Citrus Sinensis ID: 007998

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580--
Protein Sequence
MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHccccccccEEHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccEEEHHHHHHHHHccccHHHHHHHHHcccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHccccccccccccHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccccEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHHcccEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEEHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHcHHHHHHHHHHHcccccccEEEEEccEEcccHHHHHHHHHHHcccEEEEEcccccEEcccccEcccccc
Coil and Loop (DISEMBL)
MANLNALLQKcssngavshIHIKQLQAHLtttgqfqsklfPVRSKIIEFYALSPLNELAYAHALFRqinapstndFNAVLRGlahsskptNAVLWYRQMlrgshrsdalTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKmegvfkpneVTVLGALAACghlgawkegdKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMgragvkpddVSYLAALCACNHAGLVDDGVRLFNSmancgvkpnmkhyGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEmgsnncgdfVLLSNLYAAYERWDDVGRVRKamknrdvkkvpgfsyiEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYgyaagtscvlhdigeeekenalcyhSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVynreiivrdrvrfhrfkdgacsckdyw
Flexible Loop (DISEMBL)
MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRkamknrdvkkvpgfsyievggvihkfftsdkshvkWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLiskvynreiivrdrvrfhrfkdgacsckdyw
Low Complexity Region (SEG)
MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHgfladallgttlldVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVlgalaacghlgaWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW
Disordered region (IsUnstruct)
**********CSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCK***
Disordered Region (DISOPRED)
MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW
Disordered Region (DISEMBL)
MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW
Disordered Region (DISPRO)
MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	582	2.2.26 [Sep-21-2011]
Q9FX24	581	Pentatricopeptide repeat-	yes	no	0.972	0.974	0.602	0.0
Q9LXY5	581	Pentatricopeptide repeat-	no	no	0.963	0.965	0.401	1e-127
Q9SZT8	632	Pentatricopeptide repeat-	no	no	0.974	0.897	0.396	1e-126
A8MQA3	595	Pentatricopeptide repeat-	no	no	0.989	0.968	0.399	1e-124
Q9LW32	659	Pentatricopeptide repeat-	no	no	0.934	0.825	0.414	1e-122
Q9SUH6	792	Pentatricopeptide repeat-	no	no	0.945	0.694	0.394	1e-122
Q9C6T2	606	Pentatricopeptide repeat-	no	no	0.903	0.867	0.393	1e-121
Q9FG16	622	Pentatricopeptide repeat-	no	no	0.984	0.921	0.372	1e-121
Q9FI80	646	Pentatricopeptide repeat-	no	no	0.957	0.862	0.379	1e-120
Q9SN85	591	Pentatricopeptide repeat-	no	no	0.969	0.954	0.393	1e-119

>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/589 (60%), Positives = 439/589 (74%), Gaps = 23/589 (3%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           +  ++QKC     VS   IKQLQ+H  T G FQS    +RS+++E  A+SP  +L++A  
Sbjct: 6   METMIQKC-----VSFSQIKQLQSHFLTAGHFQSSF--LRSRLLERCAISPFGDLSFAVQ 58

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH------RSDALTCSFALKA 117
           +FR I  P TND+NA++RG A SS P+ A  WYR ML+ S       R DALTCSF LKA
Sbjct: 59  IFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKA 118

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CAR L      Q+H  + R G  AD+LL TTLLD Y+K G+++SA K+FDEM VRD+ASW
Sbjct: 119 CARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASW 178

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI-HEYI 236
           NALIAGL  GN ASEA++L+KRM+ EG+ + +EVTV+ AL AC HLG  KEG+ I H Y 
Sbjct: 179 NALIAGLVSGNRASEAMELYKRMETEGI-RRSEVTVVAALGACSHLGDVKEGENIFHGYS 237

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +     NV+V NA IDMY+KCG +DKA++VF+    +KS+VTWNTM+  FAVHG+  RA
Sbjct: 238 ND-----NVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRA 292

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           LE+F+++   G+KPDDVSYLAAL AC HAGLV+ G+ +FN+MA  GV+ NMKHYG VVDL
Sbjct: 293 LEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNMKHYGCVVDL 352

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L RAGRL+EA DI+ S+SM  D VLWQ+LLGA ++Y DVEMAEIASR++ EMG NN GDF
Sbjct: 353 LSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDF 412

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+YAA  RW DVGRVR  M+++ VKK+PG SYIE  G IH+F+ SDKSH +WREIY
Sbjct: 413 VLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIY 472

