Citrus Sinensis ID: 007992

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580--
Protein Sequence
MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD
Secondary Structure (PSIPRED)
cccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHccEEEEEEEccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHcccccccccccHHHHHccccccccccccccccccHHHHHHHcccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHcHHHccccHHHHHHccccccEEEEEEcccccHHHcccccccccccccccccccEcccccccccccHHHcHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcHccccccccccccccHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHHcccEEEEEccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccHHHcccccccccccccccccccHHcccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mfgtrnmqKQCFKTLSCllqsnscsiiknvtllkdvspklvssnmirptthfcddnrfsftplnypfnrwsramstskrgrsmRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKkyelpelppsvhdpelftpeQLQAYKKigfrnknyvpvgvrGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMfrgrnyrqpknlipfnTLTKRKALFKARFEQALESQKLNIKKIEQQLRrmgtnpedpvAMASIQRVASTFFnaidqkegspyvfrgerevsvvepgkrieeseppvdsdqEELDKFIAEIEDAADKEWAEEEEAEKEELTRIRYWDreeiggrfrrsenfrnsdmddisrrtvgwkdnrakkriidsddehdssdvrngsdlqsdaydsdeahdEFNRSRVERRKQEKFGrareyegrkrnveadfsrkmtnedsesenMFSDVENAmwksesedehdsrasraeanhnymsssddedeFYATVgnkkngmnefeseadsseaHNKVNNRLNKTQKEADEAWDSD
Flexible Loop (DISEMBL)
mfgtrnmqkQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMirptthfcddnrfsftplnypfnrwsramstskrgrsmrskverrmqkesgktmreirrakkikkklmtdeeRLIYNLKRAKKKVALLLQKLKKyelpelppsvhdpeLFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAIDqkegspyvfrgerevsvvepgkrieeseppvdsdqeeLDKFIAEIEDAAdkewaeeeeaekeeltrirywdreeiggrfrrsenfrnsdmddisrrtvgwkdnrakkriidsddehdssdvrngsdlqsdaydsdeahdefnrsrverrkqekfgrareyegrkrnveadfsrkmtnedsesenmfSDVENAMWKSESEDEHDSRASRAEAnhnymsssddedEFYATVGNKKNGMNEFESeadsseahnkvnnrlnktqkeadeawdsd
Low Complexity Region (SEG)
MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAkkikkkLMTDEERLIYNlkrakkkvalllqklkkYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYvpvgvrgvfggvvQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFiaeiedaadkewaeeeeaekeeLTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIdsddehdssdVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD
Disordered region (IsUnstruct)
*********QCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRW**********************************************ERLIYNLKRAKKKVALLLQKLKKYELPEL***VHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQAL*****************************IQRVASTFFNAIDQ*****YVF********************************************************RIRYWDREEI***************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**********************************DVSPKLVSSN*I*************************************************************************************************************TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLI***TLT*********************KKI**QL**********************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRWSRA***************************EIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPG***************ELDKFIAEIEDAADK************LTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDS**********NGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEADFSRK***********FSDVENA****************AEANHNYMSSSDDEDEFYATVGNKKNGMNE**********HNKVNNRLNKT***********
Disordered Region (DISPRO)
MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRWSRAMS*S*****************SGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYEL*********PELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAIDQKEGSP*V*R**************************ELDKFIAEIEDAADKEWAEEEEAEK*ELTRI*Y*D*EEI***************************************************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFxxxxxxxxxxxxxxxxxxxxxxxxxxxxPEDPVAMASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPxxxxxxxxxxxxxxxxxxxxxEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	582	2.2.26 [Sep-21-2011]
Q67XL4	444	Uncharacterized CRM domai	no	no	0.309	0.405	0.450	1e-41
Q6YYA3	725	Chloroplastic group IIA i	no	no	0.190	0.153	0.403	9e-17
Q9FYT6	715	Chloroplastic group IIA i	N/A	no	0.190	0.155	0.368	7e-14
Q9LF10	720	Chloroplastic group IIA i	no	no	0.214	0.173	0.341	1e-13
Q84N48	611	CRS2-associated factor 2,	N/A	no	0.152	0.145	0.282	6e-05
Q6Z4U2	428	CRS2-associated factor 1,	no	no	0.176	0.240	0.247	0.0002
Q0J7J7	366	CRS2-associated factor 2,	no	no	0.176	0.281	0.342	0.0005

>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1

 Score =  171 bits (434), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/182 (45%), Positives = 123/182 (67%), Gaps = 2/182 (1%)

Query: 113 MTDEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKN 172
           MT EE+++  L++A+KK   L++ +KK E  E   + HDPE+ TPE+   Y K+G + KN
Sbjct: 135 MTSEEKILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKN 194

Query: 173 YVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV 232
           YVPVG RG++ GV+ NMHLHWK H+T+QV    F  +++KE+A  +ARL+GGIV+++H  
Sbjct: 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEG 254

Query: 233 KTIIMFRGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTN 290
            TIIM+RG+NY QP   I  P  TL ++KAL K++   AL + +  I ++EQ+L+ +   
Sbjct: 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314

Query: 291 PE 292
            E
Sbjct: 315 AE 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1

 Score = 89.0 bits (219), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 3/114 (2%)

Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
           D EL T E+ + ++KIG +   +V +G RGVF GV++ +H HWK  E V+V        +
Sbjct: 562 DRELLTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQ 621

Query: 211 IKEMATMIARLSGGIVINIHNVKT---IIMFRGRNYRQPKNLIPFNTLTKRKAL 261
           I   + M+   +GG +I I    T   II++RG+NYR+P    P N LTKR+AL
Sbjct: 622 ITYTSMMLEVETGGTLIAIERFTTSHAIILYRGKNYRRPTKSAPSNLLTKREAL 675

Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
           D E  T E+   +++IG +    V +G RG+F GV++ +H HWK  E V+V        +
Sbjct: 560 DREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQ 619

Query: 211 IKEMATMIARLSGGIVINIHNVKT---IIMFRGRNYRQPKNLIPFNTLTKRKAL 261
           I   A+++   +GGI+I +  + T   II++RG+NYR+P      N LTKR+AL
Sbjct: 620 IMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLLTKREAL 673

Required for the splicing of group IIA introns in chloroplasts, and especially for atpF, by regulating the intron folding. Forms splicing particles with RNA. Also involved in chloroplast protein translation.

Zea mays (taxid: 4577)

>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 74/129 (57%), Gaps = 4/129 (3%)

Query: 151 DPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEK 210
           D E+ T E+ +  ++IG +  + + +G RGVF GV++ +H HWK  E  +V        +
Sbjct: 568 DIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSR 627

Query: 211 IKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKN-LIPFNTLTKRKALFKARF 266
           +   A  +   S G++I+I  +K    I+++RG+NY++P + L+  N LTKRKAL ++  
Sbjct: 628 VVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVV 687

Query: 267 EQALESQKL 275
            Q L S K 
Sbjct: 688 MQRLGSLKF 696

Required for the splicing of group IIA introns in chloroplasts, by regulating the intron folding. Forms splicing particles with RNA. May also be involved in chloroplast protein translation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 153 ELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIK 212
           E  TP +++A  K    +   + +G  G+   +++ +H HW+  E  +V C   P   +K
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMK 291

Query: 213 EMATMIARLSGGIVINIHNVKTII-MFRGRNY 243
            +   +   SGG V  IH V  ++ ++RGR+Y
Sbjct: 292 NLCYHLEEKSGGKV--IHRVGGVVFLYRGRHY 321

Required for the splicing of group IIB introns in chloroplasts. Forms splicing particles with CRS2. Interacts with RNA and confers intron specificity of the splicing particles.

Zea mays (taxid: 4577)

>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0174900 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 169 RNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVIN 228
           R K  + +G  G+   ++ ++H HWK  E V+V C   P   ++ +   +   +GG++I+
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232

Query: 229 IHNVKTIIMFRGRNYRQPKN-LIPFNTLTKRKALFKARFEQALES 272
            H  + +I++RGR+Y   K  +IP       + ++    +  +E 
Sbjct: 233 RHGGQ-LILYRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEG 276

May be involved for the splicing of group IIB introns in mitochondrions.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os08g0188000 PE=2 SV=2

 Score = 47.0 bits (110), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 11/114 (9%)

Query: 183 GGVVQNM----HLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMF 238
           GGV  NM    H HWK  E V++ C   P   +  +   +   +GG VI   N+  +I++
Sbjct: 171 GGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVI-YRNINILILY 229

Query: 239 RGRNYRQPKN--LIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTN 290
           RGRNY  PK    IP   L K  A    R  Q + +  L  +K  ++LR  G N
Sbjct: 230 RGRNY-DPKQRPQIPL-MLWKPLAPIYPRLVQNV-ADGLTFEK-TKELRNTGLN 279

May be involved for the splicing of group IIB introns in mitochondrions.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	582
356513969	653	PREDICTED: uncharacterized protein LOC10	0.943	0.840	0.644	0.0
359488800	666	PREDICTED: uncharacterized protein LOC10	0.905	0.791	0.665	1e-180
356573355	653	PREDICTED: uncharacterized protein LOC10	0.984	0.877	0.595	1e-177
296087592	545	unnamed protein product [Vitis vinifera]	0.914	0.976	0.623	1e-175
255560940	745	conserved hypothetical protein [Ricinus	0.855	0.668	0.696	1e-169
224055583	496	predicted protein [Populus trichocarpa]	0.838	0.983	0.680	1e-164
449450187	619	PREDICTED: uncharacterized protein LOC10	0.953	0.896	0.586	1e-161
449483922	619	PREDICTED: uncharacterized protein LOC10	0.953	0.896	0.586	1e-160
297818350	488	hypothetical protein ARALYDRAFT_484545 [	0.828	0.987	0.623	1e-143
15232195	491	RNA-binding CRS1 / YhbY (CRM) domain pro	0.592	0.702	0.794	1e-135

>gi|356513969|ref|XP_003525680.1| PREDICTED: uncharacterized protein LOC100780131 [Glycine max]

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/582 (64%), Positives = 437/582 (75%), Gaps = 33/582 (5%)

Query: 1   MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTH----FCDDN 56
           MF  RN+ + CFK LS LLQ  S ++ KNV L   ++P+  ++  +    H    +C   
Sbjct: 1   MFAARNLPRHCFKPLSSLLQLQS-NLDKNV-LPSGLTPECGNTVKVEEAYHRVGLYC--- 55

Query: 57  RFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDE 116
                 LN      SRAMSTSK GRSMRSKVERRMQKESGKT+REIRRAKK+KKKLMT+E
Sbjct: 56  --YVKQLNLLNGSLSRAMSTSK-GRSMRSKVERRMQKESGKTLREIRRAKKLKKKLMTEE 112

Query: 117 ERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPV 176
           ERLIYNLKRAKKKVALLLQKLKKYELPELPP  HDPEL TPEQLQAYKKIGFRNKNYVPV
Sbjct: 113 ERLIYNLKRAKKKVALLLQKLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNKNYVPV 172

