHHHHHHH
Q 007970 445 GEALLLWKEIKER 457 (583)
Q Consensus 445 ~~a~~~~~~~~~~ 457 (583)
++|..+|+++.+.
T Consensus 420 ~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 420 VQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC
Confidence 9999999999987
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-18 Score=163.21 Aligned_cols=285 Identities=8% Similarity=-0.024 Sum_probs=162.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 007970 92 DVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171 (583)
Q Consensus 92 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 171 (583)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++.+....
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------- 86 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY------------- 86 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------------
Confidence 33444455555555566666666666655553 3344455555555555566666666655554421
Q ss_pred cccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcccCCCCCC
Q 007970 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEG-RVSDTVRMLGAMRRQEDNASHPD 250 (583)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~ 250 (583)
+.+..+|..+...+...| ++++|.+.|+++... .+.+
T Consensus 87 --------------------------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~~ 124 (330)
T 3hym_B 87 --------------------------------------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL----EKTY 124 (330)
T ss_dssp --------------------------------------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT----CTTC
T ss_pred --------------------------------------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCcc
Confidence 233445555556666666 566666666665543 2223
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 007970 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330 (583)
Q Consensus 251 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 330 (583)
...|..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+. .+.+...+..+..
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~ 201 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGV 201 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 4455555666666666666666666655543 233444555666666666666666666666532 1334555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007970 331 GFILIDDSAGALTFFNEMRARG--------IAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 402 (583)
.+...|++++|...++++.... .+.....+..+..++...|++++|...|+++.+. .+.+...+..+..+
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 279 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYI 279 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHH
Confidence 6666666666666666655421 1223456666666777777777777777766652 23455666677777
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+.+.|++++|.+.++++.+.. +.+...+..+..++
T Consensus 280 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 280 HSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 777777777777777766542 23455556665555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-18 Score=161.81 Aligned_cols=296 Identities=11% Similarity=0.038 Sum_probs=249.4
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
.+.++..+..++..+...|++++|+++|+.+.+... .+...+..++..+...|++++|..+++++.+.. +.+...+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 455677788899999999999999999999988653 355667778888999999999999999999975 667889999
Q ss_pred HHHHHHcCC-ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCC
Q 007970 134 LVAAYVGFG-DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPN 212 (583)
Q Consensus 134 l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (583)
+...+...| ++++|...|+...... +.+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------------------------~~~ 124 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE---------------------------------------------------KTY 124 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC---------------------------------------------------TTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC---------------------------------------------------Ccc
Confidence 999999999 9999999999887631 345
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
..+|..+..++...|++++|++.++.+.+. .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 199 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEV 199 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHH----TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 778999999999999999999999999886 34456778889999999999999999999999875 5678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAK-------IEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
...+...|++++|...++++.+... .+....++..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 278 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGY 278 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 9999999999999999998876321 13345789999999999999999999999998864 446788999999
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HHcCCHH
Q 007970 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY-CRMGLVE 410 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 410 (583)
++...|++++|...|+++.+ -.+.+...+..+..++ ...|+.+
T Consensus 279 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 279 IHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999987 3455778888888877 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-16 Score=157.96 Aligned_cols=410 Identities=10% Similarity=0.056 Sum_probs=292.0
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
|...|..++.. .+.|+ +++|..+|+++++. .|.+...|...+..+.+.|++++|..+|+.+.+..
T Consensus 12 ~~~~w~~l~~~-~~~~~--~~~a~~~~e~al~~------------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQP--IDKARKTYERLVAQ------------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp CHHHHHHHHHH-HHSSC--HHHHHHHHHHHHTT------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHH-HHhCC--HHHHHHHHHHHHHH------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 56789988884 66777 99999999999874 56678899999999999999999999999998754
Q ss_pred CCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHHh-CCC-cchhHHHHHHHHHHc---------CCChHHHHHHHH
Q 007970 89 AKPDVLTYNVMIKLC-ARASRKHLLVF----VLERILEM-GIT-LCMTTFQSLVAAYVG---------FGDLEIAETIVQ 152 (583)
Q Consensus 89 ~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~ 152 (583)
|+...|...+... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|..+|+
T Consensus 77 --p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 77 --LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 6777777777533 35677777665 66666553 433 345677777666544 567777777777
Q ss_pred HHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----------
Q 007970 153 AMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKG---------- 222 (583)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~---------- 222 (583)
..... |.. .....|......
T Consensus 155 ~al~~-P~~-------------------------------------------------~~~~~~~~~~~~e~~~~~~~~~ 184 (530)
T 2ooe_A 155 RGCVN-PMI-------------------------------------------------NIEQLWRDYNKYEEGINIHLAK 184 (530)
T ss_dssp HHTTS-CCT-------------------------------------------------THHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHhc-hhh-------------------------------------------------hHHHHHHHHHHHHHhhchhHHH
Confidence 76652 110 001112111110
Q ss_pred -H--HhcCChhHHHHHHHHHH------hcccCCCCCC--------HHHHHHHHHHHHHc----CCh----HHHHHHHHHH
Q 007970 223 -Y--MNEGRVSDTVRMLGAMR------RQEDNASHPD--------HVTYTTVVSALVKA----GSM----DRARQVLAEM 277 (583)
Q Consensus 223 -~--~~~g~~~~A~~~~~~~~------~~~~~~~~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~ 277 (583)
. .+.+++..|..++.... ......++|+ ...|...+...... ++. +.+..+|+++
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 0 13455677777666532 1100012333 24555555433322 232 4778899998
Q ss_pred HhCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 278 TRIGVPANRITYNILLKGYCQ-------QLQID-------KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343 (583)
Q Consensus 278 ~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 343 (583)
+... +.+...|..++..+.+ .|+++ +|..+|++.++. -.+.+...|..++..+.+.|++++|..
T Consensus 265 l~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~ 342 (530)
T 2ooe_A 265 LLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHS 342 (530)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence 8763 5678889888888876 68987 899999999741 124468889999999999999999999
Q ss_pred HHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q 007970 344 FFNEMRARGIAPT-K-ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG-YCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 344 ~~~~m~~~~~~p~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~ 420 (583)
+|+++.+. .|+ . ..|..++..+.+.|+.++|.++|++..+.. +.+...|...+.. +...|++++|..+|++..
T Consensus 343 ~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 343 IYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp HHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 99999985 454 2 578888888889999999999999998742 2233333332222 346899999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHHHHHHHHHHHhhhhHHHH
Q 007970 421 ENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EELLDALADICVRAAFFRKA 498 (583)
Q Consensus 421 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A 498 (583)
+. .+.+...|..++..+...|+.++|..+|+++.... ...|+ ..+|...+......|+.+.+
T Consensus 419 ~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~---------------~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 419 KK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG---------------SLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC---------------CSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc---------------CCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 75 23468889999999999999999999999998752 22443 45888888888889999999
Q ss_pred HHHHHHHHH
Q 007970 499 LEIVACMEE 507 (583)
Q Consensus 499 ~~~~~~~~~ 507 (583)
..+.+.+.+
T Consensus 483 ~~~~~r~~~ 491 (530)
T 2ooe_A 483 LKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-18 Score=164.15 Aligned_cols=305 Identities=14% Similarity=-0.005 Sum_probs=231.6
Q ss_pred ccCCCCCCCcHH-HHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHH
Q 007970 175 SENEGDDDDDDE-VFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253 (583)
Q Consensus 175 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (583)
+...|++++|.. .|++.+.... .....+...+..+...+.+.|++++|+..|+++.+. .+.+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~ 100 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEE----------ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEA 100 (368)
T ss_dssp -----------CHHHHCCCCCCS----------SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhcCC----------CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHH
Confidence 334577777877 7776652110 000113456788999999999999999999999986 4557889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHH------
Q 007970 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNI------ 327 (583)
Q Consensus 254 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~------ 327 (583)
+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...++++..... .+...+..
T Consensus 101 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~ 177 (368)
T 1fch_A 101 WQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP--AYAHLVTPAEEGAG 177 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST--TTGGGCC-------
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHhh
Confidence 9999999999999999999999999875 56788999999999999999999999999976432 12222211
Q ss_pred ---------HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007970 328 ---------LIDGFILIDDSAGALTFFNEMRARGIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWN 397 (583)
Q Consensus 328 ---------li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (583)
.+..+...|++++|+..|+++....... +..++..+...+...|++++|...|+++.+ ..+.+..++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~ 255 (368)
T 1fch_A 178 GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWN 255 (368)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred hhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHH
Confidence 1333348899999999999998863221 578899999999999999999999999987 3456788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (583)
.+..++.+.|++++|++.|+++.+.. +.+..++..+..+|...|++++|+..|+++.+......... ......
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~~~ 328 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR------GEGGAM 328 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------------CCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcc------ccccch
Confidence 99999999999999999999998762 45678999999999999999999999999988642100000 000011
Q ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 478 DEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 478 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
...++..+..+|...|++++|..+++..
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 2578999999999999999999988743
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-18 Score=165.29 Aligned_cols=237 Identities=12% Similarity=-0.001 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH--
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN-- 290 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-- 290 (583)
..++..+..++...|++++|++.|+.+... .+.+..++..+...+...|++++|...++.+.+.. +.+...+.
T Consensus 98 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ 172 (368)
T 1fch_A 98 MEAWQYLGTTQAENEQELLAISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPA 172 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 444444444444445555555544444443 22234444444444444555555555554444432 11111111
Q ss_pred -------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 007970 291 -------------ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK 357 (583)
Q Consensus 291 -------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 357 (583)
..+..+...|++++|...|+++.+.....++..++..+...+...|++++|+..|+++.... +.+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 01233337889999999999887754333357888889999999999999999999988763 4467
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------CC
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY----------PN 427 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~----------p~ 427 (583)
..+..+...+...|++++|...|+++.+ ..+.+..++..+..+|.+.|++++|.+.|+++.+.... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 8888999999999999999999999877 34567888999999999999999999999998764211 11
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+|..+..+|...|++++|..++++..+.
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 678999999999999999999988765543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-17 Score=160.22 Aligned_cols=280 Identities=14% Similarity=-0.022 Sum_probs=221.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+...+..+...+.+.|++++|++.|+++.+. .+.+..+|..+...+...|++++|...|+.+.+.. +.+..++..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 138 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ----DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMA 138 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 4556889999999999999999999999986 45578899999999999999999999999999875 567889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEP--------DVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PTKISYTT 362 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ 362 (583)
+..+|...|++++|...|+++.+.....+ ....+..+...+...|++++|+.+|+++...... ++..++..
T Consensus 139 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 139 LAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999999976421000 1223345577889999999999999999886422 16889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442 (583)
Q Consensus 363 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 442 (583)
+...+...|++++|...|+++.+ ..+.+..+|..+..+|.+.|++++|++.|+++.+.. +.+..++..+..+|...|
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 99999999999999999999987 345678899999999999999999999999999862 345889999999999999
Q ss_pred CHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007970 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 443 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (583)
++++|+..|+++.+......... .......+..++..+..++...|+.+.+.++.+.
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQ-----QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCc-----ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999988642100000 0000011357889999999999999998887765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-15 Score=150.84 Aligned_cols=396 Identities=10% Similarity=0.044 Sum_probs=278.7
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
.|-+..+|..++.. .+.|++++|..+|+.+.+..+ .+...|..++..+.+.|+++.|..+|++++... |+...|..
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 45588899999984 789999999999999998642 467789999999999999999999999999874 57777777
Q ss_pred HHHHH-HcCCChHHHHH----HHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCC
Q 007970 134 LVAAY-VGFGDLEIAET----IVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKT 208 (583)
Q Consensus 134 l~~~~-~~~g~~~~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 208 (583)
.+... ...|+.+.|.+ +|+..... -|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~-------------------------------------------------~g 115 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDK-------------------------------------------------IG 115 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHH-------------------------------------------------TT
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHH-------------------------------------------------CC
Confidence 77533 45677777766 33333221 01
Q ss_pred C-CCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH-------------HHcC
Q 007970 209 F-APNSRIYTTLMKGYMN---------EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL-------------VKAG 265 (583)
Q Consensus 209 ~-~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~~g 265 (583)
. +++...|...+..... .|+++.|.++|++.... +..+....|....... .+.+
T Consensus 116 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~ 192 (530)
T 2ooe_A 116 MEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSR 192 (530)
T ss_dssp TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred CCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhH
Confidence 1 2456777777776654 78899999999999873 1222233443322211 1234
Q ss_pred ChHHHHHHHHHHH------hCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhcCCCCC
Q 007970 266 SMDRARQVLAEMT------RIG---VPAN--------RITYNILLKGYCQQ----LQI----DKAKELLREMADDAKIEP 320 (583)
Q Consensus 266 ~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~ 320 (583)
+++.|..++..+. +.. ++|+ ...|...+...... ++. ..+..+|++++... +.
T Consensus 193 ~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~ 270 (530)
T 2ooe_A 193 DYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GH 270 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CC
Confidence 5677777776532 221 2443 24555555433322 222 47778898887642 45
Q ss_pred CHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 007970 321 DVVSYNILIDGFIL-------IDDSA-------GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386 (583)
Q Consensus 321 ~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 386 (583)
+...|..++..+.. .|+++ +|..+|++..+.-.+.+...+..++..+.+.|++++|..+|+++.+.
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 67888888887775 78887 89999999986323446888899999999999999999999999873
Q ss_pred CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHHHHHhhhhhcc
Q 007970 387 PRVKVDI-VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARKPGEALLLWKEIKERCEVKKEG 464 (583)
Q Consensus 387 ~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~ 464 (583)
.+.+. ..|..++..+.+.|++++|.++|++..+.. +.+...+...+.. +...|++++|..+|+++.+..
T Consensus 351 --~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~------ 421 (530)
T 2ooe_A 351 --EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY------ 421 (530)
T ss_dssp --SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH------
T ss_pred --cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC------
Confidence 22233 589999999999999999999999998752 2233333333222 346899999999999999872
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHhhhhh
Q 007970 465 VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHG-IPPN--KTKYKKIYVEMHSRM 528 (583)
Q Consensus 465 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~~~~~~l~~~ 528 (583)
+.+...+..++..+.+.|+.++|..+|++....+ ..|+ ...|... +......
T Consensus 422 -----------p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~-~~~e~~~ 476 (530)
T 2ooe_A 422 -----------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF-LAFESNI 476 (530)
T ss_dssp -----------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH-HHHHHHS
T ss_pred -----------CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH-HHHHHHc
Confidence 3346889999999999999999999999998753 2332 2245443 4444443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-17 Score=156.84 Aligned_cols=280 Identities=12% Similarity=0.039 Sum_probs=208.4
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHH
Q 007970 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135 (583)
Q Consensus 56 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 135 (583)
.+...+..+...+.+.|++++|+.+|+.+.+... .+..+|..+..++...|++++|+..|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 3455688888888999999999999999887653 367788888899999999999999999988875 55688888899
Q ss_pred HHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHH
Q 007970 136 AAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215 (583)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (583)
.+|...|++++|...|+.+....++........ ......
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----------------------------------------~~~~~~ 179 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNK-----------------------------------------KGSPGL 179 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------------------------------------------
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhh-----------------------------------------ccchHH
Confidence 999999999999999998887766654322111 122345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (583)
+..+...+...|++++|++.|+++.... ...++..++..+...+...|++++|...++.+.+.. +.+..++..+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 180 TRRMSKSPVDSSVLEGVKELYLEAAHQN--GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGAT 256 (365)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHS--CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhC--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 6677788888888999999998888752 111257788888888888899999999998888764 5567888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHHHHHHHH
Q 007970 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA-----------PTKISYTTLM 364 (583)
Q Consensus 296 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----------p~~~~~~~l~ 364 (583)
|...|++++|+..|+++++.. +.+..++..+..+|...|++++|...|+++.+.... .+...+..+.
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 999999999999998887642 345778888888888999999999998887664211 1356788888
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 007970 365 KAFALSSQPKLANKVFDEM 383 (583)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~ 383 (583)
.++...|+.+.+..+...-
T Consensus 335 ~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 335 IALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHcCcHHHHHHHHHhh
Confidence 8899999999888877653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-16 Score=150.37 Aligned_cols=278 Identities=10% Similarity=-0.065 Sum_probs=223.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+...+..+...+...|++++|..+|+++.+. .+.+...+..+...+...|++++|...++.+.+.. +.+..++..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 94 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA----APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAA 94 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHH
Confidence 3456778889999999999999999999886 44578889999999999999999999999999874 567888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNIL--------------ID-GFILIDDSAGALTFFNEMRARGIAPT 356 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~ 356 (583)
+...|...|++++|...++++.+... .+...+..+ .. .+...|++++|...++++.... +.+
T Consensus 95 la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 171 (327)
T 3cv0_A 95 LAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PND 171 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCC
Confidence 99999999999999999999976432 122222222 22 3778899999999999998864 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
...+..+...+...|++++|...++++.+ ..+.+..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 248 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAV 248 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 88899999999999999999999999987 345678899999999999999999999999998763 446888999999
Q ss_pred HHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
.+...|++++|++.++++.+......... .......+..++..+..++.+.|++++|..++++.
T Consensus 249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPT-----GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTSCC----------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCcccccc-----ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999988631000000 00000003578899999999999999999998765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.4e-16 Score=154.29 Aligned_cols=393 Identities=11% Similarity=0.013 Sum_probs=229.1
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC-----C--CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC----
Q 007970 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEF-----G--AKP-DVLTYNVMIKLCARASRKHLLVFVLERILEMG---- 123 (583)
Q Consensus 56 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---- 123 (583)
.....||.|..++...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34678999999999999999999999987652 1 122 35689999999999999999999998877531
Q ss_pred ---CCcchhHHHHHHHHHHc--CCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCC
Q 007970 124 ---ITLCMTTFQSLVAAYVG--FGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINP 198 (583)
Q Consensus 124 ---~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 198 (583)
......++..+..++.. .+++++|+..|++..+..|+...+...+..........++.++|+..+++.+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~----- 203 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR----- 203 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-----
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-----
Confidence 11234566666555554 45789999999999887666555554444433333445555666666665541
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 007970 199 SSEPPLLPKTFAPNSRIYTTLMKGYMN----EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVL 274 (583)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 274 (583)
-.+.+..++..+...+.. .+++++|.+.+++.... .+.+...+..+...+...|++++|...+
T Consensus 204 ---------l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 204 ---------LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp ---------HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 112334444444433333 34555666666665553 3334555666666666666666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 007970 275 AEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIA 354 (583)
Q Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 354 (583)
+.+.+.. |.+..++..+..+|...+....+... .. ........+.++.|...++...... +
T Consensus 271 ~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~-----------~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~ 331 (472)
T 4g1t_A 271 KKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE-----------NG------MYGKRKLLELIGHAVAHLKKADEAN-D 331 (472)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC-----------------------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH-----------HH------HHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence 6666543 33444455444444321110000000 00 0000111233567888888887753 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH----HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 007970 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV----AWNMLVE-GYCRMGLVEEAKRIIERMKENGFYPNVA 429 (583)
Q Consensus 355 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 429 (583)
.+...+..+...+...|++++|...|++..+. .++.. .+..+.. .+...|++++|+..|.+..+. .|+..
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~ 406 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSR 406 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccH
Confidence 45677888889999999999999999998763 22222 2233322 345678999999999999874 56543
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
..... ...+.+++++..+. .| +..+|..+..+|...|++++|++.|++..+.
T Consensus 407 ~~~~~---------~~~l~~~~~~~l~~------------------~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 407 EKEKM---------KDKLQKIAKMRLSK------------------NGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHH---------HHHHHHHHHHHHHH------------------CC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHH---------HHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33222 23344555665554 44 4578999999999999999999999999864
Q ss_pred C-CCCCHHHH
Q 007970 509 G-IPPNKTKY 517 (583)
Q Consensus 509 ~-~~p~~~~~ 517 (583)
+ ..|+..+|
T Consensus 460 ~~~~p~a~~~ 469 (472)
T 4g1t_A 460 GSLIPSASSW 469 (472)
T ss_dssp ----------
T ss_pred CCCCCcHhhc
Confidence 3 34544433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-16 Score=146.75 Aligned_cols=277 Identities=10% Similarity=0.042 Sum_probs=218.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH--VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (583)
++-....|++..|+..++.... ..|+. .....+..+|...|+++.|+..++. .-+|+..++..+...+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~-----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP-----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc-----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHc
Confidence 4556678999999999887654 33443 4556778999999999999986654 23667788899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377 (583)
Q Consensus 298 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 377 (583)
..++.++|++.+++++...-.+.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999876322244667777788899999999999999987 467888999999999999999999
Q ss_pred HHHHHHhcCCCCCCCHH-H--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 378 KVFDEMLRDPRVKVDIV-A--WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 378 ~~~~~~~~~~~~~~~~~-~--~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
+.|+++.+. .|+.. . ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++
T Consensus 151 ~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 151 KELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999873 24422 1 122334445568999999999999987 4668889999999999999999999999999
Q ss_pred HHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhccc
Q 007970 455 KERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRK-ALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532 (583)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~ 532 (583)
.+. .|+ ..++..++.++...|+.++ +.++++++.+ +.|+..... ++..+
T Consensus 227 l~~------------------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~----d~~~~----- 277 (291)
T 3mkr_A 227 LDK------------------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIK----EYRAK----- 277 (291)
T ss_dssp HHH------------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHH----HHHHH-----
T ss_pred HHh------------------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHH----HHHHH-----
Confidence 987 554 5789999999999999976 6789999875 467665432 33333
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q 007970 533 HASQARQDRRRERKRAAEAFKFWL 556 (583)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~a~~~~~ 556 (583)
.+.++++..-+.
T Consensus 278 ------------~~~fd~~~~~~~ 289 (291)
T 3mkr_A 278 ------------ENDFDRLVLQYA 289 (291)
T ss_dssp ------------HHHHHHHHHHHS
T ss_pred ------------HHHHHHHHHHcC
Confidence 378888877663
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.3e-17 Score=155.34 Aligned_cols=283 Identities=12% Similarity=0.081 Sum_probs=112.2
Q ss_pred hcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 22 ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIK 101 (583)
Q Consensus 22 ~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 101 (583)
+.|+ .++|...++++.. +.+|..++.++.+.|++++|++.|.+. +|..+|..++.
T Consensus 15 ~~~~--ld~A~~fae~~~~-----------------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~ 69 (449)
T 1b89_A 15 HIGN--LDRAYEFAERCNE-----------------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQ 69 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccC--HHHHHHHHHhCCC-----------------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHH
Confidence 3455 7888888888732 348999999999999999999999653 57779999999
Q ss_pred HHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCC
Q 007970 102 LCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDD 181 (583)
Q Consensus 102 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (583)
.+...|++++|+..++...+. .+++.+.+.|+.+|.+.|+++++.++++
T Consensus 70 ~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------------- 118 (449)
T 1b89_A 70 AANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN----------------------------- 118 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-----------------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------------------------
Confidence 999999999999977777664 4567888999999999999998877652
Q ss_pred CCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 007970 182 DDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL 261 (583)
Q Consensus 182 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 261 (583)
.|+..+|+.+...|...|++++|...|..+ ..|..++.++
T Consensus 119 ----------------------------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L 158 (449)
T 1b89_A 119 ----------------------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTL 158 (449)
T ss_dssp ----------------------------CC----------------CTTTHHHHHHHT------------TCHHHHHHHH
T ss_pred ----------------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHH
Confidence 255567778888888888888888887755 2477788888
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|.+++|
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------hCHhhHHHHHHHHHHCCCHHHH
Confidence 8888888888887776 256777888888888888888865554332 2333344577778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 007970 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV------DIVAWNMLVEGYCRMGLVEEAKR 414 (583)
Q Consensus 342 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~ 414 (583)
+.+++...... +-....|+.+.-.+++- ++++..+.++.-...-.++| +...|..++..|...++++.|..
T Consensus 227 i~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 227 ITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 88887776553 44556666666555542 23333333332222223333 34567777778888888887765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-14 Score=151.03 Aligned_cols=380 Identities=14% Similarity=0.146 Sum_probs=215.8
Q ss_pred HHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCH
Q 007970 14 STVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDV 93 (583)
Q Consensus 14 ~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 93 (583)
...+.+|...|. +.+|+.+++++.-.... +..+....+.++....+. +..+..++.+..... +
T Consensus 989 s~~vKaf~~agl--p~EaieLLEKivl~~s~---------fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d- 1051 (1630)
T 1xi4_A 989 SVTVKAFMTADL--PNELIELLEKIVLDNSV---------FSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D- 1051 (1630)
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHcCCCc---------ccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c-
Confidence 444455555555 66666666666532100 112334444455555444 334444444444321 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 007970 94 LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173 (583)
Q Consensus 94 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (583)
..-+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.+++.. ...+...+.
T Consensus 1052 --~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn~--------p~vWsqLAK 1113 (1630)
T 1xi4_A 1052 --APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCNE--------PAVWSQLAK 1113 (1630)
T ss_pred --HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcCC--------HHHHHHHHH
Confidence 2224455556666666666666541 11111122221 45566666666654432 111223344
Q ss_pred cccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHH
Q 007970 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVT 253 (583)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 253 (583)
.+...|++++|++.|.+. .+...|..++.++.+.|++++|.+.|...++. .+++..
T Consensus 1114 Aql~~G~~kEAIdsYiKA-------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-----~~e~~I 1169 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA-------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-----ARESYV 1169 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc-------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----cccccc
Confidence 555666666666666552 45566666677777777777777777666553 122222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 007970 254 YTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333 (583)
Q Consensus 254 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 333 (583)
.+.++.+|++.++++....+. + .++...+..+...|...|++++|..+|..+ ..|..+..+|.
T Consensus 1170 dt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1170 ETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLV 1232 (1630)
T ss_pred cHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHH
Confidence 233666666666666433222 1 234455556666777777777777777654 25666777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007970 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413 (583)
Q Consensus 334 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 413 (583)
+.|++++|++.+++. .+..+|..+..+|...|++..|......+. .++..+..++..|.+.|.+++|+
T Consensus 1233 kLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred HhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHH
Confidence 777777777777654 245667777777777777777766654432 35566678888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC------CHHHHHHH
Q 007970 414 RIIERMKENGFYPNVATYGSLANGISLA--RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP------DEELLDAL 485 (583)
Q Consensus 414 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~~~~~~l 485 (583)
++++..+... .-....|..+...+++. ++..+++++|..-. .++| +...|.-+
T Consensus 1301 ~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri------------------ni~k~~r~~e~~~lW~el 1361 (1630)
T 1xi4_A 1301 TMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV------------------NIPKVLRAAEQAHLWAEL 1361 (1630)
T ss_pred HHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------------------ccchHhHHHHHHHHHHHH
Confidence 8887776542 22344565566555543 33444444444222 2233 34778899
Q ss_pred HHHHHhhhhHHHHHH
Q 007970 486 ADICVRAAFFRKALE 500 (583)
Q Consensus 486 ~~~~~~~g~~~~A~~ 500 (583)
+..|.+.|+++.|..
T Consensus 1362 v~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1362 VFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhcccHHHHHH
Confidence 999999999999983
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-15 Score=153.31 Aligned_cols=373 Identities=10% Similarity=-0.010 Sum_probs=228.1
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC-
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF- 87 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 87 (583)
.+..||.+...+...|+ +++|+..|++..+........ ...+....+|+.+..+|...|++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~--~~eAl~~~~kAl~~~~~~~~~---~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQ--NEAALECLRKAEELIQQEHAD---QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp CCHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHSGG---GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhcCcc---ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 46689999999999999 999999999987754332111 112335779999999999999999999999987653
Q ss_pred ----CC-C-CCHHHHHHHHHHHHhc--CChhHHHHHHHHHHHhCCCcchhHHHHHHHH---HHcCCChHHHHHHHHHHHh
Q 007970 88 ----GA-K-PDVLTYNVMIKLCARA--SRKHLLVFVLERILEMGITLCMTTFQSLVAA---YVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 88 ----~~-~-~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~ 156 (583)
+. . ....++..+..++... +++++|++.|++..+.. |.++..+..+..+ +...++.++|++.++...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 10 1 1245566665555554 57999999999999875 4456666665555 4556888899999998887
Q ss_pred hhHHHHHHHHhhh-hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 007970 157 GRRDVCKIIRELD-LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRM 235 (583)
Q Consensus 157 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (583)
..|+.......+. .....+...++.++|...+++.+. ..+.+..++..+...|...|++++|.+.
T Consensus 204 l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~--------------~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 269 (472)
T 4g1t_A 204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--------------KAPGVTDVLRSAAKFYRRKDEPDKAIEL 269 (472)
T ss_dssp HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH--------------HCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--------------hCccHHHHHHHHHHHHHHcCchHHHHHH
Confidence 7666555443332 223455677889999999998762 2356788999999999999999999999
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 236 LGAMRRQEDNASHPDHVTYTTVVSALVKA-------------------GSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
+.+..+. .+.+..++..+...|... +..+.|...++...+.. +.+...+..+...|
T Consensus 270 ~~~al~~----~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 270 LKKALEY----IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLH 344 (472)
T ss_dssp HHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHH
T ss_pred HHHHHHh----CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHH
Confidence 9999885 344566676666555332 22445556666555543 33445556666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCCHHH----HHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 297 CQQLQIDKAKELLREMADDAKIEPDVVS----YNILID-GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
...|++++|+..|++.++. .|+... +..+.. .....|++++|+..|++..+. .|+.......
T Consensus 345 ~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~-------- 411 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM-------- 411 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH--------
T ss_pred HHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH--------
Confidence 6667777777766666542 122211 111111 223456666666666666653 3332221111
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN 422 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 422 (583)
...+..+++...+ ..+.+..+|..+..+|...|++++|++.|++.++.
T Consensus 412 -~~~l~~~~~~~l~--~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 412 -KDKLQKIAKMRLS--KNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp -HHHHHHHHHHHHH--HCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred -HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1223334444333 12344556666666666666666666666666654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-16 Score=147.17 Aligned_cols=98 Identities=9% Similarity=0.010 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
...|-.....+...|+ +++|+..|+++.+. .+.+..++..+..++...|++++|...|+.+.+...
T Consensus 21 ~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 86 (327)
T 3cv0_A 21 HENPMEEGLSMLKLAN--LAEAALAFEAVCQA------------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86 (327)
T ss_dssp SSCHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHhcc--HHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 3445555566666666 77777777766653 334566666666677777777777777776666432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 122 (583)
.+..++..+...+...|++++|...++++.+.
T Consensus 87 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 118 (327)
T 3cv0_A 87 -KDIAVHAALAVSHTNEHNANAALASLRAWLLS 118 (327)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24556666666666677777777777666665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-14 Score=149.33 Aligned_cols=381 Identities=13% Similarity=0.130 Sum_probs=287.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 007970 61 YNAVLNACANLGKPKKFLQLFDQMHEFGA--KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138 (583)
Q Consensus 61 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (583)
-...+..|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..+..+++.... ...+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHHHHHH
Confidence 35678888899999999999999984321 12334455567666666 5566666666654221 33477888
Q ss_pred HcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 007970 139 VGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTT 218 (583)
Q Consensus 139 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (583)
...|.+++|..+|++..........+ +...+++++|.++.+++ .+..+|..
T Consensus 1060 i~lglyEEAf~IYkKa~~~~~A~~VL----------ie~i~nldrAiE~Aerv-------------------n~p~vWsq 1110 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDVNTSAVQVL----------IEHIGNLDRAYEFAERC-------------------NEPAVWSQ 1110 (1630)
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHH----------HHHHhhHHHHHHHHHhc-------------------CCHHHHHH
Confidence 89999999999999875321111111 12456778888888875 35789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007970 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298 (583)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (583)
+..++.+.|++++|++.|.+. .|...|..++.+|.+.|++++|.+.+....+.. +++...+.++.+|++
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA---------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 999999999999999999554 367788999999999999999999999888764 344445569999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378 (583)
Q Consensus 299 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 378 (583)
.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+
T Consensus 1180 l~rleele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1180 TNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hcCHHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 99998644432 2 356677888999999999999999999985 379999999999999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.+.+.. +..+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++....
T Consensus 1243 aarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~-- 1308 (1630)
T 1xi4_A 1243 GARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG-- 1308 (1630)
T ss_pred HHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--
Confidence 998872 5689999999999999999998876643 34667788999999999999999999988874
Q ss_pred hhhhccccCCCCCCCCCCCCH-HHHHHHHHHHH--hhhhHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHhhhhhh
Q 007970 459 EVKKEGVNADSDLPPPLKPDE-ELLDALADICV--RAAFFRKALEIVACMEEHGIPP------NKTKYKKIYVEMHSRMF 529 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~~~~~~l~~~~ 529 (583)
+.|.+ ..|.-|..+|. +-++..++.++|..-. +++| +...|..+ +-+|.+.
T Consensus 1309 ----------------LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~el-v~LY~~~- 1368 (1630)
T 1xi4_A 1309 ----------------LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAEL-VFLYDKY- 1368 (1630)
T ss_pred ----------------cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHH-HHHHHhc-
Confidence 35554 56655655554 5567777777776543 3333 34567776 7777776
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHh
Q 007970 530 TSKHASQARQDRRRERKRAAEAFKFWL 556 (583)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~a~~~~~ 556 (583)
|+++.|...+-
T Consensus 1369 ----------------~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1369 ----------------EEYDNAIITMM 1379 (1630)
T ss_pred ----------------ccHHHHHHHHH
Confidence 88888885543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-15 Score=140.52 Aligned_cols=249 Identities=13% Similarity=0.087 Sum_probs=201.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCCHHHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV-PANRITYNIL 292 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l 292 (583)
.....+.++|...|++++|+..++. . .+|+..++..+...+...++.++|++.++.+...+. |.+...+..+
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~---~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~l 107 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKP---S----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMA 107 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCT---T----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhcc---c----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHH
Confidence 3456678999999999999976643 1 456778889999999999999999999999988764 4467778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHh
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISY---TTLMKAFAL 369 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~~~~~ 369 (583)
..++...|++++|++.+++ +.+...+..++..+.+.|++++|...|+.+.+.. |+.... ..++..+..
T Consensus 108 a~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~ 178 (291)
T 3mkr_A 108 ASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAG 178 (291)
T ss_dssp HHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhC
Confidence 8999999999999999976 4678899999999999999999999999998863 553211 223344445
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH-HH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE-AL 448 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~-a~ 448 (583)
.|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++.+.. +-+..++..++..+...|+.++ +.
T Consensus 179 ~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~ 255 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTN 255 (291)
T ss_dssp TTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred chHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 68999999999999883 56789999999999999999999999999998863 4478899999999999999976 57
Q ss_pred HHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHH
Q 007970 449 LLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502 (583)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 502 (583)
++++++.+. .|+.... .+...+.+.|+++..-|
T Consensus 256 ~~~~~~~~~------------------~P~~~~~---~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 256 RYLSQLKDA------------------HRSHPFI---KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHH------------------CTTCHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh------------------CCCChHH---HHHHHHHHHHHHHHHHc
Confidence 899999876 7775432 34456667777766543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-16 Score=149.78 Aligned_cols=291 Identities=11% Similarity=0.090 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA 137 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (583)
+.+.+.|+. +.|++++|.++++++.. | .+|..|+.++.+.|++++|++.|.+ .+|..+|..++..
T Consensus 6 ~~a~~~ll~---~~~~ld~A~~fae~~~~----~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ 70 (449)
T 1b89_A 6 TSAVQVLIE---HIGNLDRAYEFAERCNE----P--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQA 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH---HccCHHHHHHHHHhCCC----h--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHH
Confidence 334444444 67889999999999843 3 4899999999999999999999965 2577799999999
Q ss_pred HHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHH
Q 007970 138 YVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYT 217 (583)
Q Consensus 138 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (583)
+...|++++|.+.++...+. .+++.+.+
T Consensus 71 ae~~g~~EeAi~yl~~ark~----------------------------------------------------~~~~~i~~ 98 (449)
T 1b89_A 71 ANTSGNWEELVKYLQMARKK----------------------------------------------------ARESYVET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhCCCHHHHHHHHHHHHHh----------------------------------------------------CccchhHH
Confidence 99999999999977766541 35567888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (583)
.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|..+|..+ ..|..++.++.
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~ 159 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV 159 (449)
T ss_dssp ----------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHH
Confidence 99999999999999887763 366679999999999999999999999976 36899999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 298 QQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLAN 377 (583)
Q Consensus 298 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 377 (583)
+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +..++.....++..|.+.|++++|.
T Consensus 160 ~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai 227 (449)
T 1b89_A 160 HLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELI 227 (449)
T ss_dssp TTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHH
Confidence 999999999999988 2789999999999999999999655443 2334455667889999999999999
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHhcCCHhHHHH
Q 007970 378 KVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFYP------NVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p------~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.+++.... .-+.....|+-|..+|++- ++++..+.++..... +++| +...|..+...|.+.++++.|..
T Consensus 228 ~lLe~aL~--le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 228 TMLEAALG--LERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHTT--STTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhC--CcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 99999986 3366788888888888876 455555555544321 2222 34568888889999999998876
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.6e-17 Score=166.65 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
-..|||++|++|++.|+ .++|..+|+.|.+... .|+.||+.+||+||.+|++.|++++|.++|++|.+.|
T Consensus 126 ~~~TynaLIdglcK~G~--leeA~~Lf~eM~~m~~--------kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G 195 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQ--LPLAHHLLVVHHGQRQ--------KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195 (1134)
T ss_dssp HHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHSHH--------HHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHhh--------cCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 45699999999999999 9999999998875211 3689999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHhCCCcchhHHHHHHHHHHc
Q 007970 89 AKPDVLTYNVMIKLCARASRK-HLLVFVLERILEMGITLCMTTFQSLVAAYVG 140 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (583)
+.||..||++||.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+
T Consensus 196 ~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 999999999999999999985 7899999999999999999999988865544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.9e-14 Score=129.64 Aligned_cols=224 Identities=11% Similarity=0.064 Sum_probs=150.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCC----HHHHH
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAK-IEPD----VVSYN 326 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~ 326 (583)
..+..+...+...|++++|..+++.+.+.. .+...+..+..+|...|++++|...++++.+... ..++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555666666666666666665554 4555566666666666666666666665544211 0111 35666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Q 007970 327 ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM 406 (583)
Q Consensus 327 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 406 (583)
.+...+...|++++|...|+++... .|+. ..+...|++++|...++.+.. ..+.+...+..+...+...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHh
Confidence 6666777777777777777776664 3332 235556777788888877776 2344566777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHH
Q 007970 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDAL 485 (583)
Q Consensus 407 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l 485 (583)
|++++|++.++++.+.. +.+..++..+..++...|++++|+..++++.+. .|+ ...+..+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~l 213 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------------------DPNFVRAYIRK 213 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------------------CHHHHHHHHHH
Confidence 88888888888887652 346777888888888888888888888888775 343 5777788
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH
Q 007970 486 ADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 486 ~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..++.+.|++++|...+++..+
T Consensus 214 ~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 214 ATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888888764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-16 Score=159.81 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 007970 322 VVSYNILIDGFILIDDSAGALTFFNEMRA---RGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNM 398 (583)
Q Consensus 322 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 398 (583)
..+|+++|.+|++.|+.++|.++|.+|.+ .|+.||..||+.||.+|++.|++++|.++|++|.+. |+.||..|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 34666666666666666666666655543 356666666666666666666666666666666553 66666666666
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 399 LVEGYCRMGL-VEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 399 li~~~~~~g~-~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 6666666665 35566666666666666666666666543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-14 Score=127.95 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCC----H
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV--PAN----R 286 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~ 286 (583)
...+..+...+...|++++|++.|+.+.+. . .+...+..+..++...|++++|...++.+.+... .++ .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL----H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 567889999999999999999999999987 3 6788999999999999999999999999887531 112 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.++..+..+|...|++++|...|+++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKE 148 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHH
Confidence 78889999999999999999999999875 3553 34566788999999999998863 3356778888999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 446 (583)
+...|++++|...|+++.+ ..+.+..++..+..+|.+.|++++|++.++++.+.. +.+...+..+..++...|++++
T Consensus 149 ~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 225 (258)
T 3uq3_A 149 YFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYAS 225 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999987 345678899999999999999999999999998863 4468889999999999999999
Q ss_pred HHHHHHHHHHH
Q 007970 447 ALLLWKEIKER 457 (583)
Q Consensus 447 a~~~~~~~~~~ 457 (583)
|...++++.+.