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI---STSEATSI 533
           EK+DEI FKI+E GY A T  VLHDIGEEEKENALCYHSEKLAVA+GL+      E + +
Sbjct: 473 EKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPV 532

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +V  NLRIC DCH V K ISK+Y REIIVRDRVRFHRFKDG+CSC+D+W
Sbjct: 533 RVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXY5|PP284_ARATH Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1

 Score =  456 bits (1172), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/586 (40%), Positives = 374/586 (63%), Gaps = 25/586 (4%)

Query: 7   LLQKCSSNGAVSHIHIKQLQAHLTTTG-QFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           +LQ C+S   +  IH     +H+   G Q    +F   + ++ F A+S    L++A  LF
Sbjct: 11  MLQGCNSMKKLRKIH-----SHVIINGLQHHPSIF---NHLLRFCAVSVTGSLSHAQLLF 62

Query: 66  RQINA-PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLA 123
              ++ PST+D+N ++RG ++SS P N++L+Y +ML  S  R D  T +FALK+C R+ +
Sbjct: 63  DHFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKS 122

Query: 124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
           + + L+IH  V+R GFL DA++ T+L+  Y+  G +  A KVFDEM VRD+ SWN +I  
Sbjct: 123 IPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICC 182

Query: 184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM 243
            +   L ++A+ ++KRM  EGV   +  T++  L++C H+ A   G  +H    + R + 
Sbjct: 183 FSHVGLHNQALSMYKRMGNEGVCG-DSYTLVALLSSCAHVSALNMGVMLHRIACDIRCES 241

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
            V V NA+IDMYAKCG L+ A  VF+ ++ ++ ++TWN+M++ + VHG G  A+  F +M
Sbjct: 242 CVFVSNALIDMYAKCGSLENAIGVFNGMR-KRDVLTWNSMIIGYGVHGHGVEAISFFRKM 300

Query: 304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGR 362
             +GV+P+ +++L  L  C+H GLV +GV  F  M++   + PN+KHYG +VDL GRAG+
Sbjct: 301 VASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQ 360

Query: 363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
           L+ + +++ + S   D VLW+TLLG+C+++ ++E+ E+A +KLV++ + N GD+VL++++
Sbjct: 361 LENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSI 420

Query: 423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
           Y+A         +RK +++ D++ VPG+S+IE+G  +HKF   DK H +   IY +L E+
Sbjct: 421 YSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEV 480

Query: 483 MFKIKEYGY----AAGTSCVLHD--IGEEEKENALCYHSEKLAVAFGLISTSEATSIQVF 536
           + +    GY    +  T+  L D  +G  +       HSEKLA+A+GL+ T+  T++++ 
Sbjct: 481 INRAILAGYKPEDSNRTAPTLSDRCLGSADTS-----HSEKLAIAYGLMRTTAGTTLRIT 535

Query: 537 KNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           KNLR+CRDCH   K +SK +NREIIVRDRVRFH F DG CSC DYW
Sbjct: 536 KNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1

 Score =  452 bits (1164), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/613 (39%), Positives = 361/613 (58%), Gaps = 46/613 (7%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRS-KIIEFYALSPLNELAYAH 62
           L  L+ K  S   V  IH   L+ +L    ++     PV + K+   YA     ++ ++ 
Sbjct: 32  LAVLIDKSQSVDEVLQIHAAILRHNLLLHPRY-----PVLNLKLHRAYASH--GKIRHSL 84

Query: 63  ALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL 122
           ALF Q   P    F A +   + +     A L Y Q+L      +  T S  LK+C+   
Sbjct: 85  ALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS 144

Query: 123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR---------- 172
                  IH+HVL+ G   D  + T L+DVYAK G++VSA+KVFD M  R          
Sbjct: 145 GKL----IHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMIT 200

Query: 173 ---------------------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
                                DI SWN +I G AQ    ++A+ LF+++  EG  KP+E+
Sbjct: 201 CYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEI 260

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           TV+ AL+AC  +GA + G  IH +++  R+ +NV VC  +IDMY+KCG L++A  VF++ 
Sbjct: 261 TVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDT 320

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDD 330
             RK +V WN M+  +A+HG    AL LF +M G  G++P D++++  L AC HAGLV++
Sbjct: 321 P-RKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNE 379

Query: 331 GVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC 389
           G+R+F SM    G+KP ++HYG +V LLGRAG+L+ A + +K+++M  D VLW ++LG+C
Sbjct: 380 GIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSC 439