Query: 177 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTII 236
           GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA+M+ARLSGGIVIN+HNVKTII
Sbjct: 173 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTII 232

Query: 237 MFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVA 296
           MFRGRNYRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMG NPEDP A
Sbjct: 233 MFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGVNPEDPAA 292

Query: 297 MASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAE 356
           MASIQRVASTFFNAIDQKEGSPYVFR E + S++EP +  EESEP  DSDQEELD+FIAE
Sbjct: 293 MASIQRVASTFFNAIDQKEGSPYVFR-EGKQSIIEPAEGFEESEPTADSDQEELDRFIAE 351

Query: 357 IEDAADKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNR 416
           IEDAADKE+  EE  EKEE  RIRYW++EE GGR+RRS++ RN D D  +R +  W    
Sbjct: 352 IEDAADKEYEAEEAKEKEEFGRIRYWNKEEFGGRYRRSDSSRNDDHDVEARGSRVWNTTH 411

Query: 417 AKKRIIDSDDEHDS-----------------SDVRNGSDLQSDAYDSDEAHDEFNRSRVE 459
            K+  IDSDDE ++                 +++ + SDL S++ +SD    +F  SR +
Sbjct: 412 PKRHAIDSDDEENAHSDNDDDDDDEEEEWHFNNIADASDLDSNSDESDGTRGKFKESRRK 471

Query: 460 RRKQEK--FGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSR 517
           R KQ     GRAR+ E   R+  A+F R M  +DSESE M SDVENAMW+SE E++ ++ 
Sbjct: 472 REKQNNPGIGRARDDESSNRHAGANFRRNMAIKDSESEGMLSDVENAMWESEDEEQENND 531

Query: 518 ASRA-EANHNYMSSSDDEDEFYATVGNKKNGMNEFESEADSS 558
           +    + + NY SSS D++  + T+ NKK+G+ + ES+   S
Sbjct: 532 SGHLRKFSGNYRSSSSDDEYAHQTMSNKKSGVRDHESKVGGS 573

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488800|ref|XP_002272412.2| PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera]

 Score =  636 bits (1641), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 366/550 (66%), Positives = 432/550 (78%), Gaps = 23/550 (4%)

Query: 27  IKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRWSRAMSTSKRGRSMRSK 86
            +NV   + V  K +SSN I+ +    +D   S +P N  F+ WSRAMST+  GRSMRSK
Sbjct: 9   FRNVVSRRYVPLKCLSSNPIQSSAG-SEDCSSSISPWN-GFSGWSRAMSTAG-GRSMRSK 65

Query: 87  VERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKKYELPELP 146
           VERRM+KESGKT+RE+RRA+K++KKLMTDEERLIYNL+RAKKKVALLLQKLKKYELPELP
Sbjct: 66  VERRMRKESGKTLREVRRAQKLRKKLMTDEERLIYNLRRAKKKVALLLQKLKKYELPELP 125

Query: 147 PSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNF 206
              HDPEL T EQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNF
Sbjct: 126 APRHDPELLTAEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNF 185

Query: 207 PKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARF 266
           PKEKIKEMATM+ARLSGGIVIN+H+VKTIIMFRGRNYRQPKNLIP NTLTKRKALFKARF
Sbjct: 186 PKEKIKEMATMLARLSGGIVINVHDVKTIIMFRGRNYRQPKNLIPINTLTKRKALFKARF 245

Query: 267 EQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAIDQKEGSPYVFRGERE 326
           EQAL+SQKLNIKKIEQQLRRMG NPEDPVAMASIQRVASTFFNAID++EGSPYVF+G++ 
Sbjct: 246 EQALDSQKLNIKKIEQQLRRMGVNPEDPVAMASIQRVASTFFNAIDKQEGSPYVFQGDKL 305

Query: 327 VSVVEPGKRIEES-EPPVDSDQEELDKFIAEIEDAADKEWAEEEEAEKEELTRIRYWDRE 385
                P + ++ S EPPVDSDQEELD+FIAEIEDAADKEWA EE AEKEEL+++RYW+RE
Sbjct: 306 FGAA-PTEDLKLSEEPPVDSDQEELDQFIAEIEDAADKEWAVEEAAEKEELSKMRYWNRE 364

Query: 386 EIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEH----------DSSDVRN 435
           E  GRFRR +N +N D D   R   GW   R ++R  D+DDE           DS+DVR+
Sbjct: 365 EFAGRFRRFDNPKNEDFDSDVRGARGWNHTRGRQRTTDTDDEGNDVSEGDEEWDSNDVRD 424

Query: 436 GSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGR--KRNVEADFSRKMTNEDSE 493
               +SD  DSDE H+EF   R++  K + FGRA+    +  KRN E +F RK+  EDS 
Sbjct: 425 LRTPESDGDDSDEVHNEFTAPRMQSGKLD-FGRAKNNNSKDFKRNAE-EFRRKVDEEDSG 482

Query: 494 SENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATVGNKKNG---MNE 550
           SE+M  D+ENAMW+S++E+EHDSR SR  +N +Y SSSDD++  +    + KN    +N+
Sbjct: 483 SEDMLDDLENAMWESDAEEEHDSRTSRMASN-DYRSSSDDDEHLHRIKRDSKNARNLVND 541

Query: 551 FESEADSSEA 560
            E++AD SE+
Sbjct: 542 HENDADYSES 551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573355|ref|XP_003554827.1| PREDICTED: uncharacterized protein LOC100782246 [Glycine max]

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 394/662 (59%), Positives = 454/662 (68%), Gaps = 89/662 (13%)

Query: 1   MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSF 60
           MFG RN+Q+ CFK LS LLQ  S ++ KNV  L   +P+   SN I+    +     + F
Sbjct: 1   MFGARNLQRHCFKPLSSLLQLQS-NLYKNVVPLGH-TPEC--SNTIKVEEEYHRVGLYCF 56

Query: 61  TP----LNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDE 116
                 LN P    SRAMSTSK GRSMRSKVERRMQKESGKT+REIRRAKK+KKKLMT+E
Sbjct: 57  VKQLNLLNGPL---SRAMSTSK-GRSMRSKVERRMQKESGKTLREIRRAKKLKKKLMTEE 112

Query: 117 ERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPV 176
           ERLIYNLKRAKKKVALLLQKLKKYELPELP   HDPEL TPEQLQAYKKIGFRNKNYVPV
Sbjct: 113 ERLIYNLKRAKKKVALLLQKLKKYELPELPHPRHDPELLTPEQLQAYKKIGFRNKNYVPV 172

Query: 177 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTII 236
           GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA+M+ARLSGGIVIN+HNVKTII
Sbjct: 173 GVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTII 232

Query: 237 MFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVA 296
           MFRGRNYRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMG NPEDP A
Sbjct: 233 MFRGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGVNPEDPAA 292

Query: 297 MASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAE 356
           MASIQRVASTFFNAIDQKEGSPYVFR E + S+ EP +  EESEP  DSDQEELD+FIAE
Sbjct: 293 MASIQRVASTFFNAIDQKEGSPYVFR-EGKQSITEPAEGFEESEPIADSDQEELDRFIAE 351

Query: 357 IEDAADKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNR 416
           IEDAADKE+  EE  EKEE  RIRYW++EE GGR+RRS+   N D D  +R +  W+   
Sbjct: 352 IEDAADKEYEAEEAKEKEEFGRIRYWNKEEFGGRYRRSDASTNDDRDVEARGSRVWQTTH 411

Query: 417 AKKRIIDSDDEHDS---------------SDVRNGSDLQSDAYDSDEAHDEFNRSRVERR 461
            K+  +DSDDE ++               ++  + SDL S++  SD     F  SR +R 
Sbjct: 412 PKRHAVDSDDEENTHSDNDDDDEEEEWHFNNSADASDLDSNSEGSDGTRRRFKESRRKRE 471

Query: 462 KQEK--FGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRAS 519
           KQ     GRAR+ E   R+  A F   MT EDSESE M SDVENAMW+SE E++ ++ + 
Sbjct: 472 KQNNPGIGRARDNESSSRHAGAKFRGNMTVEDSESEGMLSDVENAMWESEDEEQENNDSG 531

Query: 520 --------------RAEANHNYMS---------------SSDDEDEFYA--TVGNKKNGM 548
                           E  H  MS               S+   D F A  +V  KK+G+
Sbjct: 532 YLRKLSDSYKSSSSDDEYAHQTMSNKKSGARDHEGKVGGSAQYHDSFDAPKSVRGKKHGV 591

Query: 549 NEFESE--------------ADSSE----------AHNKVNNRLNKTQ----KEADEAWD 580
           N+ +SE              +D++E          ++N + + + K+Q    KEADEAWD
Sbjct: 592 NKIDSESIDEFSCSENWLWPSDAAEETGDYPTNQNSNNVIKSDIPKSQRRTLKEADEAWD 651

Query: 581 SD 582
           SD
Sbjct: 652 SD 653

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087592|emb|CBI34848.3| unnamed protein product [Vitis vinifera]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 371/595 (62%), Positives = 441/595 (74%), Gaps = 63/595 (10%)

Query: 1   MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSF 60
           M   RN+Q++  KTLS LLQS+     KNV   + V  K +SSN I+ ++   +D   S 
Sbjct: 1   MSIVRNLQRRSLKTLSSLLQSHP---YKNVVSRRYVPLKCLSSNPIQ-SSAGSEDCSSSI 56

Query: 61  TPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLI 120
           +P N  F+ WSRAMST+  GRSMRSKVERRM+KESGKT+RE+RRA+K++KKLMTDEERLI
Sbjct: 57  SPWN-GFSGWSRAMSTAG-GRSMRSKVERRMRKESGKTLREVRRAQKLRKKLMTDEERLI 114

Query: 121 YNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRG 180
           YNL+RAKKKVALLLQKLKKYELPELP   HDPEL T EQLQAYKKIGFRNKNYVPVGVRG
Sbjct: 115 YNLRRAKKKVALLLQKLKKYELPELPAPRHDPELLTAEQLQAYKKIGFRNKNYVPVGVRG 174

Query: 181 VFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRG 240
           VFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIVIN+H+VKTIIMFRG
Sbjct: 175 VFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTIIMFRG 234

Query: 241 RNYRQPKNLIPFNTLTKRK----------ALFKARFEQALESQKLNIKKIEQQLRRMGTN 290
           RNYRQPKNLIP NTLTKRK          ALFKARFEQAL+SQKLNIKKIEQQLRRMG N
Sbjct: 235 RNYRQPKNLIPINTLTKRKATATKKAKEAALFKARFEQALDSQKLNIKKIEQQLRRMGVN 294

Query: 291 PEDPVAMASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEES-EPPVDSDQEE 349
           PEDPVAMASIQRVASTFFNAID++EGSPYVF+G++      P + ++ S EPPVDSDQEE
Sbjct: 295 PEDPVAMASIQRVASTFFNAIDKQEGSPYVFQGDKLFGAA-PTEDLKLSEEPPVDSDQEE 353

Query: 350 LDKFIAEIEDAADKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRT 409
           LD+FIAEIEDAADKEWA EE AEKEEL+++RYW+REE  GR R ++   + + +D+S   
Sbjct: 354 LDQFIAEIEDAADKEWAVEEAAEKEELSKMRYWNREEFAGRQRTTDT--DDEGNDVS--- 408

Query: 410 VGWKDNRAKKRIIDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRA 469
                        + D+E DS+DVR+    +SD  DSDE H+EF   R++  K + FGRA
Sbjct: 409 -------------EGDEEWDSNDVRDLRTPESDGDDSDEVHNEFTAPRMQSGKLD-FGRA 454

Query: 470 REYEGR--KRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNY 527
           +    +  KRN E +F RK+  EDS SE+M  D+ENAMW+S++E+EHDSR SR  +N +Y
Sbjct: 455 KNNNSKDFKRNAE-EFRRKVDEEDSGSEDMLDDLENAMWESDAEEEHDSRTSRMASN-DY 512

Query: 528 MSSSDDEDEFYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD 582
            SSSDD++  +                        K +N+  KT K+ DE WDSD
Sbjct: 513 RSSSDDDEHLHRI----------------------KRDNKRMKTPKQVDETWDSD 545

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560940|ref|XP_002521483.1| conserved hypothetical protein [Ricinus communis] gi|223539382|gb|EEF40973.1| conserved hypothetical protein [Ricinus communis]

 Score =  603 bits (1554), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 356/511 (69%), Positives = 399/511 (78%), Gaps = 13/511 (2%)

Query: 1   MFGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDV-SPKLVSSNMIRPTTHFCDDNRFS 59
           MF  R     CFKTLS LL SN     +N  L+KDV S KL   N+++     C+    S
Sbjct: 1   MFAARRFHSHCFKTLSSLLLSNPN---RNAMLVKDVTSTKLACINLMQQNVS-CEYGFPS 56

Query: 60  FTPLNYPFNRWS-RAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEER 118
           F PL++PFN  S R MSTSK GRSMRSKVERRMQKESGKT+REIRRAKK+KKKLMTDEER
Sbjct: 57  FLPLDHPFNNGSCRGMSTSK-GRSMRSKVERRMQKESGKTLREIRRAKKLKKKLMTDEER 115

Query: 119 LIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGV 178
           LIYNLKRAKKKVALLLQKLKKYELPELPP +HDPELFT EQLQAYKKIGFRN+NYVPVGV
Sbjct: 116 LIYNLKRAKKKVALLLQKLKKYELPELPPPLHDPELFTSEQLQAYKKIGFRNRNYVPVGV 175

Query: 179 RGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMF 238
           RGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIVINIHNVKTIIMF
Sbjct: 176 RGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINIHNVKTIIMF 235

Query: 239 RGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMA 298
           RGRNYRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMG NPEDPVAMA
Sbjct: 236 RGRNYRQPKNLIPINTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGVNPEDPVAMA 295

Query: 299 SIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAEIE 358
           SIQRVASTFFNAID+KEGSPYVF+G+++  V +P   +E  EP  DSDQEELD+FIAEIE
Sbjct: 296 SIQRVASTFFNAIDKKEGSPYVFQGDKQ-PVAQPIDDMEHPEPAADSDQEELDRFIAEIE 354

Query: 359 DAADKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKD---- 414
           DAADKEWA EE AE+EE  +IRYW++E+ GGR RRSE  R++  +   R    WKD    
Sbjct: 355 DAADKEWAAEEAAEQEEFGKIRYWNKEDFGGRVRRSEMHRSAASEGEERGAGRWKDAHDR 414

Query: 415 -NRAKKRIIDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYE 473
                +   + D + DS DV   +DL+S+  DSDE     NRSR    KQ   GR    +
Sbjct: 415 RRNDDRDDDNDDGQWDSDDVEISNDLESETDDSDEVLGVENRSRGVHTKQNGVGRDYNTK 474

Query: 474 GRKRNVEADFSRKMTNEDSESENMFSDVENA 504
           G +RN EA F R++  EDS+SE M SD+++A
Sbjct: 475 GFRRNAEAKFQREVVKEDSKSEYMLSDLDSA 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055583|ref|XP_002298551.1| predicted protein [Populus trichocarpa] gi|222845809|gb|EEE83356.1| predicted protein [Populus trichocarpa]

 Score =  585 bits (1508), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 352/517 (68%), Positives = 399/517 (77%), Gaps = 29/517 (5%)

Query: 74  MSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALL 133
           MSTSK GRSMRSKVERRM+KESGKT+REIRRAKK+KKKLMTDEERLIYNLKRAKKKVALL
Sbjct: 1   MSTSK-GRSMRSKVERRMRKESGKTLREIRRAKKLKKKLMTDEERLIYNLKRAKKKVALL 59

Query: 134 LQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHW 193
           LQKLKKY+LPELP  +HDPEL TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMH+HW
Sbjct: 60  LQKLKKYDLPELPSPLHDPELLTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHMHW 119

Query: 194 KFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFN 253
           KFHETVQV CDNFPKEKIKEMATMIARLSGGIV+N+HNVKTIIMFRGRNYRQPK+LIP N
Sbjct: 120 KFHETVQVSCDNFPKEKIKEMATMIARLSGGIVVNVHNVKTIIMFRGRNYRQPKDLIPLN 179

Query: 254 TLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAIDQ 313
           TLTKRKALFKARFEQALESQKLNIK+IEQQLRRMG NPEDPVAMASIQRVASTFFNAID+
Sbjct: 180 TLTKRKALFKARFEQALESQKLNIKQIEQQLRRMGVNPEDPVAMASIQRVASTFFNAIDK 239

Query: 314 KEGSPYVFRGEREVSVVEPGKRIEESEPPVD-SDQEELDKFIAEIEDAADKEWAEEEEAE 372
           KEGSPYVF G++  S+VEP   +E  EPP D SDQEELD+FIAEIEDAAD+EWA EE AE
Sbjct: 240 KEGSPYVFHGDK-GSMVEPHDHLEHLEPPADESDQEELDRFIAEIEDAADQEWAAEEAAE 298

Query: 373 KEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEHDSSD 432
           KEE  RIRYW+RE+ GGR R  E  R+   D  +R    W+D R K+   + DD+ D S+
Sbjct: 299 KEEFGRIRYWNREDYGGRIRSPEIHRSEVSDGEARGARHWRDARDKRMSSNRDDDSDVSE 358

Query: 433 ------VRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEADFSRK 486
                 VR+ SD           H+        RRKQ+  GR       KR  E +F  K
Sbjct: 359 GDNEWNVRDNSD-----------HERL------RRKQDGIGREYNAHDIKRKFEPEFKEK 401

Query: 487 MTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATVGNKKN 546
           M  EDSESE M SD++NAMW+S++E+EH SR SRAEA+  + SSSDDE++ Y    N+  
Sbjct: 402 MAEEDSESEEMLSDLDNAMWQSDAEEEHVSRTSRAEASPIFKSSSDDEEDTYPLKRNEIT 461

Query: 547 GMNEFESEADSSEAHNKVNNRL-NKTQKEADEAWDSD 582
            + + +S+A   E   K++  L  K   E DE WDSD
Sbjct: 462 RVTDPQSDAARDEF--KISRSLKQKNGVEVDETWDSD 496

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450187|ref|XP_004142845.1| PREDICTED: uncharacterized protein LOC101215761 [Cucumis sativus]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 352/600 (58%), Positives = 431/600 (71%), Gaps = 45/600 (7%)

Query: 12  FKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRWS 71
           F  +S LL SN  +   +V L  D + + VS N+   + H  +    S + +  PFN   
Sbjct: 11  FSRVSNLLLSNRYN---SVILSTDCNSEAVSCNVGHRSIH-GEYVLPSTSKVVGPFNGLV 66

Query: 72  RAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVA 131
           R MSTSK GRSMRSKVERRM+KESGKT+REIRRAKKIKKKLMT+EERL+YNLKRAKKKVA
Sbjct: 67  RCMSTSK-GRSMRSKVERRMRKESGKTLREIRRAKKIKKKLMTEEERLLYNLKRAKKKVA 125

Query: 132 LLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHL 191
           LLLQ+LKKYELPELPP  HDPEL TPEQLQAYKKIGFRN+NYVPVGVRGVFGGVVQNMHL
Sbjct: 126 LLLQQLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHL 185

Query: 192 HWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIP 251
           HWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIV+NIH+VKTIIMFRGRNYRQPKNLIP
Sbjct: 186 HWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVKTIIMFRGRNYRQPKNLIP 245

Query: 252 FNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAI 311
            NTLTKRKALFKARFEQAL+SQKLNIKKIEQ+LRR G NPEDPVAMASIQRVASTFFNAI
Sbjct: 246 INTLTKRKALFKARFEQALDSQKLNIKKIEQELRRKGINPEDPVAMASIQRVASTFFNAI 305

Query: 312 DQKEGSPYVFRGERE-VSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWAEEEE 370
           D+KEG+PYVF  +++ V+  +    +EE+E   DSDQEELD+FIAEIEDAAD++W  EE 
Sbjct: 306 DKKEGTPYVFYSDKQAVAETKTKTNMEEAESDSDSDQEELDRFIAEIEDAADRDWVAEEA 365

Query: 371 AEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEH-- 428
           AEKEEL+++RY +REE GGRFR+S+   N+D DD   +   W+   +K+R+ +S++E   
Sbjct: 366 AEKEELSQLRYRNREEHGGRFRKSDMRTNNDSDDEMDKPRVWRQRDSKQRLYNSEEEDGD 425

Query: 429 -------DSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEA 481
                  DS D +N ++  +D  DSD AH     +R    + +   + R +E   RNV+ 
Sbjct: 426 HENEEEWDSDDGQNANNSYTD--DSDGAHQIVKATRRAGGRHD-LAKTRSFE---RNVDP 479

Query: 482 DFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATV 541
            F+R+M  E SE ENM SD+EN MW+S+ E+E D + S+   + +Y    D+ED  +   
Sbjct: 480 -FARRMDKEASEPENMLSDLENTMWQSDEEEEDDMKISK-NVDQDY---KDNEDHLHHMK 534

Query: 542 GNKKNGMNEFESEAD-SSEAHNKVNN---------------RLNKTQKEADEA---WDSD 582
            ++ N  N+++S  D   E++NK  +               R N   K+ D     WDSD
Sbjct: 535 KDRNNRHNDYDSSIDEPDESYNKFKHTYTKQKQDRMSKSKSRYNSVSKDTDSGKAMWDSD 594

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483922|ref|XP_004156733.1| PREDICTED: uncharacterized protein LOC101226279 [Cucumis sativus]

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 352/600 (58%), Positives = 430/600 (71%), Gaps = 45/600 (7%)