T Consensus 226 A~~~~~~a~~~ 236 (258)
T 3uq3_A 226 ALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999876
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-14 Score=126.85 Aligned_cols=199 Identities=15% Similarity=-0.000 Sum_probs=129.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007970 283 PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTT 362 (583)
Q Consensus 283 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 362 (583)
|++...+..+...+.+.|++++|...|++.++. -+.+...+..+..++...|++++|+..|++..+.. +.+...+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 345555666666666666666666666666542 13455566666666666666666666666666542 334556666
Q ss_pred HHHHHHhc-----------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 363 LMKAFALS-----------SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431 (583)
Q Consensus 363 l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 431 (583)
+..++... |++++|...|++..+ ..+.+...+..+..++...|++++|++.|++..+.. .+...+
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 66666666 888888888888876 334567778888888888888888888888888765 677888
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 432 GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
..+..++...|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|+..+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~------------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQ------------------APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH------------------STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888888888888876 454 4777788888888888888888887653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-14 Score=125.44 Aligned_cols=211 Identities=15% Similarity=0.051 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (583)
|++...+..+...+.+.|++++|+..|++..+. .+.+...+..+...+.+.|++++|+..++...+.. |.+...+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 76 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGY 76 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 355566666667777777777777777766654 33445666666666667777777777776666653 3445556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
..+..++...+ . . . .. .+...|++++|+..|++..+.. +-+...+..+..++..
T Consensus 77 ~~lg~~~~~~~-----------~-~-~---~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~ 130 (217)
T 2pl2_A 77 MVLSEAYVALY-----------R-Q-A---ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYAL 130 (217)
T ss_dssp HHHHHHHHHHH-----------H-T-C---SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-----------h-h-h---hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 66666555550 0 0 0 00 0001155555555555555542 2234555555555666
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.|++++|...|++..+. . .+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|+.
T Consensus 131 ~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 131 LGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp TTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------
T ss_pred cCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHH
Confidence 66666666666665552 1 455555666666666666666666666665541 2345555556666666666666666
Q ss_pred HHHHHH
Q 007970 450 LWKEIK 455 (583)
Q Consensus 450 ~~~~~~ 455 (583)
.+++..
T Consensus 207 ~~~~~~ 212 (217)
T 2pl2_A 207 AAALEH 212 (217)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 665544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-13 Score=125.15 Aligned_cols=245 Identities=13% Similarity=0.034 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHH
Q 007970 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD--VVSYNILID 330 (583)
Q Consensus 253 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~ 330 (583)
.+......+...|++++|+..++.+.+.. +.+...+..+..+|...|++++|+..++++++. ...++ ..+|..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHH
Confidence 44556667777888888888888877754 344557777777888888888888888888652 21222 345778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 007970 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (583)
.+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+...+...++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888763 445678889999999999999999999998873 4556778888873444556999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC------HHH
Q 007970 411 EAKRIIERMKENGFYPNVATYGSLANGISLARK---PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD------EEL 481 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~ 481 (583)
+|++.|+++.+.. +.+...+..+..++...|+ +++|+..++++.+.... .|+ ..+
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~~~~~~ 223 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP---------------GGAKYKDELIEA 223 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG---------------GGGGGHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc---------------ccccchHHHHHH
Confidence 9999999998862 3457788888888888888 88899999999886421 233 257
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
+..+...|.+.|++++|.+.+++..+ +.|+.......
T Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~ 260 (272)
T 3u4t_A 224 NEYIAYYYTINRDKVKADAAWKNILA--LDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 88889999999999999999999986 45766554433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-13 Score=136.53 Aligned_cols=380 Identities=13% Similarity=0.099 Sum_probs=245.0
Q ss_pred HHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHCCCCCC
Q 007970 16 VVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKP---KKFLQLFDQMHEFGAKPD 92 (583)
Q Consensus 16 li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~ 92 (583)
+...+.+.|+ +++|+.+|++..+. .++.++..+...|...|+. ++|+.+|+...+. +
T Consensus 9 la~~~~~~g~--~~~A~~~~~~aa~~--------------g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~ 68 (452)
T 3e4b_A 9 LANEALKRGD--TVTAQQNYQQLAEL--------------GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----S 68 (452)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHH--------------TCCTGGGTCC------------------------------
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----C
Confidence 4555666777 99999999988763 1334455666777777887 8999999888863 5
Q ss_pred HHHHHHHHHHHHhcC-----ChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHh
Q 007970 93 VLTYNVMIKLCARAS-----RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRE 167 (583)
Q Consensus 93 ~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 167 (583)
...+..|...+...+ ++++|...|++..+.|. +..+..|...|...+...++.+.++.+.....
T Consensus 69 ~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-------- 137 (452)
T 3e4b_A 69 PRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA-------- 137 (452)
T ss_dssp --CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--------
Confidence 556666666555554 77889999999988763 33666777777766655444443333332100
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCC
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS 247 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 247 (583)
..+...+..+...|...+.++++......+.+.- .
T Consensus 138 ------------------------------------------~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a---~ 172 (452)
T 3e4b_A 138 ------------------------------------------AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAA---L 172 (452)
T ss_dssp ------------------------------------------HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHH---T
T ss_pred ------------------------------------------CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHH---H
Confidence 1234567778888888886666655544333321 2
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCC
Q 007970 248 HPDHVTYTTVVSALVKAG---SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ----LQIDKAKELLREMADDAKIEP 320 (583)
Q Consensus 248 ~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~ 320 (583)
..++..+..+...|...| +.++|++.|+...+.| +++...+..|..+|... +++++|..+|++.. +.
T Consensus 173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g 246 (452)
T 3e4b_A 173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PG 246 (452)
T ss_dssp TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GG
T ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CC
Confidence 223337888888999999 8999999999999988 56666667777788665 79999999999986 23
Q ss_pred CHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHhcCCCCCCC
Q 007970 321 DVVSYNILIDG-F--ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS-----QPKLANKVFDEMLRDPRVKVD 392 (583)
Q Consensus 321 ~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~ 392 (583)
+...+..+... + ...+++++|+..|++..+.| +...+..+...|. .| ++++|..+|++.. +-+
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~ 317 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GRE 317 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTC
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCC
Confidence 55666666665 4 56899999999999999876 6677777777776 55 9999999998876 346
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHHhhhhhcc
Q 007970 393 IVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----ARKPGEALLLWKEIKERCEVKKEG 464 (583)
Q Consensus 393 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 464 (583)
...+..|...|.. ..++++|..+|++..+.|. ......|...|.. ..++.+|..+|+...+..
T Consensus 318 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g------ 388 (452)
T 3e4b_A 318 VAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD------ 388 (452)
T ss_dssp HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC------
Confidence 7778888877776 3499999999999998763 3345556666653 458999999999887652
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 465 VNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 465 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
.++.......+......++..+|.++.++..
T Consensus 389 -----------~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 389 -----------TPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp -----------CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2222222222233334456666777666654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-13 Score=120.42 Aligned_cols=208 Identities=12% Similarity=0.037 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
...+..+...+...|++++|.+.|+++... .+.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 111 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNY 111 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHH
Confidence 567889999999999999999999999886 44567889999999999999999999999998765 4577888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEP-DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
..+|...|++++|.++++++.. .+..| +...+..+...+...|++++|...|+++.... +.+...+..+...+...|
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcC
Confidence 9999999999999999999976 22234 56778888889999999999999999988863 446788888999999999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATY 431 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 431 (583)
++++|...++.+.+ ..+.+...+..+...+...|++++|.++++++.+. .|+...+
T Consensus 190 ~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 190 EYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp CHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred CHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 99999999999887 34567788888999999999999999999999875 3544433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-14 Score=131.32 Aligned_cols=250 Identities=10% Similarity=-0.049 Sum_probs=194.4
Q ss_pred hcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 304 (583)
..|++++|++.|+.+.+......+.+..++..+...+...|++++|...|+.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 357899999999999875210111246788899999999999999999999999875 5578899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007970 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384 (583)
Q Consensus 305 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 384 (583)
|...|+++++.. +.+...+..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++...
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998753 346788999999999999999999999999886 4554445555556677899999999998877
Q ss_pred cCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhh
Q 007970 385 RDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFY--P-NVATYGSLANGISLARKPGEALLLWKEIKERCEVK 461 (583)
Q Consensus 385 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 461 (583)
.. .+++...+. ++..+...++.++|.+.+.+..+.... | +..++..+...|...|++++|+..|+++.+.
T Consensus 172 ~~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 244 (275)
T 1xnf_A 172 EK--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN---- 244 (275)
T ss_dssp HH--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----
T ss_pred hc--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Confidence 63 344444444 667778888999999999988653211 0 1567888999999999999999999999864
Q ss_pred hccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHH
Q 007970 462 KEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIV 502 (583)
Q Consensus 462 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 502 (583)
.|+. +.....++...|++++|++.+
T Consensus 245 --------------~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 245 --------------NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --------------CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred --------------Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 5643 223355778889999998876
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.6e-13 Score=117.80 Aligned_cols=213 Identities=12% Similarity=0.047 Sum_probs=175.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (583)
+.+..++..+...+...|++++|.+.|+.+... .+.+...+..+...+...|++++|...++.+.+.. +.+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 79 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEIN 79 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHH
Confidence 345778899999999999999999999998886 44567888999999999999999999999998764 5577888
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 290 NILLKGYCQQ-LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 290 ~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
..+...+... |++++|...++++.+....+.+...+..+..++...|++++|+..++++.+.. +.+...+..+...+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHH
Confidence 8999999999 99999999999997621222336778888889999999999999999988763 445788888899999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007970 369 LSSQPKLANKVFDEMLRDPRVK-VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 432 (583)
..|++++|..+++.+.+. .+ .+...+..+...+...|+.++|..+++.+.+. .|+.....
T Consensus 159 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSR--VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HHTCHHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 999999999999998772 34 56777888888889999999999999998764 35444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-12 Score=119.61 Aligned_cols=201 Identities=12% Similarity=0.027 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 007970 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILID 330 (583)
Q Consensus 251 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~ 330 (583)
...+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|.+.++++.+.. +.+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHH
Confidence 5678888889999999999999999998864 5578889999999999999999999999997653 346788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCH
Q 007970 331 GFILIDDSAGALTFFNEMRARGIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLV 409 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 409 (583)
.+...|++++|..+++++...+..| +...+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999998733344 4667888888999999999999999999873 355688899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 410 EEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 410 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
++|.++++++.+. .+.+...+..+...+...|++++|.++++++.+.
T Consensus 192 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999875 3457778888899999999999999999999886
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-12 Score=125.78 Aligned_cols=230 Identities=12% Similarity=0.068 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCC-cchHHHHHHHHHHCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGK-PKKFLQLFDQMHEFG 88 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~ 88 (583)
...|..+...+...|+ +++|+..|+++++. .|-+..+|+.+..++...|+ +++|+..|+++.+..
T Consensus 97 ~~a~~~lg~~~~~~g~--~~~Al~~~~~al~l------------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDER--SERAFKLTRDAIEL------------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp HHHHHHHHHHHHHTCC--CHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCC--hHHHHHHHHHHHHh------------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 3456666666666666 77777777777663 33456667777777777775 777777777776654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhh
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIREL 168 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 168 (583)
. -+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..|+++....
T Consensus 163 P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---------- 230 (382)
T 2h6f_A 163 P-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---------- 230 (382)
T ss_dssp T-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----------
T ss_pred C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----------
Confidence 3 255666666666777777777777777777664 4566666666667777777777777766666532
Q ss_pred hhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCChhHH-----HHHHHHHHhc
Q 007970 169 DLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN-EGRVSDT-----VRMLGAMRRQ 242 (583)
Q Consensus 169 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A-----~~~~~~~~~~ 242 (583)
+.+..+|+.+..++.+ .|..++| ++.|++....
T Consensus 231 -----------------------------------------P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 231 -----------------------------------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp -----------------------------------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 3456666666666666 4444555 3666666654
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHH
Q 007970 243 EDNASHPDHVTYTTVVSALVKAG--SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQL---------QIDKAKELLRE 311 (583)
Q Consensus 243 ~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~ 311 (583)
.+-+...|..+...+...| ++++|++.+..+ +. .+.+...+..+..+|.+.| .+++|+++|++
T Consensus 270 ----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 270 ----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp ----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 2334556666666666655 466666666665 22 2445566666666666653 24666666666
Q ss_pred H
Q 007970 312 M 312 (583)
Q Consensus 312 ~ 312 (583)
+
T Consensus 344 l 344 (382)
T 2h6f_A 344 L 344 (382)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-12 Score=115.38 Aligned_cols=209 Identities=14% Similarity=0.067 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 4455556666666666666666666665432 2345566666666667777777777777666542 335666677777
Q ss_pred HHHhc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 366 AFALS-SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444 (583)
Q Consensus 366 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 444 (583)
.+... |++++|...++.+.+....+.+...+..+..++...|++++|++.++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 77777 77777777777776621122335667777778888888888888888877652 33567777778888888888
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCCCCCCCC-CCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLK-PDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
++|...++++.+.. + .+...+..+...+...|+.++|..+++.+.+ ..|+....
T Consensus 164 ~~A~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~ 218 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-----------------EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHH-----------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHHhC-----------------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHH
Confidence 88888888877652 3 3556666677777888888888888888764 24554443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-12 Score=125.03 Aligned_cols=247 Identities=10% Similarity=0.038 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCC-hHHHHHHHHHHHhhhHHHHHHHHhhhhcc
Q 007970 94 LTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD-LEIAETIVQAMREGRRDVCKIIRELDLED 172 (583)
Q Consensus 94 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (583)
..|..+...+...|++++|+..++++++.. +-+..+|..+..++...|+ +++|+..|++.....
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------------- 162 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------------- 162 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--------------
Confidence 345555556666666666666666666654 4455566666666666664 666666666665421
Q ss_pred ccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHH
Q 007970 173 YSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV 252 (583)
Q Consensus 173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 252 (583)
+.+..+|..+..++...|++++|+..|+++... .+-+..
T Consensus 163 -------------------------------------P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l----dP~~~~ 201 (382)
T 2h6f_A 163 -------------------------------------PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ----DAKNYH 201 (382)
T ss_dssp -------------------------------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCHH
T ss_pred -------------------------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CccCHH
Confidence 344556666666666666666666666666654 333456
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHhcCCCCCCHHHHH
Q 007970 253 TYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ-QLQIDKA-----KELLREMADDAKIEPDVVSYN 326 (583)
Q Consensus 253 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~ 326 (583)
.|..+..++...|++++|+..++.+++.. +.+...|+.+..++.. .|..++| +..|++.+... +.+...|.
T Consensus 202 a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~ 278 (382)
T 2h6f_A 202 AWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWN 278 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHH
Confidence 66666666666666666666666666554 3455566666666666 4443555 35555555432 23445566
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-hcCCCCCCCHH
Q 007970 327 ILIDGFILID--DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS---------QPKLANKVFDEM-LRDPRVKVDIV 394 (583)
Q Consensus 327 ~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~~~~~~~~ 394 (583)
.+...+...| ++++|++.+.++ +. .+.+...+..+..++.+.| ..++|.++|+++ .+ ..+....
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~ 354 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKE 354 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHH
Confidence 6655565555 456666666555 22 2334455555555555542 135666666665 33 2233334
Q ss_pred HHHHHHHHH
Q 007970 395 AWNMLVEGY 403 (583)
Q Consensus 395 ~~~~li~~~ 403 (583)
.|..+...+
T Consensus 355 ~w~~~~~~l 363 (382)
T 2h6f_A 355 YWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-11 Score=114.13 Aligned_cols=225 Identities=12% Similarity=0.009 Sum_probs=197.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCC
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK----AGSMDRARQVLAEMTRIGVPAN 285 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 285 (583)
+-+..++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...|+...+.+ +
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~ 73 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y 73 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C
Confidence 346788899999999999999999999998873 245778889999999 999999999999999876 7
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH
Q 007970 286 RITYNILLKGYCQ----QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL----IDDSAGALTFFNEMRARGIAPTK 357 (583)
Q Consensus 286 ~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~ 357 (583)
...+..+..+|.. .+++++|+..|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +.
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 146 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DG 146 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cH
Confidence 7888899999999 99999999999999773 378889999999999 999999999999999876 56
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHH
Q 007970 358 ISYTTLMKAFAL----SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVA 429 (583)
Q Consensus 358 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~ 429 (583)
..+..+...+.. .+++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +..
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 219 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 219 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence 777888888887 89999999999999874 356788889999999 999999999999999864 367
Q ss_pred HHHHHHHHHHh----cCCHhHHHHHHHHHHHH
Q 007970 430 TYGSLANGISL----ARKPGEALLLWKEIKER 457 (583)
Q Consensus 430 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 457 (583)
.+..+...|.. .+++++|++.|++..+.
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 78888888988 99999999999999886
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-13 Score=134.54 Aligned_cols=348 Identities=12% Similarity=0.026 Sum_probs=228.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 63 AVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRK---HLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 63 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
.+...+.+.|++++|+++|+...+.| +...+..|...|...|+. ++|...|++..+. ++..+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677888999999999999998865 334455566666777777 8999999888754 5566667777555
Q ss_pred cCC-----ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH
Q 007970 140 GFG-----DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214 (583)
Q Consensus 140 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (583)
..+ ++++|...|+..... -+..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-----------------------------------------------------g~~~ 107 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-----------------------------------------------------GEGN 107 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-----------------------------------------------------TCSS
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-----------------------------------------------------CCHH
Confidence 555 677888888877652 1222
Q ss_pred HHHHHHHHHHhcCChhHH---HHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDT---VRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
++..|...|...+..+++ .+.+...... .+...+..+...|...+.++++......+.+.-...++..+..
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~ 181 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVE 181 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHH
Confidence 667777777776655444 4444444433 1345667777888887755544444332222111223347888
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007970 292 LLKGYCQQL---QIDKAKELLREMADDAKIEPDVVSYNILIDGFILI----DDSAGALTFFNEMRARGIAPTKISYTTLM 364 (583)
Q Consensus 292 l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 364 (583)
|..+|...| +.++|+..|++..+. + .++...+..+...|... +++++|+..|++.. .| +...+..+.
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~-g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg 255 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSR-G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLA 255 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHT-T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHC-C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHH
Confidence 889999999 999999999999763 3 45666656777777655 79999999999987 43 455666666
Q ss_pred HH-H--HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 365 KA-F--ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG-----LVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 365 ~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
.. + ...+++++|..+|++..+. + +...+..|...|. .| ++++|+++|++.. .| +......|..
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~ 326 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQ 326 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHH
Confidence 65 4 5689999999999999873 3 6778888888887 55 9999999999987 43 6677777877
Q ss_pred HHHh----cCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHc
Q 007970 437 GISL----ARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR----AAFFRKALEIVACMEEH 508 (583)
Q Consensus 437 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 508 (583)
.|.. ..++++|+.+|++..+.. +......|..+|.. ..+.++|..+++...+.
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g-------------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARNG-------------------QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTTT-------------------CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhhC-------------------hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 7766 349999999999987641 23345566666654 45899999999999876
Q ss_pred CC
Q 007970 509 GI 510 (583)
Q Consensus 509 ~~ 510 (583)
|.
T Consensus 388 g~ 389 (452)
T 3e4b_A 388 DT 389 (452)
T ss_dssp CC
T ss_pred CC
Confidence 63
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-13 Score=124.26 Aligned_cols=235 Identities=11% Similarity=0.046 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN--RITYNI 291 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ 291 (583)
..+......+...|++++|++.|+.+.+. .+.+...+..+...+...|++++|+..++.+.+....+. ...+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 45667788999999999999999999885 334456888899999999999999999999998432222 334888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
+..+|...|++++|...|++..+.. +.+..++..+...|...|++++|+..|++..+. .+.+...+..+...+...+
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999998753 345678999999999999999999999998876 2445677777773444556
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhc
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL---VEEAKRIIERMKENG-FYPN------VATYGSLANGISLA 441 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~ 441 (583)
++++|...|+++.+ ..+.+...+..+..++...|+ +++|...++++.+.. -.|+ ..++..+...|...
T Consensus 157 ~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 157 EYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp CHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 99999999999987 345567888888999999888 888999999887531 1233 25778888899999
Q ss_pred CCHhHHHHHHHHHHHH
Q 007970 442 RKPGEALLLWKEIKER 457 (583)
Q Consensus 442 g~~~~a~~~~~~~~~~ 457 (583)
|++++|++.|+++.+.
T Consensus 235 ~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 235 RDKVKADAAWKNILAL 250 (272)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999987
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-13 Score=132.89 Aligned_cols=282 Identities=13% Similarity=0.020 Sum_probs=215.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----C
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD----HVTYTTVVSALVKAGSMDRARQVLAEMTRI----G 281 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~ 281 (583)
......+......+...|++++|...|+++.... +.+ ...+..+...+...|++++|...++.+... +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 4567788889999999999999999999998862 223 357888889999999999999999987643 2
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCC-------------------
Q 007970 282 VP-ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDD------------------- 337 (583)
Q Consensus 282 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~------------------- 337 (583)
.. ....++..+...|...|++++|...+++..+.....++ ..++..+...|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 11 12557788889999999999999999887653211122 4478888889999999
Q ss_pred -HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcC
Q 007970 338 -SAGALTFFNEMRAR----GIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMG 407 (583)
Q Consensus 338 -~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g 407 (583)
+++|...+++.... +..| ...++..+...+...|++++|...+++..+.....++ ..++..+..+|...|
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 99999999886542 1111 1346778888999999999999999988652111122 347888999999999
Q ss_pred CHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHH
Q 007970 408 LVEEAKRIIERMKENGF-YPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EEL 481 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~ 481 (583)
++++|...+++..+... .++ ..++..+...|...|++++|+..++++.+..... +-.+. ..+
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~ 309 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------------NDRIGEGRA 309 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc------------CCcHHHHHH
Confidence 99999999999874210 112 4577888889999999999999999988764320 00111 467
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+..+..+|...|++++|.+.+++..+
T Consensus 310 ~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 310 CWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999999999999864
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-12 Score=114.86 Aligned_cols=224 Identities=13% Similarity=0.024 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ----QLQIDKAKELLREMADDAKIEPDVVSY 325 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 325 (583)
+..++..+...+...|++++|...|+...+. .+...+..+...|.. .+++++|...|++..+. .+...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 5677888889999999999999999999984 356788889999999 99999999999999764 378889
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHH
Q 007970 326 NILIDGFIL----IDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL----SSQPKLANKVFDEMLRDPRVKVDIVAWN 397 (583)
Q Consensus 326 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 397 (583)
..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHH
Confidence 999999999 999999999999999875 77888899999998 99999999999999874 2 677888
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHHhhhhhccccCCC
Q 007970 398 MLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----ARKPGEALLLWKEIKERCEVKKEGVNADS 469 (583)
Q Consensus 398 ~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (583)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..+++..+.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------------ 215 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL------------ 215 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC------------
Confidence 88889988 999999999999999864 56788888899999 99999999999999875
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHcC
Q 007970 470 DLPPPLKPDEELLDALADICVR----AAFFRKALEIVACMEEHG 509 (583)
Q Consensus 470 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 509 (583)
.| ...+..+..+|.+ .+++++|.+.+++..+.+
T Consensus 216 ------~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 216 ------EN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp ------TC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ------CC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 33 6677888899998 999999999999998754
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-13 Score=122.24 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
...|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE----NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp -------------------CCTTHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 334455555555555555555555555543 23334445555555555555555555555554432 2234444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ 372 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 372 (583)
...|. ..|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 98 a~~~~------------------------------------~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 98 GNVYV------------------------------------VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHHHH------------------------------------HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSC
T ss_pred HHHHH------------------------------------HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc
Confidence 44444 4455555555544444432 2234444555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 007970 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWK 452 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 452 (583)
+++|...++++.+ ..+.+...+..+...+.+.|++++|++.++++.+.. +.+..++..+..++...|++++|...++
T Consensus 141 ~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 141 PKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5555555555544 123345555566666666666666666666665541 2345556666666666666666666666
Q ss_pred HHHHH
Q 007970 453 EIKER 457 (583)
Q Consensus 453 ~~~~~ 457 (583)
++.+.
T Consensus 218 ~~~~~ 222 (243)
T 2q7f_A 218 KAIDI 222 (243)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 66654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-13 Score=121.12 Aligned_cols=201 Identities=15% Similarity=0.135 Sum_probs=115.6
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
...+|..+...+...|++++|..+|+.+.+... .+...+..+...+...|++++|+..++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 455566666666666666666666666665432 245556666666666677777777666666654 445566666666
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (583)
++...|++++|...++.+.... +.+..++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~---------------------------------------------------~~~~~~~ 128 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG---------------------------------------------------MENGDLF 128 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT---------------------------------------------------CCSHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC---------------------------------------------------CCCHHHH
Confidence 6667777777777766665421 2345566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY 296 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 296 (583)
..+...+...|++++|.+.++++... .+.+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|
T Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 129 YMLGTVLVKLEQPKLALPYLQRAVEL----NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTY 203 (243)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 66666677777777777777766654 33455666666666777777777777777666543 34556666677777
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 007970 297 CQQLQIDKAKELLREMADD 315 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~~~ 315 (583)
...|++++|...++++.+.
T Consensus 204 ~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 204 AYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHTTCTTHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHcc
Confidence 7777777777777766553
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-13 Score=126.15 Aligned_cols=253 Identities=9% Similarity=-0.018 Sum_probs=194.3
Q ss_pred cccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCH
Q 007970 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH 251 (583)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 251 (583)
+......|++++|+..|++++.... ...+.+..++..+..++...|++++|.+.|+++... .+.+.
T Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~ 77 (275)
T 1xnf_A 12 AVPLQPTLQQEVILARMEQILASRA----------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMP 77 (275)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTSSC----------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCH
T ss_pred eeccCccchHHHHHHHHHHHHhccc----------ccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcH
Confidence 3344566788888888888773210 001234778999999999999999999999999986 44568
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 007970 252 VTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDG 331 (583)
Q Consensus 252 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~ 331 (583)
..|..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+. .|+.......+..
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~ 153 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYL 153 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHH
Confidence 899999999999999999999999999864 456889999999999999999999999999875 3444444444555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHHHc
Q 007970 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD-----IVAWNMLVEGYCRM 406 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~ 406 (583)
+...|++++|...+++..... +++...+ .++..+...++.++|...+....+. .|. ..++..+..+|.+.
T Consensus 154 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~ 228 (275)
T 1xnf_A 154 AEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSL 228 (275)
T ss_dssp HHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHc
Confidence 577799999999998887753 4444444 4677778888899999999988762 221 57888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 007970 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLW 451 (583)
Q Consensus 407 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 451 (583)
|++++|...|+++.+. .|+. +.....++...|++++|++.+
T Consensus 229 g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 229 GDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999975 4532 233355677888899888776
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-13 Score=126.75 Aligned_cols=279 Identities=13% Similarity=0.014 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-C
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD----HVTYTTVVSALVKAGSMDRARQVLAEMTRI----GV-P 283 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~ 283 (583)
...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++...+. +. +
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 80 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 80 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH
Confidence 3456667788999999999999999998862 223 467888899999999999999999987643 21 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCC--------------------HH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDD--------------------SA 339 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~--------------------~~ 339 (583)
....++..+...|...|++++|...+++..+.....++ ..++..+...+...|+ ++
T Consensus 81 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 81 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 23567788899999999999999999887653221223 3477888888999999 99
Q ss_pred HHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCCHH
Q 007970 340 GALTFFNEMRAR----GIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 340 ~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 410 (583)
+|...+++.... +..+ ....+..+...+...|++++|...+++..+.....++ ..++..+...+...|+++
T Consensus 161 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 161 AAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 999998886542 1111 2346777888899999999999999988652111112 347888899999999999
Q ss_pred HHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHH
Q 007970 411 EAKRIIERMKENGF-YPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDA 484 (583)
Q Consensus 411 ~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ 484 (583)
+|.+.+++..+... .++ ..++..+...+...|++++|...++++.+..... +-.+ ...++..
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~ 308 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------------KDRIGEGRACWS 308 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc------------CCcHHHHHHHHH
Confidence 99999998874210 112 4577788888999999999999999988763210 0011 1357788
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Q 007970 485 LADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 485 l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+..+|.+.|++++|...+++..+
T Consensus 309 la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 309 LGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 89999999999999999999875
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=9e-13 Score=129.80 Aligned_cols=279 Identities=15% Similarity=0.016 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhC----C-CC
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH----VTYTTVVSALVKAGSMDRARQVLAEMTRI----G-VP 283 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~ 283 (583)
...+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...++++.+. + .+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 4456677889999999999999999998862 2233 47888889999999999999999988753 1 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCC-----------------HHHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAK----IEPDVVSYNILIDGFILIDD-----------------SAGAL 342 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~-----------------~~~a~ 342 (583)
....++..+...|...|++++|...+++...... ......++..+...|...|+ +++|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 3456778889999999999999999988765311 11234578888889999999 99999
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 007970 343 TFFNEMRAR----GIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVEEAK 413 (583)
Q Consensus 343 ~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~ 413 (583)
..+++.... +..+ ....+..+...+...|++++|...+++..+......+ ..++..+..+|...|++++|.
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 998886542 1111 2346778888999999999999999988652111112 237888999999999999999
Q ss_pred HHHHHHHHCC--CC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHH
Q 007970 414 RIIERMKENG--FY---PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALAD 487 (583)
Q Consensus 414 ~~~~~~~~~g--~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~ 487 (583)
+.+++..+.. .. ....++..+...+...|++++|+..++++.+..... +-.+ ...++..+..
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~ 351 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL------------GDRIGEARACWSLGN 351 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC------------CChHHHHHHHHHHHH
Confidence 9999887531 11 114677888889999999999999999988764221 0011 1357888899
Q ss_pred HHHhhhhHHHHHHHHHHHHH
Q 007970 488 ICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 488 ~~~~~g~~~~A~~~~~~~~~ 507 (583)
+|.+.|++++|.+.+++..+
T Consensus 352 ~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 352 AHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999875
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.8e-13 Score=130.34 Aligned_cols=233 Identities=13% Similarity=0.028 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHHHcCC--------------------hHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH--PDHVTYTTVVSALVKAGS--------------------MDRA 270 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~--------------------~~~a 270 (583)
..++..+...|...|++++|...+.+.......... ....++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 334555666666666666666666655443100000 012355556666666666 6666
Q ss_pred HHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 007970 271 RQVLAEMTRI----GV-PANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 271 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a 341 (583)
...++...+. +. +....++..+...|...|++++|...+++..+.....++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 6666655432 11 112345667777788888888888888777543211222 23677777888888888888
Q ss_pred HHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 007970 342 LTFFNEMRARGI-APT----KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 342 ~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A 412 (583)
...+++...... .++ ..++..+...+...|++++|...++...+......+ ..++..+..+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888887754311 011 456777888888999999999998887652111111 55778888999999999999
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHh
Q 007970 413 KRIIERMKEN----GFYP-NVATYGSLANGISLARKPG 445 (583)
Q Consensus 413 ~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~ 445 (583)
.+.+++..+. +..+ ...++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9999987642 2111 2345566666666666553
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-13 Score=131.63 Aligned_cols=281 Identities=16% Similarity=0.100 Sum_probs=176.4
Q ss_pred HHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCH----HHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 007970 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDT----AAYNAVLNACANLGKPKKFLQLFDQMHE 86 (583)
Q Consensus 11 ~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 86 (583)
..+..+...+...|+ +++|+..|+++.+. .+.+. .++..+...|...|++++|+..|++..+
T Consensus 49 ~~l~~~g~~~~~~g~--~~~A~~~~~~al~~------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 49 LELALEGERLCNAGD--CRAGVAFFQAAIQA------------GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114 (411)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc--HHHHHHHHHHHHHh------------cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345556667777777 88888888888874 12232 4777888888888888888888888765
Q ss_pred C----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC-----CCcchhHHHHHHHHHHcCCC-------------
Q 007970 87 F----GA-KPDVLTYNVMIKLCARASRKHLLVFVLERILEMG-----ITLCMTTFQSLVAAYVGFGD------------- 143 (583)
Q Consensus 87 ~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~------------- 143 (583)
. +. .....++..+...+...|++++|...+++..+.. .+....++..+..+|...|+
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 194 (411)
T 4a1s_A 115 LAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDD 194 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHH
T ss_pred HHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhh
Confidence 3 11 1234567777788888888888888888776541 12234567777888888888
Q ss_pred ----hHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 144 ----LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 144 ----~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
+++|...+++....... .. ..+....++..+
T Consensus 195 a~~~~~~A~~~~~~al~~~~~------------------------------~~---------------~~~~~~~~~~~l 229 (411)
T 4a1s_A 195 VKEALTRAVEFYQENLKLMRD------------------------------LG---------------DRGAQGRACGNL 229 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------------------------HT---------------CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH------------------------------cC---------------CHHHHHHHHHHH
Confidence 67777766655442111 00 001224577888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-----CCHHHHHHH
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHP--DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP-----ANRITYNIL 292 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l 292 (583)
...|...|++++|++.+++..........+ ....+..+...+...|++++|...++...+.... ....++..+
T Consensus 230 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 230 GNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999998877642100000 1225667777777888888888887776643100 113455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
..+|...|++++|...+++.+.......+ ..++..+...|...|++++|...|++..+
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66777777777777777666432110111 23455555555666666666666655544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.9e-13 Score=125.36 Aligned_cols=285 Identities=13% Similarity=0.023 Sum_probs=151.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhCCCcc----hhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 007970 96 YNVMIKLCARASRKHLLVFVLERILEMGITLC----MTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLE 171 (583)
Q Consensus 96 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 171 (583)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++..........
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------- 77 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--------- 77 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---------
Confidence 4444556667777777777777777664 222 34566777777778888888877776654211100
Q ss_pred cccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCC--
Q 007970 172 DYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP-- 249 (583)
Q Consensus 172 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-- 249 (583)
..+....++..+...+...|++++|.+.+.+..........+
T Consensus 78 ------------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 121 (338)
T 3ro2_A 78 ------------------------------------DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 121 (338)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------------------------------------ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH
Confidence 001224566777788888888888888887766542100000
Q ss_pred CHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHH
Q 007970 250 DHVTYTTVVSALVKAGS--------------------MDRARQVLAEMTRI----GV-PANRITYNILLKGYCQQLQIDK 304 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~ 304 (583)
...++..+...+...|+ +++|...++..... +. +....++..+...+...|++++
T Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 201 (338)
T 3ro2_A 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRD 201 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHH
Confidence 12356666677777777 66666666554421 10 0112244445555555555555
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007970 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384 (583)
Q Consensus 305 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 384 (583)
|...+++..+.....++.. ....++..+...+...|++++|...+++..
T Consensus 202 A~~~~~~a~~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 202 AVIAHEQRLLIAKEFGDKA-------------------------------AERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChH-------------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555432100001100 001234444445555555555555555443
Q ss_pred cCC---CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 007970 385 RDP---RVK-VDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GFYP-NVATYGSLANGISLARKPGEALLLWKEIK 455 (583)
Q Consensus 385 ~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 455 (583)
+.. +.+ ....++..+...|...|++++|...+++..+. +..+ ...++..+...|...|++++|...++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 210 000 01345555666666666666666666665432 1000 12355566666667777777777777666
Q ss_pred HH
Q 007970 456 ER 457 (583)
Q Consensus 456 ~~ 457 (583)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 54
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-10 Score=116.20 Aligned_cols=430 Identities=9% Similarity=0.023 Sum_probs=289.1
Q ss_pred CCchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCC---cchHHHHHHH
Q 007970 7 LPHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGK---PKKFLQLFDQ 83 (583)
Q Consensus 7 ~p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~ 83 (583)
+-|..+|..+|..+.+.+. ++.+..+|+.++.. .|.+...|..-+..-.+.++ ++.+..+|+.
T Consensus 63 p~d~~~W~~yi~~~~~~~~--~~~aR~vyEraL~~------------fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQ--WKQVYETFDKLHDR------------FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHH------------CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 3478899999999998887 99999999999986 67788999999999999999 9999999999
Q ss_pred HHHCC-CCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHH-hCC-Cc-chhHHHHHHHHHHc---------CC
Q 007970 84 MHEFG-AKPDVLTYNVMIKLCARASRK--------HLLVFVLERILE-MGI-TL-CMTTFQSLVAAYVG---------FG 142 (583)
Q Consensus 84 m~~~~-~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~g 142 (583)
..... ..|++..|...+....+.++. +.+.++|+..+. .|. .+ +...|...+..... .+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 98854 137888898888776665553 334477877664 355 34 45677777765443 23
Q ss_pred ChHHHHHHHHHHHhhhH-HHH-------HHHHhhhhcc---ccccCCCCCCCcHHHHHhhcC--CCCC---CCCCCCCCC
Q 007970 143 DLEIAETIVQAMREGRR-DVC-------KIIRELDLED---YSSENEGDDDDDDEVFEKLLP--NSIN---PSSEPPLLP 206 (583)
Q Consensus 143 ~~~~A~~~~~~~~~~~~-~~~-------~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~~~~~~~ 206 (583)
+++.+..+|+....... ... .+........ ........++.|...+..+.. ..+. +....+...
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~ 288 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCT
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchh
Confidence 46778888887765311 011 1111100000 000000111222333332110 0110 000000011
Q ss_pred CCCCC-------CHHHHHHHHHHHHhcC-------ChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHH-
Q 007970 207 KTFAP-------NSRIYTTLMKGYMNEG-------RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRAR- 271 (583)
Q Consensus 207 ~~~~~-------~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~- 271 (583)
..+++ ....|...+..--..+ ..+.+..+|+++... .+-....|...+..+...|+.+.|.
T Consensus 289 ~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~----~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH----VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 11111 1356777766544332 123456778888875 5667889999999899999999997
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCCC------------HHHHHHHHHH
Q 007970 272 QVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDA--------KIEPD------------VVSYNILIDG 331 (583)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~------------~~~~~~li~~ 331 (583)
++|+..... +|.+...+..++...-+.|+++.|..+|+.++... ...|+ ...|...+..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999999874 46677778888999999999999999999987531 00131 2367777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 007970 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS-SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (583)
..+.|..+.|..+|..+.+....+....|...+..-.+. ++.+.|..+|+..++. .+.+...|...+......|+.+
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHH
Confidence 778899999999999998861122334444433333344 4589999999999884 5567778889999888999999
Q ss_pred HHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 411 EAKRIIERMKENGFYP--NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.|..+|++.......+ ....|...+..=...|+.+.+.++.+++.+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999998763211 2356777777778899999999999999987
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-11 Score=111.06 Aligned_cols=236 Identities=11% Similarity=0.035 Sum_probs=188.6
Q ss_pred CHHHHHHHHHHHHhc----CCh----hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH-------cCCh-------HH
Q 007970 212 NSRIYTTLMKGYMNE----GRV----SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK-------AGSM-------DR 269 (583)
Q Consensus 212 ~~~~~~~li~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~ 269 (583)
+...|...+..-.+. ++. ++|..+|+++... .+.+...|..++..+.. .|++ ++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 82 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 82 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHH
Confidence 345677777665443 233 6888999999885 45567888888877753 5886 89
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 270 ARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VV-SYNILIDGFILIDDSAGALTFFNE 347 (583)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~ 347 (583)
|..+|+..++.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ .. .|..+...+.+.|++++|..+|++
T Consensus 83 A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 83 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999998422456778999999999999999999999999863 343 33 899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CC
Q 007970 348 MRARGIAPTKISYTTLMKAFA-LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG-FY 425 (583)
Q Consensus 348 m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~ 425 (583)
..+.. +++...|........ ..|++++|..+|+...+. .+.+...|..++..+.+.|++++|..+|++..... +.
T Consensus 160 a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 99864 344555554443322 369999999999999873 45578899999999999999999999999999863 35
Q ss_pred C--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 426 P--NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 426 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
| ....|..++......|+.++|..+++++.+.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 4678888899999999999999999999987
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-11 Score=105.93 Aligned_cols=165 Identities=12% Similarity=0.037 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007970 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400 (583)
Q Consensus 321 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 400 (583)
+...|..+...|...|++++|+..|++..+.. +-+...+..+..++.+.|++++|...+..... ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 34455556666666666666666666655542 23455566666666666666666666666654 2334455566666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-H
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-E 479 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~ 479 (583)
..+...++++.|.+.+.+..+. .+.+...+..+..++...|++++|++.|+++.+. .|+ .