Query: 390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPG 449
           +L+GD  + +  +  L+ +   N G +VLLSN+YA+   ++ V +VR  MK + + K PG
Sbjct: 440 KLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPG 499

Query: 450 FSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKEN 509
            S IE+   +H+F   D+ H K +EIY  L +I  +IK +GY   T+ VL D+ E EKE 
Sbjct: 500 ISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQ 559

Query: 510 ALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFH 569
           +L  HSE+LA+A+GLIST   + +++FKNLR+C DCH V KLISK+  R+I++RDR RFH
Sbjct: 560 SLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFH 619

Query: 570 RFKDGACSCKDYW 582
            F DG+CSC D+W
Sbjct: 620 HFTDGSCSCGDFW 632

Arabidopsis thaliana (taxid: 3702)

>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2

 Score =  447 bits (1149), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/588 (39%), Positives = 363/588 (61%), Gaps = 12/588 (2%)

Query: 4   LNALLQKC----SSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELA 59
           L  +++KC     + G  S   ++Q+ A     G   S     +  I    +L     ++
Sbjct: 11  LLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMS 70

Query: 60  YAHALFRQINAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALK 116
           YAH +F +I  P  N F  N ++RG A      +A   YR+M + G    D  T  F +K
Sbjct: 71  YAHKVFSKIEKP-INVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIK 129

Query: 117 ACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIAS 176
           A   +  +     IHS V+R GF +   +  +LL +YA  G++ SA KVFD+M  +D+ +
Sbjct: 130 AVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVA 189

Query: 177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI 236
           WN++I G A+     EA+ L+  M  +G+ KP+  T++  L+AC  +GA   G ++H Y+
Sbjct: 190 WNSVINGFAENGKPEEALALYTEMNSKGI-KPDGFTIVSLLSACAKIGALTLGKRVHVYM 248

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +  L  N+   N ++D+YA+CG +++A  +FD +   K+ V+W ++++  AV+G G  A
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLIVGLAVNGFGKEA 307

Query: 297 LELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVV 354
           +ELF+ M    G+ P +++++  L AC+H G+V +G   F  M     ++P ++H+G +V
Sbjct: 308 IELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMV 367

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLL RAG++++A + +KS+ M  ++V+W+TLLGAC ++GD ++AE A  +++++  N+ G
Sbjct: 368 DLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSG 427

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           D+VLLSN+YA+ +RW DV ++RK M    VKKVPG S +EVG  +H+F   DKSH +   
Sbjct: 428 DYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDA 487

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY KL E+  +++  GY    S V  D+ EEEKENA+ YHSEK+A+AF LIST E + I 
Sbjct: 488 IYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPIT 547

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           V KNLR+C DCH  IKL+SKVYNREI+VRDR RFH FK+G+CSC+DYW
Sbjct: 548 VVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1

 Score =  440 bits (1132), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/557 (41%), Positives = 353/557 (63%), Gaps = 13/557 (2%)

Query: 35  FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
           +QS +F V S +I  Y  S   +L  A  +F +I   +   + +++RG   +    +AV 
Sbjct: 107 YQSDIF-VSSALIVMY--STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVS 163

Query: 95  WYRQMLRGSHRSD------ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT 148
            ++ +L   +  D      ++     + AC+RV A   T  IHS V++ GF     +G T
Sbjct: 164 LFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNT 223

Query: 149 LLDVYAKVGE--IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
           LLD YAK GE  +  A+K+FD++  +D  S+N++++  AQ  +++EA ++F+R+    V 
Sbjct: 224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVV 283

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
             N +T+   L A  H GA + G  IH+ +    L+ +V+V  ++IDMY KCG ++ A +
Sbjct: 284 TFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARK 343

Query: 267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
            FD +K  K++ +W  M+  + +HG   +ALELF  M  +GV+P+ +++++ L AC+HAG
Sbjct: 344 AFDRMK-NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query: 327 LVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
           L  +G R FN+M    GV+P ++HYG +VDLLGRAG LQ+A D+++ + M  D ++W +L
Sbjct: 403 LHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSL 462

Query: 386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
           L AC+++ +VE+AEI+  +L E+ S+NCG ++LLS++YA   RW DV RVR  MKNR + 
Sbjct: 463 LAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLV 522

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
           K PGFS +E+ G +H F   D+ H +  +IYE L E+  K+ E GY + TS V HD+ EE
Sbjct: 523 KPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582