Query: 12  FKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRPTTHFCDDNRFSFTPLNYPFNRWS 71
           F  +S LL SN  +    V L  D + + VS N+   + H  +    S + +  PFN   
Sbjct: 11  FSRVSNLLLSNRYN---RVILSTDCNSEAVSCNVGHRSIH-GEYVLPSTSKVVGPFNGLV 66

Query: 72  RAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVA 131
           R MSTSK GRSMRSKVERRM+KESGKT+REIRRAKKIKKKLMT+EERL+YNLKRAKKKVA
Sbjct: 67  RCMSTSK-GRSMRSKVERRMRKESGKTLREIRRAKKIKKKLMTEEERLLYNLKRAKKKVA 125

Query: 132 LLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHL 191
           LLLQ+LKKYELPELPP  HDPEL TPEQLQAYKKIGFRN+NYVPVGVRGVFGGVVQNMHL
Sbjct: 126 LLLQQLKKYELPELPPPRHDPELLTPEQLQAYKKIGFRNRNYVPVGVRGVFGGVVQNMHL 185

Query: 192 HWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIP 251
           HWKFHETVQVCCDNFPKEKIKEMATM+ARLSGGIV+NIH+VKTIIMFRGRNYRQPKNLIP
Sbjct: 186 HWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVKTIIMFRGRNYRQPKNLIP 245

Query: 252 FNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAI 311
            NTLTKRKALFKARFEQAL+SQKLNIKKIEQ+LRR G NPEDPVAMASIQRVASTFFNAI
Sbjct: 246 INTLTKRKALFKARFEQALDSQKLNIKKIEQELRRKGINPEDPVAMASIQRVASTFFNAI 305

Query: 312 DQKEGSPYVFRGERE-VSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWAEEEE 370
           D+KEG+PYVF  +++ V+  +    +EE+E   DSDQEELD+FIAEIEDAAD++W  EE 
Sbjct: 306 DKKEGTPYVFYSDKQAVAETKTKTNMEEAESDSDSDQEELDRFIAEIEDAADRDWVAEEA 365

Query: 371 AEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEH-- 428
           AEKEEL+++RY +REE GGRFR+S+   N+D DD   +   W+   +K+R+ +S++E   
Sbjct: 366 AEKEELSQLRYRNREEHGGRFRKSDMRTNNDSDDEMDKPRVWRQRDSKQRLYNSEEEDGD 425

Query: 429 -------DSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEA 481
                  DS D +N ++  +D  DSD AH     +R    + +   + R +E   RNV+ 
Sbjct: 426 HENEEEWDSDDGQNANNSYTD--DSDGAHQIVKATRRAGGRHD-LAKTRSFE---RNVDP 479

Query: 482 DFSRKMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDEFYATV 541
            F+R+M  E SE ENM SD+EN MW+S+ E+E D + S+   + +Y    D+ED  +   
Sbjct: 480 -FARRMDKEASEPENMLSDLENTMWQSDEEEEDDMKISK-NVDQDY---KDNEDHLHHMK 534

Query: 542 GNKKNGMNEFESEADS-SEAHNKVNN---------------RLNKTQKEADEA---WDSD 582
            ++ N  N+++S  D   E++NK  +               R N   K+ D     WDSD
Sbjct: 535 KDRNNRHNDYDSSIDEPDESYNKFKHTYTKQKQDRMSKSKSRYNSVSKDTDSGKAMWDSD 594

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818350|ref|XP_002877058.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp. lyrata] gi|297322896|gb|EFH53317.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp. lyrata]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 328/526 (62%), Positives = 380/526 (72%), Gaps = 44/526 (8%)

Query: 63  LNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYN 122
           +N  F  W RAMSTS RGRSMRSKVE RM+KESGKT+REIRRAKK+KKKLMTDEERLIYN
Sbjct: 1   MNQVFKGWYRAMSTS-RGRSMRSKVESRMRKESGKTLREIRRAKKLKKKLMTDEERLIYN 59

Query: 123 LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVF 182
           LKRAKKKVALLLQKLKKY+LPELP  VHDPELFT EQ+QA+KKIGF+NKNYVPVGVRGVF
Sbjct: 60  LKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVF 119

Query: 183 GGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRN 242
           GGVVQNMH+HWKFHETVQVCCDNFPKEKIKEMA+MIARLSGG+VINIHNVKTIIMFRGRN
Sbjct: 120 GGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRN 179

Query: 243 YRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQR 302
           YRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKK EQQLRRMG NPEDPVAMASIQR
Sbjct: 180 YRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGVNPEDPVAMASIQR 239

Query: 303 VASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPP-VDSDQEELDKFIAEIEDAA 361
           VASTFFNAID+KEG+PYVF G+++          EESEP   DSDQEELD+FIAEIE+AA
Sbjct: 240 VASTFFNAIDKKEGTPYVFHGDKQSERGASVDNREESEPGDEDSDQEELDRFIAEIEEAA 299

Query: 362 DKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRI 421
           DKEW EEE AE+EE  RIRYW+REE  GR R  E     D     RR    +D R++ R 
Sbjct: 300 DKEWEEEEAAEQEEAGRIRYWNREEFAGRSRTPELRSYGDASHGFRRNE--RDPRSQTRP 357

Query: 422 IDSDDEHDSSDVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEA 481
            DSD++ D               + D   DE  +         +F RAR      R    
Sbjct: 358 KDSDEDDDG--------------ELDSEDDEIPK---------RFDRARSSNTNTRRPRE 394

Query: 482 DFSR-----KMTNEDSESENMFSDVENAMWKSESEDEHDSRASRAEANHNYMSSSDDEDE 536
           DF R     ++  +    +++ SD++N MW  +SEDE D+  +      NY+SSSDD+++
Sbjct: 395 DFKRRSPDPRLRPQVRSDDDVLSDLDNTMW--DSEDEEDAPPA------NYISSSDDDED 446

Query: 537 FYATVGNKKNGMNEFESEADSSEAHNKVNNRLNKTQKEADEAWDSD 582
              T+    +    F + +    + + +NN   K+ K+ DE WDSD
Sbjct: 447 ENRTISASSSKQPRFRNNS----SRDGINNSKTKSGKQTDEDWDSD 488

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232195|ref|NP_189392.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana] gi|11994182|dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana] gi|332643815|gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 283/356 (79%), Positives = 305/356 (85%), Gaps = 11/356 (3%)

Query: 63  LNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAKKIKKKLMTDEERLIYN 122
           +N  F  WSR MSTS RGRSMRSKVE RM+KESGKT+REIRRAKK+KKKLMTDEERLIYN
Sbjct: 1   MNQVFKGWSRGMSTS-RGRSMRSKVESRMRKESGKTLREIRRAKKLKKKLMTDEERLIYN 59

Query: 123 LKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVF 182
           LKRAKKKVALLLQKLKKY+LPELP  VHDPELFT EQ+QA+KKIGF+NKNYVPVGVRGVF
Sbjct: 60  LKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVF 119

Query: 183 GGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRN 242
           GGVVQNMH+HWKFHETVQVCCDNFPKEKIKEMA+MIARLSGG+VINIHNVKTIIMFRGRN
Sbjct: 120 GGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRN 179

Query: 243 YRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQR 302
           YRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKK EQQLRRMG NPEDPVAMASI R
Sbjct: 180 YRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGVNPEDPVAMASIHR 239

Query: 303 VASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPP-VDSDQEELDKFIAEIEDAA 361
           VASTFFNAID+KEG+PYVF G+++          EESEP   DSDQEELD+FIAEIE+AA
Sbjct: 240 VASTFFNAIDKKEGTPYVFHGDKQSERGTSVDNREESEPGDEDSDQEELDRFIAEIEEAA 299

Query: 362 DKEWAEEEEAEKEELTRIRYWDREEIGGRFRRSE---------NFRNSDMDDISRR 408
           DKEW EEE AE+EE  RIRYW+REE  GR R  E          FR +D D  S+R
Sbjct: 300 DKEWEEEEAAEQEESGRIRYWNREEFAGRSRTPELRSYGDASHGFRRNDRDTHSQR 355

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	582
TAIR|locus:2091458	491	AT3G27550 [Arabidopsis thalian	0.814	0.965	0.519	4.9e-117
TAIR|locus:2094438	444	LOH1 "LAG One Homologue 1" [Ar	0.494	0.648	0.297	4.4e-29
TAIR|locus:2123276	343	AT4G13070 [Arabidopsis thalian	0.410	0.696	0.318	1.1e-25
TAIR|locus:2056558	372	AT2G28480 [Arabidopsis thalian	0.343	0.537	0.320	7.2e-22
TAIR|locus:2096662	1011	CFM2 "CRM family member 2" [Ar	0.249	0.143	0.313	3.6e-15
TAIR|locus:2094997	848	EMB1865 "embryo defective 1865	0.237	0.162	0.312	2.1e-11
TAIR|locus:2094558	881	CFM3A "CRM family member 3A" [	0.235	0.155	0.314	2.4e-11
TAIR|locus:2181372	720	CRS1 "ortholog of maize chloro	0.213	0.172	0.289	1.2e-06
DICTYBASE|DDB_G0293562	527	DDB_G0293562 [Dictyostelium di	0.336	0.371	0.212	3.4e-05
ASPGD|ASPL0000076731	524	AN4865 [Emericella nidulans (t	0.302	0.335	0.225	0.00015

TAIR|locus:2091458 AT3G27550 [Arabidopsis thaliana (taxid:3702)]

 Score = 1153 (410.9 bits), Expect = 4.9e-117, P = 4.9e-117
 Identities = 259/499 (51%), Positives = 306/499 (61%)

Query:    63 LNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKTMREIRRAXXXXXXLMTDEERLIYN 122
             +N  F  WSR MSTS RGRSMRSKVE RM+KESGKT+REIRRA      LMTDEERLIYN
Sbjct:     1 MNQVFKGWSRGMSTS-RGRSMRSKVESRMRKESGKTLREIRRAKKLKKKLMTDEERLIYN 59

Query:   123 XXXXXXXXXXXXXXXXXYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYXXXXXXXXX 182
                              Y+LPELP  VHDPELFT EQ+QA+KKIGF+NKNY         
Sbjct:    60 LKRAKKKVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVF 119

Query:   183 XXXXQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRN 242
                 QNMH+HWKFHETVQVCCDNFPKEKIKEMA+MIARLSGG+VINIHNVKTIIMFRGRN
Sbjct:   120 GGVVQNMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRN 179

Query:   243 YRQPKNLIPFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQR 302
             YRQPKNLIP NTLTKRKALFKARFEQALESQKLNIKK EQQLRRMG NPEDPVAMASI R
Sbjct:   180 YRQPKNLIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQLRRMGVNPEDPVAMASIHR 239