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~ 141 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI------------------KPGFI 141 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh------------------cchhh
Confidence 6666666666666666666654 2334556666666666777777777777766655 333 4
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.++..+..+|.+.|++++|++.+++..+
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666777777777777777776654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-11 Score=120.06 Aligned_cols=232 Identities=11% Similarity=0.021 Sum_probs=176.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-----HHHHH
Q 007970 257 VVSALVKAGSMDRARQVLAEMTRI----GVPA-NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-----VVSYN 326 (583)
Q Consensus 257 ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~ 326 (583)
....+...|++++|...++...+. +.++ ...++..+..+|...|+++.|...+.+..+.....++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778899999999999999864 2111 3467888999999999999999999988653222222 35788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCC-CCCHHHHH
Q 007970 327 ILIDGFILIDDSAGALTFFNEMRARGI-APT----KISYTTLMKAFALSSQPKLANKVFDEMLRD---PRV-KVDIVAWN 397 (583)
Q Consensus 327 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~ 397 (583)
.+...|...|++++|+..|++...... .++ ..++..+...|...|++++|...|++..+. .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999998765311 112 246788889999999999999999988761 122 34467889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHHhhhhhccccCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKEN----GFYPNVATYGSLANGISLARK---PGEALLLWKEIKERCEVKKEGVNADSD 470 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (583)
.+..+|.+.|++++|.+.+++..+. +-+.....+..+...+...|+ +++|+.++++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--------------- 333 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--------------- 333 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---------------
Confidence 9999999999999999999988753 111122335667777888898 777777776652
Q ss_pred CCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 471 LPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 471 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..|+ ...+..+..+|...|++++|...+++..+
T Consensus 334 ----~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 334 ----LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1333 36778899999999999999999999864
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-10 Score=109.81 Aligned_cols=237 Identities=8% Similarity=0.068 Sum_probs=146.3
Q ss_pred chHHHHHHHHHHHhcCC--CCh----hhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHh-------cCCc-
Q 007970 9 HVKAWSTVVSRLAASGD--DGP----VESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACAN-------LGKP- 74 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~--~~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~- 74 (583)
+...|...+..-.+... ++. .+|+..|++++.. .|.++..|..++..+.. .|++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~------------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~ 74 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV------------LGHHPDIWYEAAQYLEQSSKLLAEKGDMN 74 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH------------HTTCHHHHHHHHHHHHHHHHHHHHTSCCH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH------------cCCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 34578888876554311 112 6788899999885 46678899988888764 4775
Q ss_pred ------chHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchh-HHHHHHHHHHcCCChHH
Q 007970 75 ------KKFLQLFDQMHE-FGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMT-TFQSLVAAYVGFGDLEI 146 (583)
Q Consensus 75 ------~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~ 146 (583)
++|..+|+...+ ... -+...|..++..+.+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++
T Consensus 75 ~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~ 152 (308)
T 2ond_A 75 NAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKS 152 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHH
T ss_pred hcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHH
Confidence 777777777776 232 245567777777777777777777777777642 22233 66667777777777777
Q ss_pred HHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-h
Q 007970 147 AETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYM-N 225 (583)
Q Consensus 147 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~ 225 (583)
|..+|+...... +.+...|...+.... .
T Consensus 153 A~~~~~~a~~~~---------------------------------------------------p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 153 GRMIFKKAREDA---------------------------------------------------RTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHHTST---------------------------------------------------TCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC---------------------------------------------------CCCHHHHHHHHHHHHHH
Confidence 777776665421 122333333322221 2
Q ss_pred cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG-VPA--NRITYNILLKGYCQQLQI 302 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~ 302 (583)
.|++++|.++|+...+. .+.+...|..++..+.+.|++++|..+|+...... ++| ....|..++..+.+.|+.
T Consensus 182 ~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp SCCHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred cCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 46666676666666654 23345566666666666666666666666666642 232 344556666666666666
Q ss_pred HHHHHHHHHHHh
Q 007970 303 DKAKELLREMAD 314 (583)
Q Consensus 303 ~~A~~~~~~~~~ 314 (583)
+.|..+++++.+
T Consensus 258 ~~a~~~~~~a~~ 269 (308)
T 2ond_A 258 ASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.3e-13 Score=124.49 Aligned_cols=250 Identities=14% Similarity=0.097 Sum_probs=132.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-----
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN----ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI----- 280 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----- 280 (583)
+.+..++..+...+...|++++|..+++++.+.... ........+..+...+...|++++|...++.+.+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334566777777777888888888887777663100 01222445566666666667777776666665542
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 007970 281 -G-VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP-TK 357 (583)
Q Consensus 281 -~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~ 357 (583)
+ .+....++..+...|...|++++|...++++.+... ... .+..| ..
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-----------------------------~~~-~~~~~~~~ 153 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE-----------------------------KVL-GKDHPDVA 153 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-----------------------------HHH-CTTCHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-----------------------------Hhc-CCCChHHH
Confidence 1 111233444455555555555555555554433100 000 01111 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CC
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRD------PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-------GF 424 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g~ 424 (583)
..+..+...+...|++++|..+|+++.+. ...+....++..+..+|...|++++|.++++++.+. ..
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455555566666666666666655441 011223445667777777777777777777777642 11
Q ss_pred CCCH-------HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHH
Q 007970 425 YPNV-------ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFR 496 (583)
Q Consensus 425 ~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 496 (583)
.+.. ..+..+...+...+.+.++...++..... .|+. .++..+..+|.+.|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------------------~~~~~~~~~~la~~~~~~g~~~ 295 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD------------------SPTVTTTLKNLGALYRRQGKFE 295 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------------------------CHHHHHHHHHHHHHHHHHTCHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC------------------CchHHHHHHHHHHHHHHCCCHH
Confidence 1111 12222233344556666677777766643 4444 78888999999999999
Q ss_pred HHHHHHHHHHH
Q 007970 497 KALEIVACMEE 507 (583)
Q Consensus 497 ~A~~~~~~~~~ 507 (583)
+|.+++++..+
T Consensus 296 ~A~~~~~~al~ 306 (311)
T 3nf1_A 296 AAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-11 Score=103.92 Aligned_cols=167 Identities=15% Similarity=0.071 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007970 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLM 364 (583)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 364 (583)
++.+|..+...|...|++++|+..|++.++.. +.+..++..+..+|...|++++|+..+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 45566667777777777777777777766542 3355666667777777777777777777766652 33455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444 (583)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 444 (583)
..+...++++.|...+.+..+ ..+.+...+..+..+|.+.|++++|++.|++..+.. +.+..++..+..+|...|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 667777777777777777665 334556677777777777777777777777777652 33566777777777777778
Q ss_pred hHHHHHHHHHHHH
Q 007970 445 GEALLLWKEIKER 457 (583)
Q Consensus 445 ~~a~~~~~~~~~~ 457 (583)
++|++.|+++++.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 7887777777754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=8e-12 Score=124.80 Aligned_cols=213 Identities=15% Similarity=0.077 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007970 267 MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQI-DKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFF 345 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 345 (583)
++++...++...... +.+...+..+..+|...|++ ++|+..|++.++.. +.+...|..+..+|...|++++|+..|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455666666555432 34667777777777788888 88888887776642 334677777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc--------CC
Q 007970 346 NEMRARGIAPTKISYTTLMKAFALS---------SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM--------GL 408 (583)
Q Consensus 346 ~~m~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~ 408 (583)
++..+. .|+...+..+...+... |++++|...|++..+ ..+.+...|..+..+|... |+
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 887775 46667777777778777 888899999988877 3455678888888888888 89
Q ss_pred HHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHH
Q 007970 409 VEEAKRIIERMKENGFY---PNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDA 484 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~ 484 (583)
+++|++.|++..+.. + -+...+..+..+|...|++++|++.|+++.+. .|+ ...+..
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------------------~p~~~~a~~~ 297 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL------------------DPAWPEPQQR 297 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHH
Confidence 999999999998752 2 37888999999999999999999999999886 555 477888
Q ss_pred HHHHHHhhhhHHHHHHHHHHH
Q 007970 485 LADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 485 l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+..++...|++++|++.+.++
T Consensus 298 l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 298 EQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 889999999999998866543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-11 Score=121.04 Aligned_cols=213 Identities=11% Similarity=0.062 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 301 QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDS-AGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379 (583)
Q Consensus 301 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 379 (583)
.++++...++..... .+.+...+..+...+...|++ ++|+..|++..+.. +.+...+..+..+|...|++++|...
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 356777777776532 245788899999999999999 99999999998863 44688999999999999999999999
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 007970 380 FDEMLRDPRVKVDIVAWNMLVEGYCRM---------GLVEEAKRIIERMKENGFYPNVATYGSLANGISLA--------R 442 (583)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--------g 442 (583)
|++..+. .|+...+..+..+|... |++++|++.|++..+.. +.+...|..+..+|... |
T Consensus 160 ~~~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 9999873 47788999999999999 99999999999999863 44688899999999988 9
Q ss_pred CHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC----CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH-H
Q 007970 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP----DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK-Y 517 (583)
Q Consensus 443 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~ 517 (583)
++++|+..|+++.+. .| +...+..+..+|...|++++|.+.+++..+ +.|+... +
T Consensus 236 ~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~ 295 (474)
T 4abn_A 236 ISQQALSAYAQAEKV------------------DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHHHHHH------------------CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred hHHHHHHHHHHHHHh------------------CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 999999999999986 55 568999999999999999999999999986 3455443 3
Q ss_pred HHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 518 KKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 518 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
..+ ..++... |++++|++.+.++
T Consensus 296 ~~l-~~~~~~l-----------------g~~~eAi~~~~~~ 318 (474)
T 4abn_A 296 QRE-QQLLEFL-----------------SRLTSLLESKGKT 318 (474)
T ss_dssp HHH-HHHHHHH-----------------HHHHHHHHHTTTC
T ss_pred HHH-HHHHHHH-----------------HHHHHHHHHhccc
Confidence 333 5555555 8888888655444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-11 Score=116.06 Aligned_cols=239 Identities=7% Similarity=-0.050 Sum_probs=177.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--C----CCCHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNA-SHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIG--V----PANRIT 288 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~~ 288 (583)
......+...|++++|++.|++........ ..+ ...++..+...+...|+++.|...+.+..+.- . +....+
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 346677888999999999999987642110 111 24678888899999999999999999887531 1 112457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHH
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGALTFFNEMRAR----GI-APTKIS 359 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~~~ 359 (583)
++.+..+|...|++++|...|++.++.....++ ..++..+..+|...|++++|+..+++.... +. +....+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 788889999999999999999888653211222 247888899999999999999999998762 23 334667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDP---RVKVDIVAWNMLVEGYCRMGL---VEEAKRIIERMKENGFYPN-VATYG 432 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~ 432 (583)
+..+...+...|++++|...+++..+.. +.+.....+..+...+...|+ +++|+.++++. +..|+ ...+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 343 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 8888999999999999999999876521 112223345677888888898 77777777765 23333 34677
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 433 SLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.+...|...|++++|...++++.+..
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 78889999999999999999998764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.9e-09 Score=107.58 Aligned_cols=381 Identities=10% Similarity=0.044 Sum_probs=240.0
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHhC-CCcchh
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR---KHLLVFVLERILEMG-ITLCMT 129 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~ 129 (583)
.|-|..+|..++..+.+.+.++.+..+|+.+...- ..+...|...+..-.+.++ ++.+..+|++.+... .+|++.
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 46689999999999999999999999999998763 3466778888888788888 999999999988764 137888
Q ss_pred HHHHHHHHHHcCCCh----HHHH----HHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCC
Q 007970 130 TFQSLVAAYVGFGDL----EIAE----TIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSE 201 (583)
Q Consensus 130 ~~~~l~~~~~~~g~~----~~A~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 201 (583)
.|..-+....+.++. +++. ++|+.....
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~-------------------------------------------- 176 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK-------------------------------------------- 176 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--------------------------------------------
Confidence 888777665555543 2333 333333220
Q ss_pred CCCCCCCC--CCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH-------
Q 007970 202 PPLLPKTF--APNSRIYTTLMKGYM---------NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK------- 263 (583)
Q Consensus 202 ~~~~~~~~--~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~------- 263 (583)
-|. ..+...|...+.... ..++++.+.++|..+... +...-..+|......-..
T Consensus 177 -----vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i---P~~~~~~~w~~Y~~fe~~~~~~~a~ 248 (679)
T 4e6h_A 177 -----CAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ---PMDCLESMWQRYTQWEQDVNQLTAR 248 (679)
T ss_dssp -----TTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS---CCSSHHHHHHHHHHHHHHHCTTTHH
T ss_pred -----hCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHhcCcchHH
Confidence 011 234556776666543 234567788888888753 111112233211111101
Q ss_pred ------cCChHHHHHHHHHHHh--CCC----CCC-------------------HHHHHHHHHHHHhcC-------CHHHH
Q 007970 264 ------AGSMDRARQVLAEMTR--IGV----PAN-------------------RITYNILLKGYCQQL-------QIDKA 305 (583)
Q Consensus 264 ------~g~~~~a~~~~~~~~~--~~~----~~~-------------------~~~~~~l~~~~~~~~-------~~~~A 305 (583)
..+++.|...+.++.. .++ +.. ...|...+..--..+ ..+.+
T Consensus 249 ~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv 328 (679)
T 4e6h_A 249 RHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARM 328 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHH
Confidence 1223444555544321 111 110 134444444332222 12345
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 007970 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGAL-TFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEML 384 (583)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 384 (583)
..+|++.+... +-....|-..+..+...|+.++|. .+|+..... ++.+...+...+......|+++.|.++|+++.
T Consensus 329 ~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 329 TYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56787777643 446677877777777888888886 999888874 45566667777888888899999999998887
Q ss_pred cCC---------CCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-C
Q 007970 385 RDP---------RVKV-----------DIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFYPNVATYGSLANGISLA-R 442 (583)
Q Consensus 385 ~~~---------~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~-g 442 (583)
... ..+. ....|...+....+.|..+.|..+|.++.+. +. +....|...+..-.+. +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCC
Confidence 520 0111 1346777888888888999999999998875 21 1223333333222333 4
Q ss_pred CHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 443 KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 443 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
+.+.|.++|+.+.+.+ +-+...+...+......|+.+.|..+|+.....
T Consensus 485 d~e~Ar~ife~~Lk~~-----------------p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF-----------------ATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp CCHHHHHHHHHHHHHH-----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHC-----------------CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5889999999998873 334566677778788889999999999988753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-12 Score=119.44 Aligned_cols=140 Identities=14% Similarity=0.096 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------C
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN----ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI------G 281 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 281 (583)
...++..+..+|...|++++|.+.+++....... .......++..+...+...|++++|...++.+.+. +
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 3567888999999999999999999999875100 11233567888999999999999999999998864 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 007970 282 V-PANRITYNILLKGYCQQLQIDKAKELLREMADD------AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR 351 (583)
Q Consensus 282 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 351 (583)
. +.....+..+...|...|++++|..+++++.+. ...+....++..+...|...|++++|...++++...
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 223455677778888888888888888877653 111122345666666777777777777777776653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-09 Score=106.14 Aligned_cols=238 Identities=11% Similarity=-0.008 Sum_probs=174.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC--C---C-CCHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASH--PDHVTYTTVVSALVKAGSMDRARQVLAEMTRIG--V---P-ANRI 287 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~---~-~~~~ 287 (583)
+......+...|++++|+..|.+.......... ....++..+...+...|+++.|...+++..+.. . . ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 344556678899999999999998765211010 124577888889999999999999998877531 1 1 1245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 007970 288 TYNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGALTFFNEMRA-----RGIAPTKI 358 (583)
Q Consensus 288 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~ 358 (583)
+++.+..+|...|++++|...|++.++.....++ ..++..+..+|...|++++|+..+++... .. +....
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHH
Confidence 6778889999999999999999887653211122 34678888899999999999999999876 32 33367
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPR---VKVDIVAWNMLVEGYCRMGL---VEEAKRIIERMKENGFYPN-VATY 431 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~ 431 (583)
++..+...+.+.|++++|...+++..+... .+.....+..+...+...++ +.+|+.++++. +..|+ ...+
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 339 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence 788888999999999999999999876321 22224456666677777788 77777777662 22333 3456
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 432 GSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+...|...|++++|...|+++.+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67888899999999999999998765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-10 Score=109.60 Aligned_cols=234 Identities=12% Similarity=0.006 Sum_probs=174.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----CHHH
Q 007970 255 TTVVSALVKAGSMDRARQVLAEMTRIGV-PA----NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP-----DVVS 324 (583)
Q Consensus 255 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~ 324 (583)
......+...|++++|...++++.+.-. .+ ...++..+..+|...|+++.|...+.+..+.....+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567789999999999999886421 12 245778889999999999999999988765322122 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCCHHHH
Q 007970 325 YNILIDGFILIDDSAGALTFFNEMRAR----GIAP-TKISYTTLMKAFALSSQPKLANKVFDEMLRD---PRVKVDIVAW 396 (583)
Q Consensus 325 ~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 396 (583)
+..+...|...|++++|+..|++.... +..+ ...++..+..++...|++++|...|++..+. .+.+....++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 888899999999999999999987653 1111 1346778888999999999999999998761 0123336788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHHhhhhhccccCCC
Q 007970 397 NMLVEGYCRMGLVEEAKRIIERMKENG----FYPNVATYGSLANGISLARK---PGEALLLWKEIKERCEVKKEGVNADS 469 (583)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~g----~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~ 469 (583)
..+..+|.+.|++++|...+++..+.. .+.....+..+...+...++ +.+|+..+++..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-------------- 330 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-------------- 330 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--------------
Confidence 899999999999999999999988632 11123455666666777888 777777776531
Q ss_pred CCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 470 DLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 470 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..|+ ...+..+...|...|++++|...+++..+
T Consensus 331 -----~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 331 -----LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2333 35677889999999999999999999854
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-09 Score=103.97 Aligned_cols=213 Identities=9% Similarity=0.025 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccC-CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC----CH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN-ASH--P-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA----NR 286 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~ 286 (583)
++..+...+...|++++|.+.+++....... +.. | ....+..+...+...|++++|...+++........ ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3556667777778888887777776553110 011 2 12344445556666666666666666655432110 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
.++..+...+...|++++|...+++.............+... .....+..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 224 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN------------------------------ANKVRVIY 224 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH------------------------------HHHHHHHH
Confidence 334444555555555555555555443211000000000000 00011222
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVK--VDIVAWNMLVEGYCRMGLVEEAKRIIERMKE----NGFYPNV-ATYGSLANGIS 439 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~p~~-~~~~~l~~~~~ 439 (583)
+...|++++|...+.......... .....+..+...+...|++++|.+.+++... .|..++. ..+..+..++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 344555555555555544311000 0122345556666666777777666666542 2211222 24555566677
Q ss_pred hcCCHhHHHHHHHHHHHH
Q 007970 440 LARKPGEALLLWKEIKER 457 (583)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~ 457 (583)
..|++++|...+++....
T Consensus 305 ~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHH
Confidence 777777777777777665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=9.2e-10 Score=106.59 Aligned_cols=278 Identities=11% Similarity=-0.027 Sum_probs=196.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCC----
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDH----VTYTTVVSALVKAGSMDRARQVLAEMTRIGV-PAN---- 285 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~---- 285 (583)
........+...|++++|...+++..... ...+. ..+..+...+...|++++|...+++...... ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEEL---PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC---CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34455667788999999999999988752 11222 2456667788899999999999998775311 112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----
Q 007970 286 RITYNILLKGYCQQLQIDKAKELLREMADDA---KIE--P-DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP---- 355 (583)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---- 355 (583)
..++..+...+...|++++|...+++.+... +.. | ....+..+...+...|++++|...+++........
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 2335677888999999999999998876532 211 2 23456677888999999999999999987643221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---C
Q 007970 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD-IVAWN----MLVEGYCRMGLVEEAKRIIERMKENGFYP---N 427 (583)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~g~~p---~ 427 (583)
...++..+...+...|++++|...++........... ..... ..+..+...|++++|..++++.......+ .
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 2346777888899999999999999987642111111 11111 23345779999999999999887542211 1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
...+..+...+...|++++|...++++....... +..++. .++..+..++...|++++|...+++..
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSL------------RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------------cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3356677888999999999999999987753210 111222 366777889999999999999999885
Q ss_pred H
Q 007970 507 E 507 (583)
Q Consensus 507 ~ 507 (583)
.
T Consensus 321 ~ 321 (373)
T 1hz4_A 321 K 321 (373)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=6e-10 Score=99.51 Aligned_cols=205 Identities=13% Similarity=0.033 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTL 363 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 363 (583)
.++..+......+...|++++|...|++.++... .++...+..+..++...|++++|+..|++..... +.+...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 3456666677777777777777777777765321 1555666667777777777777777777777652 2245566667
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHH
Q 007970 364 MKAFALSSQPKLANKVFDEMLRDPRVKVDI-------VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVA---TYGS 433 (583)
Q Consensus 364 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~ 433 (583)
..++...|++++|...|++..+. .+.+. ..|..+...+...|++++|++.|+++.+. .|+.. .+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 77777777777777777777652 23334 44666666677777777777777777642 44322 2333
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCC
Q 007970 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPN 513 (583)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 513 (583)
+..+|... +..+++++.... ..+...+... .....+.+++|+..+++..+ +.|+
T Consensus 159 l~~~~~~~-----~~~~~~~a~~~~-----------------~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~--l~p~ 212 (228)
T 4i17_A 159 LGVLFYNN-----GADVLRKATPLA-----------------SSNKEKYASE--KAKADAAFKKAVDYLGEAVT--LSPN 212 (228)
T ss_dssp HHHHHHHH-----HHHHHHHHGGGT-----------------TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHH-----HHHHHHHHHhcc-----------------cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh--cCCC
Confidence 33333322 223333333221 2222333222 23345667999999999986 4566
Q ss_pred HHHHHHH
Q 007970 514 KTKYKKI 520 (583)
Q Consensus 514 ~~~~~~~ 520 (583)
......+
T Consensus 213 ~~~~~~~ 219 (228)
T 4i17_A 213 RTEIKQM 219 (228)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 6544433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=4.3e-10 Score=96.57 Aligned_cols=162 Identities=13% Similarity=0.015 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007970 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404 (583)
Q Consensus 325 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (583)
+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3333444444444444444444443321 223444444455555555555555555554441 2334455555555555
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDA 484 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 484 (583)
..|++++|.++++++.+. .+.+...+..+...+...|++++|+..++++.+.. +.+..++..
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~~ 149 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-----------------PNEGKVHRA 149 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------TTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----------------ccchHHHHH
Confidence 556666666665555543 23344555555555666666666666666655541 223355555
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Q 007970 485 LADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 485 l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
++.++...|++++|.+.+++..+
T Consensus 150 la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 150 IAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666666666543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5.5e-10 Score=95.87 Aligned_cols=165 Identities=14% Similarity=0.007 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA 366 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 366 (583)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34455566666677777777777666432 23455666666777777777777777777766652 3456667777777
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 007970 367 FALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446 (583)
Q Consensus 367 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 446 (583)
+...|++++|...++++.+ ..+.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 7777888888888877766 234566777778888888888888888888877652 4456777788888888888888
Q ss_pred HHHHHHHHHHH
Q 007970 447 ALLLWKEIKER 457 (583)
Q Consensus 447 a~~~~~~~~~~ 457 (583)
|...++++.+.
T Consensus 163 A~~~~~~~~~~ 173 (186)
T 3as5_A 163 ALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888887765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-10 Score=117.28 Aligned_cols=164 Identities=14% Similarity=0.000 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 007970 322 VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVE 401 (583)
Q Consensus 322 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 401 (583)
..+|+.+...|.+.|++++|+..|++..+.. +-+...+..+..++.+.|++++|+..|++..+ -.+.+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 4566667777777777777777777766652 23466667777777777777777777777765 23445667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-H
Q 007970 402 GYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-E 480 (583)
Q Consensus 402 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~ 480 (583)
+|.+.|++++|++.|++.++.. +-+...+..+..+|...|++++|++.|+++.+. .|+. .
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l------------------~P~~~~ 146 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL------------------KPDFPD 146 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CSCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCChH
Confidence 7777777777777777777642 234667777777777777777777777777765 5553 6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 481 LLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 481 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+..+..+|...|++++|.+.+++..+
T Consensus 147 a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 147 AYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 777777777777777777777777643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-09 Score=96.04 Aligned_cols=202 Identities=10% Similarity=0.033 Sum_probs=154.4
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHH
Q 007970 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLV 135 (583)
Q Consensus 56 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 135 (583)
.|+..+......+...|++++|+..|+...+....++...+..+..++...|++++|+..+++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46688999999999999999999999999987654677777779999999999999999999999875 55778899999
Q ss_pred HHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHH
Q 007970 136 AAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215 (583)
Q Consensus 136 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (583)
.+|...|++++|...++......|+....... -..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------------------------------------------~~~~ 119 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKL--------------------------------------------YAIY 119 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH--------------------------------------------HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH--------------------------------------------HHHH
Confidence 99999999999999999988743221110000 0146
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD---HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
|..+...+...|++++|++.|++..+. .|+ ...+..+..++...| ..+++.+...+ ..+...+...
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~ 188 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDV-----TSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASE 188 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTS-----SCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhc-----CCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH
Confidence 888889999999999999999999874 444 566777777775443 44455555544 2334444433
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 007970 293 LKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
. ....+.+++|+..|++..+.
T Consensus 189 ~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 189 K--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHhhc
Confidence 3 33456789999999999775
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-10 Score=115.43 Aligned_cols=169 Identities=7% Similarity=0.054 Sum_probs=149.0
Q ss_pred CCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHH
Q 007970 54 SKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQS 133 (583)
Q Consensus 54 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 133 (583)
.|-++.+++.|..++.+.|++++|++.|++..+... -+..+|..+..+|.+.|++++|+..|++.++.. +-+...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 345688999999999999999999999999998653 257889999999999999999999999999986 567889999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCH
Q 007970 134 LVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNS 213 (583)
Q Consensus 134 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (583)
+..+|.+.|++++|++.|++..+.. +.+.
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~---------------------------------------------------P~~~ 111 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN---------------------------------------------------PAFA 111 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------------------------TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---------------------------------------------------CCCH
Confidence 9999999999999999999887632 3567
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR 279 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 279 (583)
.+|+.+..+|.+.|++++|++.|++..+. .+-+...+..+..++...|++++|.+.++++.+
T Consensus 112 ~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l----~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 112 DAHSNLASIHKDSGNIPEAIASYRTALKL----KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 89999999999999999999999999985 344578899999999999999999988888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-10 Score=105.89 Aligned_cols=231 Identities=13% Similarity=-0.001 Sum_probs=156.0
Q ss_pred hcCChhHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------CC-CCCHHHHHHHH
Q 007970 225 NEGRVSDTVRMLGAMRRQEDN----ASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI------GV-PANRITYNILL 293 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 293 (583)
..|++++|+..|++....... ..+....++..+...+...|++++|...++.+.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 457777777777766553110 11224567888999999999999999999998864 21 23456788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcC-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHH
Q 007970 294 KGYCQQLQIDKAKELLREMADDA-----K-IEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR------GIAP-TKISY 360 (583)
Q Consensus 294 ~~~~~~~~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~ 360 (583)
.+|...|++++|...+.+++... . .+....++..+...|...|++++|...++++... +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999987641 1 1234567888889999999999999999998764 1122 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHCCCCCC
Q 007970 361 TTLMKAFALSSQPKLANKVFDEMLRDP-------RVKVDIVAWNMLVEGYCRMGL------VEEAKRIIERMKENGFYPN 427 (583)
Q Consensus 361 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~g~~p~ 427 (583)
..+...+...|++++|..+++++.+.. ........|..+...+...+. +..+...+...... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 888889999999999999999987520 011122233333333333332 22222222222111 1123
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
..++..+...|...|++++|..+++++.+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888899999999999999998875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=7.5e-10 Score=102.97 Aligned_cols=235 Identities=12% Similarity=0.015 Sum_probs=162.8
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc--C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007970 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA--G-SMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAK 306 (583)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 306 (583)
.+|.+++.+..+. .+++...| .+ .+. + ++++|...|... ...|...|++++|.
T Consensus 2 ~~a~~~~~~a~k~----~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 57 (292)
T 1qqe_A 2 SDPVELLKRAEKK----GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAG 57 (292)
T ss_dssp CCHHHHHHHHHHH----SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHH
T ss_pred CcHHHHHHHHHHH----hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567777777775 33322222 22 232 2 488888888776 34577889999999
Q ss_pred HHHHHHHhcC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhc-CCHHHH
Q 007970 307 ELLREMADDA---KIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGIA-PT----KISYTTLMKAFALS-SQPKLA 376 (583)
Q Consensus 307 ~~~~~~~~~~---~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~-~~~~~a 376 (583)
..|.+..... +..++ ..+|+.+..+|...|++++|+..|++....... .+ ..++..+...|... |++++|
T Consensus 58 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A 137 (292)
T 1qqe_A 58 DSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKA 137 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 9888775531 21111 467888899999999999999999887653111 11 35678888889986 999999
Q ss_pred HHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHhH
Q 007970 377 NKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV------ATYGSLANGISLARKPGE 446 (583)
Q Consensus 377 ~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~ 446 (583)
...|++..+......+ ..++..+...+.+.|++++|+..|++..+....... ..+..+..++...|++++
T Consensus 138 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 217 (292)
T 1qqe_A 138 IDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA 217 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999998762100011 356888999999999999999999999975322211 256777888999999999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH------HHHHHHHHHHH--hhhhHHHHHHHHHHHH
Q 007970 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE------ELLDALADICV--RAAFFRKALEIVACME 506 (583)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 506 (583)
|+..|++..+. .|+. ..+..++.+|. ..+++++|++.++.+.
T Consensus 218 A~~~~~~al~l------------------~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 218 AARTLQEGQSE------------------DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHGGGCC---------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhh------------------CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 99999998753 4432 23455566664 4577889888887764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=4.9e-09 Score=97.44 Aligned_cols=182 Identities=9% Similarity=-0.044 Sum_probs=129.8
Q ss_pred CcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh----CCCcc-hhHHHHHHHHHHcCCChHHH
Q 007970 73 KPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM----GITLC-MTTFQSLVAAYVGFGDLEIA 147 (583)
Q Consensus 73 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A 147 (583)
++++|...|+.. ...|...|++++|.+.|++..+. |.++. ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 478888888776 34577889999999999887764 32222 56888999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhc-
Q 007970 148 ETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNE- 226 (583)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~- 226 (583)
+..++......+... ....-..+++.+..+|...
T Consensus 97 ~~~~~~Al~l~~~~g---------------------------------------------~~~~~a~~~~~lg~~~~~~l 131 (292)
T 1qqe_A 97 VDSLENAIQIFTHRG---------------------------------------------QFRRGANFKFELGEILENDL 131 (292)
T ss_dssp HHHHHHHHHHHHHTT---------------------------------------------CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC---------------------------------------------CHHHHHHHHHHHHHHHHHhh
Confidence 999988876322100 0001145788888999996
Q ss_pred CChhHHHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh
Q 007970 227 GRVSDTVRMLGAMRRQEDNASHP--DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR------ITYNILLKGYCQ 298 (583)
Q Consensus 227 g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~ 298 (583)
|++++|+..|++..........+ ...++..+...+.+.|++++|+..|+...+....... ..+..+..++..
T Consensus 132 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~ 211 (292)
T 1qqe_A 132 HDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA 211 (292)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH
Confidence 99999999999887642100011 0346777888888889999999999888875422221 145667777888
Q ss_pred cCCHHHHHHHHHHHHh
Q 007970 299 QLQIDKAKELLREMAD 314 (583)
Q Consensus 299 ~~~~~~A~~~~~~~~~ 314 (583)
.|++++|...|++.+.
T Consensus 212 ~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 212 ATDAVAAARTLQEGQS 227 (292)
T ss_dssp TTCHHHHHHHHHGGGC
T ss_pred cCCHHHHHHHHHHHHh
Confidence 8888888888888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-10 Score=102.47 Aligned_cols=209 Identities=12% Similarity=0.068 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhccc----CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------C
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQED----NASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI------G 281 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 281 (583)
...++..+..+|...|++++|+..+.++..... ...+....++..+...+...|++++|...++.+.+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999876410 011234567888999999999999999999998864 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 007970 282 -VPANRITYNILLKGYCQQLQIDKAKELLREMADD------AKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRAR--- 351 (583)
Q Consensus 282 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--- 351 (583)
.+....++..+...|...|++++|...++++++. ...+....++..+...|...|++++|..+++++...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1334677888999999999999999999988764 111223567888999999999999999999998763
Q ss_pred ----CCCCCH-HHHHHHHHHHHhcCC------HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 352 ----GIAPTK-ISYTTLMKAFALSSQ------PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 352 ----~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
...+.. ..+..+.......+. +..+...++.... ..+....++..+..+|...|++++|.+++++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112222 223333333332222 3333333333322 223345678889999999999999999999987
Q ss_pred HC
Q 007970 421 EN 422 (583)
Q Consensus 421 ~~ 422 (583)
+.
T Consensus 280 ~~ 281 (283)
T 3edt_B 280 RN 281 (283)
T ss_dssp TT
T ss_pred Hh
Confidence 53
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-08 Score=91.99 Aligned_cols=192 Identities=10% Similarity=0.054 Sum_probs=118.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGI-APT-KISY 360 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~ 360 (583)
.+...+-.+...+.+.|++++|...|+++++.....+. ...+..+..+|...|++++|+..|+....... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555666666777777777777777777654211111 45666666677777777777777777766421 111 3344
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007970 361 TTLMKAFAL--------SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYG 432 (583)
Q Consensus 361 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 432 (583)
..+..++.. .|++++|...|+++.+. .+.+......+.. +..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 555555655 66666666666666652 1212211111111 1111000 011245
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC----HHHHHHHHHHHHhh----------hhHHHH
Q 007970 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD----EELLDALADICVRA----------AFFRKA 498 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A 498 (583)
.+...|...|++++|+..|+++++. .|+ ...+..+..+|... |++++|
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~------------------~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDA------------------YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH------------------CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 6778899999999999999999987 443 36777888888876 999999
Q ss_pred HHHHHHHHHcCCCCCHH
Q 007970 499 LEIVACMEEHGIPPNKT 515 (583)
Q Consensus 499 ~~~~~~~~~~~~~p~~~ 515 (583)
...++++.+ ..|+..
T Consensus 215 ~~~~~~~~~--~~p~~~ 229 (261)
T 3qky_A 215 VELYERLLQ--IFPDSP 229 (261)
T ss_dssp HHHHHHHHH--HCTTCT
T ss_pred HHHHHHHHH--HCCCCh
Confidence 999999986 345554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.5e-09 Score=93.83 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=141.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HH
Q 007970 248 HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN---RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VV 323 (583)
Q Consensus 248 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~ 323 (583)
+.+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|...|+++++...-.+. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4467778888899999999999999999999864 334 678888999999999999999999999876432333 45
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 007970 324 SYNILIDGFIL--------IDDSAGALTFFNEMRARGIAPTK-ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIV 394 (583)
Q Consensus 324 ~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 394 (583)
.+..+..++.. .|++++|+..|+++... .|+. .....+. .+..+.. ....
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~-----~~~~ 149 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRA-----KLAR 149 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHH-----HHHH
Confidence 67778888888 99999999999999886 3432 2222211 1111111 0112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhc----------CCHhHHHHHHHHHHHH
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN----VATYGSLANGISLA----------RKPGEALLLWKEIKER 457 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 457 (583)
.+..+..+|.+.|++++|+..|+++.+. .|+ ...+..+..+|... |++++|+..|+++.+.
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 3567788899999999999999999875 343 45677777788766 8999999999999987
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-07 Score=85.58 Aligned_cols=256 Identities=12% Similarity=0.072 Sum_probs=173.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
++-..-.|.+..++.-...+.. ..+ ...-..+.+++...|+++.. ..-.|....+..+...+ ..
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~-----~~~-~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~ 83 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK-----VTD-NTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DT 83 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC-----CCC-HHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TT
T ss_pred HHHHHHhhHHHHHHHHHHhcCc-----cch-HHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-cc
Confidence 3445567888888873332211 222 23444566888888887642 12234444555444443 32
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGI-APTKISYTTLMKAFALSSQPKLANK 378 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~ 378 (583)
+ |+..|+++.... .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+
T Consensus 84 ~----a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 84 K----NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp T----CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred c----HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 2 788888876532 45666667888899999999999999999877653 2356778888999999999999999
Q ss_pred HHHHHhcCCCCCC-----CHHHHHHHHHHH--HHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 379 VFDEMLRDPRVKV-----DIVAWNMLVEGY--CRMG--LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 379 ~~~~~~~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
.+++|.+ ..| +..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+
T Consensus 158 ~l~~~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 158 IFDNYTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 9999976 245 245555565553 3334 899999999999765 4664444455558999999999999
Q ss_pred HHHHHHHHhhh--hhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH
Q 007970 450 LWKEIKERCEV--KKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516 (583)
Q Consensus 450 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 516 (583)
.++.+.+.... .++ ...|+. .++..++......|+ +|.++++++.+ ..|+...
T Consensus 233 ~L~~l~~~~p~~~~k~----------~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~ 288 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKE----------NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAF 288 (310)
T ss_dssp HHHHHHSHHHHTTTCH----------HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHH
T ss_pred HHHHHHHhcccccccc----------cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChH
Confidence 99977654210 000 002444 677677777777887 89999999986 5676653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.02 E-value=9.6e-08 Score=86.90 Aligned_cols=218 Identities=11% Similarity=0.037 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLK 294 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 294 (583)
.-.-+.++|...|++... . ...|....+..+... ...+ |+..+++..+.+ +++...+..+..
T Consensus 47 ~~~~~~Rs~iAlg~~~~~---------~---~~~~~~~a~~~la~~-~~~~----a~~~l~~l~~~~-~~~~~~~~~la~ 108 (310)
T 3mv2_B 47 LLFYKAKTLLALGQYQSQ---------D---PTSKLGKVLDLYVQF-LDTK----NIEELENLLKDK-QNSPYELYLLAT 108 (310)
T ss_dssp HHHHHHHHHHHTTCCCCC---------C---SSSTTHHHHHHHHHH-HTTT----CCHHHHHTTTTS-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccC---------C---CCCHHHHHHHHHHHH-hccc----HHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 334455777777876631 0 133444344433333 3322 677777777655 455666678888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHH--
Q 007970 295 GYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAP-----TKISYTTLMKAF-- 367 (583)
Q Consensus 295 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-----~~~~~~~l~~~~-- 367 (583)
++...|++++|++++.+.+......-+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...++.++
T Consensus 109 i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~ 186 (310)
T 3mv2_B 109 AQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIK 186 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHH
Confidence 888999999999999887543211245677888888999999999999999999875 55 355666666653
Q ss_pred HhcC--CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C----CCCCHHHHHHHHH
Q 007970 368 ALSS--QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-----G----FYPNVATYGSLAN 436 (583)
Q Consensus 368 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g----~~p~~~~~~~l~~ 436 (583)
...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. . -+-|+.++..++.
T Consensus 187 l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~ 263 (310)
T 3mv2_B 187 FATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQIT 263 (310)
T ss_dssp HHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHH
T ss_pred HHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHH
Confidence 3334 899999999998763 344333334444888999999999999876542 0 0335667766766
Q ss_pred HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.....|+ +|.++++++.+.
T Consensus 264 l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 264 LALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHhCh--HHHHHHHHHHHh
Confidence 6666776 788899988875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-08 Score=80.95 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC
Q 007970 11 KAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 11 ~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 90 (583)
..|..+...+...|+ +++|+..++++.+. .+.+..++..+...+...|++++|..+|+.+.+.+.
T Consensus 2 ~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~- 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGD--YDEAIEYYQKALEL------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP- 66 (136)
T ss_dssp HHHHHHHHHHHHHTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-
T ss_pred cHHHHHHHHHHHcCc--HHHHHHHHHHHHHc------------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-
Confidence 467888899999998 99999999999874 345788899999999999999999999999988653
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 007970 91 PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREG 157 (583)
Q Consensus 91 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 157 (583)
.+...+..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++++|...++.+...
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 457788889999999999999999999999875 556788889999999999999999999988764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-08 Score=79.69 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007970 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404 (583)
Q Consensus 325 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (583)
|..+...+...|++++|..+++++.... +.+...+..+...+...|++++|..+++++.+. .+.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 4444555555566666666666555442 234455555566666666666666666666542 2344556666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..|++++|.++++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6677777777776666542 334556666666667777777777777666654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-08 Score=86.21 Aligned_cols=134 Identities=15% Similarity=0.042 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 441 (583)
.+..++...|++++|...|++..+ ..+.+...+..+..++...|++++|++.|++.++.. +.+..++..+..+|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 377788899999999999999887 345678889999999999999999999999998863 34677888888877665
Q ss_pred CC--HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 442 RK--PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 442 g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
|. .+.+...++.... ..|....+..+..++...|++++|...|++..+ +.|+.....
T Consensus 136 ~~~~~~~~~~~~~~~~~------------------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS------------------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHC---C------------------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred hHHHHHHHHHHHHHHhC------------------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 53 3344455544431 133334455566677788999999999999874 677765433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.95 E-value=5.7e-06 Score=82.35 Aligned_cols=376 Identities=9% Similarity=-0.009 Sum_probs=228.9
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCC-cchHHHHHHHHHH
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGK-PKKFLQLFDQMHE 86 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 86 (583)
.-...|...+..+-. ++ ++.+..+|++.+. ..|++..|..-+....+.+. .+....+|+....