Query: 506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
           EKE  L  HSEKLA+AFG+++T   +++ V KNLR+C DCH+VIKLISK+ +RE +VRD 
Sbjct: 583 EKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDA 642

Query: 566 VRFHRFKDGACSCKDYW 582
            RFH FKDG CSC DYW
Sbjct: 643 KRFHHFKDGGCSCGDYW 659

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1

 Score =  438 bits (1127), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/560 (39%), Positives = 338/560 (60%), Gaps = 10/560 (1%)

Query: 24  QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
           Q+ +  T TG +      V +  I  Y  S   ++    ALFR+   P    +NA++ G 
Sbjct: 242 QIHSLATKTGCYSHDY--VLTGFISLY--SKCGKIKMGSALFREFRKPDIVAYNAMIHGY 297

Query: 84  AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA 143
             + +   ++  +++++    R  + T    +     ++ ++    IH + L+  FL+ A
Sbjct: 298 TSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIY---AIHGYCLKSNFLSHA 354

Query: 144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
            + T L  VY+K+ EI SA+K+FDE   + + SWNA+I+G  Q  L  +A+ LF+ M+ +
Sbjct: 355 SVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ-K 413

Query: 204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
             F PN VT+   L+AC  LGA   G  +H+ +R    + ++ V  A+I MYAKCG + +
Sbjct: 414 SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAE 473

Query: 264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
           A  +FD +  +K+ VTWNTM+  + +HG G  AL +F +M  +G+ P  V++L  L AC+
Sbjct: 474 ARRLFD-LMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACS 532

Query: 324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
           HAGLV +G  +FNSM +  G +P++KHY  +VD+LGRAG LQ A   ++++S+     +W
Sbjct: 533 HAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVW 592

Query: 383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
           +TLLGAC+++ D  +A   S KL E+  +N G  VLLSN+++A   +     VR+  K R
Sbjct: 593 ETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKR 652

Query: 443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
            + K PG++ IE+G   H F + D+SH + +EIYEKL+++  K++E GY   T   LHD+
Sbjct: 653 KLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDV 712

Query: 503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
            EEE+E  +  HSE+LA+AFGLI+T   T I++ KNLR+C DCH V KLISK+  R I+V
Sbjct: 713 EEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVV 772

Query: 563 RDRVRFHRFKDGACSCKDYW 582
           RD  RFH FKDG CSC DYW
Sbjct: 773 RDANRFHHFKDGVCSCGDYW 792

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1

 Score =  437 bits (1124), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/528 (39%), Positives = 340/528 (64%), Gaps = 2/528 (0%)

Query: 56  NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL 115
           N + YA ++FR I+ P T DFN ++RG  +      A+ +Y +M++  +  D  T    L
Sbjct: 80  NSMNYAASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLL 139

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           KAC R+ ++ E  QIH  V + G  AD  +  +L+++Y + GE+  +  VF+++  +  A
Sbjct: 140 KACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAA 199

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           SW+++++  A   + SE + LF+ M  E   K  E  ++ AL AC + GA   G  IH +
Sbjct: 200 SWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGF 259

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           +     ++N++V  +++DMY KCG LDKA  +F  ++ R +L T++ M+   A+HG+G  
Sbjct: 260 LLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNL-TYSAMISGLALHGEGES 318

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVV 354
           AL +F +M + G++PD V Y++ L AC+H+GLV +G R+F  M   G V+P  +HYG +V
Sbjct: 319 ALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLV 378

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           DLLGRAG L+EA + ++S+ +  + V+W+T L  C++  ++E+ +IA+++L+++ S+N G
Sbjct: 379 DLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPG 438

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           D++L+SNLY+  + WDDV R R  +  + +K+ PGFS +E+ G  H+F + D+SH K +E
Sbjct: 439 DYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKE 498

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY+ L ++ +++K  GY+   + +L ++ EEEK+  L  HS+K+A+AFGL+ T   + I+
Sbjct: 499 IYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIK 558

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + +NLR+C DCH   K IS +Y REI+VRDR RFH FK G CSCKDYW
Sbjct: 559 IARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1

 Score =  435 bits (1118), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/610 (37%), Positives = 359/610 (58%), Gaps = 37/610 (6%)

Query: 6   ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
           ALLQ CSS   +  IH   L+ HL +     S+L  +      F    P N L YA+ +F
Sbjct: 17  ALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFN--KPTNLLGYAYGIF 74