Query:   303 VASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEP-PVDSDQEELDKFXXXXXXXX 361
             VASTFFNAID+KEG+PYVF G+++          EESEP   DSDQEELD+F        
Sbjct:   240 VASTFFNAIDKKEGTPYVFHGDKQSERGTSVDNREESEPGDEDSDQEELDRFIAEIEEAA 299

Query:   362 XXXXXXXXXXXXXXLTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRI 421
                             RIRYW+REE  GR R  E     D     RR    +D  +++R 
Sbjct:   300 DKEWEEEEAAEQEESGRIRYWNREEFAGRSRTPELRSYGDASHGFRRND--RDTHSQRR- 356

Query:   422 IXXXXXXXXXXVRNGSDLQSDAYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEA 481
                          N SD   D  + D   DE  + R +R +       R  E  KR    
Sbjct:   357 ------------PNDSDDDDDDGELDSEDDEIPK-RFDRARSSNTNTRRPREDFKRRSPD 403

Query:   482 DFSRKMTNEDSESENMFSDVENAMWKSESEDE-----HDSRASRAEANHNYMSSSDDEDE 536
                R      S+ +++ SD++N MW SE E++     + S +   E  +  +S+S  +  
Sbjct:   404 PRPRPRAQVRSD-DDVLSDLDNTMWDSEDEEDAPPANYISSSDDDEDENRTVSASSSKQS 462

Query:   537 FYATVGNKKNGMNEFESEA 555
              +    + ++G+N  +S++
Sbjct:   463 RFRN-NSSRDGINNSKSKS 480

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2094438 LOH1 "LAG One Homologue 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 4.4e-29, Sum P(2) = 4.4e-29
 Identities = 88/296 (29%), Positives = 142/296 (47%)

Query:     5 RNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDVSPKLVSSNMIRP--TTHFCDDNRFSFTP 62
             R  ++  F   S  L S+  S+ + ++    V   L   ++ RP     F   + F  TP
Sbjct:    21 RKSRQLGFLASSSPLFSSFNSMNRTISSCNIVCKVLHKESLTRPMWNVSFLRSSSFHSTP 80

Query:    63 LNYPFNR-WSRAMSTSKRGRSMRSKVERRMQKESGKTMREI---RRAXXXXXXLMTDEER 118
                  +   S++ ++S +     +K++R+  K     +R +   R         MT EE+
Sbjct:    81 ARETGDDDISKSENSSSQDGDSCTKLKRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEK 140

Query:   119 LIYNXXXXXXXXXXXXXXXXXYELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYXXXXX 178
             ++                    E  E   + HDPE+ TPE+   Y K+G + KNY     
Sbjct:   141 ILNKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGR 200

Query:   179 XXXXXXXXQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMF 238
                      NMHLHWK H+T+QV    F  +++KE+A  +ARL+GGIV+++H   TIIM+
Sbjct:   201 RGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMY 260

Query:   239 RGRNYRQPKNLI--PFNTLTKRKALFKARFEQALESQKLNIKKIEQQLRRMGTNPE 292
             RG+NY QP   I  P  TL ++KAL K++   AL + +  I ++EQ+L+ +    E
Sbjct:   261 RGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 316

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0042761 "very long-chain fatty acid biosynthetic process" evidence=IGI

GO:0050291 "sphingosine N-acyltransferase activity" evidence=IGI

TAIR|locus:2123276 AT4G13070 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 80/251 (31%), Positives = 125/251 (49%)

Query:    37 SPKLVSSNMIRPTTHFCDDN--RFSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKE 94
             S + +S++ I   T   DDN  RF+F  ++   N     + T K  +  R+K+ R+ +  
Sbjct:    71 SRRYLSNSTIELRT---DDNVVRFAFNNVSSSGNN---VVPTRKEKKWKRAKLSRKAKVN 124

Query:    95 SGKTMREIRRAXXXXXXLMTDEERLIYNXXXXXXXXXXXXXXXXXYELPELPPSVHDPEL 154
                 +R  R            E R+ Y                  Y++P+ P   +DPE 
Sbjct:   125 E---LRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPES 181

Query:   155 FTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHETVQVCCDNFPKE-KIKE 213
              T E+    K+ G + KN+              N+HLHWK HETV+V C    K  ++ E
Sbjct:   182 LTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHE 241

Query:   214 MATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQALESQ 273
              A  +ARLS GIVI++    TI+++RG+NY +P+ + P +TL+K KAL K R+EQ+LE  
Sbjct:   242 YAEELARLSKGIVIDVKPNNTIVLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHT 301

Query:   274 KLNIKKIEQQL 284
                I+K+E++L
Sbjct:   302 SEFIEKLEKEL 312

GO:0003723 "RNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2056558 AT2G28480 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 7.2e-22, P = 7.2e-22
 Identities = 66/206 (32%), Positives = 108/206 (52%)

Query:    84 RSKVERRMQKE--SGKTMREIRRAXXXXXX--LMTDEERLIYNXXXXXXXXXXXXXXXXX 139
             R K++R+ ++E  +    ++ RR          +  EER+ Y                  
Sbjct:    89 RLKLKRKKEREERNAANRKDPRRLTVKGKKKKFVNAEERIKYKLEKAKIKEALLIERLKR 148

Query:   140 YELPELP-PSVHDPELFTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHET 198
             YE+ ++  P V   E+ T E+    KK+G +  NY              NMHLHWK HET
Sbjct:   149 YEVAKVQGPEVRPHEI-TGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHET 207

Query:   199 VQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNTLTKR 258
             V+V C+N    ++++ A  +A+LSGG+ +NI    TII +RG+ Y QP+ + P +TL+K+
Sbjct:   208 VKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDTIIFYRGKGYVQPQVMSPIDTLSKK 267

Query:   259 KALFKARFEQALESQKLNIKKIEQQL 284
             +A  K+++EQ+LES +  I   E++L
Sbjct:   268 RAYEKSKYEQSLESVRHFIAIAEKEL 293

GO:0003723 "RNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2096662 CFM2 "CRM family member 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
 Identities = 47/150 (31%), Positives = 81/150 (54%)

Query:   141 ELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHETVQ 200
             E P+L  S  D E  T ++    +KIG + K +             +NMHLHWK+ E V+
Sbjct:   567 ESPQL--SDIDKEGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVK 624

Query:   201 VCCDNFPKEKIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTK 257
             + C+ +  E   ++A ++   SGGI++ +  V     II++RG+NY +P+ L P   L+K
Sbjct:   625 IICNEYSIEAAHKVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSK 684

Query:   258 RKALFKARFEQALESQKLNIKKIEQQLRRM 287
             R+AL ++   Q  +S KL++ K+   +  +
Sbjct:   685 REALKRSVEAQRRKSLKLHVLKLSNNIEEL 714

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;RCA

GO:0000372 "Group I intron splicing" evidence=IMP

GO:0000373 "Group II intron splicing" evidence=IMP

TAIR|locus:2094997 EMB1865 "embryo defective 1865" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
 Identities = 44/141 (31%), Positives = 77/141 (54%)

Query:   150 HDPELFTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHETVQVCCDNFPKE 209
             +D E+ + E+   ++K+G + K Y             +NMHLHWK  E V++      + 
Sbjct:   648 YDQEVISEEERAMFRKVGLKMKAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQA 707

Query:   210 KIKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARF 266
              ++E A ++   SGG+++ I  V     +I +RG+NYR+P +L P N LTK KAL ++  
Sbjct:   708 FVEETARLLEYESGGVLVAIEKVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIA 767

Query:   267 EQALESQKLNIKKIEQQLRRM 287
              Q  E+   +I ++E+ + +M
Sbjct:   768 MQRHEALSQHISELERTIEQM 788

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

TAIR|locus:2094558 CFM3A "CRM family member 3A" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
 Identities = 44/140 (31%), Positives = 77/140 (55%)

Query:   151 DPELFTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHETVQVCCDNFPKEK 210
             DPE  T E+   ++K+G + K +             +NMHLHWK+ E V++       + 
Sbjct:   634 DPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDG 693

Query:   211 IKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKNLIPFNTLTKRKALFKARFE 267
             +K++A  +   SGGI+++I  V     II++RG++Y++P  L P N LTKRKAL ++   
Sbjct:   694 VKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTKRKALARSIEL 753

Query:   268 QALESQKLNIKKIEQQLRRM 287
             Q  E    +I  ++ + +++
Sbjct:   754 QRREGLLKHISTMQAKAKQL 773

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0048316 "seed development" evidence=IGI

TAIR|locus:2181372 CRS1 "ortholog of maize chloroplast splicing factor CRS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 37/128 (28%), Positives = 64/128 (50%)

Query:   151 DPELFTPEQLQAYKKIGFRNKNYXXXXXXXXXXXXXQNMHLHWKFHETVQVCCDNFPKEK 210
             D E+ T E+ +  ++IG +  +              + +H HWK  E  +V        +
Sbjct:   568 DIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSR 627

Query:   211 IKEMATMIARLSGGIVINIHNVK---TIIMFRGRNYRQPKN-LIPFNTLTKRKALFKARF 266
             +   A  +   S G++I+I  +K    I+++RG+NY++P + L+  N LTKRKAL ++  
Sbjct:   628 VVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVV 687

Query:   267 EQALESQK 274
              Q L S K
Sbjct:   688 MQRLGSLK 695

GO:0003723 "RNA binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0000373 "Group II intron splicing" evidence=IDA

DICTYBASE|DDB_G0293562 DDB_G0293562 [Dictyostelium discoideum (taxid:44689)]

 Score = 131 (51.2 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 43/202 (21%), Positives = 96/202 (47%)

Query:   383 DREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIXXXXXXXXXXVRNGSDLQSD 442
             +++E   + ++ E+  +SD       +   +D + KK+ I              SD  SD
Sbjct:    99 NKKEEAKKKKKVESSDSSDSSSSDSSSSESEDEKKKKKEIKKVETKKPIKKVESSD-SSD 157

Query:   443 AYDSDEAHDEFNRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVE 502
             +  SD + ++  + +  ++ + K    ++ E +K   + + S    + DS+S +  S+ E
Sbjct:   158 SDSSDSSSEDEKKKKDNKKVETKKVETKKVETKKVETKKEESSDSDSSDSDSSSSESESE 217

Query:   503 NAMWKSESED-EHDSRASRAEANHNYMSSSDDEDEFYATVGNKKNGMNEFESEADSSEAH 561
             +   K +++  E     S +E++    S S+DE++    VG KK   ++ +S +  SE+ 
Sbjct:   218 DEKKKKDTKKVEIKKEESESESSE---SESEDENKDNKKVGTKKEESSDSDSSSSESESE 274

Query:   562 NKVNNRLNK-TQKEADEAWDSD 582
             ++   + NK  + + +E+ DS+
Sbjct:   275 DEKKKKNNKKVEAKKEESSDSE 296

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000076731 AN4865 [Emericella nidulans (taxid:162425)]

 Score = 125 (49.1 bits), Expect = 0.00015, P = 0.00015
 Identities = 42/186 (22%), Positives = 84/186 (45%)