T Consensus 13 ~aR~vyer~l~~~P~-~~--~e~~~~iferal~-------------~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~ 76 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS-KD--YRSLESLFGRCLK-------------KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG 76 (493)
T ss_dssp CHHHHHHHHHHHHHT-TC--HHHHHHHHHHHST-------------TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CC--HHHHHHHHHHHhc-------------cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 334577777777754 55 8899999988876 35689999988888877774 4667788888776
Q ss_pred C-CCCC-CHHHHHHHHHHHH----hcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHH
Q 007970 87 F-GAKP-DVLTYNVMIKLCA----RASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRD 160 (583)
Q Consensus 87 ~-~~~~-~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 160 (583)
. |..| +...|...+..+. .+++.+.+..+|++.+......-...|......-. ......+..++..... .
T Consensus 77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~~~---~ 152 (493)
T 2uy1_A 77 QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDTLP---I 152 (493)
T ss_dssp HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHH---H
T ss_pred HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHHhH---H
Confidence 4 5333 5677777776543 34667888899999887422111223332222111 1122233333322211 0
Q ss_pred HHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-------hhHHH
Q 007970 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-------VSDTV 233 (583)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~ 233 (583)
+..|..+++.+.... . ..+...|...+..-...+. .+.+.
T Consensus 153 --------------------y~~ar~~y~~~~~~~-----------~--~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~ 199 (493)
T 2uy1_A 153 --------------------FQSSFQRYQQIQPLI-----------R--GWSVKNAARLIDLEMENGMKLGGRPHESRMH 199 (493)
T ss_dssp --------------------HHHHHHHHHHHHHHH-----------H--TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHH-----------h--hccHHHHHHHHHHHhcCCccCcchhhHHHHH
Confidence 001122222211000 0 0133456555554332211 23466
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
.+|+++... .+.+...|...+..+.+.|+++.|..+++..... |.+...+.. |....+.++. ++.+.
T Consensus 200 ~~ye~al~~----~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 200 FIHNYILDS----FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHH----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHH
Confidence 788888775 4556788888888888999999999999999987 444433332 3222222222 22221
Q ss_pred hcC---C-----C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHH
Q 007970 314 DDA---K-----I---EPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALS-SQPKLANKVFD 381 (583)
Q Consensus 314 ~~~---~-----~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~ 381 (583)
... . . ......|...+....+.++.+.|..+|+.. .. ...+...|...+..-... ++++.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0 0 011245666666666778899999999999 32 123445554333322233 36999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 382 EMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 382 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
...+.. +.++..+...++...+.|+.+.|..+|+++. .....|...+..=...|+.+.+..+++++.+..
T Consensus 345 ~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 345 SGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 998843 3445667778888889999999999999972 246777777776677899999999999988754
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-06 Score=80.70 Aligned_cols=226 Identities=8% Similarity=0.044 Sum_probs=171.1
Q ss_pred HHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHCCCCCCHHHH
Q 007970 19 RLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLG--KPKKFLQLFDQMHEFGAKPDVLTY 96 (583)
Q Consensus 19 ~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~ 96 (583)
+..+.|. ..++|+..+++++.. .|-+..+|+.--.++...| ++++++++++.+...+++ +..+|
T Consensus 41 a~~~~~e-~s~~aL~~t~~~L~~------------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW 106 (306)
T 3dra_A 41 ALMKAEE-YSERALHITELGINE------------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIW 106 (306)
T ss_dssp HHHHTTC-CSHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHH
T ss_pred HHHHcCC-CCHHHHHHHHHHHHH------------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHH
Confidence 3334443 257899999999985 3446788999999999999 999999999999987653 55667
Q ss_pred HHHHHHH----Hhc---CChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH--HHHHHHHHHHhhhHHHHHHHHh
Q 007970 97 NVMIKLC----ARA---SRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE--IAETIVQAMREGRRDVCKIIRE 167 (583)
Q Consensus 97 ~~li~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~ 167 (583)
+.--..+ ... +++++++.+++.+.+.. +-+..+|+.-.-++.+.|.++ ++++.++.+.+.+
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--------- 176 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--------- 176 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---------
Confidence 6555544 455 78999999999999986 668888888888888888888 8888888887643
Q ss_pred hhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHHh
Q 007970 168 LDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR------VSDTVRMLGAMRR 241 (583)
Q Consensus 168 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~ 241 (583)
+.|..+|+.-...+.+.++ ++++++.++.+..
T Consensus 177 ------------------------------------------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 177 ------------------------------------------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp ------------------------------------------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 4677788777777777666 7888888888887
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007970 242 QEDNASHPDHVTYTTVVSALVKAGSMD-RARQVLAEMTRIG--VPANRITYNILLKGYCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 314 (583)
. .+-|...|+.+-..+.+.|+.. .+..+...+.+.+ -+.+...+..++.+|.+.|+.++|.++++.+.+
T Consensus 215 ~----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 215 K----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp H----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred h----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5 4567888888888887777643 3555666555432 234677788888888888888888888888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.6e-08 Score=85.66 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=84.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcC
Q 007970 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMG 407 (583)
Q Consensus 328 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 407 (583)
+..+|...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+ ..+.+..++..+..+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHh
Confidence 6777788888888888888887763 34577778888888888888888888888876 34556777777777776554
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 408 L--VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 408 ~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+ .+.+...++.... ..|....+.....++...|++++|+..|+++++.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 3344555555432 1222223344455566778888888888888754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.1e-08 Score=103.44 Aligned_cols=158 Identities=12% Similarity=0.005 Sum_probs=126.5
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007970 333 ILIDDSAGALTFFNEMR--------ARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404 (583)
Q Consensus 333 ~~~~~~~~a~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (583)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...|+++.+ ..+.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHH
Confidence 67888999999998887 43 244567788888888899999999999988887 34557788888888899
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLD 483 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~ 483 (583)
..|++++|++.|++..+.. +-+...+..+..++...|++++ ++.|+++.+. .|+ ...+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~------------------~P~~~~a~~ 538 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST------------------NDGVISAAF 538 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH------------------CTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh------------------CCchHHHHH
Confidence 9999999999999988752 3356778888888999999999 9999998876 554 47888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.+..++.+.|++++|++.+++..+ +.|+..
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~ 568 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPP--TSRHFT 568 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCT--TSTTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcc--cCcccH
Confidence 888899999999999999988763 456643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-07 Score=82.88 Aligned_cols=185 Identities=12% Similarity=0.072 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH-HHHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP-A-NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV-VSYN 326 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ 326 (583)
+...+..+...+...|++++|+..|+.+.+.... + ....+..+..+|.+.|++++|+..|+++++...-.+.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777788889999999999988875311 1 13567778888888999999999998887754333332 2344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 007970 327 ILIDGFIL------------------IDDSAGALTFFNEMRARGIAPTK-ISYTTLMKAFALSSQPKLANKVFDEMLRDP 387 (583)
Q Consensus 327 ~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 387 (583)
.+..++.. .|++++|+..|+++.+. .|+. ......... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH----
Confidence 44444443 34455555555555443 2221 111110000 0000000
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-V---ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
......+...|.+.|++++|+..|+++++. .|+ . ..+..+..++.+.|++++|++.++.+...
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 011134567788999999999999999875 343 2 46778888999999999999999988775
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-08 Score=92.87 Aligned_cols=201 Identities=10% Similarity=0.026 Sum_probs=138.4
Q ss_pred hcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 225 NEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK-AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303 (583)
Q Consensus 225 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 303 (583)
..|++++|.+++++..+.. +.. +.+ .++++.|...|..+ ...|...|+++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~----~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~ 53 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL----KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLE 53 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH----CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHHHc----ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHH
Confidence 3567888999998887652 111 111 46777777777654 34577788888
Q ss_pred HHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCCHH
Q 007970 304 KAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGALTFFNEMRARGI---APT--KISYTTLMKAFALSSQPK 374 (583)
Q Consensus 304 ~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~ 374 (583)
+|...|.+.........+ ..+|..+...|...|++++|+..|++....-. .+. ..++..+...|.. |+++
T Consensus 54 ~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~ 132 (307)
T 2ifu_A 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLS 132 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHH
Confidence 888888776542111111 34677788888888999998888887654310 111 3466777788888 9999
Q ss_pred HHHHHHHHHhcCC---CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHh
Q 007970 375 LANKVFDEMLRDP---RVK-VDIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GFYPN-VATYGSLANGISLARKPG 445 (583)
Q Consensus 375 ~a~~~~~~~~~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~ 445 (583)
+|...|++..+.. +.. ....++..+..+|.+.|++++|++.|++..+. +..+. ...+..+..++...|+++
T Consensus 133 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 212 (307)
T 2ifu_A 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHH
Confidence 9999998876521 110 11467888899999999999999999998752 11111 225666667778889999
Q ss_pred HHHHHHHHHH
Q 007970 446 EALLLWKEIK 455 (583)
Q Consensus 446 ~a~~~~~~~~ 455 (583)
+|+..|++..
T Consensus 213 ~A~~~~~~al 222 (307)
T 2ifu_A 213 AAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999987
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-07 Score=82.60 Aligned_cols=185 Identities=11% Similarity=-0.014 Sum_probs=121.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HH
Q 007970 285 NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD-VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK----IS 359 (583)
Q Consensus 285 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~ 359 (583)
+...+..+...+...|++++|+..|+++++.....+. ...+..+..+|.+.|++++|+..|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4455666777888999999999999999875332222 3577788889999999999999999988753 332 13
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 360 YTTLMKAFAL------------------SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 360 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
+..+..++.. .|++++|...|+++.+. .|-+...+....... .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~-- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL-- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH--
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH--
Confidence 4444444443 34455555555555542 122222111111000 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH----HHHHHHHHHHHhhhhHHH
Q 007970 422 NGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE----ELLDALADICVRAAFFRK 497 (583)
Q Consensus 422 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 497 (583)
......+...|...|++++|+..|+++++. .|+. ..+..+..+|.+.|++++
T Consensus 147 ------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------------------~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 147 ------AKYEYSVAEYYTERGAWVAVVNRVEGMLRD------------------YPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp ------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------STTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH------------------CcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 001134566788999999999999999987 4442 568888999999999999
Q ss_pred HHHHHHHHHHcC
Q 007970 498 ALEIVACMEEHG 509 (583)
Q Consensus 498 A~~~~~~~~~~~ 509 (583)
|.+.++.+...+
T Consensus 203 A~~~~~~l~~~~ 214 (225)
T 2yhc_A 203 AEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhC
Confidence 999999987643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.1e-08 Score=88.45 Aligned_cols=168 Identities=12% Similarity=0.016 Sum_probs=114.9
Q ss_pred CcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCC
Q 007970 125 TLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPL 204 (583)
Q Consensus 125 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 204 (583)
+.+...+..+...+...|++++|...|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---------------------------------------------- 147 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS---------------------------------------------- 147 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------------------------------------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----------------------------------------------
Confidence 4556667777777888888888888888776632
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHH-HHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 007970 205 LPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYT-TVVSALVKAGSMDRARQVLAEMTRIGVP 283 (583)
Q Consensus 205 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (583)
+.+..++..+..++.+.|++++|...++.+... .|+..... .....+...++.+.|...++...... |
T Consensus 148 -----P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P 216 (287)
T 3qou_A 148 -----NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-P 216 (287)
T ss_dssp -----TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-T
T ss_pred -----CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-C
Confidence 345677777888888888888888888877654 34433222 22223556666777777777777654 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMR 349 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 349 (583)
.+...+..+...+...|++++|+..|.++++...-..+...+..++..+...|+.++|...|++..
T Consensus 217 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 217 EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 567777777888888888888888888777653222235667777777777777777777776643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.4e-07 Score=81.21 Aligned_cols=176 Identities=12% Similarity=-0.013 Sum_probs=121.5
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 007970 305 AKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS----QPKLANKVF 380 (583)
Q Consensus 305 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~ 380 (583)
|.+.|++..+ .-+...+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 5 A~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 5 PGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp TTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4555555544 2355666666666666677777777777766654 45556666666665 5 677777777
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHhHHHHHH
Q 007970 381 DEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFY-PNVATYGSLANGISL----ARKPGEALLLW 451 (583)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~a~~~~ 451 (583)
++..+. -+...+..|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .+++++|+.+|
T Consensus 77 ~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777652 356667777777766 67888888888888775421 016677778878877 77899999999
Q ss_pred HHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhh-h-----hHHHHHHHHHHHHHcCC
Q 007970 452 KEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRA-A-----FFRKALEIVACMEEHGI 510 (583)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 510 (583)
++..+. .++...+..|..+|... | ++++|..+++...+.|.
T Consensus 153 ~~A~~~------------------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 153 KGSSSL------------------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHT------------------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHc------------------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988764 34455677777777654 3 89999999999887663
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.88 E-value=9.3e-08 Score=99.87 Aligned_cols=153 Identities=16% Similarity=0.030 Sum_probs=86.1
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 297 CQQLQIDKAKELLREMA--------DDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 297 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
...|++++|++.+++.+ +. .+.+...+..+..++...|++++|+..|+++.+.. +.+...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHH
Confidence 44556666666665554 21 12234455555556666666666666666655542 234555555566666
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEAL 448 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 448 (583)
..|++++|...|+++.+ ..+.+...|..+..+|.+.|++++ ++.|++..+.. +-+...+..+..++...|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666654 223345555666666666666666 66666665542 224455666666666666666666
Q ss_pred HHHHHHHH
Q 007970 449 LLWKEIKE 456 (583)
Q Consensus 449 ~~~~~~~~ 456 (583)
+.|+++.+
T Consensus 555 ~~~~~al~ 562 (681)
T 2pzi_A 555 RTLDEVPP 562 (681)
T ss_dssp HHHHTSCT
T ss_pred HHHHhhcc
Confidence 66665553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-06 Score=77.22 Aligned_cols=175 Identities=13% Similarity=0.018 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC----CHHHHHHH
Q 007970 269 RARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID----DSAGALTF 344 (583)
Q Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~ 344 (583)
+|.+.|+...+.| +...+..+...|...+++++|..+|++..+. -+...+..+...|.. + ++++|+.+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4566666666654 5666777777777788888888888877652 356667777777766 5 78888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHH
Q 007970 345 FNEMRARGIAPTKISYTTLMKAFAL----SSQPKLANKVFDEMLRDPRVK-VDIVAWNMLVEGYCR----MGLVEEAKRI 415 (583)
Q Consensus 345 ~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 415 (583)
|++..+.| +...+..+...|.. .+++++|..+|++..+. +.. .+...+..|...|.. .+++++|+.+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 88887765 56667777777766 77888888888888763 210 126777888888888 7789999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHHHHH
Q 007970 416 IERMKENGFYPNVATYGSLANGISLA-R-----KPGEALLLWKEIKER 457 (583)
Q Consensus 416 ~~~~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~ 457 (583)
|++..+. ..+...+..|...|... | ++++|+.+|++..+.
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 9988875 23455666677776543 3 788999999888775
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.3e-06 Score=75.76 Aligned_cols=229 Identities=10% Similarity=-0.032 Sum_probs=160.6
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHhCCCcchhHHHHHHHHH---
Q 007970 64 VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS--RKHLLVFVLERILEMGITLCMTTFQSLVAAY--- 138 (583)
Q Consensus 64 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 138 (583)
+.....+....++|+++++.+...++ -+..+|+.--.++...+ ++++++..++.++..+ +-+..+|+.-..++
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHH
Confidence 33333344445689999999998764 24566888778888888 9999999999999886 55666666554444
Q ss_pred -HcC---CChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHH
Q 007970 139 -VGF---GDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSR 214 (583)
Q Consensus 139 -~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (583)
... +++++++.+++.+.+.. +.+..
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~~---------------------------------------------------pkny~ 145 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSSD---------------------------------------------------PKNHH 145 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHHC---------------------------------------------------TTCHH
T ss_pred HHhccccCCHHHHHHHHHHHHHhC---------------------------------------------------CCCHH
Confidence 444 77888888888887632 57788
Q ss_pred HHHHHHHHHHhcCChh--HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhCCCCCCH
Q 007970 215 IYTTLMKGYMNEGRVS--DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS------MDRARQVLAEMTRIGVPANR 286 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~ 286 (583)
+|+.-.-++.+.|.++ ++++.++.+.+. -+-|...|+.-.....+.+. ++++++.++.++... +-|.
T Consensus 146 aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~ 220 (306)
T 3dra_A 146 VWSYRKWLVDTFDLHNDAKELSFVDKVIDT----DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNP 220 (306)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCH
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCc
Confidence 8888888888888888 999999999886 45677788777666666665 777777777777664 5567
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDK-AKELLREMADDA-KIEPDVVSYNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
..|+.+-..+.+.|+... +..+..++.... .-..+...+..+...|.+.|+.++|+++++.+..
T Consensus 221 SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 221 STWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 777777777777666333 444555543311 1134556666666777777777777777777664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.8e-08 Score=81.30 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSA-LVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
+...+..+..++...|++++|+..++..... .|+...+..+... +...+....|...++...+.. |.+...+.
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~ 112 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLE-----YQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELAC 112 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHH
Confidence 3444555555555555555555555554442 1122222111111 111111222344444444432 22344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNE 347 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 347 (583)
.+..++...|++++|...|+++++......+...+..+...+...|+.++|...|++
T Consensus 113 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 113 ELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 445555555555555555554443211111233444444444444555544444443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-08 Score=81.78 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=2.5
Q ss_pred CChhHHH
Q 007970 227 GRVSDTV 233 (583)
Q Consensus 227 g~~~~A~ 233 (583)
|++++|+
T Consensus 79 ~~~~~A~ 85 (150)
T 4ga2_A 79 ENTDKAV 85 (150)
T ss_dssp TCHHHHH
T ss_pred CchHHHH
Confidence 3333333
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-08 Score=83.12 Aligned_cols=123 Identities=11% Similarity=-0.076 Sum_probs=82.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHH
Q 007970 331 GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVE 410 (583)
Q Consensus 331 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 410 (583)
.+...|++++|+..++...... +-+...+..+...|.+.|++++|.+.|++..+ -.+.+..+|..+..+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCchH
Confidence 3445566777777776655431 11234455667777777888888888877776 33456777778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH-HHHHHHH
Q 007970 411 EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL-WKEIKER 457 (583)
Q Consensus 411 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~ 457 (583)
+|+..|++..+.. +-+...+..+...|...|++++|.+. ++++.+.
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 8888888877652 23566777777778888877766554 4677665
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-07 Score=85.60 Aligned_cols=165 Identities=11% Similarity=0.006 Sum_probs=133.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 007970 91 PDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDL 170 (583)
Q Consensus 91 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 170 (583)
.+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...++.+....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~------------ 181 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD------------ 181 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG------------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh------------
Confidence 455667778888999999999999999999986 6678899999999999999999999998876532
Q ss_pred ccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCC
Q 007970 171 EDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI-YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249 (583)
Q Consensus 171 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 249 (583)
|+... .......+...++.++|.+.+++.... .+.
T Consensus 182 ----------------------------------------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~----~P~ 217 (287)
T 3qou_A 182 ----------------------------------------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE----NPE 217 (287)
T ss_dssp ----------------------------------------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----CTT
T ss_pred ----------------------------------------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhc----CCc
Confidence 33332 233334466778888899999888875 455
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPAN--RITYNILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
+...+..+...+...|++++|...|..+.+.. +.+ ...+..++..|...|+.++|...|++.+
T Consensus 218 ~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 218 DAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 67888899999999999999999999998864 222 6778889999999999999998887765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-07 Score=95.33 Aligned_cols=150 Identities=11% Similarity=-0.022 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 007970 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRI 415 (583)
Q Consensus 336 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 415 (583)
|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|++..+ ..+.+...+..+..+|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444444444444331 22334444444444455555555555555444 1223344444555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhh--
Q 007970 416 IERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRA-- 492 (583)
Q Consensus 416 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-- 492 (583)
+++..+.. +.+...+..+..++...|++++|++.++++.+. .|+ ...+..+..++...
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL------------------LPEEPYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHhhc
Confidence 55554431 223444444555555555555555555555443 222 34444445555555
Q ss_pred -hhHHHHHHHHHHHHH
Q 007970 493 -AFFRKALEIVACMEE 507 (583)
Q Consensus 493 -g~~~~A~~~~~~~~~ 507 (583)
|++++|.+.+++..+
T Consensus 141 ~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVA 156 (568)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHh
Confidence 555555555555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.4e-08 Score=81.77 Aligned_cols=160 Identities=10% Similarity=0.005 Sum_probs=91.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA-FAL 369 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~ 369 (583)
.+...+...|++++|...|+++++.. +.+...+..+...+...|++++|+..|+.+.... |+.......... +..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34444555566666666555554321 2234455555555556666666666665554431 232222211111 111
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 007970 370 SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP-NVATYGSLANGISLARKPGEAL 448 (583)
Q Consensus 370 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~ 448 (583)
.+....|...+++..+ ..+.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222335666766665 234457777778888888888888888888877653221 2456777777888888888888
Q ss_pred HHHHHHHH
Q 007970 449 LLWKEIKE 456 (583)
Q Consensus 449 ~~~~~~~~ 456 (583)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-05 Score=79.47 Aligned_cols=374 Identities=9% Similarity=-0.014 Sum_probs=226.1
Q ss_pred hhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 28 PVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS 107 (583)
Q Consensus 28 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 107 (583)
.+.|..+|+.+.... |. |+++.+..+|+..... .|+...|...+....+.+
T Consensus 11 i~~aR~vyer~l~~~-------------P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~ 61 (493)
T 2uy1_A 11 LSSPSAIMEHARRLY-------------MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVS 61 (493)
T ss_dssp -CCHHHHHHHHHHHH-------------HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHC-------------CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC
Confidence 667777777777641 22 8899999999999884 479999999998887776
Q ss_pred C-hhHHHHHHHHHHHh-CC-CcchhHHHHHHHHHHc----CCChHHHHHHHHHHHhhhH-HHHHHHHhhhhccccccCCC
Q 007970 108 R-KHLLVFVLERILEM-GI-TLCMTTFQSLVAAYVG----FGDLEIAETIVQAMREGRR-DVCKIIRELDLEDYSSENEG 179 (583)
Q Consensus 108 ~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 179 (583)
+ .+....+|+..+.. |. +.+...|...+..+.. .++++.+.++|+....... +...++
T Consensus 62 ~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw-------------- 127 (493)
T 2uy1_A 62 QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELW-------------- 127 (493)
T ss_dssp ----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHH--------------
T ss_pred chHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHH--------------
Confidence 4 45667788887764 42 3466788877776543 3556777888877765211 000111
Q ss_pred CCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 007970 180 DDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVS 259 (583)
Q Consensus 180 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~ 259 (583)
..|..... ..+..+...++.-. .+.+..|..++..+.... ...+...|...+.
T Consensus 128 ------~~Y~~fE~----------------~~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~---~~~s~~~W~~y~~ 180 (493)
T 2uy1_A 128 ------KDFENFEL----------------ELNKITGKKIVGDT--LPIFQSSFQRYQQIQPLI---RGWSVKNAARLID 180 (493)
T ss_dssp ------HHHHHHHH----------------HHCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH---HTCSHHHHHHHHH
T ss_pred ------HHHHHHHH----------------HhccccHHHHHHHH--hHHHHHHHHHHHHHHHHH---hhccHHHHHHHHH
Confidence 11111100 01111222222221 123444555555544321 0113345655555
Q ss_pred HHHHcC--C-----hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 007970 260 ALVKAG--S-----MDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGF 332 (583)
Q Consensus 260 ~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~ 332 (583)
--...+ - .+.+..+|+.++... +.+...|...+..+.+.|+.+.|..++++.+.. +.+...|.. |
T Consensus 181 ~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y 252 (493)
T 2uy1_A 181 LEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----Y 252 (493)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----H
T ss_pred HHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----H
Confidence 432221 1 345778999988753 667888999999999999999999999999875 333333332 2
Q ss_pred HhcCCHHHHHHHHHHHHHC---------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007970 333 ILIDDSAGALTFFNEMRAR---------GIAP---TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400 (583)
Q Consensus 333 ~~~~~~~~a~~~~~~m~~~---------~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 400 (583)
....+.++. ++.+... +..+ ....|...+..+.+.+..+.|..+|++. +..+ .+...|....
T Consensus 253 ~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A 326 (493)
T 2uy1_A 253 GLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCA 326 (493)
T ss_dssp HHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHH
T ss_pred HhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHH
Confidence 221111111 2222211 0001 1245666666666778899999999999 4222 3444554333
Q ss_pred HHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH
Q 007970 401 EGYCRMG-LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479 (583)
Q Consensus 401 ~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 479 (583)
..-...+ +.+.|..+|+...+. ++-++..+...+......|+.+.|..+|+++. ...
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~---------------------k~~ 384 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE---------------------KTS 384 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC---------------------CBH
T ss_pred HHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------HHH
Confidence 3333333 699999999999875 33345556667777778899999999998762 245
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
..|...+..=...|+.+.+.++++.+..
T Consensus 385 ~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 385 RMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777777778999999998888864
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-06 Score=80.19 Aligned_cols=171 Identities=8% Similarity=-0.055 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCC--H
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTK------ISYTTLMKAFALSSQPKLANKVFDEMLRDPRV--KVD--I 393 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~ 393 (583)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...+++..+.... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444566677888888888888877765322 22 12334555667788999999999888752111 111 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKEN-GFYPN-----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA 467 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 467 (583)
.+++.+...|...|++++|+..++++.+. ...|+ ..++..+..+|...|++++|+..++++.+.....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~------ 229 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI------ 229 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc------
Confidence 58899999999999999999999998731 01222 2578889999999999999999999998763210
Q ss_pred CCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHH-HHHHHHHHH
Q 007970 468 DSDLPPPLKPD-EELLDALADICVRAAFFRKA-LEIVACMEE 507 (583)
Q Consensus 468 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 507 (583)
+.... ..++..+..+|.+.|++++| ...+++...
T Consensus 230 ------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 230 ------NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11222 57888999999999999999 777887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-06 Score=79.81 Aligned_cols=168 Identities=9% Similarity=0.010 Sum_probs=126.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVV----SYNILIDGFILIDDSAGALTFFNEMRARGIA-PT----KISYTT 362 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 362 (583)
.+..+...|++++|..++++..+.....++.. .+..+...+...+++++|+..|+++...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999999876443334422 3445666777888999999999999874322 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcC---C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHH
Q 007970 363 LMKAFALSSQPKLANKVFDEMLRD---P-RVKV-DIVAWNMLVEGYCRMGLVEEAKRIIERMKE----NGFYPN-VATYG 432 (583)
Q Consensus 363 l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~g~~p~-~~~~~ 432 (583)
+...|...|++++|...|+++.+. . ...+ ...++..+..+|.+.|++++|++.+++..+ .+..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 899999999999999999998731 0 1122 234788999999999999999999998864 222233 56888
Q ss_pred HHHHHHHhcCC-HhHHHHHHHHHHHHhh
Q 007970 433 SLANGISLARK-PGEALLLWKEIKERCE 459 (583)
Q Consensus 433 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~ 459 (583)
.+..++...|+ +++|++.++++.....
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 89999999995 6999999999887643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=3.6e-07 Score=93.70 Aligned_cols=153 Identities=9% Similarity=-0.040 Sum_probs=105.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 264 AGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343 (583)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 343 (583)
.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++.++.. +.+...+..+..+|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 467888888888887654 4567788888888888888888888888887532 3457778888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Q 007970 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM---GLVEEAKRIIERMK 420 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~ 420 (583)
.|++..+.. +.+...+..+..++...|++++|.+.|++..+ ..+.+...+..+..++... |++++|.+.+++..
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888887763 44567788888888888888888888888876 2345677788888888888 88888888888887
Q ss_pred HC
Q 007970 421 EN 422 (583)
Q Consensus 421 ~~ 422 (583)
+.
T Consensus 156 ~~ 157 (568)
T 2vsy_A 156 AQ 157 (568)
T ss_dssp HH
T ss_pred hc
Confidence 75
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=9.2e-07 Score=77.58 Aligned_cols=126 Identities=14% Similarity=-0.066 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 007970 325 YNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYC 404 (583)
Q Consensus 325 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 404 (583)
+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...|++..+ ..+.+...+..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHH
Confidence 444555667778888888877765 355677778888888888888888888888776 23556778888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 405 RMGLVEEAKRIIERMKENGFYPN----------------VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..|++++|++.|++..+.. +.+ ...+..+..++...|++++|+..|+++.+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888999988888888742 222 267888889999999999999999999865
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-05 Score=73.25 Aligned_cols=170 Identities=8% Similarity=-0.081 Sum_probs=126.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHH
Q 007970 326 NILIDGFILIDDSAGALTFFNEMRARGI-APTKI----SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAW 396 (583)
Q Consensus 326 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 396 (583)
...+..+...|++++|..++++...... .|+.. .+..+...+...+++++|...|+++.+.....++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346678899999999999999887422 12211 2334666677778999999999999873222233 3478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCC
Q 007970 397 NMLVEGYCRMGLVEEAKRIIERMKE----N-GFYPN-VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470 (583)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~----~-g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (583)
+.+..+|...|++++|+..|+++.+ . +..+. ..++..+...|...|++++|+..++++.+.....
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--------- 229 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--------- 229 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc---------
Confidence 9999999999999999999999874 1 11222 2377888999999999999999999998764221
Q ss_pred CCCCCCCC-HHHHHHHHHHHHhhh-hHHHHHHHHHHHHH
Q 007970 471 LPPPLKPD-EELLDALADICVRAA-FFRKALEIVACMEE 507 (583)
Q Consensus 471 ~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 507 (583)
+..+. ..++..+..+|.+.| .+++|.+.+++...
T Consensus 230 ---~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 230 ---NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ---TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 11233 578889999999999 57999999999854
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.7e-07 Score=71.23 Aligned_cols=103 Identities=14% Similarity=-0.020 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
...+......|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|+..++++++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------------- 76 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--------------- 76 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---------------
Confidence 3456677778888888888888888887752 446778888888888888888888888888876
Q ss_pred CCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHH
Q 007970 473 PPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTK 516 (583)
Q Consensus 473 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 516 (583)
.|+ ...|..+..+|...|++++|++.|++..+ +.|+...
T Consensus 77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 116 (126)
T 4gco_A 77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQ--VDPSNEE 116 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcCCHH
Confidence 444 57788888888888888888888888875 4565543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3e-07 Score=75.21 Aligned_cols=103 Identities=8% Similarity=-0.058 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
+...+..+...+.+.|++++|+..|+...+..+ .+...|..+..++...|++++|+..|++..+.. |.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 567888999999999999999999999998764 367889999999999999999999999999986 667889999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDV 161 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~ 161 (583)
+|.+.|++++|...|+......++.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999998865544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-06 Score=71.85 Aligned_cols=128 Identities=14% Similarity=0.042 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
..+..+...+...|++++|...|++..+ ..+.+..++..+..++...|++++|++.+++..+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456666677788888888888888776 234567788888888889999999999999888752 4467788888888
Q ss_pred HHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHH--HHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELL--DALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~--~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
+...|++++|+..++++.+. .|+ ...+ ..++..+.+.|++++|++.++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~------------------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV------------------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH------------------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999998876 333 3444 334445778899999999888764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.5e-06 Score=79.70 Aligned_cols=136 Identities=8% Similarity=0.015 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC--
Q 007970 12 AWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA-- 89 (583)
Q Consensus 12 ~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 89 (583)
.|+.....|...|+ +++|+..|.+..+...+..+ ...-..+|+.+..+|.+.|++++|+..|++..+.-.
T Consensus 38 ~~~~a~~~~~~~g~--~~~A~~~~~~al~~~~~~~~------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQ--LEQAKDAYLQEAEAHANNRS------LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 56666677777777 77887777777664332211 011245677777777777888888777777654310
Q ss_pred -CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCc-----chhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 007970 90 -KPD--VLTYNVMIKLCARASRKHLLVFVLERILEMGITL-----CMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 90 -~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 156 (583)
.+. ..++..+...|.. |++++|+..|++..+..... ...++..+..+|.+.|++++|+..|++...
T Consensus 110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 3455666666666 77777777777666532100 134566667777777777777777776655
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-05 Score=73.39 Aligned_cols=231 Identities=10% Similarity=0.054 Sum_probs=156.9
Q ss_pred HHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHCCCC
Q 007970 12 AWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLG-KPKKFLQLFDQMHEFGAK 90 (583)
Q Consensus 12 ~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~ 90 (583)
.++.+-..+.+.+. .++|+.++++++.. .|-+..+|+.--.++...| .+++++++++.+.....
T Consensus 56 ~~~~~r~~~~~~e~--se~AL~lt~~~L~~------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP- 120 (349)
T 3q7a_A 56 AMDYFRAIAAKEEK--SERALELTEIIVRM------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL- 120 (349)
T ss_dssp HHHHHHHHHHTTCC--SHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHh------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-
Confidence 44554445554544 67899999999985 4556788999888888888 59999999999998765
Q ss_pred CCHHHHHHHHHHHHhc-C-ChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChH--------HHHHHHHHHHhhhHH
Q 007970 91 PDVLTYNVMIKLCARA-S-RKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLE--------IAETIVQAMREGRRD 160 (583)
Q Consensus 91 ~~~~~~~~li~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~ 160 (583)
.+..+|+.-...+... + ++++++++++.+.+.. +-|..+|+.-.-++.+.|.++ ++++.++.+.+..
T Consensus 121 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-- 197 (349)
T 3q7a_A 121 KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-- 197 (349)
T ss_dssp CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--
Confidence 4777888877777776 6 8899999999999875 567777776555555555555 6777776666532
Q ss_pred HHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC-------hhHHH
Q 007970 161 VCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR-------VSDTV 233 (583)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~ 233 (583)
+.|..+|+.....+.+.++ +++++
T Consensus 198 -------------------------------------------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 198 -------------------------------------------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp -------------------------------------------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred -------------------------------------------------CCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 4677888888777777776 67888
Q ss_pred HHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHhCC-----CCCCHHH
Q 007970 234 RMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSM--------------------DRARQVLAEMTRIG-----VPANRIT 288 (583)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~~~~~~ 288 (583)
+.+++.... .+-|...|+.+-..+.+.|.. ....+....+...+ -.++...
T Consensus 229 e~~~~aI~~----~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 229 IYILKSIHL----IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHh----CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 888888875 455777887777766666543 11222222222111 0244555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMA 313 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~ 313 (583)
...++..|...|+.++|.++++.+.
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5556666666666666666666554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-06 Score=75.43 Aligned_cols=145 Identities=15% Similarity=-0.062 Sum_probs=112.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGIS 439 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 439 (583)
+..+...+...|++++|...|++.. .|+...+..+..+|.+.|++++|++.+++..+.. +.+...+..+..++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 4556667888999999999998874 4588899999999999999999999999998763 457788999999999
Q ss_pred hcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCH
Q 007970 440 LARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNK 514 (583)
Q Consensus 440 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 514 (583)
..|++++|+..|+++.+......... .........|+. ..+..+..+|.+.|++++|.+.+++..+ +.|+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLID--YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEE--CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHH--HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 99999999999999988521100000 000000023333 7888899999999999999999999985 45554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-06 Score=79.61 Aligned_cols=168 Identities=8% Similarity=-0.019 Sum_probs=113.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHH
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPDV----VSYNILIDGFILIDDSAGALTFFNEMRARGI---APT--KISY 360 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~ 360 (583)
...+..+...|++++|.+.+.+.++.....++. ..+..+...+...|++++|+..+++...... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 334555666777777777776665532211111 1233345556677888888888888765321 111 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh---cCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHH
Q 007970 361 TTLMKAFALSSQPKLANKVFDEML---RDPRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKEN----GFYPN-VAT 430 (583)
Q Consensus 361 ~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~ 430 (583)
+.+...|...|++++|...|++.. +.....+ ...++..+..+|.+.|++++|++.+++..+. +.... ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 788888888899999999888876 2111111 1257888899999999999999999988643 11111 567
Q ss_pred HHHHHHHHHhcCCHhHH-HHHHHHHHHH
Q 007970 431 YGSLANGISLARKPGEA-LLLWKEIKER 457 (583)
Q Consensus 431 ~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 457 (583)
|..+..+|...|++++| ...++++...
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 88889999999999999 7778887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.63 E-value=6.3e-07 Score=73.26 Aligned_cols=103 Identities=14% Similarity=-0.006 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCC
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 471 (583)
+...+..+...+.+.|++++|++.|+++.+.. +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-------------- 99 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-------------- 99 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------------
Confidence 45567777888888888888888888888752 346778888888888888888888888888876
Q ss_pred CCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 472 PPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 472 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.|+ ...+..+..+|.+.|++++|...|++..+ +.|+..
T Consensus 100 ----~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 100 ----GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp ----SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 555 37788888888888888888888888876 345554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-06 Score=72.47 Aligned_cols=129 Identities=7% Similarity=-0.030 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
...+..+...+...|++++|...|...... .+.+...+..+...+...|++++|...++...+.. +.+...+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 87 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445677777778888888888888877765 34456677777777777888888888887777654 4456677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 007970 293 LKGYCQQLQIDKAKELLREMADDAKIEPDVVSY--NILIDGFILIDDSAGALTFFNEM 348 (583)
Q Consensus 293 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m 348 (583)
..++...|++++|...|+++..... .+...+ ..+...+...|++++|+..+...
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 7777777777777777777765422 233333 22333355666777777666654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-06 Score=68.77 Aligned_cols=103 Identities=6% Similarity=0.010 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 007970 59 AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAY 138 (583)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 138 (583)
..+......|.+.|++++|++.|++..+... .+..+|..+..++.+.|++++|+..|++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3444555555555555555555555544332 234445555555555555555555555555543 33444555555555
Q ss_pred HcCCChHHHHHHHHHHHhhhHHHHH
Q 007970 139 VGFGDLEIAETIVQAMREGRRDVCK 163 (583)
Q Consensus 139 ~~~g~~~~A~~~~~~~~~~~~~~~~ 163 (583)
...|++++|.+.|+...+..|+...
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHH
Confidence 5555555555555555554444333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-06 Score=67.96 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007970 356 TKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLA 435 (583)
Q Consensus 356 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 435 (583)
+...+..+...+...|++++|...|++..+ ..+.+...+..+..++...|++++|++.+++..+.. +.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345566666677777777777777777765 234456677777777777777777777777777642 33566777777
Q ss_pred HHHHhcCCHhHHHHHHHHHHHH
Q 007970 436 NGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.++...|++++|++.|+++.+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 7777778888888888777765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1e-06 Score=72.02 Aligned_cols=108 Identities=8% Similarity=-0.065 Sum_probs=84.3
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.|+.+.. ..+.+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l- 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM- 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence 3445544 223455667778888889999999999999888752 447778888888889999999999999998876
Q ss_pred hhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 459 EVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+ ...+..+..+|...|++++|.+.+++..+
T Consensus 85 -----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 85 -----------------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 454 47788888899999999999999998875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.8e-05 Score=69.67 Aligned_cols=185 Identities=9% Similarity=-0.003 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCcchhHHHHHHHH
Q 007970 59 AAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS-RKHLLVFVLERILEMGITLCMTTFQSLVAA 137 (583)
Q Consensus 59 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 137 (583)
..++.+-....+.+..++|+++++.+...+. -+..+|+.--..+...+ .+++++..++.+.... +-+..+|+.-..+
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wl 132 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLL 132 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3445555555566667899999999998764 35667887777777788 5999999999999876 5677788876666
Q ss_pred HHcC-C-ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHH
Q 007970 138 YVGF-G-DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRI 215 (583)
Q Consensus 138 ~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (583)
+.+. + ++++++++++.+.+. .+.+..+
T Consensus 133 L~~l~~~~~~~EL~~~~k~L~~---------------------------------------------------dpkNy~A 161 (349)
T 3q7a_A 133 LDRISPQDPVSEIEYIHGSLLP---------------------------------------------------DPKNYHT 161 (349)
T ss_dssp HHHHCCSCCHHHHHHHHHHTSS---------------------------------------------------CTTCHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHh---------------------------------------------------CCCCHHH
Confidence 6665 6 778888888877653 2567888
Q ss_pred HHHHHHHHHhcCChh--------HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhC
Q 007970 216 YTTLMKGYMNEGRVS--------DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS-------MDRARQVLAEMTRI 280 (583)
Q Consensus 216 ~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~ 280 (583)
|+.-.-++.+.+.++ ++++.++++.+. .+-|...|+.....+.+.+. ++++++.++.++..
T Consensus 162 W~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~----dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 162 WAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV----DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 887777776666666 888888888876 45677888888777777765 57777777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 007970 281 GVPANRITYNILLKGYCQQLQ 301 (583)
Q Consensus 281 ~~~~~~~~~~~l~~~~~~~~~ 301 (583)
. +-|...|+.+-..+.+.|.
T Consensus 238 ~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 238 I-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp C-TTCHHHHHHHHHHHHHTTC
T ss_pred C-CCCHHHHHHHHHHHHhcCC
Confidence 4 5566777666666655554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-06 Score=66.79 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
...|..+...+...|+ +++|+..|+++.+. .+.+..++..+...+...|++++|..+|+.+.+...