Query: 66  RQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALF 125
            QI  P+   FN ++R  +  ++P+ A  +Y QML+     D +T  F +KA + +  + 
Sbjct: 75  SQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVL 134

Query: 126 ETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGL- 184
              Q HS ++R GF  D  +  +L+ +YA  G I +A ++F +MG RD+ SW +++AG  
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194

Query: 185 ------------------------------AQGNLASEAVDLFKRMKMEGVFKPNEVTVL 214
                                         A+ N   +A+DLF+ MK EGV   NE  ++
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVV-ANETVMV 253

Query: 215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR 274
             +++C HLGA + G++ +EY+ +  + +N+++  A++DM+ +CG ++KA  VF+ +   
Sbjct: 254 SVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPET 313

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
            SL +W++++   AVHG   +A+  F QM   G  P DV++ A L AC+H GLV+ G+ +
Sbjct: 314 DSL-SWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEI 372

Query: 335 FNSMA-NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG 393
           + +M  + G++P ++HYG +VD+LGRAG+L EA + +  + +  +  +   LLGAC++Y 
Sbjct: 373 YENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYK 432

Query: 394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI 453
           + E+AE     L+++   + G +VLLSN+YA   +WD +  +R  MK + VKK PG+S I
Sbjct: 433 NTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLI 492

Query: 454 EVGGVIHKF-FTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALC 512
           E+ G I+KF    D+ H +  +I  K +EI+ KI+  GY   T     D+ EEEKE+++ 
Sbjct: 493 EIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIH 552

Query: 513 YHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFK 572
            HSEKLA+A+G++ T   T+I++ KNLR+C DCH V KLIS+VY RE+IVRDR RFH F+
Sbjct: 553 MHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFR 612

Query: 573 DGACSCKDYW 582
           +G CSC+DYW
Sbjct: 613 NGVCSCRDYW 622

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1

 Score =  432 bits (1111), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/612 (37%), Positives = 361/612 (58%), Gaps = 55/612 (8%)

Query: 22  IKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLN--ELAYAHALFRQINAPSTNDFNAV 79
           + Q+ A    +GQ +  L    ++I+ F A S L+  +L YAH +F Q+   +   +N +
Sbjct: 39  LSQIHAVFIKSGQMRDTL--AAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTI 96

Query: 80  LRGLAHSSKPTNAV---LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR 136
           +RG + S +    +   L+Y  M       +  T    LKACA+   + E  QIH   L+
Sbjct: 97  IRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALK 156

Query: 137 HGFLADA---------------------------------------------LLGTTLLD 151
           +GF  D                                              +L   ++D
Sbjct: 157 YGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMID 216

Query: 152 VYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV 211
            Y ++G+  +A+ +FD+M  R + SWN +I+G +      +AV++F+ MK +G  +PN V
Sbjct: 217 GYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK-KGDIRPNYV 275

Query: 212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI 271
           T++  L A   LG+ + G+ +H Y  +  + ++ V+ +A+IDMY+KCG+++KA  VF+ +
Sbjct: 276 TLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL 335

Query: 272 KCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG 331
             R++++TW+ M+  FA+HG    A++ F +M +AGV+P DV+Y+  L AC+H GLV++G
Sbjct: 336 P-RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394

Query: 332 VRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
            R F+ M +  G++P ++HYG +VDLLGR+G L EA + + ++ +  D V+W+ LLGAC+
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACR 454

Query: 391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
           + G+VEM +  +  L++M  ++ G +V LSN+YA+   W +V  +R  MK +D++K PG 
Sbjct: 455 MQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGC 514

Query: 451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
           S I++ GV+H+F   D SH K +EI   L EI  K++  GY   T+ VL ++ EE+KEN 
Sbjct: 515 SLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENV 574

Query: 511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
           L YHSEK+A AFGLISTS    I++ KNLRIC DCH  IKLISKVY R+I VRDR RFH 
Sbjct: 575 LHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHH 634

Query: 571 FKDGACSCKDYW 582
           F+DG+CSC DYW
Sbjct: 635 FQDGSCSCMDYW 646

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1

 Score =  429 bits (1104), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/574 (39%), Positives = 344/574 (59%), Gaps = 10/574 (1%)

Query: 16  AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTN 74
           +   +H++Q+ A L  T   ++    V    +   ALS +  ++ Y+  +F Q   P+ +
Sbjct: 21  STGKLHLRQIHALLLRTSLIRNS--DVFHHFLSRLALSLIPRDINYSCRVFSQRLNPTLS 78