Query:   394 SENFRNSDMDDISRRTVGWKDNRAKKRIIXXXXXXXXXXVRNGSDLQSDAYDSDEAHDEF 453
             SE+   S+ D  S  +    +   KK +             + S+ +SD+ DSDE   + 
Sbjct:    71 SESESESESDSSSSESESEDEKPVKKEV-----KKEAKKAESSSESESDSSDSDEEMKDA 125

Query:   454 NRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDE 513
             + S  +   + +     +   +    E    +K  + +SES +  SD ++    SE E+ 
Sbjct:   126 SSSESDSESESE---EEKKPAKSAKAEPKVVKKAESSESESSDS-SDSDSDDESSEEEEV 181

Query:   514 HDSRASRAEANHNYMSSSDDEDEFYATV-GNKKNGMNEFESEADSSEAHNKVNNRLNKTQ 572
               ++A  AE++ +  S S+ E+E  A   G+ K    E +S++DSSE+ +  +     + 
Sbjct:   182 PKAKAKAAESSDSEDSDSESEEEAPAKAKGDAKTSKEESDSDSDSSESSSDSDEESGSSG 241

Query:   573 KEADEA 578
              E++++
Sbjct:   242 SESEDS 247

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_I002181 hypothetical protein (496 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	582
smart01103	84	smart01103, CRS1_YhbY, Escherichia coli YhbY is as	3e-18
pfam01985	84	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	3e-17

>gnl|CDD|198171 smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly

 Score = 79.4 bits (197), Expect = 3e-18
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 156 TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 215
           T +Q +  + +    K  V +G  G+  GV++ +    + HE ++V      +E  KE+A
Sbjct: 2   TGKQKRYLRSLAHHLKPVVQIGKNGLTEGVLEEIDEALEKHELIKVKVLGNDREDRKEIA 61

Query: 216 TMIARLSGGIVINIHNVKTIIMFR 239
             +A  +G  ++ +   KTI+++R
Sbjct: 62  EELAEETGAELVQVIG-KTIVLYR 84

GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Length = 84

>gnl|CDD|190184 pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain

 Score = 76.4 bits (189), Expect = 3e-17
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 1/84 (1%)

Query: 156 TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 215
           T +Q +  + +    K  V +G  G+  GVV+ +    + HE ++V      +E  KE+A
Sbjct: 2   TGKQRRYLRSLAHHLKPVVQIGKNGLTEGVVEEIDEALEKHELIKVKVLGNDREDRKEIA 61

Query: 216 TMIARLSGGIVINIHNVKTIIMFR 239
             +A  +G  ++     +TI+++R
Sbjct: 62  EELAEKTGAELVQ-VIGRTIVLYR 84

Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome. Length = 84

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	582
PRK10343	97	RNA-binding protein YhbY; Provisional	99.96
TIGR00253	95	RNA_bind_YhbY putative RNA-binding protein, YhbY f	99.95
COG1534	97	Predicted RNA-binding protein containing KH domain	99.94
PF01985	84	CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR	99.94
KOG1990	564	consensus Poly(A)-specific exoribonuclease PARN [R	99.88
KOG1990	564	consensus Poly(A)-specific exoribonuclease PARN [R	99.53

>PRK10343 RNA-binding protein YhbY; Provisional

Probab=99.96  E-value=1.4e-28  Score=213.90  Aligned_cols=97  Identities=22%  Similarity=0.310  Sum_probs=92.0

Q ss_pred             CCCCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCEEEEEEcC
Q 007992          153 ELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNV  232 (582)
Q Consensus       153 EmLTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGeLVQVIGg  232 (582)
                      ++||++||+|||++||+|+|+|+||++|||++||.+|..+|++||||||++++++.+++++++++|++.|||++||+|| 
T Consensus         1 m~Lt~kqr~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~IG-   79 (97)
T PRK10343          1 MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIG-   79 (97)
T ss_pred             CCCCHHHHHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEeeeC-
Confidence            3699999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             eEEEEecCCCCCCCCCCCCc
Q 007992          233 KTIIMFRGRNYRQPKNLIPF  252 (582)
Q Consensus       233 ~tIILYRGKNYkrPkilLPr  252 (582)
                      +++||||+++  .|.+.||+
T Consensus        80 ~~~vlYR~~~--~~~i~lp~   97 (97)
T PRK10343         80 KTLVLYRPTK--ERKISLPR   97 (97)
T ss_pred             cEEEEEecCC--CccCCCCC
Confidence            9999999875  36777774

>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family

Probab=99.95  E-value=5.6e-28  Score=209.05  Aligned_cols=95  Identities=20%  Similarity=0.296  Sum_probs=89.5

Q ss_pred             CCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCEEEEEEcCeE
Q 007992          155 FTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKT  234 (582)
Q Consensus       155 LTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGeLVQVIGg~t  234 (582)
                      ||++||++||++||+|+|+|+|||+|||++||++|+.+|++||||||++++++.++++++|.+|++.|||+|||+|| ++
T Consensus         1 Lt~kqr~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~~~~~~e~a~~i~~~~~a~~Vq~iG-~~   79 (95)
T TIGR00253         1 LTGKQKRHLRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATEDREDKTLIAEALVKETGACNVQVIG-KT   79 (95)
T ss_pred             CCHHHHHHHHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEEEEc-cE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             EEEecCCCCCCCCCCCC
Q 007992          235 IIMFRGRNYRQPKNLIP  251 (582)
Q Consensus       235 IILYRGKNYkrPkilLP  251 (582)
                      +||||+++. .|.+.+|
T Consensus        80 ~vlYR~~~~-~~~i~l~   95 (95)
T TIGR00253        80 IVLYRPTKE-RKIIELP   95 (95)
T ss_pred             EEEEecCCc-cCCcCCC
Confidence            999998653 3456665

A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.

>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=1.6e-26  Score=201.46  Aligned_cols=97  Identities=22%  Similarity=0.347  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCEEEEEEcCe
Q 007992          154 LFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK  233 (582)
Q Consensus       154 mLTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGeLVQVIGg~  233 (582)
                      +||++|+++||++||+++|+|+||++|||++||.+|..+|++||||||++.+++.++.+++|+.|++.+||.+||+|| +
T Consensus         1 ~Lt~kq~~~Lrs~Ah~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~~~~edr~eia~~l~~~~~a~lVqviG-~   79 (97)
T COG1534           1 MLTGKQKRFLRSKAHHLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQNAREDKKEIAEALAEETGAELVQVIG-K   79 (97)
T ss_pred             CCcHHHHHHHHHhhccCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeeccchhhHHHHHHHHHHHhCCEEeeeee-e
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             EEEEecCCCCCCCCCCCCc
Q 007992          234 TIIMFRGRNYRQPKNLIPF  252 (582)
Q Consensus       234 tIILYRGKNYkrPkilLPr  252 (582)
                      ++|||| .+..++++.+|+
T Consensus        80 ~~vlyr-~~~e~~~i~l~~   97 (97)
T COG1534          80 TLVLYR-ESKEKRKISLPR   97 (97)
T ss_pred             EEEEEe-cCcccccccCCC
Confidence            999999 466667888885

>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain

Probab=99.94  E-value=1.1e-26  Score=194.66  Aligned_cols=84  Identities=26%  Similarity=0.411  Sum_probs=75.6

Q ss_pred             CCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCEEEEEEcCeE
Q 007992          155 FTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVKT  234 (582)
Q Consensus       155 LTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGeLVQVIGg~t  234 (582)
                      ||++|+++||++||+|+|+|+|||+|||++||++|+.+|++||||||+|++++.++++++|+.|++.|||+|||+|| ++
T Consensus         1 Lt~ke~~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG-~~   79 (84)
T PF01985_consen    1 LTSKERKFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIG-RT   79 (84)
T ss_dssp             --HHHHHHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEEET-TE
T ss_pred             CCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEEC-CE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             EEEec
Q 007992          235 IIMFR  239 (582)
Q Consensus       235 IILYR  239 (582)
                      +||||
T Consensus        80 ~vlyR   84 (84)
T PF01985_consen   80 IVLYR   84 (84)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99998

The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.

>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]

Probab=99.88  E-value=2.2e-23  Score=224.09  Aligned_cols=180  Identities=38%  Similarity=0.608  Sum_probs=164.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC-CCCCCCCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhh
Q 007992          116 EERLIYNLKRAKKKVALLLQKLKKYELPELPPSV-HDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWK  194 (582)
Q Consensus       116 eerl~~~L~~ak~k~e~ll~KL~k~~~P~~p~p~-~DpEmLTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK  194 (582)
                      ++.+.+++..++++.+.....|.++..|..|... ++++.+|.+++.+++++|.+|++++.+|.+|+++|||.++|.||+
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~t~ee~~~~~k~g~k~~~~~~~~rrg~f~g~i~n~~l~wk  422 (564)
T KOG1990|consen  343 TEAIFHKLEKAKKKLASANRILAKLEDPKIPAELRYDPESITEEERLMLRKVGLKMKRRLLSGRRGVFDGVIENMHLHWK  422 (564)
T ss_pred             HHHHHHHHhhhhhhccchhhhhhcccccccccccccchhhcChHHHHHHHHHHHhhccccccCCcccccceeecchhhhh
Confidence            4677777888888888887777777777655544 899999999999999999999999999999999999999999999


Q ss_pred             hCCeEeEEecCCCH-HHHHHHHHHHHHHhCCEEEEEEcCeE---EEEecCCCCCCCCCCCCcCCCChHHHHHHHHHHHHH
Q 007992          195 FHETVQVCCDNFPK-EKIKEMATMIARLSGGIVINIHNVKT---IIMFRGRNYRQPKNLIPFNTLTKRKALFKARFEQAL  270 (582)
Q Consensus       195 ~HELVKVK~lqns~-ed~kEiAeeLAe~TGGeLVQVIGg~t---IILYRGKNYkrPkilLPrnlLTKrkAL~RS~~~Qrl  270 (582)
                      +||++||+|+.... ..++..|..++..+|+++|.++.+..   |++|||+||.+|..+.|.++|+||+|+.+++++|++
T Consensus       423 ~~e~~k~i~~~~~~~~~~~~~a~~le~esg~~~v~~~~~~~~~ai~~yr~k~y~~p~~l~P~~~l~~~k~~~~~~~~~~~  502 (564)
T KOG1990|consen  423 SRELVKVICKEKNLPSQVKQYASALERESGGILVSIDKNPKGYAIIAYRGKNYDRPTSLRPRNLLSRRKALERSLEEQRK  502 (564)
T ss_pred             hcccceeeeccccccHHHHHHHHHHHHHhCCceeeeccCCchhhHHHhhhhhccCCcccCchhhhcccCCccccHHHHHH
Confidence            99999999998776 99999999999999999999998655   999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCChh
Q 007992          271 ESQKLNIKKIEQQLRRMGTNPEDPV  295 (582)
Q Consensus       271 eslk~~I~~le~~l~~m~~~~e~~~  295 (582)
                      ++++.||..++++++++.+.-+.+.
T Consensus       503 ~a~~~~i~~~~~~~e~~~~~~~~~~  527 (564)
T KOG1990|consen  503 EALKSHISDLEQEIEQLQASVEAMP  527 (564)
T ss_pred             HHHhhhcchhhhhHHHhhcchhccc
Confidence            9999999999999999988755433