T Consensus 9 ~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGD--YDEAIEYYQKALEL------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (125)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH------------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 4567777777777777 77888777777764 344566777777777777888888887777776542
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
.+..++..+...+...|++++|...++++.+.. +.+...+..+..++.
T Consensus 75 -~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 75 -NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 355667777777777777777777777777664 344455555544443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=71.66 Aligned_cols=100 Identities=12% Similarity=-0.028 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.+...+..+...+.+.|++++|+..|+..... .+.+...|..+..++...|++++|+..|+.+.... +.+...+.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~ 93 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence 34567777888888888888888888888775 34567778888888888888888888888888764 45667778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
.+..+|...|++++|...|++.++.
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888887664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.55 E-value=4.3e-06 Score=65.63 Aligned_cols=98 Identities=18% Similarity=0.167 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
...+..+...+...|++++|..+|+++.+. .+.+..++..+..++.+.|++++|..+++++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 345555566666666666666666666552 23455666666677777777777777777766542 335566666677
Q ss_pred HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+...|++++|...++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 777777777777777777654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-06 Score=79.58 Aligned_cols=194 Identities=15% Similarity=0.105 Sum_probs=121.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Q 007970 321 DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLV 400 (583)
Q Consensus 321 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 400 (583)
+...+..+...+...|++++|+..|++..... +.+...+..+..++...|++++|...++++.+ ..+.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 45566777777888888888888888887752 33677788888888889999999999988876 3456678888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH
Q 007970 401 EGYCRMGLVEEAKRIIERMKENGFYPNV-ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE 479 (583)
Q Consensus 401 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 479 (583)
.+|...|++++|+..|++..+.. |+. ..+...+..... ..++.. +...... ....+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~----------------~~~~~~ 137 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEER----------------RIHQES 137 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT----------------CCCCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHH----------------HHhhhH
Confidence 99999999999999998887531 211 011111111111 111111 1122221 123444
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 007970 480 ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGLP 559 (583)
Q Consensus 480 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 559 (583)
.+...+... ..|++++|++.++...+ ..|+.......+..++.+ ..+.+++|.+++.+..
T Consensus 138 ~i~~~l~~l--~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~----------------~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 138 ELHSYLTRL--IAAERERELEECQRNHE--GHEDDGHIRAQQACIEAK----------------HDKYMADMDELFSQVD 197 (281)
T ss_dssp HHHHHHHHH--HHHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHH----------------HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHH----------------HHHHHHHHHHHHHhhh
Confidence 444444332 36999999999988764 567665443332222222 2367788888886653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.53 E-value=3e-06 Score=73.45 Aligned_cols=160 Identities=13% Similarity=-0.040 Sum_probs=96.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCC-CCHHHHHHHHHHHHHcCCH
Q 007970 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLR---DPRVK-VDIVAWNMLVEGYCRMGLV 409 (583)
Q Consensus 334 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~-~~~~~~~~li~~~~~~g~~ 409 (583)
..|++++|.++++.+... .......+..+...+...|++++|...+++... ..+.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345556666543333221 112344555555666666666666666665543 11111 2245667777788888888
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHH
Q 007970 410 EEAKRIIERMKEN----GFYP--NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EEL 481 (583)
Q Consensus 410 ~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~ 481 (583)
++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+.... .-.+. ..+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~ 149 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ-------------ADDQVAIACA 149 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------------TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-------------ccchHHHHHH
Confidence 8888888876542 1111 1345677777788888999998888888765321 00111 245
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+..+..++...|++++|.+.+++..+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67778888889999999988888754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-06 Score=68.17 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=92.3
Q ss_pred CchHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 007970 8 PHVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 8 p~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 87 (583)
.+...|..+...+...|+ +++|+..|+++.+. .+.+...+..+..++...|++++|...++...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 75 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVEN--FEAAVHFYGKAIEL------------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75 (131)
T ss_dssp HHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccC--HHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc
Confidence 345677777788888887 88888888888774 3446778888888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCCh
Q 007970 88 GAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDL 144 (583)
Q Consensus 88 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 144 (583)
.. .+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 76 DP-AYSKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred Cc-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 43 346677778888888888888888888888774 44666777777777666654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-06 Score=73.78 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=87.6
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--
Q 007970 368 ALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG-ISLARKP-- 444 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~-- 444 (583)
...|++++|...++...+ ..+.+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 345677778888877766 234567788888888888888888888888887652 3366677777777 6778887
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
++|+..++++.+. .|+ ...+..+..+|...|++++|...++++.+
T Consensus 98 ~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALAL------------------DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 8888888888876 444 56777788888888888888888888875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.1e-06 Score=66.16 Aligned_cols=119 Identities=9% Similarity=0.024 Sum_probs=86.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 007970 209 FAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288 (583)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (583)
.+.+...+..+...+...|++++|.+.|++.... .+.+...+..+...+...|++++|...++.+.+.. +.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 86 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG 86 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence 3556778888888888888888888888888775 34467777778888888888888888888887754 446677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 334 (583)
+..+..++...|++++|...|++..+.. +.+...+..+..++..
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHH
Confidence 7777888888888888888888776542 1233444445444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=8.8e-06 Score=74.72 Aligned_cols=98 Identities=10% Similarity=-0.007 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+...+..+...+.+.|++++|+..|...... .+.+...|..+..++.+.|++++|...++.+.+.. +.+...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4556666777777777777777777777664 23356666777777777777777777777776653 445666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 007970 292 LLKGYCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~ 314 (583)
+..+|...|++++|...|++..+
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777766654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.3e-06 Score=67.02 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
..+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 44555555666666666666666666552 23455666666666777777777777777766542 3345566666667
Q ss_pred HHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhh
Q 007970 438 ISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAF 494 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 494 (583)
+...|++++|...++++.+. .| +...+..+..++.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL------------------DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH------------------STTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhc------------------CccchHHHHHHHHHHHHHhc
Confidence 77777777777777776665 33 34555556666655554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=5e-06 Score=78.57 Aligned_cols=95 Identities=12% Similarity=-0.051 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
..+|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|+..|+++.+.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------------- 259 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--------------- 259 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------
Confidence 4678889999999999999999999998863 447888999999999999999999999999986
Q ss_pred CCCCCC-HHHHHHHHHHHHhhhhHHHH-HHHHHHHH
Q 007970 473 PPLKPD-EELLDALADICVRAAFFRKA-LEIVACME 506 (583)
Q Consensus 473 ~~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 506 (583)
.|+ ...+..+..++.+.|++++| ...++.|.
T Consensus 260 ---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 260 ---YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp ---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 57888889999999999988 45666664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7.2e-07 Score=84.39 Aligned_cols=133 Identities=12% Similarity=0.022 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 007970 57 DTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD--------------VLTYNVMIKLCARASRKHLLVFVLERILEM 122 (583)
Q Consensus 57 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 122 (583)
+...+..+...+.+.|++++|+..|+...+...... ..+|..+..++.+.|++++|+..+++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 577899999999999999999999999988653321 478888999999999999999999999998
Q ss_pred CCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCC
Q 007970 123 GITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEP 202 (583)
Q Consensus 123 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 202 (583)
. +.+...+..+..+|...|++++|...|+......
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------------------------------------------- 260 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-------------------------------------------- 260 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------------------
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------------------------------------------
Confidence 6 6678889999999999999999999999887632
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 007970 203 PLLPKTFAPNSRIYTTLMKGYMNEGRVSDT-VRMLGAMRR 241 (583)
Q Consensus 203 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~ 241 (583)
+.+..++..+..++.+.|+.++| .+.|..|..
T Consensus 261 -------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 261 -------PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577888888999999998888 445555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-06 Score=67.50 Aligned_cols=111 Identities=14% Similarity=0.035 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
...+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|++.++++++....
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~------------ 74 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE------------ 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc------------
Confidence 4567788899999999999999999999863 446788999999999999999999999999876321
Q ss_pred CCCCCC----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 473 PPLKPD----EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 473 ~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
..++ ..+|..+..++...|++++|++.+++... ..|++.....+
T Consensus 75 --~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 75 --TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred --cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 1222 24677888999999999999999999875 45777655443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.48 E-value=4.7e-06 Score=70.50 Aligned_cols=122 Identities=11% Similarity=0.144 Sum_probs=74.6
Q ss_pred ccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHH
Q 007970 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTY 254 (583)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 254 (583)
+...|++++|...++..+. ..+.+..+|..+..+|...|++++|...|+..... .+.+...+
T Consensus 20 ~~~~~~~~~A~~~~~~al~--------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~ 81 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--------------ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL----RGENAELY 81 (177)
T ss_dssp CC-----CCCCHHHHHHHH--------------HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HCSCHHHH
T ss_pred hhhccCHHHHHHHHHHHHH--------------hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHH
Confidence 3455667777777766551 12345667777777777777777777777776664 23345556
Q ss_pred HHHHHH-HHHcCCh--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 007970 255 TTVVSA-LVKAGSM--DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 255 ~~ll~~-~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
..+..+ +...|++ ++|...++.+.+.. +.+...+..+..+|...|++++|...|+++++.
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666 5566766 77777777766653 344566666666677777777777777666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.1e-06 Score=73.24 Aligned_cols=199 Identities=9% Similarity=-0.065 Sum_probs=140.5
Q ss_pred HHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHhCCCCCC---------
Q 007970 222 GYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV-------VSALVKAGSMDRARQVLAEMTRIGVPAN--------- 285 (583)
Q Consensus 222 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~~~~~~~~~~--------- 285 (583)
++ ..++...|.+.|.++... .+-....|..+ ...+.+.++..+++..+..... +.|+
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~----dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNY----DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIG 88 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECC
T ss_pred cc-cCCCHHHHHHHHHHHHHh----ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccC
Confidence 44 689999999999999986 34457778777 4555555555555555554443 1111
Q ss_pred -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 007970 286 -------------RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARG 352 (583)
Q Consensus 286 -------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 352 (583)
......+..++...|++++|.++|..+... .|+......+...+.+.+++++|+..|+......
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 233455677888999999999999888542 3544455566667889999999999998554431
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 007970 353 IAPT--KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV 428 (583)
Q Consensus 353 ~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 428 (583)
.|. ...+..+..++...|++++|+..|++.... ...| ..........++.+.|+.++|..+|+++... .|+.
T Consensus 166 -d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~ 241 (282)
T 4f3v_A 166 -DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEP 241 (282)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCH
T ss_pred -CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH
Confidence 111 236777888899999999999999999752 2214 3346677778899999999999999999985 5664
Q ss_pred HHHHHH
Q 007970 429 ATYGSL 434 (583)
Q Consensus 429 ~~~~~l 434 (583)
.....|
T Consensus 242 ~~~~aL 247 (282)
T 4f3v_A 242 KVAAAL 247 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-06 Score=66.48 Aligned_cols=96 Identities=14% Similarity=0.070 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|+..++++.+.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------- 67 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--------------- 67 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------------
Confidence 3456666777778888888888888877652 345677777788888888888888888888765
Q ss_pred CCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 473 PPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 473 ~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+ ...+..+..++...|++++|...+++..+
T Consensus 68 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 68 ---DPNFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 444 46777777888888888888888887764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-06 Score=69.97 Aligned_cols=97 Identities=9% Similarity=-0.072 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCC
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 471 (583)
+...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|+..|+++.+.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 81 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM-------------- 81 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------------
Confidence 44556677778888899999999998888752 346777888888888899999999999988876
Q ss_pred CCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 472 PPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 472 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+ ...+..+..+|...|++++|.+.++...+
T Consensus 82 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 82 ----DINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp ----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444 46777888888899999999999988865
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.9e-06 Score=73.55 Aligned_cols=139 Identities=16% Similarity=0.048 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccC-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CCC--
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDN-AS-HPDHVTYTTVVSALVKAGSMDRARQVLAEMTRI----GVP-- 283 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-- 283 (583)
...++..+...+...|++++|...+++....... +. .....++..+...+...|++++|...+++..+. +..
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 4667788888888899999998888887663111 11 112456677777888888888888888876643 211
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 284 ANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDV----VSYNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 284 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
.....+..+...+...|++++|...+++.........+. .++..+...+...|++++|...+++..+
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 123456667777778888888888877765321111121 2345566666777777777777666543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-05 Score=71.32 Aligned_cols=187 Identities=10% Similarity=-0.070 Sum_probs=137.8
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCCCC--------------
Q 007970 263 KAGSMDRARQVLAEMTRIGVPANRITYNIL-------LKGYCQQLQIDKAKELLREMADDAKIEPD-------------- 321 (583)
Q Consensus 263 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------------- 321 (583)
..++.+.|.+.|..+.... |-....|..+ ...+...++..++...+...+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~---l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ---ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT---CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc---CChhhhhhhhccCCcccc
Confidence 5799999999999999875 4566777766 4555555555555555554432 1221
Q ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-
Q 007970 322 --------VVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD- 392 (583)
Q Consensus 322 --------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 392 (583)
...+..+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...+. . .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~ 169 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFL 169 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-Cccc
Confidence 2344556677889999999999999887653 54445555566788999999999999876552 1 111
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 393 -IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN--VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 393 -~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+..+..++.+.|++++|++.|++.......|. .........++.+.|+.++|...|+++...
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34678889999999999999999999985433254 346667777899999999999999999987
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00031 Score=64.94 Aligned_cols=189 Identities=8% Similarity=0.025 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHH
Q 007970 302 IDKAKELLREMADDAKIEPDVVSYNILIDGFILID--DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQ-PKLANK 378 (583)
Q Consensus 302 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~ 378 (583)
+++++.+++.++... +.+..+|+.-...+...+ .+++++.++..+.+.. +-+...|+--.-.+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 455666666655432 345555555555555555 3566666666666653 3345555555445555555 466666
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRM--------------GLVEEAKRIIERMKENGFYPNVATYGSLANGISLA--- 441 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--- 441 (583)
.++.+.+ ..+.|...|+.....+.+. +.++++++.+.+..... +-|...|+.+-..+...
T Consensus 167 ~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 167 FTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence 6666665 2345566666555555444 45788888888888752 44666776665555544
Q ss_pred --------CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHH---HHHhhhhHHHHHHHHHHHHHcC
Q 007970 442 --------RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALAD---ICVRAAFFRKALEIVACMEEHG 509 (583)
Q Consensus 442 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~ 509 (583)
+.++++++.++++.+. .||. -++..++. .....|..+++...+.++.+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~------------------~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~-- 303 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQEL------------------EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-- 303 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--
T ss_pred cccchHHHHHHHHHHHHHHHHHhh------------------CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--
Confidence 4578899999999876 6765 33333322 22245777888888888875
Q ss_pred CCCCHHH
Q 007970 510 IPPNKTK 516 (583)
Q Consensus 510 ~~p~~~~ 516 (583)
++|....
T Consensus 304 ~Dp~r~~ 310 (331)
T 3dss_A 304 VDPMRAA 310 (331)
T ss_dssp HCGGGHH
T ss_pred hCcchhh
Confidence 5666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-05 Score=63.78 Aligned_cols=97 Identities=16% Similarity=0.079 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANG 437 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 437 (583)
..+......+...|++++|...|++..+ ..+.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4556666777788888888888888776 335567788888888888888888888888888752 3356778888888
Q ss_pred HHhcCCHhHHHHHHHHHHHH
Q 007970 438 ISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~ 457 (583)
+...|++++|+..|+++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888888776
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-05 Score=61.39 Aligned_cols=102 Identities=11% Similarity=-0.070 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
...+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|+..++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 67 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------------- 67 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---------------
Confidence 4566777788888888888888888887652 346777788888888888888888888888876
Q ss_pred CCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 473 PPLKP-DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 473 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.| +...+..+..++...|++++|.+.+++..+ ..|+..
T Consensus 68 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~ 106 (118)
T 1elw_A 68 ---KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLK--HEANNP 106 (118)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCH
T ss_pred ---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--cCCCCH
Confidence 44 457777888888888888888888888874 345443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.3e-05 Score=65.21 Aligned_cols=98 Identities=11% Similarity=-0.045 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
...+..+...+...|++++|...|++..+ ..+.+...|..+..+|.+.|++++|+..|++.++.. +.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566666677777778888777777766 234467777788888888888888888888887752 335677777888
Q ss_pred HHHhcCCHhHHHHHHHHHHHH
Q 007970 437 GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 437 ~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+|...|++++|+..|+++.+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888776
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-05 Score=66.43 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITY 289 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 289 (583)
+.+...+..+...+.+.|++++|++.|++.... .+.+...|..+..++...|++++|+..++..++.. +.+...+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 82 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAW 82 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 345677888889999999999999999998885 34467888888889999999999999999988865 5567888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 007970 290 NILLKGYCQQLQIDKAKELLREMADDAKIEPD 321 (583)
Q Consensus 290 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 321 (583)
..+..+|...|++++|...|++.++...-.++
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 88889999999999999999888775433344
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.34 E-value=9.3e-06 Score=64.33 Aligned_cols=98 Identities=13% Similarity=0.112 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 007970 358 ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGF--YPN----VATY 431 (583)
Q Consensus 358 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~ 431 (583)
..+..+...+...|++++|...|+...+ ..+.+...+..+..++...|++++|...++++.+... .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4455666667777777777777777765 2345667777777778888888888888887765321 122 5677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 432 GSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 432 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+..++...|++++|.+.|+++.+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777888888888888888888775
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-05 Score=63.58 Aligned_cols=97 Identities=13% Similarity=0.077 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG--FYPN----VATYG 432 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g--~~p~----~~~~~ 432 (583)
.+..+...+.+.|++++|+..|++.++ -.|.+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566666677777777777777665 234456677777777777777777777777766421 1111 23566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 433 SLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+..++...|++++|++.|++.++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6667777788888888888877765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-05 Score=63.41 Aligned_cols=101 Identities=14% Similarity=0.007 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007970 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSL 434 (583)
Q Consensus 355 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 434 (583)
.+...+..+...+...|++++|...|+...+ ..+.+...|..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4566777777788888888888888888776 234567788888888888888888888888888753 3357788888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 435 ANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
..++...|++++|+..|+++.+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 888888899999998888888763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-05 Score=69.03 Aligned_cols=94 Identities=13% Similarity=-0.101 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
.+|..+..+|.+.|++++|+..+++..+. .+.+...+..+..+|...|++++|+..|+++.+.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------------- 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL---------------- 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------
Confidence 67788888899999999999999998876 2446778888888999999999999999998876
Q ss_pred CCCCC-HHHHHHHHHHHHhhhhHHHHH-HHHHHHH
Q 007970 474 PLKPD-EELLDALADICVRAAFFRKAL-EIVACME 506 (583)
Q Consensus 474 ~~~p~-~~~~~~l~~~~~~~g~~~~A~-~~~~~~~ 506 (583)
.|+ ..++..+..++...++.+++. ..+..|.
T Consensus 152 --~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 152 --NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp --STTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 554 477777888888888887777 4555553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=7.8e-06 Score=66.22 Aligned_cols=99 Identities=12% Similarity=-0.024 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
+...+..+...+.+.|++++|+..|+..... .+.+...|..+..++...|++++|...|+...+.. +.+...+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 91 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHH
Confidence 4556777788888899999999999888875 34567788888888888999999999998888765 556777788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 007970 292 LLKGYCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~ 315 (583)
+..+|...|++++|...|+..++.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888889999998888887654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=63.16 Aligned_cols=93 Identities=15% Similarity=0.015 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCC
Q 007970 396 WNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPL 475 (583)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (583)
+..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+++.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------------------ 80 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML------------------ 80 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------
Confidence 4556677888999999999999998752 347778888888899999999999999999876
Q ss_pred CCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 476 KPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 476 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+ ...+..+..++.+.|++++|+..+++..+
T Consensus 81 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 81 DPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 554 47888888999999999999999999874
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-05 Score=60.57 Aligned_cols=110 Identities=12% Similarity=-0.001 Sum_probs=74.5
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
++..|..+...+...|+ +++|+..|++.... .+.+...+..+..++...|++++|...++...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 68 (118)
T 1elw_A 3 QVNELKEKGNKALSVGN--IDDALQCYSEAIKL------------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 68 (118)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHccc--HHHHHHHHHHHHHH------------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34566667777777777 77787777777764 34466777777777777777777777777777654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
. .+...+..+..++...|++++|...+++..+.+ +.+...+..+
T Consensus 69 ~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 69 P-DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred c-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 2 245666677777777777777777777777654 3344444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-05 Score=63.30 Aligned_cols=110 Identities=11% Similarity=0.008 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..++++.+....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------ 70 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE------------ 70 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc------------
Confidence 4567888899999999999999999998763 457788899999999999999999999999886421
Q ss_pred CCCCCC----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHH
Q 007970 473 PPLKPD----EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKK 519 (583)
Q Consensus 473 ~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 519 (583)
..++ ..++..+..++.+.|++++|.+.+++..+. .|++.....
T Consensus 71 --~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 117 (131)
T 1elr_A 71 --NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKK 117 (131)
T ss_dssp --STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred --cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 1222 667888899999999999999999999874 456554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.7e-05 Score=62.44 Aligned_cols=103 Identities=9% Similarity=-0.084 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhcccc
Q 007970 391 VDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466 (583)
Q Consensus 391 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (583)
.+...+..+...+...|++++|++.|++..+. .|+ ...+..+..+|...|++++|+..++++.+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------- 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--------- 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---------
Confidence 45677777888888888888888888888764 455 567777777888888888888888888775
Q ss_pred CCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 467 ADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 467 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
.| +...+..+..+|...|++++|...+++..+ +.|+..
T Consensus 95 ---------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~ 133 (148)
T 2dba_A 95 ---------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNK 133 (148)
T ss_dssp ---------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCH
T ss_pred ---------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcH
Confidence 44 456777788888888888888888888875 345443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-05 Score=62.93 Aligned_cols=104 Identities=10% Similarity=-0.026 Sum_probs=92.8
Q ss_pred CcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHH
Q 007970 55 KPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSL 134 (583)
Q Consensus 55 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 134 (583)
+.++..+..+...+...|++++|+..|+....... .+...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 45788999999999999999999999999988753 357889999999999999999999999999986 5678899999
Q ss_pred HHHHHcCCChHHHHHHHHHHHhhhHH
Q 007970 135 VAAYVGFGDLEIAETIVQAMREGRRD 160 (583)
Q Consensus 135 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 160 (583)
..++...|++++|...|+......|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999998876554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=3.1e-05 Score=66.78 Aligned_cols=116 Identities=12% Similarity=0.024 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN----------------VATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
...+..+...+.+.|++++|++.|++..+.. +.+ ...+..+..+|...|++++|+..++++.+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4456667777888888888888888887642 112 26788889999999999999999999998
Q ss_pred HhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhh
Q 007970 457 RCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 528 (583)
.. +.+...+..+..+|...|++++|.+.+++..+. .|+.......+..++...
T Consensus 117 ~~-----------------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 117 ID-----------------KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HS-----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHH
T ss_pred hC-----------------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHH
Confidence 62 334688889999999999999999999999863 455443333334444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.1e-05 Score=72.83 Aligned_cols=59 Identities=14% Similarity=0.244 Sum_probs=31.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPD-------------HVTYTTVVSALVKAGSMDRARQVLAEMT 278 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 278 (583)
...+.+.|++++|++.|..+.+......... ...+..+...|...|++++|.+.+..+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4566677777777777777766521110000 0124445555555555555555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=4.6e-05 Score=74.99 Aligned_cols=171 Identities=9% Similarity=-0.066 Sum_probs=109.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCCCHHH
Q 007970 325 YNILIDGFILIDDSAGALTFFNEMRARG-IAPTKI----SYTTLMKAFALSSQPKLANKVFDEMLR----DPRVKVDIVA 395 (583)
Q Consensus 325 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 395 (583)
+..+...|...|++++|.+++..+...- ..++.. +.+.+...+...|++++|..+++.... ......-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666777777776666654321 111111 122222233445777888777766543 1122223567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCC
Q 007970 396 WNMLVEGYCRMGLVEEAKRIIERMKEN--GF--YP-NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSD 470 (583)
Q Consensus 396 ~~~li~~~~~~g~~~~A~~~~~~~~~~--g~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 470 (583)
+..+...|...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++........
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--------- 208 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI--------- 208 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC---------
Confidence 788899999999999999999987642 11 12 24578888889999999999999999887653210
Q ss_pred CCCCCCCC--HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 471 LPPPLKPD--EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 471 ~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+.+|. ...+..+...+...|++++|...+.+..+
T Consensus 209 ---~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 209 ---YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 00112 24566677788889999999998887743
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.0019 Score=59.69 Aligned_cols=223 Identities=10% Similarity=0.012 Sum_probs=160.0
Q ss_pred HHhcCChh-HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 223 YMNEGRVS-DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS----------MDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 223 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
..+.|.++ +|+++++.+... .+-+...|+.--..+...+. +++++.+++.+.... |-+..+|+.
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 34566655 899999999874 23334556544444433332 678999999998765 668888888
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 007970 292 LLKGYCQQL--QIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD-SAGALTFFNEMRARGIAPTKISYTTLMKAFA 368 (583)
Q Consensus 292 l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 368 (583)
-.-++...+ .+++++.+++.+++.. +.+..+|+.-...+...|. ++++++.+..+.... +-|...|+.....+.
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 877788877 4899999999998754 5678888888877888888 589999999999875 446777766665555
Q ss_pred hc--------------CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCC
Q 007970 369 LS--------------SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM-----------GLVEEAKRIIERMKENG 423 (583)
Q Consensus 369 ~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~g 423 (583)
.. +.++++++.+..... ..|-|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~- 267 (331)
T 3dss_A 191 QLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL- 267 (331)
T ss_dssp HHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-
Confidence 54 457889999998887 4567788887665555554 4588999999999975
Q ss_pred CCCCH-HHHHHHHH---HHHhcCCHhHHHHHHHHHHHH
Q 007970 424 FYPNV-ATYGSLAN---GISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 424 ~~p~~-~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.||. ..+..++. +....|..+++..++.++++.
T Consensus 268 -~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 268 -EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred -CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4554 22222221 222467788899999999876
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-05 Score=60.95 Aligned_cols=97 Identities=7% Similarity=-0.044 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--CHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPA--NRITYN 290 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 290 (583)
..++..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...++...+.. +. +...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence 445556666666777777777777766654 23345566666666666666666666666666543 23 455566
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHh
Q 007970 291 ILLKGYCQQ-LQIDKAKELLREMAD 314 (583)
Q Consensus 291 ~l~~~~~~~-~~~~~A~~~~~~~~~ 314 (583)
.+..++... |++++|.+.++.+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 666666666 666666666666654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-05 Score=60.78 Aligned_cols=98 Identities=13% Similarity=0.006 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 007970 357 KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP--NVATYGSL 434 (583)
Q Consensus 357 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l 434 (583)
...+..+...+...|++++|...|+++.+ ..+.+...+..+..++...|++++|.+.+++..+.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44555666667777777777777777765 234456677777777777788888888887777652 23 46677777
Q ss_pred HHHHHhc-CCHhHHHHHHHHHHHH
Q 007970 435 ANGISLA-RKPGEALLLWKEIKER 457 (583)
Q Consensus 435 ~~~~~~~-g~~~~a~~~~~~~~~~ 457 (583)
..++... |++++|++.++++...
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7777777 8888888887777654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.8e-05 Score=60.81 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcC----HHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPD----TAAYNAVLNACANLGKPKKFLQLFDQMH 85 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 85 (583)
...|..+...+...|+ +++|+..|++..+ ..|+ ...+..+..+|...|++++|+..++...
T Consensus 28 ~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~-------------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 92 (148)
T 2dba_A 28 VEQLRKEGNELFKCGD--YGGALAAYTQALG-------------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92 (148)
T ss_dssp HHHHHHHHHHHHTTTC--HHHHHHHHHHHHT-------------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--HHHHHHHHHHHHH-------------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3444444444444444 5555555555443 1222 3444445555555555555555555544
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 007970 86 EFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEM 122 (583)
Q Consensus 86 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 122 (583)
+... .+...+..+..++...|++++|...|++..+.
T Consensus 93 ~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 93 EKDG-GDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHTS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhCc-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4321 13344444444555555555555555555444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-05 Score=61.93 Aligned_cols=99 Identities=8% Similarity=-0.018 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 007970 60 AYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYV 139 (583)
Q Consensus 60 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 139 (583)
.+..+...+.+.|++++|+..|+...+... .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 456677888999999999999999998653 367888899999999999999999999999986 567889999999999
Q ss_pred cCCChHHHHHHHHHHHhhhHH
Q 007970 140 GFGDLEIAETIVQAMREGRRD 160 (583)
Q Consensus 140 ~~g~~~~A~~~~~~~~~~~~~ 160 (583)
..|++++|...++...+..|+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHHhCcC
Confidence 999999999999998876554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=4e-05 Score=63.24 Aligned_cols=137 Identities=14% Similarity=0.033 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD----IVAWNMLVEGYCRMGLVEEAKRIIERMKENGF-YPN----VA 429 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~ 429 (583)
++..+...+...|++++|...+++..+.....++ ..++..+...+...|++++|.+.+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445555556666666666666655431000011 24667777888888888888888887764210 111 34
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+..+...+...|++++|...+++..+..... +..+. ..++..+..++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL------------KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc------------cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66777788889999999999999887653210 00111 35677788899999999999999998764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0001 Score=58.11 Aligned_cols=92 Identities=13% Similarity=-0.005 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNV---ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
..+...+.+.|++++|.+.|+++.+.. +.+. ..+..+..++...|++++|+..|+++.+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---------------- 68 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---------------- 68 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----------------
Confidence 345566777888888888888877642 1222 46667777788888888888888888776
Q ss_pred CCCCC----HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 474 PLKPD----EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 474 ~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+ ...+..+..++.+.|++++|...++++.+
T Consensus 69 --~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 69 --YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp --CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333 45667777888888888888888888865
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.07 E-value=4.7e-05 Score=63.15 Aligned_cols=102 Identities=16% Similarity=-0.013 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------C----------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKEN-------G----------FYPNVATYGSLANGISLARKPGEALLLWKEIKE 456 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------g----------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 456 (583)
..+......+.+.|++++|+..|.+.++. . -+.+...|..+..+|.+.|++++|+..++++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555666667777777777777766543 0 011235677788888888888888888888887
Q ss_pred HhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH
Q 007970 457 RCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT 515 (583)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (583)
. .|+ ...|..+..+|...|++++|...+++..+ +.|+..
T Consensus 92 ~------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 92 R------------------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp H------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred c------------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 6 444 57788888888888889988888888875 456554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=2e-05 Score=78.28 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=89.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 007970 365 KAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP 444 (583)
Q Consensus 365 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 444 (583)
..+.+.|++++|.+.|++..+ ..+.+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 345677888899998888877 244568888899999999999999999999998863 34677888888999999999
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHH--HHhhhhHHHHHHHHH
Q 007970 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADI--CVRAAFFRKALEIVA 503 (583)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~--~~~~g~~~~A~~~~~ 503 (583)
++|++.|+++.+. .|+. ..+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~------------------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV------------------KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH------------------STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999998876 3432 444445444 888899999999988
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00015 Score=57.22 Aligned_cols=93 Identities=13% Similarity=-0.005 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDI---VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN---VATYGSLA 435 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~ 435 (583)
.+...+...|++++|...|+.+.+. .+.+. ..+..+..++.+.|++++|...|+++.+.. +.+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 3445566677777777777777652 12222 466667777777788888888777777642 222 45666677
Q ss_pred HHHHhcCCHhHHHHHHHHHHHH
Q 007970 436 NGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 436 ~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.++...|++++|+..|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777788888888888877765
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.05 E-value=7.7e-05 Score=73.72 Aligned_cols=94 Identities=14% Similarity=0.020 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------------- 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------------- 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 5678888999999999999999999998863 446788899999999999999999999999864
Q ss_pred CCCCCCH-HHHHHHHHHHHhhhhHHHHHH-HHHHH
Q 007970 473 PPLKPDE-ELLDALADICVRAAFFRKALE-IVACM 505 (583)
Q Consensus 473 ~~~~p~~-~~~~~l~~~~~~~g~~~~A~~-~~~~~ 505 (583)
.|+. ..+..+..++.+.|+++++.+ .++.|
T Consensus 381 ---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 381 ---NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp ---C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 678888888989999888764 34444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00013 Score=72.16 Aligned_cols=115 Identities=12% Similarity=-0.034 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN---------------VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...|..+...|.+.|++++|+..|++.++.. +.+ ...|..+..+|.+.|++++|+..++++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4566777778888888888888888887642 112 578889999999999999999999999987
Q ss_pred hhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhh
Q 007970 458 CEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRM 528 (583)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 528 (583)
.| +...+..+..+|...|++++|+..|++..+ +.|+.......+..++.+.
T Consensus 347 ------------------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 347 ------------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKA 398 (457)
T ss_dssp ------------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHH
T ss_pred ------------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH
Confidence 44 468899999999999999999999999985 5666553333324444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.99 E-value=6.4e-05 Score=71.81 Aligned_cols=62 Identities=15% Similarity=-0.046 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 428 VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 428 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
..+|..+..+|.+.|++++|+..++++++. .|+ ...+..+..+|.+.|++++|++.+++..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEI------------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHh------------------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345566666666666666666666666643 333 3566666666666666666666666665
Q ss_pred H
Q 007970 507 E 507 (583)
Q Consensus 507 ~ 507 (583)
+
T Consensus 335 ~ 335 (370)
T 1ihg_A 335 E 335 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00012 Score=60.62 Aligned_cols=65 Identities=18% Similarity=0.083 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++.+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 45678888889999999999999999988763 446778888888999999999999999998876
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.98 E-value=6.5e-05 Score=61.92 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
..+|..+...+...|+ +++|+..+++..+......+ ......++..+...+...|++++|...++...+...
T Consensus 9 ~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGN--FRDAVIAHEQRLLIAKEFGD------KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHhCC------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4578888889999998 99999999999886433211 111235888999999999999999999999765311
Q ss_pred C-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHh----CCC-cchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 007970 90 K-PD----VLTYNVMIKLCARASRKHLLVFVLERILEM----GIT-LCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 90 ~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 156 (583)
. .+ ..++..+...+...|++++|.+.+++..+. +.+ .....+..+..++...|++++|.+.+++..+
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 0 11 446777888899999999999999887754 111 1245677888999999999999999988765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00015 Score=58.60 Aligned_cols=111 Identities=19% Similarity=0.021 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhh
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN--------V-----ATYGSLANGISLARKPGEALLLWKEIKERCEV 460 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~--------~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 460 (583)
..+......+.+.|++++|++.|++.++. .|+ . ..|..+..++.+.|++++|+..+++.++.+..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34555666777888888888888888764 333 2 38888899999999999999999999875211
Q ss_pred hhccccCCCCCCCCCCCCH-HHH----HHHHHHHHhhhhHHHHHHHHHHHHH-----cCCCCCHHHH
Q 007970 461 KKEGVNADSDLPPPLKPDE-ELL----DALADICVRAAFFRKALEIVACMEE-----HGIPPNKTKY 517 (583)
Q Consensus 461 ~~~~~~~~~~~~~~~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 517 (583)
.. .+.|+. ..| .....++...|++++|+..|++..+ .++.+.....
T Consensus 90 ~~-----------e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 90 RG-----------ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp HC-----------CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cc-----------cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 00 237765 778 8899999999999999999999964 4455544433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00016 Score=69.14 Aligned_cols=139 Identities=11% Similarity=-0.000 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG 402 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 402 (583)
..+..+...+.+.|++++|+..|++..+. .+.. ..... .....+ ..+.+..+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~-------~~~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAE-------DADGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSC-------HHHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccC-------hHHHHH--HHHHHHHHHHHHHHH
Confidence 44666666677777777777777766542 0000 00001 111111 112345778888999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHH
Q 007970 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EEL 481 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~ 481 (583)
|.+.|++++|++.+++.++.. +.+...+..+..+|...|++++|+..|+++.+. .|+ ...
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l------------------~P~~~~~ 343 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI------------------APEDKAI 343 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCCHHH
Confidence 999999999999999999753 346778888999999999999999999999876 554 567
Q ss_pred HHHHHHHHHhhhhHHHHHHH
Q 007970 482 LDALADICVRAAFFRKALEI 501 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~ 501 (583)
+..+..++...++.+++.+.
T Consensus 344 ~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 344 QAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888777653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.5e-05 Score=60.68 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=73.6
Q ss_pred hcCCcchHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHH
Q 007970 70 NLGKPKKFLQLFDQMHEFGA--KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIA 147 (583)
Q Consensus 70 ~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 147 (583)
..|++++|+..|++..+.+. ..+...+..+..++...|++++|+..|++..+.. +.+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999998641 1245678888999999999999999999999986 56788899999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 007970 148 ETIVQAMREGRRDVC 162 (583)
Q Consensus 148 ~~~~~~~~~~~~~~~ 162 (583)
...++......|+..
T Consensus 81 ~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 81 VELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHhCCCcH
Confidence 999998887655433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=80.44 Aligned_cols=125 Identities=10% Similarity=-0.043 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 007970 13 WSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD 92 (583)
Q Consensus 13 ~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 92 (583)
|..+...+.+.|+ +++|+..|++..+. .+.+..+|..+..+|.+.|++++|++.+++..+... .+
T Consensus 9 ~~~lg~~~~~~g~--~~~A~~~~~~Al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~ 73 (477)
T 1wao_1 9 LKTQANDYFKAKD--YENAIKFYSQAIEL------------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KY 73 (477)
T ss_dssp SSSSSSSTTTTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TC
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHHh------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CC
Confidence 3344455667777 99999999999885 445689999999999999999999999999998753 36
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH--HHcCCChHHHHHHHHH
Q 007970 93 VLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA--YVGFGDLEIAETIVQA 153 (583)
Q Consensus 93 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 153 (583)
..+|..+..++...|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|.+.+++
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7788889999999999999999999999875 4455566655555 7777888888877664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.1e-05 Score=60.15 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=58.6
Q ss_pred cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 305 (583)
.|++++|+..|++..+... ..+.+...+..+..++...|++++|+..++++.+.. +.+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 5677778888887776410 012234567777777777888888888888777664 44567777777777788888888
Q ss_pred HHHHHHHHhcC
Q 007970 306 KELLREMADDA 316 (583)
Q Consensus 306 ~~~~~~~~~~~ 316 (583)
+..+++.+...
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88777776543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00032 Score=69.19 Aligned_cols=132 Identities=14% Similarity=-0.006 Sum_probs=97.4
Q ss_pred HHHhcCCHHHHHHHHHHHhcCC--CCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHH
Q 007970 366 AFALSSQPKLANKVFDEMLRDP--RVK---V-DIVAWNMLVEGYCRMGLVEEAKRIIERMKE-----NG-FYPN-VATYG 432 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~--~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~g-~~p~-~~~~~ 432 (583)
.+...|++++|+.++++..+.. -+. | ...+++.|..+|...|++++|+.++++.++ .| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456788999988887765411 111 2 246789999999999999999999998764 22 1233 34788
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 433 SLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 433 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|...|...|++++|..+++++.+..... .| .-.|+. .+...+..++...|++++|+.+++.+++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~-lG---------~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVT-HG---------PSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TC---------TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH-hC---------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764321 00 113444 5566677788899999999999999976
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00026 Score=57.19 Aligned_cols=102 Identities=11% Similarity=-0.061 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHh----
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKP------D-----VLTYNVMIKLCARASRKHLLVFVLERILEM---- 122 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 122 (583)
...+......+.+.|++++|+..|+...+..... + ...|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4567778888899999999999999998864331 2 238889999999999999999999999987
Q ss_pred ---CCCcchhHH----HHHHHHHHcCCChHHHHHHHHHHHhhhHH
Q 007970 123 ---GITLCMTTF----QSLVAAYVGFGDLEIAETIVQAMREGRRD 160 (583)
Q Consensus 123 ---~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 160 (583)
. +.+...| .....++...|++++|+..|+...+..|+
T Consensus 91 ~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 91 GELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5 4466788 88999999999999999999999876543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00082 Score=51.61 Aligned_cols=80 Identities=10% Similarity=0.055 Sum_probs=63.4
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
.|...|++..+ ..+.+...+..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|+..|+++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677777766 345567888888888889999999999999888753 345678888888888899999999999888
Q ss_pred HHH
Q 007970 455 KER 457 (583)
Q Consensus 455 ~~~ 457 (583)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 775
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00022 Score=70.32 Aligned_cols=147 Identities=10% Similarity=-0.019 Sum_probs=107.4
Q ss_pred CCCCchHHHHHHHH----------HHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCc
Q 007970 5 GYLPHVKAWSTVVS----------RLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKP 74 (583)
Q Consensus 5 g~~p~~~~~~~li~----------~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 74 (583)
+..|+..++..++. .+...|+ +++|+.++++.++...+... ...+....+++.|..+|...|++
T Consensus 294 ~~~~s~e~v~~~l~~a~~~le~a~~~~~qg~--~~eA~~l~~~aL~~~~~~lg----~~Hp~~a~~~~nLa~~y~~~g~~ 367 (490)
T 3n71_A 294 DPKPSQEVVKEMIQFSKDTLEKIDKARSEGL--YHEVVKLCRECLEKQEPVFA----DTNLYVLRLLSIASEVLSYLQAY 367 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHTTTBC----TTSHHHHHHHHHHHHHHHHTTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHhcCH
Confidence 33456655554432 3556777 99999999999886443211 12233467999999999999999
Q ss_pred chHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHh-----C--CCcchhHHHHHHHHHHc
Q 007970 75 KKFLQLFDQMHEF-----GA-KPD-VLTYNVMIKLCARASRKHLLVFVLERILEM-----G--ITLCMTTFQSLVAAYVG 140 (583)
Q Consensus 75 ~~A~~~~~~m~~~-----~~-~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~ 140 (583)
++|..++++.... |. .|+ ..+++.|...|...|++++|..++++..+. | .+....+...+..++..