Query: 75  DFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVLALFETLQIHSH 133
             N ++R  + S  P      +R + R S   ++ L+ SFALK C +   L   LQIH  
Sbjct: 79  HCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCIKSGDLLGGLQIHGK 138

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           +   GFL+D+LL TTL+D+Y+       A KVFDE+  RD  SWN L +   +     + 
Sbjct: 139 IFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSCYLRNKRTRDV 198

Query: 194 VDLFKRMK--MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           + LF +MK  ++G  KP+ VT L AL AC +LGA   G ++H++I E  L   + + N +
Sbjct: 199 LVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTL 258

Query: 252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD 311
           + MY++CG +DKA++VF  ++  +++V+W  ++   A++G G  A+E F +M + G+ P+
Sbjct: 259 VSMYSRCGSMDKAYQVFYGMR-ERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPE 317

Query: 312 DVSYLAALCACNHAGLVDDGVRLFNSM--ANCGVKPNMKHYGSVVDLLGRAGRLQEACDI 369
           + +    L AC+H+GLV +G+  F+ M      +KPN+ HYG VVDLLGRA  L +A  +
Sbjct: 318 EQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSL 377

Query: 370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW 429
           +KS+ M  D  +W+TLLGAC+++GDVE+ E     L+E+ +   GD+VLL N Y+   +W
Sbjct: 378 IKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKW 437

Query: 430 DDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEY 489
           + V  +R  MK + +   PG S IE+ G +H+F   D SH +  EIY+ L EI  ++K  
Sbjct: 438 EKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIA 497

Query: 490 GYAAGTSCVLHDI-GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDV 548
           GY A  +  LH++  EEEK  AL YHSEKLA+AFG++ T   T+I+V KNLR C DCH+ 
Sbjct: 498 GYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNF 557

Query: 549 IKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
            K +S VY+R +IVRDR RFH FK G+CSC D+W
Sbjct: 558 AKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	582
224082530	578	predicted protein [Populus trichocarpa]	0.989	0.996	0.698	0.0
449446363	576	PREDICTED: pentatricopeptide repeat-cont	0.986	0.996	0.666	0.0
449494077	576	PREDICTED: LOW QUALITY PROTEIN: pentatri	0.986	0.996	0.666	0.0
225463123	573	PREDICTED: pentatricopeptide repeat-cont	0.982	0.998	0.660	0.0
334183024	581	pentatricopeptide repeat-containing prot	0.972	0.974	0.602	0.0
297846398	562	pentatricopeptide repeat-containing prot	0.883	0.914	0.615	0.0
10086462	539	Hypothetical Protein [Arabidopsis thalia	0.874	0.944	0.599	1e-176
242095216	596	hypothetical protein SORBIDRAFT_10g00797	0.951	0.929	0.547	1e-170
220061997	587	pentatricopeptide repeat protein [Oryza	0.955	0.947	0.536	1e-167
220061995	589	pentatricopeptide repeat protein [Oryza	0.955	0.943	0.534	1e-167

>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/581 (69%), Positives = 480/581 (82%), Gaps = 5/581 (0%)

Query: 2   ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYA 61
           ++L++ L KC++   +S  H KQL AHL TTGQF+  + P RSK++E YALS L  L++A
Sbjct: 3   SSLDSFLSKCTT---LSLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALS-LGNLSFA 58

Query: 62  HALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV 121
              F QI  PSTND+NA++RG   S  PTNA  WY+ M+  S + DALTCSF LKACARV
Sbjct: 59  ILTFSQIRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARV 118

Query: 122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI 181
           LA  E++QIH+H++R GF+ADALLGTTLLDVYAKVGEI SA+KVFDEM  RDIASWNALI
Sbjct: 119 LARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALI 178

Query: 182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL 241
           +G AQG+  +EA+ LFKRM+++G FKPNE++VLGAL+AC  LG +KEG+KIH YI+ ER 
Sbjct: 179 SGFAQGSKPTEALSLFKRMEIDG-FKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERF 237

Query: 242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE 301
           DMN  VCN VIDMYAKCG +DKA+ VF+++ CRK +VTWNTM+MAFA+HG+G +ALELFE
Sbjct: 238 DMNAQVCNVVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFE 297

Query: 302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG 361
           +M ++GV PDDVSYLA LCACNH GLV++G RLFNSM NCGVKPN+KHYGSVVDLLGRAG
Sbjct: 298 KMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRLFNSMENCGVKPNVKHYGSVVDLLGRAG 357