>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]

Probab=99.53  E-value=3.2e-15  Score=161.57  Aligned_cols=430  Identities=17%  Similarity=0.140  Sum_probs=305.9

Q ss_pred             CCCCCccccccccc-ccccccchHHHHHHHH---HhhhhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007992           64 NYPFNRWSRAMSTS-KRGRSMRSKVERRMQK---ESGKTMREIRRAKKIKKKLMTDEERLIYNLKRAKKKVALLLQKLKK  139 (582)
Q Consensus        64 ~~~~~~~~~~~~t~-~~gr~~~sk~e~rm~k---e~~k~~~elr~~kk~~~k~~~~eerl~~~L~~ak~k~e~ll~KL~k  139 (582)
                      ++.+..|++|+.++ ..|...++....-++.   +..+.+.+++.++......|.++..-.+........+++++++++.
T Consensus        80 ~~n~~~~~~g~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~  159 (564)
T KOG1990|consen   80 GGNFVVWSRGDSISSPEFLCQRSPVDFVARQQENQAGKWPSELEKEKNELLDSLGPELSDWGGSDRLSVDADLLPEKIPD  159 (564)
T ss_pred             CCceeeeecCccccCCccceeecchhhhhhhchhhhhhhHHHHHHHHHHHhhccCcccccCCCCCCccchhhhchhhhhc
Confidence            44566787777663 2356667777766666   6666678888888888888888888888777788899999999999


Q ss_pred             cCCCCCCCCCCCCCCCCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCC-HHHHHHHHHHH
Q 007992          140 YELPELPPSVHDPELFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFP-KEKIKEMATMI  218 (582)
Q Consensus       140 ~~~P~~p~p~~DpEmLTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns-~ed~kEiAeeL  218 (582)
                      |..|...-|...+..||..+..++|.+|-.+.|++.+|..+...++...|..+|..|+.+|+.+.... ......++..+
T Consensus       160 ~~~p~r~l~~~~~~~l~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l  239 (564)
T KOG1990|consen  160 YMRPFRTLPVGSPPLLTSIESTLLRRLGYKLPPHFALGRSRKLQGLAVAMVSFWEKHEFAKILIKRGVLETRKERMADEL  239 (564)
T ss_pred             ccChhccCCCCChhhhhhHHHHHHHHhcccccccceehhccccccchhHHHHHHHHHHHHHHHHHhcchhhhccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888644 44556777777


Q ss_pred             --HHHhCCEEEEEEcCeEEEEecCCCCCCCCCCCCcCC--CCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007992          219 --ARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIPFNT--LTK-----RKALFKARFEQALESQKLNIKKIEQQLRRMGT  289 (582)
Q Consensus       219 --Ae~TGGeLVQVIGg~tIILYRGKNYkrPkilLPrnl--LTK-----rkAL~RS~~~Qrleslk~~I~~le~~l~~m~~  289 (582)
                        -..||+.||..-+ -.+|+||++++-.   .+|.++  .+.     ...+...++++--+.+...+.....++..++.
T Consensus       240 ~~~~~tg~~lv~hN~-~~dv~y~~~~Fl~---~lp~~l~~f~~~~~~fp~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~  315 (564)
T KOG1990|consen  240 QELLLTGKVLVLHNK-LLDVMYRYKNFLS---PLPSTLEEFTDSSSMFPNIEDTKRLAKLSEYQKLNLKATLLELARAKA  315 (564)
T ss_pred             HHHHhcCCeEEeecc-ceeeeeehhhccc---ccchhHHHhhhhhhhhhhhHHHHHhhccccccchhhhhhHHHHHHHhc
Confidence              8899999999665 8999999999874   444433  333     34456666666444445578888999999999


Q ss_pred             CCCChhHHHHHHHhhhhcccccccccCCCccccCCCcccccccCCCCccCCCCCCCchHHHHHHHHHHhhhhhhhHHHHH
Q 007992          290 NPEDPVAMASIQRVASTFFNAIDQKEGSPYVFRGEREVSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEWAEEE  369 (582)
Q Consensus       290 ~~e~~~~m~~~~~v~s~~~~~~d~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~q~~l~~f~~~~~~~~~~~~~~~~  369 (582)
                      ..+.|.+++++.+.....|......+...++|+.+.+.-.-..........+...-...++.   ..++.+.+++|....
T Consensus       316 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~e~~t~ee~~~~~  392 (564)
T KOG1990|consen  316 KKEKEIERRSISSRLKLEFEKASSEKLTEAIFHKLEKAKKKLASANRILAKLEDPKIPAELR---YDPESITEEERLMLR  392 (564)
T ss_pred             ccccCcccccccchhhhhhhccchhhHHHHHHHHHhhhhhhccchhhhhhcccccccccccc---cchhhcChHHHHHHH
Confidence            99999999999998999999999999999999986665555444444444433311112222   567888999999999


Q ss_pred             HHHHhhhcccccccccccCcccccCCcCCCCCCchhhhcccCcccccccccCCCCCCCCCCccccCCCCCCCCCCCChhh
Q 007992          370 EAEKEELTRIRYWDREEIGGRFRRSENFRNSDMDDISRRTVGWKDNRAKKRIIDSDDEHDSSDVRNGSDLQSDAYDSDEA  449 (582)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sDE~  449 (582)
                      ....+...++.+|+|..|+|.......+.....-+..+-... . .+...+...++++-.+      +.....   -++.
T Consensus       393 k~g~k~~~~~~~~rrg~f~g~i~n~~l~wk~~e~~k~i~~~~-~-~~~~~~~~a~~le~es------g~~~v~---~~~~  461 (564)
T KOG1990|consen  393 KVGLKMKRRLLSGRRGVFDGVIENMHLHWKSRELVKVICKEK-N-LPSQVKQYASALERES------GGILVS---IDKN  461 (564)
T ss_pred             HHHHhhccccccCCcccccceeecchhhhhhcccceeeeccc-c-ccHHHHHHHHHHHHHh------CCceee---eccC
Confidence            999999999999999999999777777765555555544322 1 1122222222222222      111111   1233


Q ss_pred             hhh--hhhhHHHHhhhhcccccccccccccccccccccccCccccccccccchhhhhccCCCchhhh
Q 007992          450 HDE--FNRSRVERRKQEKFGRAREYEGRKRNVEADFSRKMTNEDSESENMFSDVENAMWKSESEDEH  514 (582)
Q Consensus       450 ~~r--F~~sR~~~~k~~~~~R~rn~~~~~Rnaea~fr~~~~~edSese~mLsD~dnamW~sd~eee~  514 (582)
                      +..  +-..|.+.-.++-.=|+++.-. +|-+-++.... .- ...-..-.++++..+|.....-..
T Consensus       462 ~~~~ai~~yr~k~y~~p~~l~P~~~l~-~~k~~~~~~~~-~~-~~a~~~~i~~~~~~~e~~~~~~~~  525 (564)
T KOG1990|consen  462 PKGYAIIAYRGKNYDRPTSLRPRNLLS-RRKALERSLEE-QR-KEALKSHISDLEQEIEQLQASVEA  525 (564)
T ss_pred             CchhhHHHhhhhhccCCcccCchhhhc-ccCCccccHHH-HH-HHHHhhhcchhhhhHHHhhcchhc
Confidence            333  3555666665444446666644 33333222221 00 111225567888888888776663

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	582
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1jo0_A	98	Hypothetical protein HI1333; structural genomics,	8e-08
1rq8_A	104	Conserved hypothetical protein; structural genomic	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 1e-12
 Identities = 89/632 (14%), Positives = 180/632 (28%), Gaps = 206/632 (32%)

Query: 2   FGTRNMQKQCFKTLSCLLQSNSCSIIKNVTLLKDV--SPKLVSSN------MIRPTTH-- 51
           F T   Q Q    LS    +     + N    KDV   PK + S       ++       
Sbjct: 9   FETGEHQYQYKDILSVFEDA----FVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSG 63

Query: 52  -------FCDDN-----RFSFTPL--NYPFNRWSRAMSTSKRGRSMRSK--VERRMQKES 95
                            +F    L  NY F   S  + T +R  SM ++  +E+R     
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSP-IKTEQRQPSMMTRMYIEQR----- 116

Query: 96  GKTMREIRRAKKIKKKLMTDEERLI-YNLKRAKKKVAL--LLQKLKKYELPELPPSVHDP 152
                          +L  D +    YN+ R +  + L   L +L+              
Sbjct: 117 --------------DRLYNDNQVFAKYNVSRLQPYLKLRQALLELR-------------- 148

Query: 153 ELFTPEQLQAYKKIGFRNKNYVPV-GVRGVFG------------GVVQNM--HLHWKFHE 197
               P +              V + GV G  G             V   M   + W    
Sbjct: 149 ----PAK-------------NVLIDGVLG-SGKTWVALDVCLSYKVQCKMDFKIFW---- 186

Query: 198 TVQVCCDNFPKEKIKEMATMIARL----------SGGIVINIHNVKTII--MFRGRNYRQ 245
            + +   N P+  ++ +  ++ ++          S  I + IH+++  +  + + + Y  
Sbjct: 187 -LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-- 243

Query: 246 PKNLI------------PFN----TL--TKRKALF-----KARFEQALESQK--LNIKKI 280
              L+             FN     L  T+ K +            +L+     L   ++
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 281 EQQLRR-MGTNPED---------PVAMASIQRVASTFFNAIDQKEGSPYVFRGEREVSVV 330
           +  L + +   P+D         P  ++ I           D      +V   ++  +++
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN---WKHVNC-DKLTTII 359

Query: 331 EPGKRIEESEPPVDSDQEELDKFIAEI--EDAADKE------WAEEEEAEKEELTRIRYW 382
           E    +   EP     ++  D+    +    A          W +  +++   +      
Sbjct: 360 E--SSLNVLEP--AEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVV----- 408

Query: 383 DREEIGGR---FRRSENFRNSDMDDISRRTVGWKDNRAK--KRIIDSDDEHDSSDVRNGS 437
              ++       ++ +    S +  I        +N     + I+D  +   + D  +  
Sbjct: 409 --NKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 438 DLQSDAY------------DSDEAHDEFNRS----RVERRKQEKFGRAREYEGRKRNVEA 481
               D Y            +  E    F       R   +K      A    G   N   
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525

Query: 482 DF---SRKMTNEDSESENMFSDVENAMWKSES 510
                   + + D + E + + + + + K E 
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 6e-06
 Identities = 57/475 (12%), Positives = 137/475 (28%), Gaps = 136/475 (28%)