T Consensus 368 ~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 368 EEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999987653 32 133 456889999999999999999999887742 3 22234456677788888
Q ss_pred CCChHHHHHHHHHHHhh
Q 007970 141 FGDLEIAETIVQAMREG 157 (583)
Q Consensus 141 ~g~~~~A~~~~~~~~~~ 157 (583)
.+.+++|+.++..+.+.
T Consensus 448 ~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 448 LRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00015 Score=58.48 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=75.9
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------hHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKP----------GEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
.+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|+++++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---------------- 75 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------------- 75 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh----------------
Confidence 45567888888888887753 44677777777777777654 5999999999986
Q ss_pred CCCCCH-HHHHHHHHHHHhhh-----------hHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 474 PLKPDE-ELLDALADICVRAA-----------FFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 474 ~~~p~~-~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
.|+. ..|..+..+|...| ++++|++.|++..+ +.|+...|...
T Consensus 76 --dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~a 130 (158)
T 1zu2_A 76 --DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKS 130 (158)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred --CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 7764 89999999998875 89999999999986 67887777554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.76 E-value=8.6e-05 Score=70.10 Aligned_cols=131 Identities=7% Similarity=-0.074 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHH------------------HHHHHHHHHHhc
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTA------------------AYNAVLNACANL 71 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~li~~~~~~ 71 (583)
...|..+...+.+.|+ +++|+..|++.++. .|+.. .|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~--~~~A~~~y~~Al~~-------------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEK--LEEAMQQYEMAIAY-------------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSC--CHHHHHHHHHHHHH-------------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHH-------------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4467777788888888 99999999998874 33322 566666666666
Q ss_pred CCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHH-HHcCCChHHHHHH
Q 007970 72 GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAA-YVGFGDLEIAETI 150 (583)
Q Consensus 72 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~ 150 (583)
|++++|+..++...+... .+...|..+..+|...|++++|...|++..+.. +.+...+..+..+ ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665432 245566666666666666666666666665543 2233344444433 2223444555555
Q ss_pred HHHHHhh
Q 007970 151 VQAMREG 157 (583)
Q Consensus 151 ~~~~~~~ 157 (583)
|..+...
T Consensus 322 ~~~~l~~ 328 (338)
T 2if4_A 322 YKGIFKG 328 (338)
T ss_dssp -------
T ss_pred HHHhhCC
Confidence 5555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.73 E-value=9.2e-05 Score=56.52 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 427 NVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
+...+..+...+...|++++|+..|+++.+. .| +...+..+..++.+.|++++|++.+++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA------------------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4567778888888999999999999998876 44 4578888888999999999999999998
Q ss_pred HHcCCCCCH
Q 007970 506 EEHGIPPNK 514 (583)
Q Consensus 506 ~~~~~~p~~ 514 (583)
.+ +.|+.
T Consensus 65 l~--~~p~~ 71 (111)
T 2l6j_A 65 LR--YTSTA 71 (111)
T ss_dssp HT--SCSST
T ss_pred HH--hCCCc
Confidence 75 45553
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.71 E-value=9.8e-05 Score=69.69 Aligned_cols=148 Identities=9% Similarity=-0.028 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 286 RITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 286 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
...+..+...+.+.|++++|...|++.+.. .|+... +...++..++...+. ...+..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 344555566666677777777777776543 233221 122223333322211 136777888
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCC
Q 007970 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPN-VATYGSLANG-ISLARK 443 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~-~~~~g~ 443 (583)
++.+.|++++|...+++..+ ..+.+...|..+..+|...|++++|+..|++..+. .|+ ...+..+... ....+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 88889999999999988877 34557788888889999999999999999888754 343 3344444444 234556
Q ss_pred HhHHHHHHHHHHHH
Q 007970 444 PGEALLLWKEIKER 457 (583)
Q Consensus 444 ~~~a~~~~~~~~~~ 457 (583)
.+++...|+++...
T Consensus 315 ~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 315 YQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHHhhCC
Confidence 77777888877654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.70 E-value=3.2e-05 Score=59.22 Aligned_cols=93 Identities=12% Similarity=0.012 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCC
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 471 (583)
+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..++...|++++|+..++++.+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------------- 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------------
Confidence 34566777778888888888888888887652 346677777888888888888888888888754
Q ss_pred CCCCCCC-------HHHHHHHHHHHHhhhhHHHHHHHHH
Q 007970 472 PPPLKPD-------EELLDALADICVRAAFFRKALEIVA 503 (583)
Q Consensus 472 ~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 503 (583)
.|+ ...+..+..++...|++++|...++
T Consensus 68 ----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 68 ----TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp ----CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 454 3444555555666665555544333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0035 Score=63.41 Aligned_cols=172 Identities=6% Similarity=-0.026 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-
Q 007970 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQ----------IDKAKELLREMADDAKIEPDVVSYNILIDGFILID- 336 (583)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~- 336 (583)
++|++.++.+.... +-+..+|+.--.++...++ ++++++.++.+++.. +.+..+|..-...+.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccc
Confidence 45556666555543 3344455544444444444 677777777776543 456667777766777777
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc--------
Q 007970 337 -DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS-QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM-------- 406 (583)
Q Consensus 337 -~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 406 (583)
+++++++.++++.+.. +-+...|+.-...+.+.| .++++.+.++++.+ ..+.+...|+....++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhcccccccc
Confidence 5678888888877764 335666666666666777 77888888888776 3456777777777666653
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH
Q 007970 407 ------GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE 446 (583)
Q Consensus 407 ------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 446 (583)
+.++++++.++++.... +-|...|..+-..+.+.+++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999998753 3467788888877877777544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0055 Score=61.94 Aligned_cols=172 Identities=7% Similarity=-0.008 Sum_probs=115.6
Q ss_pred CCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcC
Q 007970 72 GKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASR----------KHLLVFVLERILEMGITLCMTTFQSLVAAYVGF 141 (583)
Q Consensus 72 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (583)
...++|++.++.+...+. -+..+|+.--.++...++ ++++++.++.+.+.. +-+..+|+.-.-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344677899999888654 245667766666666666 788888888888875 55777888777777788
Q ss_pred C--ChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 007970 142 G--DLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTL 219 (583)
Q Consensus 142 g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 219 (583)
+ +++++++.++.+.+.+ +.+..+|+.-
T Consensus 121 ~~~~~~~el~~~~k~l~~d---------------------------------------------------~~N~~aW~~R 149 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD---------------------------------------------------ERNFHCWDYR 149 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC---------------------------------------------------TTCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhc---------------------------------------------------cccccHHHHH
Confidence 8 5688888888887642 4667778777
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHhCCCCC
Q 007970 220 MKGYMNEG-RVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKA--------------GSMDRARQVLAEMTRIGVPA 284 (583)
Q Consensus 220 i~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~ 284 (583)
..++.+.| .++++++.++++.+. .+-+...|+.....+.+. +.++++++.+..+.... |-
T Consensus 150 ~~~l~~l~~~~~~el~~~~~~I~~----~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~ 224 (567)
T 1dce_A 150 RFVAAQAAVAPAEELAFTDSLITR----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PN 224 (567)
T ss_dssp HHHHHHTCCCHHHHHHHHHTTTTT----TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SS
T ss_pred HHHHHHcCCChHHHHHHHHHHHHH----CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CC
Confidence 77777777 788888888887765 445677777776666553 23455555555555443 33
Q ss_pred CHHHHHHHHHHHHhcCC
Q 007970 285 NRITYNILLKGYCQQLQ 301 (583)
Q Consensus 285 ~~~~~~~l~~~~~~~~~ 301 (583)
+...|..+-..+.+.++
T Consensus 225 ~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 225 DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSHHHHHHHHHHSCCCC
T ss_pred CccHHHHHHHHHhcCCC
Confidence 44555544444444443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.59 E-value=7.4e-07 Score=83.80 Aligned_cols=265 Identities=12% Similarity=0.085 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 007970 10 VKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGA 89 (583)
Q Consensus 10 ~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 89 (583)
...|+.+..+.-..++ ..+|+..|-+. .|+..|..+|.+..+.|.+++-++.+...++..-
T Consensus 54 p~VWs~LgkAqL~~~~--v~eAIdsyIkA-----------------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k 114 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGM--VKEAIDSYIKA-----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR 114 (624)
T ss_dssp CCCSSSHHHHTTTSSS--CTTTTTSSCCC-----------------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC
T ss_pred ccHHHHHHHHHHccCc--hHHHHHHHHhC-----------------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 3457777777776666 77776654221 2555688888888899999999988888776543
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhh
Q 007970 90 KPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELD 169 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 169 (583)
+| ..=+.|+-+|++.++..+..+++ ..||..-...+..-|...|.++.|.-+|..+.. +.
T Consensus 115 e~--~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----------~a 174 (624)
T 3lvg_A 115 ES--YVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----------FG 174 (624)
T ss_dssp ST--TTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----------CT
T ss_pred cc--ccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----------HH
Confidence 33 33457888899888876654433 246777777788888888998888888776644 45
Q ss_pred hccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCC
Q 007970 170 LEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP 249 (583)
Q Consensus 170 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 249 (583)
..+.++...|++..|.+.-.+ ..++.||-.+-.+|...+.+.-|.-.--.+.-. +
T Consensus 175 kLAstLV~L~~yq~AVdaArK-------------------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh------a 229 (624)
T 3lvg_A 175 RLASTLVHLGEYQAAVDGARK-------------------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH------A 229 (624)
T ss_dssp TTSSSSSSCSGGGSSTTTTTT-------------------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC------S
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------------------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc------H
Confidence 556677777777777665544 356778888888998888887765544443321 2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------CHH
Q 007970 250 DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEP------DVV 323 (583)
Q Consensus 250 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~ 323 (583)
| ....++..|-..|-+++.+.+++.-.... .....+|+-|.-.|++- +.++..+.++....+-+++. ...
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1 12335666777788888888887766432 45667777777777654 45555555544322222221 123
Q ss_pred HHHHHHHHHHhcCCHHHHH
Q 007970 324 SYNILIDGFILIDDSAGAL 342 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~ 342 (583)
.|.-++-.|..-.+++.|.
T Consensus 306 LW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHhcchhHHHHH
Confidence 4666666666666666554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00038 Score=53.58 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007970 231 DTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLR 310 (583)
Q Consensus 231 ~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 310 (583)
+|++.|+...+. .+.+...+..+...+...|++++|...++...+.. +.+...+..+..+|...|++++|...|+
T Consensus 3 ~a~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQ----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTT----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666666654 33456677777777777777777777777777654 4456667777777777777777777777
Q ss_pred HHHh
Q 007970 311 EMAD 314 (583)
Q Consensus 311 ~~~~ 314 (583)
+...
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00097 Score=49.71 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 390 KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+.+...+..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|...|++++|++.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4467778888888888999999999998888753 335667888888888899999999888888765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00091 Score=48.54 Aligned_cols=64 Identities=22% Similarity=0.231 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 393 IVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 393 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|+..++++.+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4566777777888888888888888877652 335667777788888888888888888888765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0052 Score=48.94 Aligned_cols=110 Identities=7% Similarity=-0.065 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 007970 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEE 411 (583)
Q Consensus 336 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 411 (583)
+++++|+..|++..+.| .|... +...|...+..++|..+|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 34566666666666665 22222 444555555666677777666552 355566666666666 567777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHHH
Q 007970 412 AKRIIERMKENGFYPNVATYGSLANGISL----ARKPGEALLLWKEIKER 457 (583)
Q Consensus 412 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 457 (583)
|.++|++..+.| +...+..|...|.. .+++++|+.+|++..+.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 777777776654 45566666666666 66777777777766654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0044 Score=49.38 Aligned_cols=112 Identities=9% Similarity=-0.124 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHhH
Q 007970 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----ARKPGE 446 (583)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~ 446 (583)
+++++|..+|++..+. + .+... |...|...+..++|.++|++..+.| +...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4678999999998874 3 33333 7777888888999999999999875 67788888888887 889999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHcCC
Q 007970 447 ALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR----AAFFRKALEIVACMEEHGI 510 (583)
Q Consensus 447 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 510 (583)
|+.+|++..+. -+...+..|...|.. .+++++|.+++++..+.|.
T Consensus 80 A~~~~~~Aa~~-------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGL-------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHT-------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcC-------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999863 356778888889988 8999999999999988663
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00049 Score=55.41 Aligned_cols=98 Identities=8% Similarity=-0.038 Sum_probs=70.1
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL----------VEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+.+.+++|.+.++...+ --+.+...|..+..++...++ +++|+..|++.++.. +-+...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 44556677777777665 234566666666666666655 458888888888752 23567888888888
Q ss_pred Hhc-----------CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHH
Q 007970 439 SLA-----------RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALAD 487 (583)
Q Consensus 439 ~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~ 487 (583)
... |++++|++.|+++++. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l------------------~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE------------------QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH------------------CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh------------------CCCCHHHHHHHH
Confidence 776 4899999999999986 888766655444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0018 Score=46.88 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNIL 292 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 292 (583)
...+..+...+...|++++|++.|++.... .+.+...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 456666777777777777777777777664 23345666666677777777777777777766543 3344555555
Q ss_pred HHHHH
Q 007970 293 LKGYC 297 (583)
Q Consensus 293 ~~~~~ 297 (583)
..++.
T Consensus 84 ~~~~~ 88 (91)
T 1na3_A 84 GNAKQ 88 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=49.30 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMT 278 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 278 (583)
+.+..++..+..+|...|++++|++.|++..+. .+.+...|..+..++...|++++|.+.++...
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET----DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334555555555555555555555555555553 22234445555555555555555555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0031 Score=46.66 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=62.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HH-HHHHHHHHHHhhhhHHHHHHHHHHHHHcCCC
Q 007970 434 LANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EE-LLDALADICVRAAFFRKALEIVACMEEHGIP 511 (583)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 511 (583)
....+...|++++|+..++++.+. .|+ .. .+..+..+|...|++++|.+.+++..+. .
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT------------------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--N 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH------------------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH------------------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 455678899999999999999986 555 46 8889999999999999999999999863 4
Q ss_pred CCHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhcC
Q 007970 512 PNKTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKFWLGL 558 (583)
Q Consensus 512 p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 558 (583)
|+....... +.++++...+++.
T Consensus 66 p~~~~~~~~-------------------------~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 66 PDSPALQAR-------------------------KMVMDILNFYNKD 87 (99)
T ss_dssp TTSTHHHHH-------------------------HHHHHHHHHHCCT
T ss_pred CCcHHHHHH-------------------------HHHHHHHHHHHHH
Confidence 554322111 5777888888776
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.048 Score=50.68 Aligned_cols=68 Identities=10% Similarity=-0.018 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 388 RVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 388 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..+.+..+|..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.++++...
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 346678888888777777899999999999999874 78888888888889999999999999999876
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0075 Score=58.40 Aligned_cols=93 Identities=10% Similarity=-0.087 Sum_probs=72.1
Q ss_pred HcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC
Q 007970 405 RMGLVEEAKRIIERMKEN---GFYPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477 (583)
Q Consensus 405 ~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (583)
..|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++++..... -| .-.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~-lG---------~~Hp 379 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKH-YP---------VYSL 379 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-SC---------SSCH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH-cC---------CCCh
Confidence 357899999999887642 12232 3578899999999999999999999988764321 00 2255
Q ss_pred CH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 478 DE-ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 478 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+. .+++.|..+|...|++++|+.++++..+
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 65 7899999999999999999999999853
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.057 Score=57.64 Aligned_cols=84 Identities=11% Similarity=0.127 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 211 PNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
.+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++-+.....|. ++
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~ 740 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FN 740 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hH
Confidence 3556777788888888888888887776643 33445555556666665555544444431 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
....+|.+.|++++|++++.++
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHc
Confidence 3333445555555555555433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.029 Score=52.07 Aligned_cols=74 Identities=11% Similarity=-0.044 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007970 425 YPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVAC 504 (583)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 504 (583)
+.+..++..+...+...|++++|+..++++... .|+...|..+..++.-.|++++|.+.+++
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L------------------n~s~~a~~llG~~~~~~G~~~eA~e~~~~ 335 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL------------------EMSWLNYVLLGKVYEMKGMNREAADAYLT 335 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 567888888887788889999999999999987 68888888888999999999999999999
Q ss_pred HHHcCCCCCHHHHH
Q 007970 505 MEEHGIPPNKTKYK 518 (583)
Q Consensus 505 ~~~~~~~p~~~~~~ 518 (583)
... +.|...+|.
T Consensus 336 Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 336 AFN--LRPGANTLY 347 (372)
T ss_dssp HHH--HSCSHHHHH
T ss_pred HHh--cCCCcChHH
Confidence 876 567777764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.019 Score=55.68 Aligned_cols=111 Identities=9% Similarity=0.023 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 400 VEGYCRMGLVEEAKRIIERMKENG---FYPN----VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~~g---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|+.+++++++..... .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~-l--------- 363 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIF-F--------- 363 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-S---------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHH-c---------
Confidence 445667899999999999987531 2232 3578889999999999999999999988764321 0
Q ss_pred CCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH---cCCCCCHHHHHHH
Q 007970 473 PPLKPDE-ELLDALADICVRAAFFRKALEIVACMEE---HGIPPNKTKYKKI 520 (583)
Q Consensus 473 ~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~~ 520 (583)
+.-.|+. .+++.|...|...|++++|+.++++..+ .-+-|+......+
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 0225555 7888999999999999999999999853 2233554444333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.014 Score=42.84 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=41.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVA-TYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
....+.+.|++++|++.++++.+.. +.+.. .+..+..++...|++++|++.|+++.+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455667778888888888777652 33455 6777777777888888888888887765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.017 Score=41.99 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHH
Q 007970 425 YPNVATYGSLANGISLARK---PGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALE 500 (583)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 500 (583)
+.++..+..+..++...++ .++|..+++++.+. .|+. .....+...+.+.|++++|..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------------------dp~~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL------------------EPYNEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------------------CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4567778888888765554 68999999999987 6654 788888889999999999999
Q ss_pred HHHHHHHc
Q 007970 501 IVACMEEH 508 (583)
Q Consensus 501 ~~~~~~~~ 508 (583)
.|+++.+.
T Consensus 65 ~w~~~l~~ 72 (93)
T 3bee_A 65 TWVLLLDS 72 (93)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99999863
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.032 Score=44.38 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC--CHHHHH
Q 007970 409 VEEAKRIIERMKENGFYPNVATYGSLANGISLAR---KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP--DEELLD 483 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~ 483 (583)
...+.+-|.+..+.| .++..+.-.+..++.+.+ +.++++.+++...+.. .| ....+.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----------------~p~~~rd~lY 75 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----------------SKEEQRDYVF 75 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----------------CccchHHHHH
Confidence 455666677666665 378888888888999988 6669999999988861 25 346777
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 484 ALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 484 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
.|.-+|.+.|++++|.+.++.+.+ +.|+..--.
T Consensus 76 ~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~n~QA~ 108 (152)
T 1pc2_A 76 YLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHH
Confidence 788899999999999999999986 567654333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.013 Score=56.79 Aligned_cols=63 Identities=6% Similarity=-0.052 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007970 287 ITYNILLKGYCQQLQIDKAKELLREMADD-----AKIEPDV-VSYNILIDGFILIDDSAGALTFFNEMR 349 (583)
Q Consensus 287 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 349 (583)
.+++.|..+|...|++++|+.++++.+.. ....|++ .+++.|...|...|++++|+.++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34444555555555555555554444321 1112222 345555555555555555555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.034 Score=53.90 Aligned_cols=95 Identities=6% Similarity=-0.068 Sum_probs=65.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhCC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCCCH-
Q 007970 256 TVVSALVKAGSMDRARQVLAEMTRIG---VPA----NRITYNILLKGYCQQLQIDKAKELLREMADD-----AKIEPDV- 322 (583)
Q Consensus 256 ~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~- 322 (583)
..+..+.+.|++++|+.++++.++.. +.+ ...+++.+..+|...|++++|+.++++++.. ....|+.
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 33555667788888888888877531 112 2456777888888888888888888766541 2223433
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007970 323 VSYNILIDGFILIDDSAGALTFFNEMRA 350 (583)
Q Consensus 323 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 350 (583)
.+++.|...|...|++++|+.++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4678888888888888888888887654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.20 E-value=1.6 Score=46.05 Aligned_cols=221 Identities=12% Similarity=0.046 Sum_probs=106.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcccCCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHhCCC--C-----CCHHHHHH
Q 007970 221 KGYMNEGRVSDTVRMLGAMRRQEDNASHPDHV--TYTTVVSALVKAGSMDRARQVLAEMTRIGV--P-----ANRITYNI 291 (583)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~-----~~~~~~~~ 291 (583)
-+....|+.++++.++....... ...+.. .=..+.-+....|..+.+..++...+...- . +....-.+
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~---~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAa 458 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGS---RASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGAS 458 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTS---CCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhcccc---CCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHH
Confidence 34556777777777766554310 012222 222233334455555567776666554321 0 11111122
Q ss_pred H--HHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 292 L--LKGYCQQLQIDKAKELLREMADDAKIEPDVVS--YN--ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMK 365 (583)
Q Consensus 292 l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 365 (583)
+ ..+|.-.++ +++.+.+..++.. .+... .. .|...+...|+.+....++..+.... +......+.-
T Consensus 459 LGLGla~~GS~~-eev~e~L~~~L~d----d~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aal 530 (963)
T 4ady_A 459 LGIGLAAMGSAN-IEVYEALKEVLYN----DSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAV 530 (963)
T ss_dssp HHHHHHSTTCCC-HHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHH
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHhc----CCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHH
Confidence 2 222222333 3455555555442 12211 12 22333456677777777777666531 3333333333
Q ss_pred --HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 366 --AFALSSQPKLANKVFDEMLRDPRVKVDIVAW--NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441 (583)
Q Consensus 366 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 441 (583)
++...|+.+.+..+.+.+... ..|....- .++.-+|+-.|+.....+++..+.+. ...+......+.-++...
T Consensus 531 gLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~ 607 (963)
T 4ady_A 531 GLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLL 607 (963)
T ss_dssp HHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTS
T ss_pred HHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhcc
Confidence 344668888888887777652 12222211 23344566778877777788887764 222232222233334446
Q ss_pred CCHhHHHHHHHHHH
Q 007970 442 RKPGEALLLWKEIK 455 (583)
Q Consensus 442 g~~~~a~~~~~~~~ 455 (583)
|+.+.+.+++..+.
T Consensus 608 g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 608 RDYTTVPRIVQLLS 621 (963)
T ss_dssp SSCSSHHHHTTTGG
T ss_pred CCHHHHHHHHHHHH
Confidence 66665555554443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.094 Score=38.95 Aligned_cols=68 Identities=6% Similarity=-0.048 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC
Q 007970 56 PDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG------AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG 123 (583)
Q Consensus 56 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 123 (583)
.++.-+..|...+.+.|++..|..+|+...+.- -.+....+..+..++.+.|+++.|+..++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 356667788999999999999999999887641 12356678888888999999999999999888864
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.22 Score=36.03 Aligned_cols=44 Identities=11% Similarity=0.221 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREM 312 (583)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 312 (583)
++|..++++.++.. +.+......+...+.+.|++++|...|+.+
T Consensus 26 ~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 26 DEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444333332 223333333333334444444444444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.15 Score=37.83 Aligned_cols=66 Identities=15% Similarity=-0.016 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENG------FYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+..-+..+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|++++|+..++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44555667777777888888888877766420 1234567777888888888888888888888765
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.65 Score=37.89 Aligned_cols=101 Identities=14% Similarity=0.174 Sum_probs=73.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 007970 332 FILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEE 411 (583)
Q Consensus 332 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 411 (583)
....|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|.-.|+.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHH
Confidence 35678888888887665 3677888888888888888888888888753 4556666777888877
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 007970 412 AKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEI 454 (583)
Q Consensus 412 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 454 (583)
-.++-+.....| -++.....+...|++++++++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 776666665554 2444455566788888888887654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.45 Score=50.61 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 007970 255 TTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFIL 334 (583)
Q Consensus 255 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 334 (583)
..++..+.+.|.++.|.++.+.-. .-.......|+++.|.++.+.+ .+...|..+...+.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE-------SAEMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHH
Confidence 555555666666666665442110 1122344566666666664333 345666666666666
Q ss_pred cCCHHHHHHHHHHH
Q 007970 335 IDDSAGALTFFNEM 348 (583)
Q Consensus 335 ~~~~~~a~~~~~~m 348 (583)
.++++.|.+.|..+
T Consensus 694 ~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 694 RFNFKLAIEAFTNA 707 (814)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHc
Confidence 67777666666654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.7 Score=37.70 Aligned_cols=102 Identities=15% Similarity=0.197 Sum_probs=57.6
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 260 ALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSA 339 (583)
Q Consensus 260 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 339 (583)
.....|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+.. | +..+.-.|...|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHHHhCCHH
Confidence 344567777777666554 245667777777777777777777776652 1 333333444556665
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 340 GALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383 (583)
Q Consensus 340 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 383 (583)
+...+-+.....| -++.....+...|+++++.++|.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5555444444433 1344444455566666666666544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.22 Score=39.55 Aligned_cols=66 Identities=14% Similarity=-0.000 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 391 VDIVAWNMLVEGYCRMG---LVEEAKRIIERMKENGFYP--NVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 391 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45555556666666655 4446666666665542 23 2333444455566666666666666666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.33 Score=43.19 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--
Q 007970 409 VEEAKRIIERMKENGFYPN---VATYGSLANGISLA-----RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-- 478 (583)
Q Consensus 409 ~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-- 478 (583)
...|...+++.++. .|+ ...|..+...|.+. |+.++|.++|+++++. .|+
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L------------------nP~~~ 238 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY------------------CSAHD 238 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH------------------CCTTC
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh------------------CCCCC
Confidence 56778888888874 566 55788888888884 9999999999999986 673
Q ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHcCCC--CCHHHH
Q 007970 479 EELLDALADICVR-AAFFRKALEIVACMEEHGIP--PNKTKY 517 (583)
Q Consensus 479 ~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~--p~~~~~ 517 (583)
..++....+.+++ .|+.+++.+.+++.+..... |+....
T Consensus 239 id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~la 280 (301)
T 3u64_A 239 PDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLL 280 (301)
T ss_dssp SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHH
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHH
Confidence 5777788888877 49999999999999986655 554433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.23 Score=44.23 Aligned_cols=125 Identities=14% Similarity=0.053 Sum_probs=86.3
Q ss_pred chHHHHHHHH-HHHhc--CC----CChhhhHHhHHHHHHHHhhcCCccccccCCcC---HHHHHHHHHHHHh-----cCC
Q 007970 9 HVKAWSTVVS-RLAAS--GD----DGPVESVKLFDVVVKRVRKFSDPDIVSDSKPD---TAAYNAVLNACAN-----LGK 73 (583)
Q Consensus 9 ~~~~~~~li~-~~~~~--g~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~ 73 (583)
....|..++. .+... |. .....|..++++.++ +.|+ -..|..+...|.+ .|+
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle-------------LDP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD-------------LWPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH-------------HCTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH-------------hCCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 3456777764 33433 22 112455666666666 3565 6689999999999 499
Q ss_pred cchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHhCCC--cchhHHHHHHHHHHcCCChHHHHHH
Q 007970 74 PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARA-SRKHLLVFVLERILEMGIT--LCMTTFQSLVAAYVGFGDLEIAETI 150 (583)
Q Consensus 74 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 150 (583)
.++|.+.|++..+.+..-+..++......++.. |+.+.+.+.+++....... |+....+.+. -++|..+
T Consensus 220 ~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~--------q~eA~~L 291 (301)
T 3u64_A 220 MEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILS--------QKRARWL 291 (301)
T ss_dssp HHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH--------HHHHHHH
Confidence 999999999999976433477777888888885 9999999999999997655 5544444332 2455555
Q ss_pred HHHH
Q 007970 151 VQAM 154 (583)
Q Consensus 151 ~~~~ 154 (583)
+.++
T Consensus 292 L~~~ 295 (301)
T 3u64_A 292 KAHV 295 (301)
T ss_dssp HHTH
T ss_pred HHHh
Confidence 5444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.25 Score=37.66 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhH---HHHHHHHHHHHhhhhhccccCCCCCCCCCCC--CHHH
Q 007970 407 GLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGE---ALLLWKEIKERCEVKKEGVNADSDLPPPLKP--DEEL 481 (583)
Q Consensus 407 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~ 481 (583)
.....+.+-|.+....|. |+..+--.+..++.+...... ++.+++.+.+.. .| ....
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-----------------~p~~~Rd~ 76 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-----------------SKEEQRDY 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-----------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----------------CcchHHHH
Confidence 344555666666655443 777777778888888877666 788888776541 24 2356
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 482 LDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 482 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
...|.-++.+.|++++|.+.++.+.+ +.|+..-.
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~n~QA 110 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHH
Confidence 66777888999999999999999886 45655433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.48 E-value=1.2 Score=34.10 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGV 282 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 282 (583)
..+...++.+...|+-+.-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n----~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN----NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc----CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34445556666666666666666664332 456666666666777777777777777776666664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.05 E-value=1.5 Score=33.57 Aligned_cols=140 Identities=11% Similarity=0.139 Sum_probs=90.4
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
.-.|.+++..++..+.... .+..-+|.+|--....-+-+-..++++.+-+. -|. ...|+....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FDi----------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FDL----------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SCG----------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCc----------HhhhcHHHH
Confidence 3457777888887777764 24555565555555555555555555555332 121 234444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 342 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
...+-.+ ..+...+...+..+...|.-++-.+++..+.. ..+|++...-.+..+|.+.|+..+|.+++.++-+
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4444332 22456667777788888888888888888654 4567788888888888888888888888888888
Q ss_pred CCCC
Q 007970 422 NGFY 425 (583)
Q Consensus 422 ~g~~ 425 (583)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 7754
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.0099 Score=56.56 Aligned_cols=377 Identities=13% Similarity=0.086 Sum_probs=211.1
Q ss_pred chHHHHHHHHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC
Q 007970 9 HVKAWSTVVSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFG 88 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 88 (583)
|+..|..+|.+..+.|. +++-+..+.-..+. ..++.+=+.|+-+|++.+++.+-.+++.
T Consensus 82 Dps~y~eVi~~A~~~~~--~edLv~yL~MaRk~-------------~ke~~IDteLi~ayAk~~rL~elEefl~------ 140 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGN--WEELVKYLQMARKK-------------ARESYVETELIFALAKTNRLAELEEFIN------ 140 (624)
T ss_dssp CCCSSSHHHHHTTTSSC--CTTHHHHHHTTSTT-------------CCSTTTTHHHHHHHHTSCSSSTTTSTTS------
T ss_pred ChHHHHHHHHHHHhCCC--HHHHHHHHHHHHHH-------------hcccccHHHHHHHHHhhCcHHHHHHHHc------
Confidence 56678899999999998 88877766544331 2233444578899999999877554432
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhC--------------------CCcchhHHHHHHHHHHcCCChHHHH
Q 007970 89 AKPDVLTYNVMIKLCARASRKHLLVFVLERILEMG--------------------ITLCMTTFQSLVAAYVGFGDLEIAE 148 (583)
Q Consensus 89 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~g~~~~A~ 148 (583)
.||..-...+..-|...|.++.|.-+|..+.... -..++.||..+..+|...+++..|.
T Consensus 141 -~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 141 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp -CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred -CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHH
Confidence 2666666777888888888887776665442110 1236789999999999999998876
Q ss_pred HHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 007970 149 TIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGR 228 (583)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 228 (583)
..--.+.-. ...+.-....|...|.+++-+.+++.-+.. -......|+-|.-.|++- +
T Consensus 220 icGLniIvh-------adeL~elv~~YE~~G~f~ELIsLlEaglgl--------------ErAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 220 MCGLHIVVH-------ADELEELINYYQDRGYFEELITMLEAALGL--------------ERAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HHHHHHHCC-------SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS--------------TTCCHHHHHHHHHHHHSS-C
T ss_pred Hhcchhccc-------HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC--------------CchhHHHHHHHHHHHHhc-C
Confidence 553333221 011223345688899999999999987721 145678888888888876 3
Q ss_pred hhHHHHHHHHHHhcccCCCCC-------CHHHHHHHHHHHHHcCChHHHHHHH-------------HHHHhCCCCCCHHH
Q 007970 229 VSDTVRMLGAMRRQEDNASHP-------DHVTYTTVVSALVKAGSMDRARQVL-------------AEMTRIGVPANRIT 288 (583)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~-------------~~~~~~~~~~~~~~ 288 (583)
+++..+.++....+ --.| ....|.-++-.|.+-.++|.|.... .++... -.|...
T Consensus 278 PeKlmEHlklf~sr---iNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~Ei 352 (624)
T 3lvg_A 278 PQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVEL 352 (624)
T ss_dssp TTHHHHHHTTSSSS---SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHH
T ss_pred HHHHHHHHHHHHHh---ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHH
Confidence 55555555444332 1112 2244677777777777777654321 111100 123333
Q ss_pred HHHHHHHH---------------HhcCCHHHHHHHHHHHHhcC---------CCCCCHHHHHHHHHHHHhcCCHHHHHH-
Q 007970 289 YNILLKGY---------------CQQLQIDKAKELLREMADDA---------KIEPDVVSYNILIDGFILIDDSAGALT- 343 (583)
Q Consensus 289 ~~~l~~~~---------------~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~~li~~~~~~~~~~~a~~- 343 (583)
|-..|..| ...=+...+.++|++.-.-. ....+...-.++-..|....|++....
T Consensus 353 yYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~S 432 (624)
T 3lvg_A 353 YYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTS 432 (624)
T ss_dssp HHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33333333 22333334444443221000 001233333444445555555543321
Q ss_pred -----------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007970 344 -----------FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 344 -----------~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (583)
+-+++.++. -...-......|.+.++++++..+.++= + .|.-.|......|+.+-|
T Consensus 433 Id~ydNFD~i~LA~rLEkHe---L~eFRrIAA~LYkkn~rw~qsi~l~KkD----k------lykDAietAa~S~~~ela 499 (624)
T 3lvg_A 433 IDAYDNFDNISLAQRLEKHE---LIEFRRIAAYLFKGNNRWKQSVELCKKD----S------LYKDAMQYASESKDTELA 499 (624)
T ss_dssp TSSCCCSCTTHHHHHHHTCS---SHHHHHHHHHHHHTTCHHHHHSSCSSTT----C------CTTGGGTTTTTCCCTTHH
T ss_pred HHHhccccHHHHHHHHhhCc---hHHHHHHHHHHHHhcccHHHHHHHHHhc----c------cHHHHHHHHHHcCCHHHH
Confidence 222222221 1111122222345555666655543211 1 122234455566777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 007970 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLL 450 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 450 (583)
.++++-..+.| +...|...+..|...=+++-++++
T Consensus 500 eeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 500 EELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 77777777654 455677777777777777777665
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.62 E-value=0.52 Score=35.94 Aligned_cols=87 Identities=16% Similarity=0.105 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHcCCHHHH
Q 007970 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKL---ANKVFDEMLRDPRVK-VDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A 412 (583)
....+.+-|......| .++..+-..+..++.+..+... ++.++..+.+. +.+ ......-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445556666655544 3677777777788888777665 88888888774 211 2344555666788899999999
Q ss_pred HHHHHHHHHCCCCCC
Q 007970 413 KRIIERMKENGFYPN 427 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~ 427 (583)
.+.++.+++. .|+
T Consensus 94 ~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHHh--CCC
Confidence 9999998874 554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.26 E-value=6.3 Score=38.11 Aligned_cols=239 Identities=11% Similarity=0.085 Sum_probs=136.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHH----HHcCChHH--HHHHHHHHHh--CC
Q 007970 210 APNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSAL----VKAGSMDR--ARQVLAEMTR--IG 281 (583)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~~~~--a~~~~~~~~~--~~ 281 (583)
..+......++..|...++++...+.+..+.... |..+ .....++..+ ......+. -..+.+.+.. .|
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr--~qlk--~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~ 128 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH--GQLK--LSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTEN 128 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT--TTSH--HHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh--hhhH--HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhcc
Confidence 4567788899999999999999988887776542 2322 2233444333 23343332 1222221111 11
Q ss_pred -CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---
Q 007970 282 -VPA---NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPD----VVSYNILIDGFILIDDSAGALTFFNEMRA--- 350 (583)
Q Consensus 282 -~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~--- 350 (583)
+-. .......|...|...|++.+|..++..+..+.....+ ...+...+..|...+++.+|..++.++..
T Consensus 129 kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 129 KIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc
Confidence 111 1234467888999999999999999998654322222 24577778889999999999999988642
Q ss_pred -CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHCC
Q 007970 351 -RGIAPT--KISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML----VEGYCRMGLVEEAKRIIERMKENG 423 (583)
Q Consensus 351 -~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~~~~~g 423 (583)
....|+ ...+...+..+...+++.+|...|..+........+...+..+ +.+..-.+....-..++.......
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~ 288 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDN 288 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcc
Confidence 222222 2345666777788899999988888776532222233322221 111122221122222233322222
Q ss_pred CCCCHHHHHHHHHHHHhc--CCHhHHHHHHH
Q 007970 424 FYPNVATYGSLANGISLA--RKPGEALLLWK 452 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~ 452 (583)
..++...+..++.+|... .+++...+.|.
T Consensus 289 ~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 289 NLKKLESQESLVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTC
T ss_pred cccccHHHHHHHHHHHhchHhhhHHHHHHHH
Confidence 234667788888887553 34555544443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.24 E-value=0.84 Score=35.83 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHHH-HHHHHH------HHHhcCCHHHHHHHHHHHhc
Q 007970 319 EPDVVSYNILIDGFILIDDS------AGALTFFNEMRARGIAPTKIS-YTTLMK------AFALSSQPKLANKVFDEMLR 385 (583)
Q Consensus 319 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~-~~~l~~------~~~~~~~~~~a~~~~~~~~~ 385 (583)
+.|..+|-..+....+.|+. ++..++|++.... ++|+... +...+. .+...+++++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34566666666666666777 7777788877765 5554311 111111 12334789999999999876
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007970 386 DPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLAN 436 (583)
Q Consensus 386 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 436 (583)
. +-.- ...|-....--.+.|+.+.|.+++.+.+..+.+| ...+...+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 3 2222 7778788888889999999999999999876544 334444433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.02 E-value=6.9 Score=37.86 Aligned_cols=194 Identities=10% Similarity=0.077 Sum_probs=92.9
Q ss_pred cCChhHHHHHHHHHHhcc--cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc
Q 007970 226 EGRVSDTVRMLGAMRRQE--DNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGY----CQQ 299 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 299 (583)
.+++++|++.+..+.+.. .............++..|...++++...+.+..+.+..-.. ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 377888888777766531 11223345667778888888888888877776655432111 22223333322 222
Q ss_pred CCHHH--HHHHHHHHHh--cCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 007970 300 LQIDK--AKELLREMAD--DAKIEP---DVVSYNILIDGFILIDDSAGALTFFNEMRAR--GIAPT---KISYTTLMKAF 367 (583)
Q Consensus 300 ~~~~~--A~~~~~~~~~--~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~ 367 (583)
...+. -..+.+.+.. ...+-. .......|...+...|++.+|..++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 22221 1111111100 000111 1112344555566666666666666665432 21111 22344455556
Q ss_pred HhcCCHHHHHHHHHHHhcC---CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 007970 368 ALSSQPKLANKVFDEMLRD---PRVKVD--IVAWNMLVEGYCRMGLVEEAKRIIERMK 420 (583)
Q Consensus 368 ~~~~~~~~a~~~~~~~~~~---~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~ 420 (583)
...+++..|..+++++... ...+|+ ...+...+..+...+++.+|-+.|.++.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666666666666654210 011111 1234445555555566666655555543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.77 Score=47.38 Aligned_cols=53 Identities=23% Similarity=0.056 Sum_probs=45.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007970 435 ANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACM 505 (583)
Q Consensus 435 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 505 (583)
..-|...|+++-|+++.+++... .|+ ..+|..|+.+|.+.|+++.|+-.++.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~------------------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL------------------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH------------------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc------------------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34467789999999999998876 555 599999999999999999999999987
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.64 E-value=4 Score=32.05 Aligned_cols=104 Identities=11% Similarity=0.179 Sum_probs=71.8
Q ss_pred chHHHHHHHHHHHhcCCCCh------hhhHHhHHHHHHHHhhcCCccccccCCcCH----HHHHHHHH---HHHhcCCcc
Q 007970 9 HVKAWSTVVSRLAASGDDGP------VESVKLFDVVVKRVRKFSDPDIVSDSKPDT----AAYNAVLN---ACANLGKPK 75 (583)
Q Consensus 9 ~~~~~~~li~~~~~~g~~~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~---~~~~~g~~~ 75 (583)
|..+|-..+.-+-+.|+ . ++.+++|++.... +||+. ..|-.+-- .+...++.+
T Consensus 12 ~yd~W~~yl~llE~~g~--p~~d~~l~rlrd~YerAia~------------~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d 77 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSV--PLSDALLNKLIGRYSQAIEA------------LPPDKYGQNESFARIQVRFAELKAIQEPD 77 (161)
T ss_dssp SHHHHHHHHHHHHHHTC--SCCHHHHHHHHHHHHHHHHH------------SCGGGGTTCHHHHHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHHHcCC--CchhhHHHHHHHHHHHHHHc------------CCccccccHHHHHHHHHHHHHHHHhcCHH
Confidence 56688888888888887 6 7777888887765 55532 11111111 113448899
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcc
Q 007970 76 KFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLC 127 (583)
Q Consensus 76 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 127 (583)
+|.++|+.+.+.+-+- ...|......-.++|++..|..++...+..+..|.