Query: 362 RLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN 421
           RL EA DIV S+    D+VLWQTLLGA + + +VE+AE  SRKLVEMGSN+CGDFVLLSN
Sbjct: 358 RLHEAYDIVNSMPTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSN 417

Query: 422 LYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDE 481
           +YAA ERW DVGRVR+AMKNRDVKKVPG SYIE  GVIHKF+ +DKSH  WREIY KLDE
Sbjct: 418 VYAARERWADVGRVREAMKNRDVKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDE 477

Query: 482 IMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
           I F++KEYGY A TS VLHDIGEE+KEN L +HSEKLAVAFGLISTSE T IQV KNLRI
Sbjct: 478 IRFRVKEYGYVAETSFVLHDIGEEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRI 537

Query: 542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           C DCH VIKLISK+Y+REIIVRDRVRFHRFK+G CSC+DYW
Sbjct: 538 CGDCHFVIKLISKIYDREIIVRDRVRFHRFKEGFCSCRDYW 578

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein At1g34160-like [Cucumis sativus]

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/584 (66%), Positives = 459/584 (78%), Gaps = 10/584 (1%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
           MA  N LLQKCSS        IKQLQA+L   G F       R+K++E  A+S   +L+Y
Sbjct: 1   MAYFNLLLQKCSSFS-----QIKQLQANLIINGDFH--FSSSRTKLLELCAISSFGDLSY 53

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML--RGSHRSDALTCSFALKAC 118
           A  +FR I  PSTND+NAV+RG A SS P NAV WYR M    G HR DALTCSFALKAC
Sbjct: 54  ALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKAC 113

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           AR LA  E +Q+HS +LR GF AD LL TTLLD YAK+G++  A+K+FDEM   DIASWN
Sbjct: 114 ARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWN 173

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ALIAG AQG+  ++A+  FKRMK++G  +PN VTV GAL AC  LGA KEG+ +H+YI E
Sbjct: 174 ALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVE 233

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           E+L+ NV VCN VIDMYAKCG +DKA+ VF+N++C KSL+TWNTM+MAFA+HGDG +AL+
Sbjct: 234 EKLNSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALD 293

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LFE++GR+G+ PD VSYLA LCACNHAGLV+DG++LFNSM   G++PN+KHYGS+VDLLG
Sbjct: 294 LFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLG 353

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAGRL+EA DIV S+    +MVLWQTLLGAC+ YGDVEMAE+ASRKLVEMG  +CGDFVL
Sbjct: 354 RAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGDFVL 412

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YAA +RWDDVGRVR AM+ RDVKK PGFSYIE+ G ++KF   D+SH   REIY K
Sbjct: 413 LSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAK 472

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           LDEI  +IK YGY+A TS VLHDIG+E+KENALCYHSEKLAVAFGL  T E T IQV KN
Sbjct: 473 LDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKN 532

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH VIKLISK+Y REIIVRDR RFHRFK+G CSCKDYW
Sbjct: 533 LRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g34160-like [Cucumis sativus]

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/584 (66%), Positives = 458/584 (78%), Gaps = 10/584 (1%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAY 60
           MA  N LLQKCSS        IKQLQA+L   G F       R+K++E  A+S   +L+Y
Sbjct: 1   MAYFNLLLQKCSSFS-----QIKQLQANLIINGDFH--FSSSRTKLLELCAISSFGDLSY 53

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQML--RGSHRSDALTCSFALKAC 118
           A  +FR I  PSTND+NAV+RG A SS P NAV WYR M    G HR DALTCSFALKAC
Sbjct: 54  ALHIFRYIPYPSTNDWNAVIRGTALSSDPANAVFWYRAMAASNGLHRIDALTCSFALKAC 113

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           AR LA  E +Q+HS +LR GF AD LL TTLLD YAK+G++  A+K+FDEM   DIASWN
Sbjct: 114 ARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWN 173

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE 238
           ALIAG AQG+  ++A+  FKRMK++G  +PN VTV GAL AC  LGA KEG+ +H+YI E
Sbjct: 174 ALIAGFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQGALLACSQLGALKEGESVHKYIVE 233

Query: 239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE 298
           E+LD NV VCN VIDMYAKCG +DKA+ VF+N++C KSL+TWNTM+MAFA+HGDG +AL+
Sbjct: 234 EKLDSNVQVCNVVIDMYAKCGSMDKAYWVFENMRCDKSLITWNTMIMAFAMHGDGHKALD 293