Query: 1   MFGTRNMQKQCFKTLSCLLQSNSCSIIKNV---TLLKDVSPKLVSSNMIRPTTHFCDDNR 57
           + G+    K       CL     C +   +    L    SP+ V    +           
Sbjct: 158 VLGS---GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV----LEMLQKLLYQID 210

Query: 58  FSFTPLNYPFNRWSRAMSTSKRGRSMRSKVERRMQKESGKT----MREIRRAKKIK---- 109
            ++T  +        + +   R  S+++++ R ++ +  +     +  ++ AK       
Sbjct: 211 PNWTSRS------DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 110 --KKLMT--DEERLIYNLKRAKKKVALLLQKLKKYELPELPPSVHDPELFTPEQLQAY-- 163
             K L+T               K+V   L       +       H     TP+++++   
Sbjct: 265 SCKILLTTRF------------KQVTDFLSAATTTHIS----LDHHSMTLTPDEVKSLLL 308

Query: 164 KKIGFRNKNYVPVGVR-------GVFGGVVQNMHLHW---------KFHETVQVCCDNFP 207
           K +  R ++ +P  V         +    +++    W         K    ++   +   
Sbjct: 309 KYLDCRPQD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 208 KEKIKEMATMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNL-IPFNTLTKRKALFKARF 266
             + ++M   ++                 +F       P +  IP   L        +  
Sbjct: 368 PAEYRKMFDRLS-----------------VF-------PPSAHIPTILL--------SLI 395

Query: 267 EQALESQKLNIKKIEQQLRRMGTNPEDPVAMASIQRVASTFFNAIDQKEGSPYVFRGERE 326
              +     ++  +  +L +     + P        + S +     + E    + R    
Sbjct: 396 WFDVIKS--DVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYALHR---- 447

Query: 327 VSVVEPGKRIEESEPPVDSDQEELDKFIAEIEDAADKEW--------AEEEEAEKEELTR 378
                    ++    P   D ++L           D+ +           E  E+  L R
Sbjct: 448 -------SIVDHYNIPKTFDSDDLIP------PYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 379 IRYWDREEIGGRFRRSE---NFRNSDMDDISRRTVGWKDNRA-KKRIIDSDDEHD 429
           + + D   +  + R      N   S ++ +          +  K  I D+D +++
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQ-------QLKFYKPYICDNDPKYE 542

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A Length = 98

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 156 TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 215
           + +Q Q  K +       V +G  G+  GV+  +      HE ++V      +E  + + 
Sbjct: 4   STKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLII 63

Query: 216 TMIARLSGGIVINIHNVKTIIMFR 239
             I R +    +       ++++R
Sbjct: 64  NAIVRETKAAQVQTIG-HILVLYR 86

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1 Length = 104

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 12/96 (12%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 156 TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 215
           T +Q +  + +         +G  G+   +++ +    +  E ++V       +  KE+A
Sbjct: 3   TGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELA 62

Query: 216 TMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIP 251
             ++  +   ++ +     I+++R  +    +  +P
Sbjct: 63  ETLSEATRSELVQVIG-SMIVIYR-ESKENKEIELP 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	582
1rq8_A	104	Conserved hypothetical protein; structural genomic	99.97
1jo0_A	98	Hypothetical protein HI1333; structural genomics,	99.96

>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1

Probab=99.97  E-value=3.5e-30  Score=224.66  Aligned_cols=97  Identities=12%  Similarity=0.249  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCEEEEEEcCe
Q 007992          154 LFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK  233 (582)
Q Consensus       154 mLTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGeLVQVIGg~  233 (582)
                      |||++||++||++||+|+|+|+|||+|||++||++|+.||++||||||+|++++.++++++|++|++.|||+|||+|| +
T Consensus         1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG-~   79 (104)
T 1rq8_A            1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIG-S   79 (104)
T ss_dssp             CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEET-T
T ss_pred             CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEEC-C
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             EEEEecCCCCCCCCCCCCc
Q 007992          234 TIIMFRGRNYRQPKNLIPF  252 (582)
Q Consensus       234 tIILYRGKNYkrPkilLPr  252 (582)
                      ++||||+++ ..|.+.+|-
T Consensus        80 ~~VLYR~~~-~~~~i~~~~   97 (104)
T 1rq8_A           80 MIVIYRESK-ENKEIELPL   97 (104)
T ss_dssp             EEEEEECCC-SCCSCCCC-
T ss_pred             EEEEEeCCC-CCCceeccc
Confidence            999999877 678999984

>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A

Probab=99.96  E-value=1.1e-29  Score=218.97  Aligned_cols=96  Identities=18%  Similarity=0.251  Sum_probs=92.2

Q ss_pred             CCCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCEEEEEEcCe
Q 007992          154 LFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK  233 (582)
Q Consensus       154 mLTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGeLVQVIGg~  233 (582)
                      .||++||+|||++||+|+|+|+|||+|||++||++|+.||++||||||+|++++.++++++|++|++.|||+|||+|| +
T Consensus         2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG-~   80 (98)
T 1jo0_A            2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIG-H   80 (98)
T ss_dssp             CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEET-T
T ss_pred             CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEEC-C
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             EEEEecCCCCCCCCCCCCc
Q 007992          234 TIIMFRGRNYRQPKNLIPF  252 (582)
Q Consensus       234 tIILYRGKNYkrPkilLPr  252 (582)
                      ++||||++..  |.+.||.
T Consensus        81 ~~vLyR~~~~--~~i~lp~   97 (98)
T 1jo0_A           81 ILVLYRPSEE--AKIQLPR   97 (98)
T ss_dssp             EEEEECCCSS--CCBCCCC
T ss_pred             EEEEEccCCC--CCcCCCC
Confidence            9999998743  7888885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	582
d1rq8a_	96	d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphy	8e-17
d1jo0a_	97	d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus i	4e-16

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]} Length = 96

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: Hypothetical protein SAV1595
species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]

 Score = 74.0 bits (182), Expect = 8e-17
 Identities = 11/91 (12%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 156 TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 215
           T +Q +  + +         +G  G+   +++ +    +  E ++V       +  KE+A
Sbjct: 3   TGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELA 62

Query: 216 TMIARLSGGIVINIHNVKTIIMFRGRNYRQP 246
             ++  +   ++ +     I+++R     + 
Sbjct: 63  ETLSEATRSELVQVIG-SMIVIYRESKENKE 92

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]} Length = 97

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: YhbY homologue HI1333
species: Haemophilus influenzae [TaxId: 727]

 Score = 71.6 bits (176), Expect = 4e-16
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 3/96 (3%)

Query: 156 TPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMA 215
           + +Q Q  K +       V +G  G+  GV+  +      HE ++V      +E  + + 
Sbjct: 4   STKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLII 63

Query: 216 TMIARLSGGIVINIHNVKTIIMFRGRNYRQPKNLIP 251
             I R +    +       ++++R     + K  +P
Sbjct: 64  NAIVRETKAAQVQTIG-HILVLYRPSE--EAKIQLP 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	582
d1rq8a_	96	Hypothetical protein SAV1595 {Staphylococcus aureu	99.96
d1jo0a_	97	YhbY homologue HI1333 {Haemophilus influenzae [Tax	99.96

>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: Hypothetical protein SAV1595
species: Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]

Probab=99.96  E-value=5.6e-30  Score=216.88  Aligned_cols=96  Identities=13%  Similarity=0.234  Sum_probs=93.0

Q ss_pred             CCCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCEEEEEEcCe
Q 007992          154 LFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK  233 (582)
Q Consensus       154 mLTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGeLVQVIGg~  233 (582)
                      |||++||++||++||+|+|+|+||++|||++||.+|+.||+.||||||+|.+++..++++++.+|++.|||+|||+|| +
T Consensus         1 mLt~kqr~~LR~~ah~l~p~v~IGk~Glt~~vi~ei~~~l~~~ELIKvk~~~~~~~~~~~~~~~l~~~t~a~~V~~iG-~   79 (96)
T d1rq8a_           1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIG-S   79 (96)
T ss_dssp             CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEET-T
T ss_pred             CcCHHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHHHHhCCeeEEEecCCCHHHHHHHHHHHHHHhCCEEEEEEC-C
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             EEEEecCCCCCCCCCCCC
Q 007992          234 TIIMFRGRNYRQPKNLIP  251 (582)
Q Consensus       234 tIILYRGKNYkrPkilLP  251 (582)
                      ++||||++++ +|++.||
T Consensus        80 ~~vlyR~~~~-~~ki~LP   96 (96)
T d1rq8a_          80 MIVIYRESKE-NKEIELP   96 (96)
T ss_dssp             EEEEEECCCS-CCSCCCC
T ss_pred             EEEEEeCCCC-CCCCCCC
Confidence            9999998654 6899998

>d1jo0a_ d.68.4.1 (A:) YhbY homologue HI1333 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: YhbY-like
family: YhbY-like
domain: YhbY homologue HI1333
species: Haemophilus influenzae [TaxId: 727]

Probab=99.96  E-value=6.1e-30  Score=217.00  Aligned_cols=96  Identities=18%  Similarity=0.267  Sum_probs=92.9

Q ss_pred             CCCHHHHHHHHhhcccCCceEEeCCCCCcHHHHHHHHHHhhhCCeEeEEecCCCHHHHHHHHHHHHHHhCCEEEEEEcCe
Q 007992          154 LFTPEQLQAYKKIGFRNKNYVPVGVRGVFGGVVQNMHLHWKFHETVQVCCDNFPKEKIKEMATMIARLSGGIVINIHNVK  233 (582)
Q Consensus       154 mLTsKQRryLRKlAhkLKPVV~IGKrGVTDgVIeeIh~AwK~HELVKVK~lqns~ed~kEiAeeLAe~TGGeLVQVIGg~  233 (582)
                      +||++||++||++||+|+|+|.||++|||++||.+|+.||++||||||+|++.+.+++++++++|+..|||+|||+|| +
T Consensus         2 tLt~kqr~~LR~~ah~lkp~v~IGk~Glt~~vi~ei~~al~~~ELIKvki~~~~~~~~~~~~~~l~~~t~~~vV~~iG-~   80 (97)
T d1jo0a_           2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIG-H   80 (97)
T ss_dssp             CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEET-T
T ss_pred             CCCHHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHHHHhCCeEEEEEcCCCHHHHHHHHHHHHHHhCCEEEEEEC-C
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999998 9


Q ss_pred             EEEEecCCCCCCCCCCCCc
Q 007992          234 TIIMFRGRNYRQPKNLIPF  252 (582)
Q Consensus       234 tIILYRGKNYkrPkilLPr  252 (582)
                      ++||||+++  .|++.||+
T Consensus        81 ~~ilYR~~~--~~~i~lPk   97 (97)
T d1jo0a_          81 ILVLYRPSE--EAKIQLPR   97 (97)
T ss_dssp             EEEEECCCS--SCCBCCCC
T ss_pred             EEEEEcCCC--CCCCCCCC
Confidence            999999865  58999996