T Consensus 78 ~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 78 DARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp GCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 9999999987753333 66677777777788999999999998888774443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.39 E-value=6.9 Score=36.89 Aligned_cols=146 Identities=11% Similarity=-0.053 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHH----
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKV---DIVAWNMLVEGYCRM-GLVEEAKRIIERMKENGFYPNVATY---- 431 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~g~~p~~~~~---- 431 (583)
...+...|.+.|+.++..+++.....-.+.-+ .......++..+... +..+.-.++..+..+.... +..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34455555566666655555554432111111 122344455554443 2233333333333321000 11122
Q ss_pred --HHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCC-CC--HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 432 --GSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLK-PD--EELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 432 --~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
..++..|...|++.+|.+++.++.+.... +. +. ..++..-+..|...|++.++...+.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~--------------~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKK--------------LDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT--------------SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc--------------cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 25677899999999999999999887531 11 11 2556666788999999999999999885
Q ss_pred H--cCCCCCHHHHHHH
Q 007970 507 E--HGIPPNKTKYKKI 520 (583)
Q Consensus 507 ~--~~~~p~~~~~~~~ 520 (583)
. ..+.+++..-..+
T Consensus 167 ~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 167 TTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHSCCCHHHHHHH
T ss_pred hhhccCCCCHHHHHHH
Confidence 4 3344656554443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=1.6 Score=41.49 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH---
Q 007970 430 TYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACME--- 506 (583)
Q Consensus 430 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 506 (583)
+...++..+...|++++++..+..+.... +-+...+..++.++.+.|+..+|++.|+.+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-----------------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-----------------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34556777889999999999999998762 4466899999999999999999999999974
Q ss_pred --HcCCCCCHHHHH
Q 007970 507 --EHGIPPNKTKYK 518 (583)
Q Consensus 507 --~~~~~p~~~~~~ 518 (583)
+.|+.|.+.+-.
T Consensus 236 ~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 236 ADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHSCCCCHHHHH
T ss_pred HHHhCCCCCHHHHH
Confidence 479999988644
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.73 E-value=4.5 Score=30.97 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=58.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHHHHHHHHHHHhhhhHHH
Q 007970 423 GFYPNVATYGSLANGISLARKP---GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EELLDALADICVRAAFFRK 497 (583)
Q Consensus 423 g~~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 497 (583)
+-.|+..+--.+..++.+.... .+++.+++.+.+. .|. ...+-.|.-++.+.|++++
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~------------------~~~~~Rd~LYyLAvg~yklgdY~~ 96 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------------------AESRRRECLYYLTIGCYKLGEYSM 96 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH------------------CGGGHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------------------CcchhHHHHHHHHHHHHHhhhHHH
Confidence 3457777777788888777654 4688888888875 452 4677778889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH
Q 007970 498 ALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 498 A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
|.+..+.+.+ +.|+..-...+
T Consensus 97 Ar~y~d~lL~--~eP~N~QA~~L 117 (134)
T 3o48_A 97 AKRYVDTLFE--HERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHT--TCTTCHHHHHH
T ss_pred HHHHHHHHHh--hCCCCHHHHHH
Confidence 9999999984 67776655444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.67 E-value=1.8 Score=34.66 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccC--
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKEN-GFYPN-------VATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNA-- 467 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~-g~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-- 467 (583)
.-++.+...|.++.|+-+.+.+... +..|+ ..++..+..++...|++.+|...|+++++...........
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3356677788888888777765432 11233 2356667778888999999999998887664421111100
Q ss_pred --C--CCCC--CCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 468 --D--SDLP--PPLKPDEELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 468 --~--~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
. ...+ ....++.+.-.-+..+|.+.|++++|+.+++.+.
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 0 0000 0233344555567889999999999999998653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.39 E-value=12 Score=41.44 Aligned_cols=170 Identities=10% Similarity=0.027 Sum_probs=98.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCC
Q 007970 99 MIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENE 178 (583)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (583)
++..+...+..+.+.++... .+.++..-..+..+|...|++++|.+.|++....- ...
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~-----------------~~~ 875 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVL-----------------YSH 875 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSC-----------------TTC
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-----------------ccc
Confidence 44445555666555543322 23344444556777888888888888887653210 000
Q ss_pred CCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC--HHHHHH
Q 007970 179 GDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD--HVTYTT 256 (583)
Q Consensus 179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~ 256 (583)
........-+..+.... .....-..-|..++..+.+.+.++.+.++-....+.... ..++ ...|..
T Consensus 876 ~~l~~~~~~~~~~~~~~-----------~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~-~~~~~~~~l~~~ 943 (1139)
T 4fhn_B 876 TSQFAVLREFQEIAEKY-----------HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET-DDEDLSIAITHE 943 (1139)
T ss_dssp CCSCSSHHHHHHHHHTT-----------TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCS-CCHHHHHHHHHH
T ss_pred chhhhhhcccccccccc-----------cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccC-CChhhHHHHHHH
Confidence 11111111111111000 001123456788888999999999998888777664211 1111 125788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007970 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDK 304 (583)
Q Consensus 257 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 304 (583)
+.+.+...|++++|...+-.+..... -......|+...|..+..+.
T Consensus 944 iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 944 TLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 88999999999999988887776543 35667777777776666543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.02 E-value=6 Score=43.77 Aligned_cols=144 Identities=9% Similarity=-0.021 Sum_probs=93.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC------------------
Q 007970 328 LIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRV------------------ 389 (583)
Q Consensus 328 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------ 389 (583)
++..+...+.++-+.++..- ++.+....-.+..++...|++++|.++|++.....+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44455566666655544322 2334444455666788889999999998776431100
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhh
Q 007970 390 ---KVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNV----ATYGSLANGISLARKPGEALLLWKEIKERCEVKK 462 (583)
Q Consensus 390 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 462 (583)
..-..-|..++..+-+.+.++.+.++-....+..-.-+. ..|..+...+...|++++|...+-.+...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~----- 967 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT----- 967 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-----
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-----
Confidence 011245778888999999999999998887764222222 25778888999999999999888777643
Q ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHhhhh
Q 007970 463 EGVNADSDLPPPLKPDEELLDALADICVRAAF 494 (583)
Q Consensus 463 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 494 (583)
.--..++..|+..++..|.
T Consensus 968 -------------~~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 968 -------------PLKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp -------------SSCHHHHHHHHHHHHHHCC
T ss_pred -------------HHHHHHHHHHHHHHHhCCC
Confidence 3334667777665554444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.92 E-value=5.7 Score=30.86 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC--CHHHHHHHHHHHHhhhhHHHH
Q 007970 424 FYPNVATYGSLANGISLARKP---GEALLLWKEIKERCEVKKEGVNADSDLPPPLKP--DEELLDALADICVRAAFFRKA 498 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 498 (583)
-.|+..+--.+..++.+.... .+++.+++.+... .| ....+..|.-++.+.|++++|
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~------------------~~~~~RdcLYyLAvg~ykl~~Y~~A 96 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------------------AESRRRECLYYLTIGCYKLGEYSMA 96 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH------------------CCSTHHHHHHHHHHHHHTTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------------------CccchhHHHHHHHHHHHHhhhHHHH
Confidence 357777777788888877754 4688888888775 44 236666778899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH
Q 007970 499 LEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 499 ~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
.++.+.+.+ +.|+..-...+
T Consensus 97 r~y~d~lL~--~eP~n~QA~~L 116 (144)
T 1y8m_A 97 KRYVDTLFE--HERNNKQVGAL 116 (144)
T ss_dssp HHHHHHHHH--TCCCCHHHHHH
T ss_pred HHHHHHHHh--cCCCcHHHHHH
Confidence 999999986 56766544433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.60 E-value=4 Score=29.40 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
+.-+..+-++.+....+.|++.+....+++|.+.+++..|+++++.+..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~ 75 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 75 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 455666777777777778888888888888888888888888888777763
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.22 E-value=4 Score=42.19 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=49.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 007970 100 IKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMRE 156 (583)
Q Consensus 100 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 156 (583)
...|...|+++.|+.+-++....- |.+-.+|..|..+|...|+++.|+-.+..++-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 355677899999999999998874 66788999999999999999999999988863
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.97 E-value=1.6 Score=41.44 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 007970 360 YTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMK-----ENGFYPNVATYGSL 434 (583)
Q Consensus 360 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~~~~l 434 (583)
...++.++...|+++++...+..+.. ..+.+...|..+|.++.+.|+..+|++.|+.+. +.|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44566777788999999988888876 456688889999999999999999999998865 35888988765544
Q ss_pred HH
Q 007970 435 AN 436 (583)
Q Consensus 435 ~~ 436 (583)
-.
T Consensus 252 ~~ 253 (388)
T 2ff4_A 252 ER 253 (388)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.95 E-value=2.4 Score=30.53 Aligned_cols=62 Identities=10% Similarity=0.175 Sum_probs=46.8
Q ss_pred cchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 74 PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 74 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
.-+..+-++.+....+-|++....+.+++|.+.+++..|.++++.++..- .....+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 44567777777777888999999999999999999999999998887653 333445665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.53 E-value=5.2 Score=32.07 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=67.0
Q ss_pred CCCCCCHHH--HHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH--HHHHHHHHHHHhhhhHHH
Q 007970 422 NGFYPNVAT--YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE--ELLDALADICVRAAFFRK 497 (583)
Q Consensus 422 ~g~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 497 (583)
.|+.|.... +-.-+..+...|.++.|+-+...+......... -+.|.. .++..+.+++...|.|..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~----------~~sp~~~~~~l~~ladalf~~~eyrr 81 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPE----------LFSPPQKYQLLVYHADSLFHDKEYRN 81 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTT----------SSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcc----------cccHHHHHHHHHHHHHHHHcccHHHH
Confidence 355554433 344456678899999999888887665321000 012222 577778899999999999
Q ss_pred HHHHHHHHHH--cCC--CCC-------------------HHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007970 498 ALEIVACMEE--HGI--PPN-------------------KTKYKKIYVEMHSRMFTSKHASQARQDRRRERKRAAEAFKF 554 (583)
Q Consensus 498 A~~~~~~~~~--~~~--~p~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 554 (583)
|...|+...+ ..+ .++ .....-.+..++... ++.++|+..
T Consensus 82 A~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l-----------------~~~~~Ai~~ 144 (167)
T 3ffl_A 82 AVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVL-----------------KQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHT-----------------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHH-----------------CCHHHHHHH
Confidence 9999999743 111 111 011111124444444 899999999
Q ss_pred HhcCCCCC
Q 007970 555 WLGLPNSY 562 (583)
Q Consensus 555 ~~~~~~~~ 562 (583)
++++|.+-
T Consensus 145 Le~Ip~k~ 152 (167)
T 3ffl_A 145 LDGIPSRQ 152 (167)
T ss_dssp HHTSCGGG
T ss_pred HhcCCchh
Confidence 99998753
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.66 E-value=7.1 Score=29.83 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
+.-+..+-++.+....+.|++.+....+++|.+.+++..|+++++-++.+.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 445566667777777788888888888888888888888888888887764
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.05 E-value=9.6 Score=29.20 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHH
Q 007970 90 KPDVLTYNVMIKLCARASR---KHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCK 163 (583)
Q Consensus 90 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 163 (583)
.|+..+--....++.+..+ ...++.+++.+.+.+.......+..|.-++.+.|+++.|.+..+.+.+..|+...
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4666665556666666654 4467888888888762234556667888899999999999999999887665443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.15 E-value=12 Score=28.58 Aligned_cols=60 Identities=10% Similarity=0.198 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 76 KFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 76 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
+..+-++.+....+-|++....+.+++|.+.+++..|.++|+-++.+- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455556666666777888888888888888888888888888776652 333445555443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.33 E-value=17 Score=28.23 Aligned_cols=68 Identities=12% Similarity=-0.050 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 390 KVDIVAWNMLVEGYCRMGLVE---EAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 390 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.|+..+--.+..++++..+.+ +++.+++.+...+..-.....-.+.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355555555555566555433 45556665554321112223333444566666666666666666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 583 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.14 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.06 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.02 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.0 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.54 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.52 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.38 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.35 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.33 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.21 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.16 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.11 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.08 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.07 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.94 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.85 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.84 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.81 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.8 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.79 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.71 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.68 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.64 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.63 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.54 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.25 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.2 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.04 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.89 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.6 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.88 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.68 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.37 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.96 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.25 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.98 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=2e-21 Score=187.77 Aligned_cols=382 Identities=14% Similarity=0.038 Sum_probs=309.2
Q ss_pred HHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHH
Q 007970 17 VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96 (583)
Q Consensus 17 i~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 96 (583)
...+-+.|+ +++|+..|+++.+. .|-++.++..+..+|.+.|++++|+..|+.+.+..+ -+..+|
T Consensus 6 a~~~~~~G~--~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~ 70 (388)
T d1w3ba_ 6 AHREYQAGD--FEAAERHCMQLWRQ------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAY 70 (388)
T ss_dssp HHHHHHHTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHcCC--HHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHH
Confidence 345667788 99999999999875 445688899999999999999999999999988653 356788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhcccccc
Q 007970 97 NVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSE 176 (583)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (583)
..+..++.+.|++++|+..+....+.. +.+..............+....+..........
T Consensus 71 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 130 (388)
T d1w3ba_ 71 SNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY------------------- 130 (388)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-------------------
T ss_pred HHHHHHhhhhccccccccccccccccc-ccccccccccccccccccccccccccccccccc-------------------
Confidence 889999999999999999999988875 445555555555555555555555544433321
Q ss_pred CCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHH
Q 007970 177 NEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTT 256 (583)
Q Consensus 177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 256 (583)
..................+....+...+...... .+.+...+..
T Consensus 131 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 174 (388)
T d1w3ba_ 131 --------------------------------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET----QPNFAVAWSN 174 (388)
T ss_dssp --------------------------------CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred --------------------------------ccccccccccccccccccchhhhhHHHHHHhhcc----CcchhHHHHh
Confidence 1344555666777777888888888888887775 3445778888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 007970 257 VVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILID 336 (583)
Q Consensus 257 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 336 (583)
+...+...|+++.|...++...+.. +.+...+..+...+...|++++|...++...... +.+...+..+...+...|
T Consensus 175 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 251 (388)
T d1w3ba_ 175 LGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred hcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh--hhHHHHHHHHHHHHHHCC
Confidence 8899999999999999999988764 4567888999999999999999999999987643 456778888889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 007970 337 DSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRII 416 (583)
Q Consensus 337 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 416 (583)
++++|+..|++..+.. +-+...+..+..++...|++++|.+.++.... ..+.+...+..+..++.+.|++++|++.|
T Consensus 252 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 328 (388)
T d1w3ba_ 252 LIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLY 328 (388)
T ss_dssp CHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998863 44678889999999999999999999999887 45678889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhh
Q 007970 417 ERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAF 494 (583)
Q Consensus 417 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 494 (583)
++..+.. +-+..++..+..+|...|++++|+..|+++++. .|+ ..++..+..+|.+.||
T Consensus 329 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l------------------~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 329 RKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI------------------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT------------------CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCC
Confidence 9998752 335778888999999999999999999999864 776 4788899998888775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=7.3e-21 Score=183.77 Aligned_cols=378 Identities=13% Similarity=0.041 Sum_probs=311.3
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCC
Q 007970 64 VLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGD 143 (583)
Q Consensus 64 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 143 (583)
+...+.+.|++++|++.|+++.+..+ -+..++..+..++.+.|++++|+..|+++++.. +.+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 45677899999999999999988653 357788889999999999999999999999985 5678899999999999999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 007970 144 LEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGY 223 (583)
Q Consensus 144 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 223 (583)
+++|...+....... +.+...+.......
T Consensus 83 ~~~A~~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~~~~ 111 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLK---------------------------------------------------PDFIDGYINLAAAL 111 (388)
T ss_dssp HHHHHHHHHHHHHHC---------------------------------------------------TTCHHHHHHHHHHH
T ss_pred ccccccccccccccc---------------------------------------------------cccccccccccccc
Confidence 999999998887632 34455566666666
Q ss_pred HhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007970 224 MNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQID 303 (583)
Q Consensus 224 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 303 (583)
...+....+.......... ..................+....+...+....... +.+...+..+...+...|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 186 (388)
T d1w3ba_ 112 VAAGDMEGAVQAYVSALQY----NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHH----CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred ccccccccccccccccccc----ccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHH
Confidence 6777777777776666654 34445556666667777888888888888877654 556788888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007970 304 KAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEM 383 (583)
Q Consensus 304 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 383 (583)
+|...+++.++.. +.+...|..+...+...|++++|+..++...... +.+...+..+...+.+.|++++|...|+++
T Consensus 187 ~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 263 (388)
T d1w3ba_ 187 LAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999987643 3467788999999999999999999999998864 456778888899999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhc
Q 007970 384 LRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKE 463 (583)
Q Consensus 384 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 463 (583)
.+ ..+.+..++..+..++...|++++|++.++..... .+.+...+..+...+...|++++|+..|+++.+.
T Consensus 264 l~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------ 334 (388)
T d1w3ba_ 264 IE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV------ 334 (388)
T ss_dssp HH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS------
T ss_pred HH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 87 34567889999999999999999999999999876 4667888999999999999999999999998754
Q ss_pred cccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhh
Q 007970 464 GVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKT-KYKKIYVEMHS 526 (583)
Q Consensus 464 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~~~~~~l~ 526 (583)
.|+ ..++..+..+|.+.|++++|.+.+++..+ +.|+.. .|..+ ..++.
T Consensus 335 ------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l-g~~~~ 384 (388)
T d1w3ba_ 335 ------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM-GNTLK 384 (388)
T ss_dssp ------------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHH-HHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH-HHHHH
Confidence 665 47888999999999999999999999985 567644 34433 44443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.7e-13 Score=126.45 Aligned_cols=243 Identities=13% Similarity=0.061 Sum_probs=146.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007970 219 LMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQ 298 (583)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (583)
....+.+.|++++|+..|+++.+. .+-+..+|..+..++...|++++|...+....+.. |-+...+..+..+|..
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence 344455555555555555555543 22234455555555555555555555555555432 2334444555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 299 QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANK 378 (583)
Q Consensus 299 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 378 (583)
.|++++|.+.++.+... .|+............ ...+.......+..+...+...+|..
T Consensus 100 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRY---TPAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKE 157 (323)
T ss_dssp TTCHHHHHHHHHHHHHT---STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHh---ccchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHH
Confidence 55555555555554332 111100000000000 00000001111222334456777888
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 379 VFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
.|.+..+......+...+..+...+...|++++|+..+++..... +-+..+|..+..+|...|++++|++.|+++.+.
T Consensus 158 ~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 235 (323)
T d1fcha_ 158 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL- 235 (323)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH-
Confidence 887776533344567788888899999999999999999988752 335778888899999999999999999998876
Q ss_pred hhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 459 EVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.|+ ..++..+..+|.+.|++++|+..|++..+
T Consensus 236 -----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 236 -----------------QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------------hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555 47888899999999999999999999865
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1e-12 Score=122.39 Aligned_cols=271 Identities=14% Similarity=0.008 Sum_probs=182.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccC
Q 007970 98 VMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSEN 177 (583)
Q Consensus 98 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (583)
.....+.+.|++++|+..|+++++.. |-+..+|..+..++...|++++|...|++..+..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------- 83 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK------------------- 83 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-------------------
Confidence 34556677888888888888887764 4566777777888888888888888877776521
Q ss_pred CCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHH
Q 007970 178 EGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTV 257 (583)
Q Consensus 178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 257 (583)
+.+...|..+..+|...|++++|.+.++.+... .|+.......
T Consensus 84 --------------------------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~ 126 (323)
T d1fcha_ 84 --------------------------------PDNQTALMALAVSFTNESLQRQACEILRDWLRY-----TPAYAHLVTP 126 (323)
T ss_dssp --------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----STTTGGGCC-
T ss_pred --------------------------------cccccccccccccccccccccccccchhhHHHh-----ccchHHHHHh
Confidence 345667777778888888888888888777664 2321111000
Q ss_pred HHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 007970 258 VSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDD 337 (583)
Q Consensus 258 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 337 (583)
...... ..+.......+..+...+.+.+|...|.+.+.......+...+..+...+...|+
T Consensus 127 ~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 187 (323)
T d1fcha_ 127 AEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 187 (323)
T ss_dssp ---------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred hhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 000000 0000011112223344566778888888777655545677788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 007970 338 SAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIE 417 (583)
Q Consensus 338 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 417 (583)
+++|+..|++..... +-+...+..+..++...|++++|.+.|+++.+. .+.+..+|..+..+|.+.|++++|++.|+
T Consensus 188 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 264 (323)
T d1fcha_ 188 YDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFL 264 (323)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred Hhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999988763 345778888889999999999999999998872 34567888999999999999999999999
Q ss_pred HHHHCC----------CCCCHHHHHHHHHHHHhcCCHhHH
Q 007970 418 RMKENG----------FYPNVATYGSLANGISLARKPGEA 447 (583)
Q Consensus 418 ~~~~~g----------~~p~~~~~~~l~~~~~~~g~~~~a 447 (583)
+.++.. .......|..+-.++...|+.+.+
T Consensus 265 ~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 265 EALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 887520 111223455555566656665544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.6e-09 Score=97.92 Aligned_cols=217 Identities=12% Similarity=0.090 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 58 TAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARAS-RKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 58 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
..+++.+..++.+.+.+++|+++++.+.+.++ -+..+|+....++...| ++++|+..++..++.. +-+..+|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 56788888888999999999999999998764 35667888888888876 5899999999999886 667889999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccccccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHH
Q 007970 137 AYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYSSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIY 216 (583)
Q Consensus 137 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (583)
++.+.|++++|+..++.+.+.. +.+..+|
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d---------------------------------------------------p~n~~a~ 149 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD---------------------------------------------------AKNYHAW 149 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---------------------------------------------------TTCHHHH
T ss_pred HHHhhccHHHHHHHHhhhhhhh---------------------------------------------------hcchHHH
Confidence 9999999999999999888742 4678899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhCCCCCCHHHHH
Q 007970 217 TTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGS------MDRARQVLAEMTRIGVPANRITYN 290 (583)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~ 290 (583)
..+..++.+.|++++|++.++.+.+. -+.+...|+.+...+.+.+. +++|++.+..+++.. |.+...+.
T Consensus 150 ~~~~~~~~~~~~~~~Al~~~~~al~~----~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~ 224 (315)
T d2h6fa1 150 QHRQWVIQEFKLWDNELQYVDQLLKE----DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWN 224 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH----CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHH
Confidence 99999999999999999999999885 34567778877777666654 567888888877764 45677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 007970 291 ILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333 (583)
Q Consensus 291 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 333 (583)
.+...+.. ...+++...++...+......+...+..++..|.
T Consensus 225 ~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 225 YLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 66655443 4456777777766554333445555555555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=1.2e-08 Score=93.44 Aligned_cols=199 Identities=8% Similarity=0.006 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG-SMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
..+++.+...+.+.+++++|+++++++... -+-+...|+....++...| ++++|+..++.+++.. +-+..+|..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l----nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~ 117 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 117 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHH
Confidence 445555666666666666666666666664 2334455555555555544 3566666666655543 344555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 292 LLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSS 371 (583)
Q Consensus 292 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 371 (583)
+...+.+.|++++|+..++++++.. +.+...|..+...+...|++++|+..++++.+..
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~------------------- 176 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED------------------- 176 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------------------
T ss_pred HhHHHHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-------------------
Confidence 5555555566655555555555432 2344555555555555555555555555555432
Q ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 007970 372 QPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL------VEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445 (583)
Q Consensus 372 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 445 (583)
+.+...|+.+..++.+.+. +++|++.+.++++.. +.+...|..+...+.. ...+
T Consensus 177 ------------------p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~ 236 (315)
T d2h6fa1 177 ------------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLS 236 (315)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGG
T ss_pred ------------------CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChH
Confidence 2233344433333333332 456666666665542 2245555555444433 3345
Q ss_pred HHHHHHHHHHHH
Q 007970 446 EALLLWKEIKER 457 (583)
Q Consensus 446 ~a~~~~~~~~~~ 457 (583)
++.+.++...+.
T Consensus 237 ~~~~~~~~~~~l 248 (315)
T d2h6fa1 237 KYPNLLNQLLDL 248 (315)
T ss_dssp GCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 566666665544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.4e-08 Score=95.08 Aligned_cols=281 Identities=11% Similarity=-0.018 Sum_probs=197.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C----CHHH
Q 007970 215 IYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVP-A----NRIT 288 (583)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~ 288 (583)
........+...|++++|++++++.....+....+ ....+..+...+...|++++|...++...+.... + ....
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 44455677889999999999999988752110000 0246777888999999999999999988753211 1 1344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHH
Q 007970 289 YNILLKGYCQQLQIDKAKELLREMADD---AKIEP---DVVSYNILIDGFILIDDSAGALTFFNEMRARGIA----PTKI 358 (583)
Q Consensus 289 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~ 358 (583)
+..+...+...|++..+...+...... ..... ....+..+...+...|+++.+...+......... ....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 566777888999999999988876431 11111 1235566777888999999999999988764222 2234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHH
Q 007970 359 SYTTLMKAFALSSQPKLANKVFDEMLRD---PRVKV--DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP---NVAT 430 (583)
Q Consensus 359 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~ 430 (583)
.+......+...+....+...+...... .+..+ ....+..+...+...|++++|...+.+........ ....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 4555666777889998888887765431 11111 13346667778889999999999999876542221 2445
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 431 YGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 431 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
+..+..++...|++++|...++++....... +..|+. .++..+..+|.+.|++++|.+.+++..+
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSL------------RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc------------ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6677888999999999999999987653210 224443 6788888999999999999999998754
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=4.8e-08 Score=91.26 Aligned_cols=195 Identities=13% Similarity=0.071 Sum_probs=97.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C----CHHHH
Q 007970 255 TTVVSALVKAGSMDRARQVLAEMTRIG----VPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIE-P----DVVSY 325 (583)
Q Consensus 255 ~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~----~~~~~ 325 (583)
..+...+...|+++.+...+....... .......+......+...+++..+...+.......... . ....+
T Consensus 137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (366)
T d1hz4a_ 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 216 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 334445555555555555555544321 11122333344444555555555555554432211100 1 11233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCC-CHHHHHH
Q 007970 326 NILIDGFILIDDSAGALTFFNEMRARGIAPT---KISYTTLMKAFALSSQPKLANKVFDEMLRD---PRVKV-DIVAWNM 398 (583)
Q Consensus 326 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~ 398 (583)
..+...+...|++++|...++.........+ ...+..+..++...|++++|...++.+... .+..| ...++..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 4444555666677777666666544322111 233444566667777777777777665421 12222 2345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCC----CCHHHHHHHHHHHHhcCCHhHHHH
Q 007970 399 LVEGYCRMGLVEEAKRIIERMKEN----GFY----PNVATYGSLANGISLARKPGEALL 449 (583)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~~----g~~----p~~~~~~~l~~~~~~~g~~~~a~~ 449 (583)
+..+|.+.|++++|.+.+++..+. |.. -....+..++..+...++.+++..
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 777778888888888887776532 211 012234444555555666555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=2.5e-08 Score=91.18 Aligned_cols=221 Identities=10% Similarity=0.016 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH--------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007970 230 SDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK--------------AGSMDRARQVLAEMTRIGVPANRITYNILLKG 295 (583)
Q Consensus 230 ~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (583)
+.+..+|+++... .+.+...|..-+..+.. .+..++|..+|+..++...+.+...+..++..
T Consensus 33 ~Rv~~vyerAl~~----~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~ 108 (308)
T d2onda1 33 KRVMFAYEQCLLV----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455567776664 34455666555543322 23458899999999876556677788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHH
Q 007970 296 YCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKA-FALSSQPK 374 (583)
Q Consensus 296 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~ 374 (583)
+...|+++.|..+|++++... .......|...+..+.+.|+.+.|.++|+.+.+.+ +.+...|...... +...|+.+
T Consensus 109 ~~~~~~~~~a~~i~~~~l~~~-~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~ 186 (308)
T d2onda1 109 EESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHH
T ss_pred HHhcccHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHH
Confidence 999999999999999997532 12234578899999999999999999999998874 3344455444433 34468999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHhHHHHHH
Q 007970 375 LANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG-FYPN--VATYGSLANGISLARKPGEALLLW 451 (583)
Q Consensus 375 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 451 (583)
.|..+|+.+.+ ..+.+...|...+..+.+.|+++.|..+|++..... ..|+ ...|...+..-...|+.+.+..++
T Consensus 187 ~a~~i~e~~l~--~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~ 264 (308)
T d2onda1 187 VAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHH--hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999988 356678899999999999999999999999998753 3332 457888887778889999999999
Q ss_pred HHHHHHh
Q 007970 452 KEIKERC 458 (583)
Q Consensus 452 ~~~~~~~ 458 (583)
+++.+..
T Consensus 265 ~r~~~~~ 271 (308)
T d2onda1 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 9998763
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.4e-09 Score=96.97 Aligned_cols=219 Identities=12% Similarity=-0.066 Sum_probs=142.1
Q ss_pred hhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 229 VSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKEL 308 (583)
Q Consensus 229 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 308 (583)
.+.++.-+++.........+-...+|..+..+|.+.|++++|+..|+..++.. |-+..++..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 44555555666553110001123567778888999999999999999999865 56788899999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 007970 309 LREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPR 388 (583)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 388 (583)
|+++++.. +.+..++..+..++...|++++|...|+...+.. +.+......+..++.+.+..+.+..+........
T Consensus 94 ~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 169 (259)
T d1xnfa_ 94 FDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD- 169 (259)
T ss_dssp HHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-
T ss_pred hhHHHHHH--hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc-
Confidence 99998753 3346678888888999999999999999988763 3344444444445555565555555555554421
Q ss_pred CCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 389 VKVDIVAWNMLVEGYCRMGL----VEEAKRIIERMKENGFYPN-VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 389 ~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+....++ ++..+..... .+.+...+...... .|+ ..++..+...+...|++++|+..|++++..
T Consensus 170 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 170 --KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp --CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1111222 2222222211 22222222222211 122 345667888899999999999999999865
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.09 E-value=3.3e-08 Score=90.32 Aligned_cols=220 Identities=11% Similarity=0.028 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--------------cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 007970 268 DRARQVLAEMTRIGVPANRITYNILLKGYCQ--------------QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI 333 (583)
Q Consensus 268 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 333 (583)
+.+..+|+.++..- +.+...|...+..+.. .+..++|..+|++.++. ..+.+...|...+..+.
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~-~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHH
Confidence 44555666666542 4456666655554432 23457889999998752 23456677888888899
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHHcCCHHHH
Q 007970 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEG-YCRMGLVEEA 412 (583)
Q Consensus 334 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A 412 (583)
..|+++.|..+|+.+...........|...+..+.+.++.+.|.++|+++.+. .+.+...|...... +...|+.+.|
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHH
Confidence 99999999999999988643333557889999999999999999999999874 33444445444433 3446899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC--HHHHHHHHHHHH
Q 007970 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD--EELLDALADICV 490 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~ 490 (583)
..+|+.+.+. .+.+...|..++..+...|++++|..+|+++.+.. +..|+ ..+|...+..-.
T Consensus 189 ~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~---------------~~~~~~~~~iw~~~~~fE~ 252 (308)
T d2onda1 189 FKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG---------------SLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS---------------SSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHHHHH
Confidence 9999999986 45578899999999999999999999999998863 23443 367888888878
Q ss_pred hhhhHHHHHHHHHHHHH
Q 007970 491 RAAFFRKALEIVACMEE 507 (583)
Q Consensus 491 ~~g~~~~A~~~~~~~~~ 507 (583)
..|+.+.+.++++.+.+
T Consensus 253 ~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 253 NIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88999999999998865
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=1.8e-08 Score=89.55 Aligned_cols=220 Identities=7% Similarity=-0.117 Sum_probs=152.3
Q ss_pred hHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007970 267 MDRARQVLAEMTRIGVPA---NRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALT 343 (583)
Q Consensus 267 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 343 (583)
.+.++.-++++....... ...++..+..+|.+.|++++|+..|++.++.. +.+..+|..+..+|...|++++|+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 455666666666542111 23466777889999999999999999998753 4567889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 007970 344 FFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENG 423 (583)
Q Consensus 344 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 423 (583)
.|+++.+.. +.+...+..+..++...|++++|...|+...+. .+.+......+..++.+.+..+.+..+........
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 999999863 345678888999999999999999999999873 34556555555566677777666666666666542
Q ss_pred CCCCHHHHHHHHHHHHhc----CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHH
Q 007970 424 FYPNVATYGSLANGISLA----RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKA 498 (583)
Q Consensus 424 ~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 498 (583)
++...+. ++..+... +..+.+...+...... .|+. .++..+...|...|++++|
T Consensus 170 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~lg~~~~~~g~~~~A 228 (259)
T d1xnfa_ 170 --KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSL------------------AEHLSETNFYLGKYYLSLGDLDSA 228 (259)
T ss_dssp --CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHH------------------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred --hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhc------------------CcccHHHHHHHHHHHHHCCCHHHH
Confidence 2222222 22222211 1122222222222221 3333 5677789999999999999
Q ss_pred HHHHHHHHHcCCCCCH
Q 007970 499 LEIVACMEEHGIPPNK 514 (583)
Q Consensus 499 ~~~~~~~~~~~~~p~~ 514 (583)
.+.+++... ..|+.
T Consensus 229 ~~~~~~al~--~~p~~ 242 (259)
T d1xnfa_ 229 TALFKLAVA--NNVHN 242 (259)
T ss_dssp HHHHHHHHT--TCCTT
T ss_pred HHHHHHHHH--cCCCC
Confidence 999999885 45654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=1.9e-09 Score=100.20 Aligned_cols=266 Identities=9% Similarity=-0.003 Sum_probs=191.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCC-HHHHHHHHHH----------HHHcCChHHHHHHHHHHHhCCCCC
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPD-HVTYTTVVSA----------LVKAGSMDRARQVLAEMTRIGVPA 284 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~----------~~~~g~~~~a~~~~~~~~~~~~~~ 284 (583)
+..++....+.+..++|++++..+... .|+ ...|+..-.. +...|.+++|+.+++.+.+.. |.
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~-----~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk 105 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA-----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PK 105 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 344444444445568999999999874 444 4445433322 233445789999999988765 56
Q ss_pred CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 007970 285 NRITYNILLKGYCQQL--QIDKAKELLREMADDAKIEPDVVSYN-ILIDGFILIDDSAGALTFFNEMRARGIAPTKISYT 361 (583)
Q Consensus 285 ~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 361 (583)
+...+..+..++...+ ++++|...+..++... +++...+. .....+...+.+++|+..++.+.... +-+...|.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~ 182 (334)
T d1dcea1 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWH 182 (334)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHH
T ss_pred cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHH
Confidence 7778887777777765 4889999999987642 34566654 44467778899999999999988874 44688888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLA 441 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 441 (583)
.+..++...|++++|...+....+. .|. ...+...+...+..+++...+....... +++...+..+...+...
T Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~ 255 (334)
T d1dcea1 183 YRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVL 255 (334)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHH
Confidence 8888999999988776655544431 111 1223344566677888888888887753 44555666777778888
Q ss_pred CCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 442 RKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDE-ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 442 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
|++.+|+..+.+.... .|+. .++..++.++.+.|++++|.+.+++..+ +.|+...|
T Consensus 256 ~~~~~a~~~~~~~~~~------------------~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y 312 (334)
T d1dcea1 256 QSELESCKELQELEPE------------------NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAY 312 (334)
T ss_dssp HHHHHHHHHHHHHCTT------------------CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHH
T ss_pred hhHHHHHHHHHHHHhh------------------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHH
Confidence 9999999999888754 5654 7888899999999999999999999986 57765544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.00 E-value=4e-09 Score=97.96 Aligned_cols=235 Identities=10% Similarity=0.000 Sum_probs=171.4
Q ss_pred HHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhc
Q 007970 223 YMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAG--SMDRARQVLAEMTRIGVPANRITYN-ILLKGYCQQ 299 (583)
Q Consensus 223 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~ 299 (583)
+...|++++|+..++..... .+.+...|..+..++...+ ++++|...+..+.+.. +.+...+. .....+...
T Consensus 83 ~~~~~~~~~al~~~~~~l~~----~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~ 157 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAA 157 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhc
Confidence 34456688999999998875 4456777887777777765 4889999999998865 44566554 445677788
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007970 300 LQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKV 379 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 379 (583)
+.+++|+..++.+++.. +.+...|..+...+...|++++|...+...... .|. ...+...+...+..+++...
T Consensus 158 ~~~~~Al~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~ 230 (334)
T d1dcea1 158 VAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWF 230 (334)
T ss_dssp CCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHH
T ss_pred cccHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHH
Confidence 99999999999887643 457788999999999999988876655544332 111 12233344556777778887
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhh
Q 007970 380 FDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCE 459 (583)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 459 (583)
+..... ..+++...+..+...+...+++++|...+.+..+.. +.+..++..+..++...|++++|++.++++.+.
T Consensus 231 ~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l-- 305 (334)
T d1dcea1 231 YHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV-- 305 (334)
T ss_dssp HHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--
T ss_pred HHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 777766 334555566677778888899999999999887642 224567788888999999999999999999986
Q ss_pred hhhccccCCCCCCCCCCCCH-HHHHHHHHHHH
Q 007970 460 VKKEGVNADSDLPPPLKPDE-ELLDALADICV 490 (583)
Q Consensus 460 ~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 490 (583)
.|+. ..|..|...+.
T Consensus 306 ----------------dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 306 ----------------DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp ----------------CGGGHHHHHHHHHHHH
T ss_pred ----------------CcccHHHHHHHHHHHh
Confidence 7765 55666655554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.8e-06 Score=65.31 Aligned_cols=100 Identities=10% Similarity=-0.102 Sum_probs=78.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC
Q 007970 399 LVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPD 478 (583)
Q Consensus 399 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 478 (583)
-...+.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|+..+.++.+.. +.+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------------p~~ 70 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-----------------PDW 70 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------TTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-----------------cch
Confidence 4566788889999999999888762 4467788888888888999999999999888762 334
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHH
Q 007970 479 EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYK 518 (583)
Q Consensus 479 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (583)
...|..+..++...|++++|+..+++..+ +.|+...+.
T Consensus 71 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~ 108 (117)
T d1elwa_ 71 GKGYSRKAAALEFLNRFEEAKRTYEEGLK--HEANNPQLK 108 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHH
T ss_pred hhHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 57888888888899999999999998874 566655443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=5.3e-06 Score=69.00 Aligned_cols=126 Identities=10% Similarity=-0.047 Sum_probs=99.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007970 220 MKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQ 299 (583)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (583)
...+...|+++.|++.|..+ .+|+..+|..+..++...|++++|++.|++.++.. +.+...|..+..+|.+.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i-------~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~ 83 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 83 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhh
Confidence 66778899999999988754 34677888889999999999999999999999876 56788889999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 007970 300 LQIDKAKELLREMADDAKIEP--------------DVVSYNILIDGFILIDDSAGALTFFNEMRARGI 353 (583)
Q Consensus 300 ~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 353 (583)
|++++|+..|++.+......+ ...++..+..++.+.|++++|.+.+........
T Consensus 84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999988764211111 124555667778888888888888888776543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=4.1e-06 Score=75.18 Aligned_cols=171 Identities=8% Similarity=-0.051 Sum_probs=108.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHh----CCCc-chhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhccc
Q 007970 99 MIKLCARASRKHLLVFVLERILEM----GITL-CMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDY 173 (583)
Q Consensus 99 li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (583)
....|...+++++|.+.|.++.+. +.++ -..+|..+..+|.+.|++++|.+.++......+...
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~----------- 111 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG----------- 111 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc-----------
Confidence 355677788888888888877653 1111 235778888899999999999999887765321100
Q ss_pred cccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhcccC-CCCC-C
Q 007970 174 SSENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMN-EGRVSDTVRMLGAMRRQEDN-ASHP-D 250 (583)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~-~~~~-~ 250 (583)
.......++..+...|.. .|++++|++.+.+....... +..+ -
T Consensus 112 ----------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~ 157 (290)
T d1qqea_ 112 ----------------------------------QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (290)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----------------------------------cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 001224456666777754 69999999999887643110 1111 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 007970 251 HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR------ITYNILLKGYCQQLQIDKAKELLREMAD 314 (583)
Q Consensus 251 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 314 (583)
..++..+...+...|++++|...|+.+......... ..+...+.++...++++.|...+++..+
T Consensus 158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345677778888888888888888887764322111 1223344456667788888877777754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=3.6e-06 Score=70.00 Aligned_cols=135 Identities=16% Similarity=-0.034 Sum_probs=98.1
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHh
Q 007970 366 AFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPG 445 (583)
Q Consensus 366 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 445 (583)
.+...|+++.|++.|..+. +++..+|..+..+|...|++++|++.|++.++.. +-+...|..+..+|.+.|+++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 4567888999988887653 3677888888999999999999999999988763 446778888888899999999
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCCCCCCCCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Q 007970 446 EALLLWKEIKERCEVKKEGVNADSDLPPPLKPD-EELLDALADICVRAAFFRKALEIVACMEEH 508 (583)
Q Consensus 446 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 508 (583)
+|+..|++......... ............++ ..++..+..++.+.|++++|.+.++...+.
T Consensus 88 ~A~~~~~kAl~~~~~n~--~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQ--LIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCS--EEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCc--hHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999988876421100 00000000011222 356777888999999999999999998753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=5.8e-06 Score=74.16 Aligned_cols=207 Identities=10% Similarity=-0.023 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCC-CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC----CC-CCCH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNA-SHP-DHVTYTTVVSALVKAGSMDRARQVLAEMTRI----GV-PANR 286 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~ 286 (583)
..|......|...+++++|.+.|.+........ ..+ -..+|..+..+|.+.|++++|.+.++...+. +. ....
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 357777889999999999999999886642111 111 2357888899999999999999999887642 11 1113
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHhc---CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----
Q 007970 287 ITYNILLKGYC-QQLQIDKAKELLREMADD---AKIEP-DVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTK---- 357 (583)
Q Consensus 287 ~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---- 357 (583)
.++..+...|. ..|++++|.+.+++..+. .+..+ -..++..+...+...|++++|+..|+++.........
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 44556666664 469999999999877542 11111 1345777888899999999999999998775322111
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC---HHHHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 007970 358 --ISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVD---IVAWNMLVEGYCR--MGLVEEAKRIIERMK 420 (583)
Q Consensus 358 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 420 (583)
..+...+..+...++++.|...+++..+.....++ ......++.++-. .+.+++|+..|+.+.
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 12334444566789999999999988763111111 2344556666554 245777777776544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.42 E-value=0.00045 Score=60.40 Aligned_cols=111 Identities=14% Similarity=-0.035 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 007970 373 PKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----ARKP 444 (583)
Q Consensus 373 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~ 444 (583)
...+...+..... ..+...+..|...|.. ..+...+..+++...+.| +......+...|.. ..++
T Consensus 126 ~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 126 FKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp HHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred hHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence 4445555544433 1344455555555554 344555666666655543 34444444444433 3466
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHcC
Q 007970 445 GEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVR----AAFFRKALEIVACMEEHG 509 (583)
Q Consensus 445 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 509 (583)
++|+.+|++..+. -+...+..|..+|.+ ..+.++|.++|++..+.|
T Consensus 199 ~~A~~~~~~aa~~-------------------g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 199 KEALARYSKACEL-------------------ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHT-------------------TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhhHhhhhcc-------------------cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 6677777666543 123344445555543 225666666666665555
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=8.7e-06 Score=65.39 Aligned_cols=92 Identities=13% Similarity=0.005 Sum_probs=77.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 007970 363 LMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLAR 442 (583)
Q Consensus 363 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 442 (583)
....|.+.|++++|...|+++.+ -.+.+...|..+..+|...|++++|++.|+++++.. +-+..+|..+..++...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 34567788999999999998887 346678888999999999999999999999998763 446678888899999999
Q ss_pred CHhHHHHHHHHHHHH
Q 007970 443 KPGEALLLWKEIKER 457 (583)
Q Consensus 443 ~~~~a~~~~~~~~~~ 457 (583)
++++|+..++++...
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999876
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=6.5e-06 Score=66.16 Aligned_cols=95 Identities=7% Similarity=0.021 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007970 216 YTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKG 295 (583)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (583)
+......|.+.|++++|+..|.+..+. .+.+...|..+..++...|++++|...|+.+++.. +.+...+..+..+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhcccc----chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHH
Confidence 334455666666677777666666664 33455666666666666666666666666666554 4455666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhc
Q 007970 296 YCQQLQIDKAKELLREMADD 315 (583)
Q Consensus 296 ~~~~~~~~~A~~~~~~~~~~ 315 (583)
|...|++++|...+++....
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHc
Confidence 66666666666666666553
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=8e-06 Score=61.52 Aligned_cols=91 Identities=12% Similarity=0.009 Sum_probs=53.5
Q ss_pred HHHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHH
Q 007970 17 VSRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTY 96 (583)
Q Consensus 17 i~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 96 (583)
...+.+.|+ +++|+..|+++++. .|.+...|..+..+|...|++++|+..++...+.+. .+...|
T Consensus 10 g~~~~~~g~--~~eAi~~~~~al~~------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 74 (117)
T d1elwa_ 10 GNKALSVGN--IDDALQCYSEAIKL------------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGY 74 (117)
T ss_dssp HHHHHHTTC--HHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHcCC--HHHHHHHHHHHHhc------------CCcchhhhhcccccccccccccccchhhhhHHHhcc-chhhHH
Confidence 344555555 66666666666553 334555666666666666666666666666665543 345555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHh
Q 007970 97 NVMIKLCARASRKHLLVFVLERILEM 122 (583)
Q Consensus 97 ~~li~~~~~~~~~~~a~~~~~~~~~~ 122 (583)
..+..++...|++++|+..|++..+.
T Consensus 75 ~~~g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 75 SRKAAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66666666666666666666666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.35 E-value=1.8e-06 Score=72.78 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=60.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 007970 320 PDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNML 399 (583)
Q Consensus 320 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 399 (583)
|+...+......|.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|...|+.+++ -.+-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 455555555666666666666666666665542 33555566666666666666666666666654 223345566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 007970 400 VEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 400 i~~~~~~g~~~~A~~~~~~~~~ 421 (583)
..+|.+.|++++|+..|+++.+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666666553
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.33 E-value=2.7e-06 Score=71.66 Aligned_cols=99 Identities=14% Similarity=0.005 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 007970 355 PTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYP-NVATYGS 433 (583)
Q Consensus 355 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 433 (583)
|+...+......+.+.|++++|+..|+++++ -.|.+...|..+..+|.+.|++++|+..|++.++. .| +..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHH
Confidence 6777788888899999999999999999887 35678889999999999999999999999999874 44 5778899
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 434 LANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 434 l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+..+|...|++++|+..|+++.+.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999998875
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=6.4e-06 Score=61.48 Aligned_cols=90 Identities=16% Similarity=0.052 Sum_probs=76.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC
Q 007970 398 MLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP 477 (583)
Q Consensus 398 ~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 477 (583)
.+...+.+.|++++|+..|++.++.. +-+...|..+..++.+.|++++|+..++++.+. .|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~------------------~p 81 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML------------------DP 81 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CT
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc------------------cc
Confidence 45667888999999999999998763 336788889999999999999999999999876 55
Q ss_pred C-HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007970 478 D-EELLDALADICVRAAFFRKALEIVACME 506 (583)
Q Consensus 478 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 506 (583)
+ ...+..+..+|...|++++|++.+++.+
T Consensus 82 ~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 82 KDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 5 5888889999999999999999998763
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=7.5e-06 Score=61.90 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HhHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 397 NMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARK---PGEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 397 ~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
..++..+...+++++|.+.|++.+..+ +.+..++..+..++.+.++ +++|+.+++++...
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~---------------- 65 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK---------------- 65 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----------------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----------------
Confidence 356667778888888888888888763 4567788888888876554 44688888887654
Q ss_pred CCCCCH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 474 PLKPDE---ELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 474 ~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
.|+. .++..+..+|.+.|++++|++.|+++.+ +.|+......+
T Consensus 66 --~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l 111 (122)
T d1nzna_ 66 --GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKEL 111 (122)
T ss_dssp --SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred --cCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hCcCCHHHHHH
Confidence 3332 3677788888888888888888888876 56766554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.16 E-value=0.0018 Score=56.30 Aligned_cols=223 Identities=13% Similarity=0.027 Sum_probs=161.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhCCCCCCHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVK----AGSMDRARQVLAEMTRIGVPANRI 287 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 287 (583)
|+..+..|...+.+.+++++|+++|++..+.+ +...+..|...|.. ..+...|...+....+.+ +..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~ 71 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 71 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccc
Confidence 45678888888999999999999999998752 55666667777766 568999999999988876 344
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHH
Q 007970 288 TYNILLKGYCQ----QLQIDKAKELLREMADDAKIEPDVVSYNILIDGFI----LIDDSAGALTFFNEMRARGIAPTKIS 359 (583)
Q Consensus 288 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~ 359 (583)
....+...+.. ..+.+.|...++...+. + .......+...+. .......+...+......+ +...
T Consensus 72 a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~-g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~ 144 (265)
T d1ouva_ 72 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDG 144 (265)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred hhhccccccccccccchhhHHHHHHHhhhhhh-h---hhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccch
Confidence 44555555543 46788999999888652 2 2333333333333 3456677788887776643 5667
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007970 360 YTTLMKAFAL----SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATY 431 (583)
Q Consensus 360 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~ 431 (583)
+..+...+.. ..+...+..+++...+. .+......+...|.. ..++++|+.+|.+..+.| ++..+
T Consensus 145 ~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~ 217 (265)
T d1ouva_ 145 CTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGC 217 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred hhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHH
Confidence 7777777765 45677888888887763 366677777767766 568999999999999886 45666
Q ss_pred HHHHHHHHh----cCCHhHHHHHHHHHHHH
Q 007970 432 GSLANGISL----ARKPGEALLLWKEIKER 457 (583)
Q Consensus 432 ~~l~~~~~~----~g~~~~a~~~~~~~~~~ 457 (583)
..|...|.. ..++++|.++|++....
T Consensus 218 ~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 218 FNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 677777764 34788999999998776
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.13 E-value=1.6e-05 Score=59.26 Aligned_cols=90 Identities=9% Similarity=0.034 Sum_probs=64.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007970 218 TLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYC 297 (583)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (583)
.+...+.+.|++++|+..|++.... .+-+...|..+..++.+.|++++|+..++..++.. |.+...+..+..+|.
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc----ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 4556677777788888777777765 23356777777777777777777777777777654 456677777777777
Q ss_pred hcCCHHHHHHHHHHH
Q 007970 298 QQLQIDKAKELLREM 312 (583)
Q Consensus 298 ~~~~~~~A~~~~~~~ 312 (583)
..|++++|.+.+++.
T Consensus 96 ~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 96 NEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777777665
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=5.3e-05 Score=61.28 Aligned_cols=76 Identities=16% Similarity=0.005 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+|..+..+|.+.|++++|+..++++++. .| +..++..+..+|...|++++|+..|++..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALEL------------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhc------------------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45777888899999999999999999987 66 568899999999999999999999999986
Q ss_pred cCCCCCHHHHHHHHHHh
Q 007970 508 HGIPPNKTKYKKIYVEM 524 (583)
Q Consensus 508 ~~~~p~~~~~~~~~~~~ 524 (583)
+.|+.......+..+
T Consensus 125 --l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 125 --LYPNNKAAKTQLAVC 139 (170)
T ss_dssp --HCSSCHHHHHHHHHH
T ss_pred --hCCCCHHHHHHHHHH
Confidence 567655444333333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=0.00013 Score=55.62 Aligned_cols=109 Identities=8% Similarity=-0.036 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCC
Q 007970 395 AWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPP 474 (583)
Q Consensus 395 ~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (583)
.+..+...+.+.|++++|++.|.+.++.+ +.+...+..+..+|.+.|++++|+..++++++...... .
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-----------~ 73 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-----------E 73 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-----------T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-----------H
Confidence 34567788999999999999999999863 45788999999999999999999999999987632200 0
Q ss_pred CCCC-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHH
Q 007970 475 LKPD-EELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKY 517 (583)
Q Consensus 475 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (583)
..+. ..+|..+...+...+++++|+..+++.... .|++...
T Consensus 74 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 0111 257778888999999999999999998753 4555443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.2e-05 Score=60.77 Aligned_cols=94 Identities=12% Similarity=0.006 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 007970 362 TLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGL---VEEAKRIIERMKENGFYPN-VATYGSLANG 437 (583)
Q Consensus 362 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~ 437 (583)
.++..+...+++++|.+.|++... .-+.+..++..+..++.+.++ +++|+++|+++...+..|+ ..++..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 455556666666677777766665 334556666666666665443 3346666666655422222 1245556666
Q ss_pred HHhcCCHhHHHHHHHHHHHH
Q 007970 438 ISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 438 ~~~~g~~~~a~~~~~~~~~~ 457 (583)
|.+.|++++|++.|+++++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 67777777777777777664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.08 E-value=0.0032 Score=56.11 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHc
Q 007970 61 YNAVLNACANLGKPKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVG 140 (583)
Q Consensus 61 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 140 (583)
|..++..+.+.++++.|.+++... -+..+|..+...|.+......+ .+.......++.....++..|-.
T Consensus 43 ~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~ 111 (336)
T d1b89a_ 43 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQD 111 (336)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHH
Confidence 444555555555555555544432 1344555555555544433222 11112222333344445555555
Q ss_pred CCChHHHHHHHHHH
Q 007970 141 FGDLEIAETIVQAM 154 (583)
Q Consensus 141 ~g~~~~A~~~~~~~ 154 (583)
.|.+++...+++..
T Consensus 112 ~~~~e~Li~~Le~~ 125 (336)
T d1b89a_ 112 RGYFEELITMLEAA 125 (336)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHH
Confidence 55555555555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=0.00019 Score=57.86 Aligned_cols=111 Identities=6% Similarity=-0.099 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 403 (583)
.+......+.+.|++++|+..|.+.+..-..... ....-......+ ...+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh--------HHHHHHHHHHHH
Confidence 3444555677777777777777776653110000 000000111111 124577788899
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|+..|+++.+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99999999999999999863 347888999999999999999999999999886
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.98 E-value=0.00022 Score=56.34 Aligned_cols=72 Identities=14% Similarity=0.073 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.+|..+..+|.+.|++++|+..++++++. .| +..+|..++.++...|++++|...|++..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~------------------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI------------------DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccc------------------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777888999999999999999999987 55 468999999999999999999999999986
Q ss_pred cCCCCCHHHHHHH
Q 007970 508 HGIPPNKTKYKKI 520 (583)
Q Consensus 508 ~~~~p~~~~~~~~ 520 (583)
+.|+.......
T Consensus 130 --l~P~n~~~~~~ 140 (153)
T d2fbna1 130 --LNPNNLDIRNS 140 (153)
T ss_dssp --HSTTCHHHHHH
T ss_pred --hCCCCHHHHHH
Confidence 56766554433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=0.00011 Score=55.95 Aligned_cols=103 Identities=13% Similarity=0.139 Sum_probs=79.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhHHHHHHHHhhhhcccc
Q 007970 95 TYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRRDVCKIIRELDLEDYS 174 (583)
Q Consensus 95 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (583)
.+..+...+.+.|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|+..++.+.+..+......
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~--------- 75 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY--------- 75 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHH---------
Confidence 35567778889999999999999999886 56788888899999999999999999988876443221100
Q ss_pred ccCCCCCCCcHHHHHhhcCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 007970 175 SENEGDDDDDDEVFEKLLPNSINPSSEPPLLPKTFAPNSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQ 242 (583)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 242 (583)
..-..+|..+...+...+++++|++.|......
T Consensus 76 -----------------------------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 76 -----------------------------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 011346778888999999999999999887763
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.85 E-value=0.00044 Score=54.47 Aligned_cols=112 Identities=11% Similarity=-0.086 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 007970 324 SYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGY 403 (583)
Q Consensus 324 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 403 (583)
.+......+.+.|++.+|+..|.+....- +... ............. ....+|+.+..+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~-----------~~~~~~~~~~~~~--------~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE-----------EWDDQILLDKKKN--------IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT-----------TCCCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh-----------hhhhHHHHHhhhh--------HHHHHHhhHHHHH
Confidence 44555566777788888888887776531 1100 0000000000000 1234677888999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 404 CRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 404 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
.+.|++++|++.+++.++.. +.+..+|..+..++...|++++|+..|++..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998863 457889999999999999999999999999986
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.84 E-value=0.0089 Score=53.17 Aligned_cols=24 Identities=4% Similarity=0.200 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Q 007970 479 EELLDALADICVRAAFFRKALEIV 502 (583)
Q Consensus 479 ~~~~~~l~~~~~~~g~~~~A~~~~ 502 (583)
..+.+++...|...++++.-.+.+
T Consensus 280 ~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 280 KSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhHHHHHHH
Confidence 356667777777777755433333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.81 E-value=0.00069 Score=54.31 Aligned_cols=93 Identities=13% Similarity=-0.006 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCC
Q 007970 394 VAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPP 473 (583)
Q Consensus 394 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (583)
.+|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|+..|+++.+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l---------------- 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---------------- 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----------------
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------
Confidence 456677888999999999999999998763 557788888999999999999999999998865
Q ss_pred CCCCCH-HHHHHHHHHHHhhhhHH-HHHHHHHHH
Q 007970 474 PLKPDE-ELLDALADICVRAAFFR-KALEIVACM 505 (583)
Q Consensus 474 ~~~p~~-~~~~~l~~~~~~~g~~~-~A~~~~~~~ 505 (583)
.|+. .+...+..+..+.+... ...+++..|
T Consensus 128 --~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 128 --NPQNKAARLQIFMCQKKAKEHNERDRRTYANM 159 (168)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5554 55555555544444433 344555544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.81 E-value=0.00028 Score=56.82 Aligned_cols=80 Identities=11% Similarity=-0.011 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNI 291 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 291 (583)
....|..+..++.+.|++++|+..++.+.+. -+.+..+|..+..++...|+++.|+..|+.+.+.. |.+..+...
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~ 150 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAE 150 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhh----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4556777888888999999999999888875 34567788888888888899999999988888764 445555555
Q ss_pred HHHHH
Q 007970 292 LLKGY 296 (583)
Q Consensus 292 l~~~~ 296 (583)
+..+.
T Consensus 151 l~~~~ 155 (169)
T d1ihga1 151 LLKVK 155 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.80 E-value=0.00045 Score=55.89 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CHHHHHHHHHHHHhhhhHHHHHHHHHHHH-
Q 007970 429 ATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DEELLDALADICVRAAFFRKALEIVACME- 506 (583)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 506 (583)
..+..+..++...|++++|+..++++.+. .| +...|..++.+|.+.|+..+|++.|+.+.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~------------------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFE------------------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHh------------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46777888999999999999999999987 55 55899999999999999999999999983
Q ss_pred ----HcCCCCCHHHH
Q 007970 507 ----EHGIPPNKTKY 517 (583)
Q Consensus 507 ----~~~~~p~~~~~ 517 (583)
+.|+.|.+.+-
T Consensus 130 ~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 130 TLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHHSCCCCHHHH
T ss_pred HHHHHhCCCcCHHHH
Confidence 47999998753
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.79 E-value=0.00039 Score=55.89 Aligned_cols=88 Identities=14% Similarity=0.015 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCC
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDL 471 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 471 (583)
....|..+..++.+.|++++|+..++++++.. +.+...|..+..++...|++++|+..|+++.+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l-------------- 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-------------- 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--------------
Confidence 45567788899999999999999999999863 457788999999999999999999999999986
Q ss_pred CCCCCCC-HHHHHHHHHHHHhhhhHHHH
Q 007970 472 PPPLKPD-EELLDALADICVRAAFFRKA 498 (583)
Q Consensus 472 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A 498 (583)
.|+ ..+...+..+..+.....++
T Consensus 141 ----~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 141 ----APEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 554 45565555555444444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=2.7e-05 Score=75.56 Aligned_cols=134 Identities=15% Similarity=0.005 Sum_probs=68.4
Q ss_pred cCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 226 EGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKA 305 (583)
Q Consensus 226 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 305 (583)
.+.++.|+..+....+. ..++...+..+...+.+.|+.+.|...+....... ...++..+...+...+++++|
T Consensus 99 ~~~Y~~ai~~l~~~~~l----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A 171 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNV----DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQA 171 (497)
T ss_dssp HHHHHHHHHHHTC-----------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHCC----ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHH
Confidence 34455555444443332 23345556666777777777777777776655432 234566677777888888888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 007970 306 KELLREMADDAKIEPDVVSYNILIDGFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL 369 (583)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 369 (583)
...|++..+.. +.+...|+.+...+...|+..+|+..|.+..... +|...++..|...+.+
T Consensus 172 ~~~y~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 172 ESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 88888776542 3445678888888888888888888888877763 5666777777666544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=1.9e-05 Score=76.56 Aligned_cols=257 Identities=10% Similarity=-0.012 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhcccCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 007970 231 DTVRMLGAMRRQEDNASHPD-HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANR-ITYNILLKGYCQQLQIDKAKEL 308 (583)
Q Consensus 231 ~A~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~ 308 (583)
+|.+.|++..+. .|+ ...+..+..++...+++++| |++++... |+. ..++... ..-...+..+.+.
T Consensus 4 eA~q~~~qA~~l-----~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~--~Lw~~~y~~~ie~ 71 (497)
T d1ya0a1 4 QSAQYLRQAEVL-----KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQ--DLWNHAFKNQITT 71 (497)
T ss_dssp HHHHHHHHHHHH-----HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHH--HHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHc-----CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHH--HHHHHHHHHHHHH
Confidence 678888888774 344 44566667777777777765 66665432 211 1111111 1111124456666
Q ss_pred HHHHHhcCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 007970 309 LREMADDAKIEPDVVSYNILID--GFILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRD 386 (583)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 386 (583)
++...+... .++......... .....+.++.|+..++...... +++...+..+...+.+.|+.+.|...+....+.
T Consensus 72 ~r~~~k~~~-~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 149 (497)
T d1ya0a1 72 LQGQAKNRA-NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY 149 (497)
T ss_dssp HHHHHSCSS-CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH
T ss_pred HHHhccccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC
Confidence 766654221 222222111111 1223445555555555444332 334556677777778888888888877766541
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhcccc
Q 007970 387 PRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVN 466 (583)
Q Consensus 387 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 466 (583)
....++..+...+...|++++|...|++..+. .+-+...|+.+...+...|+..+|+..|.+.+...
T Consensus 150 ----~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-------- 216 (497)
T d1ya0a1 150 ----ICQHCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-------- 216 (497)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--------
T ss_pred ----CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------
Confidence 12356777888888999999999999998875 23355788889989999999999999999888641
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhccc
Q 007970 467 ADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEEHGIPPNKTKYKKIYVEMHSRMFTSK 532 (583)
Q Consensus 467 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~ 532 (583)
+|-..++..|...+.+.....+ .....+....+...++.+.+..+...
T Consensus 217 ---------~~~~~a~~nL~~~~~~~~~~~~---------~~~~~~~~~~~~~~f~~~~~~l~~~~ 264 (497)
T d1ya0a1 217 ---------FPFPAASTNLQKALSKALESRD---------EVKTKWGVSDFIKAFIKFHGHVYLSK 264 (497)
T ss_dssp ---------BCCHHHHHHHHHHHHHHTTSCC---------CCCSSCCHHHHHHHHHHHHHHHHHTC
T ss_pred ---------CCCHHHHHHHHHHHHHhhhhhh---------hhccccccchHHHHHHHHHHHHHhCC
Confidence 4555777777766654332111 11223334444444566666655443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.68 E-value=0.0013 Score=52.60 Aligned_cols=82 Identities=9% Similarity=0.073 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007970 214 RIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRITYNILL 293 (583)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 293 (583)
.+|+.+..+|.+.|++++|+..++..... .+.+..+|..+..++...|++++|...|+.+++.. |.+..+...+-
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l----~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~ 139 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGL----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIF 139 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhc----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45667888888999999999999988876 45567888888888889999999999999888764 44555555554
Q ss_pred HHHHhcC
Q 007970 294 KGYCQQL 300 (583)
Q Consensus 294 ~~~~~~~ 300 (583)
.+....+
T Consensus 140 ~~~~~~~ 146 (168)
T d1kt1a1 140 MCQKKAK 146 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.64 E-value=0.00027 Score=55.09 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=69.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHhHHHHHHHHHHHHhhhhhccccCCCCCC
Q 007970 403 YCRMGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----------ARKPGEALLLWKEIKERCEVKKEGVNADSDLP 472 (583)
Q Consensus 403 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (583)
|-+.+.+++|++.|+...+.. +.+..++..+..+|.. .+.+++|+..|+++++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--------------- 70 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------------- 70 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---------------
Confidence 344556777777777777652 3455666666666553 34457899999999876
Q ss_pred CCCCCC-HHHHHHHHHHHHhhhh-----------HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 007970 473 PPLKPD-EELLDALADICVRAAF-----------FRKALEIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 473 ~~~~p~-~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~~ 520 (583)
.|+ ..+|..+..+|...|+ +++|.+.|++..+ +.|+...+...
T Consensus 71 ---~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~ 125 (145)
T d1zu2a1 71 ---DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKS 125 (145)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred ---cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHH
Confidence 665 4888889999877654 6899999999885 67888777655
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.63 E-value=0.00097 Score=53.85 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-----CCCCCCHH
Q 007970 213 SRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNASHPDHVTYTTVVSALVKAGSMDRARQVLAEMTR-----IGVPANRI 287 (583)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 287 (583)
...+..+..++.+.|++++|+..++.+... .+-+...|..++.++.+.|+.++|++.|+.+.+ .|+.|+..
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~----~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFE----HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 345666777777777777777777777765 345666777777777777777777777776533 46666654
Q ss_pred H
Q 007970 288 T 288 (583)
Q Consensus 288 ~ 288 (583)
+
T Consensus 143 l 143 (179)
T d2ff4a2 143 L 143 (179)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.54 E-value=0.00032 Score=54.64 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=69.7
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007970 369 LSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRM----------GLVEEAKRIIERMKENGFYPNVATYGSLANGI 438 (583)
Q Consensus 369 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 438 (583)
+.+.+++|...|+...+ ..|.+..++..+..+|... +.+++|+..|++.++.. +.+..+|..+..+|
T Consensus 9 r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 33445566666666555 2344555555555555432 34567777777777642 33566777777776
Q ss_pred HhcC-----------CHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 439 SLAR-----------KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 439 ~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
...| .+++|.+.|+++++. .|+...+...+. ....|.+++.+..+
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l------------------~P~~~~~~~~L~------~~~ka~~~~~e~~k 141 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDE------------------QPDNTHYLKSLE------MTAKAPQLHAEAYK 141 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH------------------CTTCHHHHHHHH------HHHTHHHHHHHHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhccccc------------------CCCHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 6544 367888999988876 888766654443 33556666666655
Q ss_pred cCC
Q 007970 508 HGI 510 (583)
Q Consensus 508 ~~~ 510 (583)
.|+
T Consensus 142 ~~~ 144 (145)
T d1zu2a1 142 QGL 144 (145)
T ss_dssp SSS
T ss_pred Hhc
Confidence 443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.46 E-value=0.0018 Score=50.98 Aligned_cols=103 Identities=18% Similarity=0.019 Sum_probs=75.2
Q ss_pred HHHHHH--HHHHHHcCCHHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhh
Q 007970 394 VAWNML--VEGYCRMGLVEEAKRIIERMKENG-FYPN----------VATYGSLANGISLARKPGEALLLWKEIKERCEV 460 (583)
Q Consensus 394 ~~~~~l--i~~~~~~g~~~~A~~~~~~~~~~g-~~p~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 460 (583)
.+|..+ ...+.+.|++++|++.|++.++.. -.|+ ...|+.+..+|...|++++|+..+++.++....
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 345544 455667899999999999987521 1121 457888999999999999999999998875321
Q ss_pred hhccccCCCCCCCCCCCC-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007970 461 KKEGVNADSDLPPPLKPD-----EELLDALADICVRAAFFRKALEIVACMEE 507 (583)
Q Consensus 461 ~~~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 507 (583)
.. ...++ ...+..+..+|...|++++|+..|++..+
T Consensus 88 ~~-----------~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RG-----------ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HC-----------CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cc-----------cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 11222 23567788999999999999999999854
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.25 E-value=0.00037 Score=60.38 Aligned_cols=122 Identities=9% Similarity=-0.050 Sum_probs=65.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 007970 333 ILIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEA 412 (583)
Q Consensus 333 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 412 (583)
.+.|++++|+..+++.++.. +-+...+..+...++..|++++|...|+...+. .+.+...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 45577777777777777663 445667777777777777777777777777652 223344444444433333332222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 413 KRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 413 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 211111111111112223333445566778888888888777765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.20 E-value=0.002 Score=50.64 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=65.8
Q ss_pred hHHHHHHH--HHHHhcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 007970 10 VKAWSTVV--SRLAASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEF 87 (583)
Q Consensus 10 ~~~~~~li--~~~~~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 87 (583)
..+|..+- ..+...|+ +++|+..|++.++......+.............|+.+..+|.+.|++++|+..++...+.
T Consensus 7 a~a~~~l~~g~~~~~~g~--y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~ 84 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGE--YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 84 (156)
T ss_dssp HHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhc
Confidence 45777774 45556688 999999999999864443221111001112467888888888888888888888777642
Q ss_pred -----CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 007970 88 -----GAKPD-----VLTYNVMIKLCARASRKHLLVFVLERILE 121 (583)
Q Consensus 88 -----~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 121 (583)
...++ ..++..+..+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 11334445555555666666555555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.04 E-value=0.00027 Score=61.28 Aligned_cols=122 Identities=13% Similarity=0.065 Sum_probs=83.1
Q ss_pred hcCCCChhhhHHhHHHHHHHHhhcCCccccccCCcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC-HHHHHHHH
Q 007970 22 ASGDDGPVESVKLFDVVVKRVRKFSDPDIVSDSKPDTAAYNAVLNACANLGKPKKFLQLFDQMHEFGAKPD-VLTYNVMI 100 (583)
Q Consensus 22 ~~g~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li 100 (583)
+.|+ +++|+..+++.++. .|.|...+..+...++..|++++|.+.|+...+.. |+ ...+..+.
T Consensus 8 ~~G~--l~eAl~~l~~al~~------------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~ 71 (264)
T d1zbpa1 8 SEGQ--LQQALELLIEAIKA------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLR 71 (264)
T ss_dssp TTTC--HHHHHHHHHHHHHT------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHH
T ss_pred HCCC--HHHHHHHHHHHHHH------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 4577 99999999999985 56689999999999999999999999999999854 44 33444444
Q ss_pred HHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHHHHHcCCChHHHHHHHHHHHhhhH
Q 007970 101 KLCARASRKHLLVFVLERILEMGITLCMTTFQSLVAAYVGFGDLEIAETIVQAMREGRR 159 (583)
Q Consensus 101 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 159 (583)
..+...+..+++..-.......+-+++...+......+...|+.++|.++++.+.+..+
T Consensus 72 ~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p 130 (264)
T d1zbpa1 72 HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130 (264)
T ss_dssp HHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 44433333332222111111112122334444556778889999999999998877544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.005 Score=43.36 Aligned_cols=66 Identities=15% Similarity=-0.039 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 392 DIVAWNMLVEGYCRMGLVEEAKRIIERMKEN-----GFYPN-VATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 392 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
+...+-.+...+.+.|++++|+..|++..+. ...++ ..++..+..++.+.|++++|+..++++++.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3444557788889999999999999988642 11222 567888999999999999999999999986
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.016 Score=40.54 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcccCCC--CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCHHH
Q 007970 212 NSRIYTTLMKGYMNEGRVSDTVRMLGAMRRQEDNAS--HPD-HVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRIT 288 (583)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 288 (583)
+...+..+...+.+.|++++|...|++..+..+... .++ ..++..+..++.+.|++++|+..++++++.. |-+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 344455677777778888888877777665421111 112 4556667777777777777777777777654 333444
Q ss_pred HHH
Q 007970 289 YNI 291 (583)
Q Consensus 289 ~~~ 291 (583)
++.
T Consensus 83 ~~N 85 (95)
T d1tjca_ 83 NGN 85 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.88 E-value=0.48 Score=35.01 Aligned_cols=80 Identities=6% Similarity=-0.090 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 007970 371 SQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR----MGLVEEAKRIIERMKENGFYPNVATYGSLANGISL----AR 442 (583)
Q Consensus 371 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g 442 (583)
.+.++|..++++..+. -++.....|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..
T Consensus 37 ~~~~~a~~~~~~aa~~----g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 37 INKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp SCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHhhhhcc----cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 3455566666555442 133444444444443 245666666666666654 33344444444433 33
Q ss_pred CHhHHHHHHHHHHHH
Q 007970 443 KPGEALLLWKEIKER 457 (583)
Q Consensus 443 ~~~~a~~~~~~~~~~ 457 (583)
+.++|.++|++..+.
T Consensus 110 d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 110 NEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 566666666666543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.88 E-value=0.48 Score=35.00 Aligned_cols=81 Identities=9% Similarity=0.012 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH----cC
Q 007970 336 DDSAGALTFFNEMRARGIAPTKISYTTLMKAFAL----SSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCR----MG 407 (583)
Q Consensus 336 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 407 (583)
.+.++|+.++++..+.| +...+..|...|.. ..+.++|.++|++..+. + ++.....|...|.. ..
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-N---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc-C---cchHHHHHHHHHHcCCccCC
Confidence 45556666666665554 33344444444432 34566777777776552 2 34444455555554 34
Q ss_pred CHHHHHHHHHHHHHCC
Q 007970 408 LVEEAKRIIERMKENG 423 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g 423 (583)
+.++|.++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6777777777777665
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.68 E-value=0.47 Score=33.93 Aligned_cols=138 Identities=14% Similarity=0.032 Sum_probs=70.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 007970 334 LIDDSAGALTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAK 413 (583)
Q Consensus 334 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 413 (583)
..|..++..+++.+.... .+..-|+-+|.-....-+-+...++++.+-+.+.+.|-.. ...++.++...+
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n------ 83 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINN------ 83 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTT------
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhc------
Confidence 345556666666555543 1344444444444444454555555555544222221110 112222222222
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 007970 414 RIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKPDEELLDALADICVRAA 493 (583)
Q Consensus 414 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 493 (583)
.+...++..+..+..+|+-++-.++++.+.+.. +|+......+..+|.+.|
T Consensus 84 ------------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-----------------~i~~~~llkia~A~kkig 134 (161)
T d1wy6a1 84 ------------TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-----------------EVSASILVAIANALRRVG 134 (161)
T ss_dssp ------------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-----------------CSCHHHHHHHHHHHHHTT
T ss_pred ------------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHhc
Confidence 123344555555666666666666666654431 566666666677777777
Q ss_pred hHHHHHHHHHHHHHcCC
Q 007970 494 FFRKALEIVACMEEHGI 510 (583)
Q Consensus 494 ~~~~A~~~~~~~~~~~~ 510 (583)
...++-+++.+.-+.|+
T Consensus 135 ~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 135 DERDATTLLIEACKKGE 151 (161)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred chhhHHHHHHHHHHHhH
Confidence 77777777777666664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.37 E-value=0.46 Score=34.27 Aligned_cols=76 Identities=14% Similarity=0.106 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHHHhhhhhccccCCCCCCCCCCC-CH-HHHHHHHHHHHhhhhHHHHH
Q 007970 425 YPNVATYGSLANGISLAR---KPGEALLLWKEIKERCEVKKEGVNADSDLPPPLKP-DE-ELLDALADICVRAAFFRKAL 499 (583)
Q Consensus 425 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~ 499 (583)
.|...|--.+..++.++. +.++++.+++.+.+. .| +. ..+..|..+|.+.|++++|.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~------------------~p~~~rd~lY~Lav~yyklgdy~~A~ 93 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE------------------AESRRRECLYYLTIGCYKLGEYSMAK 93 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH------------------CGGGHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc------------------CchhHHHHHHHHHHHHHHHhhHHHHH
Confidence 456666666777777654 456788888888765 44 33 57777888899999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHH
Q 007970 500 EIVACMEEHGIPPNKTKYKKI 520 (583)
Q Consensus 500 ~~~~~~~~~~~~p~~~~~~~~ 520 (583)
+.++.+.+ +.|+..-...+
T Consensus 94 ~~~~~~L~--ieP~n~qA~~L 112 (124)
T d2pqrb1 94 RYVDTLFE--HERNNKQVGAL 112 (124)
T ss_dssp HHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHHHHc--cCCCcHHHHHH
Confidence 99999885 56766544433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.17 E-value=1.4 Score=31.51 Aligned_cols=140 Identities=10% Similarity=0.135 Sum_probs=88.9
Q ss_pred HHcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007970 262 VKAGSMDRARQVLAEMTRIGVPANRITYNILLKGYCQQLQIDKAKELLREMADDAKIEPDVVSYNILIDGFILIDDSAGA 341 (583)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 341 (583)
.-.|..++..+++.+..+. .+..-+|.++--....-+-+-..++++.+-+...+ ...++....
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl--------------s~C~Nlk~v 75 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 75 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCc--------------hhhhcHHHH
Confidence 3457777777777777764 34555666655555555555566666655332111 122333333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 007970 342 LTFFNEMRARGIAPTKISYTTLMKAFALSSQPKLANKVFDEMLRDPRVKVDIVAWNMLVEGYCRMGLVEEAKRIIERMKE 421 (583)
Q Consensus 342 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 421 (583)
...+-.+ ..++..+...++.+.+.|+-++-.++++.+.+ .-++++...-.+..+|.+.|...++-+++.++-+
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~k--n~~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3333221 22445667777788888888888888888766 4567777778888888888888888888888888
Q ss_pred CCCC
Q 007970 422 NGFY 425 (583)
Q Consensus 422 ~g~~ 425 (583)
.|++
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 7754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.96 E-value=1.9 Score=30.86 Aligned_cols=66 Identities=11% Similarity=-0.059 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHHH
Q 007970 391 VDIVAWNMLVEGYCRMGL---VEEAKRIIERMKENGFYPNV-ATYGSLANGISLARKPGEALLLWKEIKER 457 (583)
Q Consensus 391 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 457 (583)
++..+--....++++..+ .++++.+|+++.+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 455555556666665543 456777777776542 2232 35556666777888888888888887765
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.25 E-value=1.5 Score=29.59 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHh
Q 007970 408 LVEEAKRIIERMKENGFYPNVATYGSLANGISLARKPGEALLLWKEIKERC 458 (583)
Q Consensus 408 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 458 (583)
+.-++.+-++.+......|++....+.+++|.+.+++..|+++++....+.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~ 71 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 71 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 455666677777767778888888888888888888888888888777653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.98 E-value=2.7 Score=28.34 Aligned_cols=62 Identities=10% Similarity=0.175 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhCCCcchhHHHHHHH
Q 007970 74 PKKFLQLFDQMHEFGAKPDVLTYNVMIKLCARASRKHLLVFVLERILEMGITLCMTTFQSLVA 136 (583)
Q Consensus 74 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 136 (583)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.+.... .++...|..+++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 34566677777777888999999999999999999999999998887653 334556655443
|