Query: 299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG 358
           LFE++GR+G+ PD VSYLA LCACNHAGLV+DG++LFNSM   G++PN+KHYGS+VDLLG
Sbjct: 294 LFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLKLFNSMTQRGLEPNIKHYGSMVDLLG 353

Query: 359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL 418
           RAGRL+EA DIV S+    +MVLWQTLLGAC+ YGDVEMAE+ASRKLVEMG  +CG FVL
Sbjct: 354 RAGRLKEAYDIVSSLPF-PNMVLWQTLLGACRTYGDVEMAELASRKLVEMGFISCGXFVL 412

Query: 419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEK 478
           LSN+YAA +RWDDVGRVR AM+ RDVKK PGFSYIE+ G ++KF   D+SH   REIY K
Sbjct: 413 LSNVYAARQRWDDVGRVRDAMRRRDVKKTPGFSYIEIKGKMYKFVNGDQSHSSCREIYAK 472

Query: 479 LDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKN 538
           LDEI  +IK YGY+A TS VLHDIG+E+KENALCYHSEKLAVAFGL  T E T IQV KN
Sbjct: 473 LDEINLRIKAYGYSADTSNVLHDIGDEDKENALCYHSEKLAVAFGLTCTEEGTPIQVIKN 532

Query: 539 LRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LRIC DCH VIKLISK+Y REIIVRDR RFHRFK+G CSCKDYW
Sbjct: 533 LRICGDCHVVIKLISKIYIREIIVRDRTRFHRFKEGLCSCKDYW 576

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein At1g34160-like [Vitis vinifera]

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/583 (66%), Positives = 465/583 (79%), Gaps = 11/583 (1%)

Query: 1   MANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNE-LA 59
           MA +++++QKC++       HIKQ+QAHL TTGQF  ++ P R++++E  ALSP    L 
Sbjct: 1   MAFMDSIIQKCTTLS-----HIKQVQAHLLTTGQFNLRISPSRTRLLEHCALSPSPAYLP 55

Query: 60  YAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA 119
           YA  + R I  PSTNDFNA+LRGLA    PT+A+ +   +L      DALT SF+L A A
Sbjct: 56  YAAHIHRHIPHPSTNDFNALLRGLARGPHPTHALTFLSTILH----PDALTFSFSLIASA 111

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNA 179
           R LAL ET QIHSH+LR G  AD LLGTTL+D YAK G++ SA++VFDE+ +RD+A+WNA
Sbjct: 112 RALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNA 171

Query: 180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE 239
           LIAGLAQG+ +SEA+ LF RM+ EG  K NE++VLGALAAC  LGA + G+ +H  +R+ 
Sbjct: 172 LIAGLAQGSKSSEALALFNRMRAEGE-KINEISVLGALAACSQLGALRAGEGVHACVRKM 230

Query: 240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL 299
            LD+NV VCNAVIDMYAKCG  DK F VF  + C KS+VTWNTM+MAFA+HGDG RALEL
Sbjct: 231 DLDINVQVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALEL 290

Query: 300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR 359
           FE+MG+  V+ D V+YLA LCACNHAGLV++GVRLF+ M   GV  N+KHYGSVVDLLGR
Sbjct: 291 FEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGR 350

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AGRL EA  I+ S+ +  D+VLWQ+LLGAC+ YG+VEMAE+ASRKLVEMGSN+CGDFVLL
Sbjct: 351 AGRLGEAYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVLL 410

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
           SN+YAA ERW+DVGRVR+AMK+RDV+KVPGFSYIEV GVIHKF   D+SH  WREIY KL
Sbjct: 411 SNVYAARERWEDVGRVREAMKSRDVRKVPGFSYIEVEGVIHKFVNGDQSHPDWREIYAKL 470

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           DEI F+IK +GY A TS VLHDIGEE+KENALC+HSEKLAVAFGLISTSE T I+V KNL
Sbjct: 471 DEIRFRIKAFGYVAETSLVLHDIGEEDKENALCHHSEKLAVAFGLISTSEGTPIRVNKNL 530

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           RIC DCH VIKLISK+Y++EIIVRDR RFHRFKDG+CSC+DYW
Sbjct: 531 RICGDCHVVIKLISKIYDQEIIVRDRARFHRFKDGSCSCRDYW 573

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160 gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  703 bits (1814), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/589 (60%), Positives = 439/589 (74%), Gaps = 23/589 (3%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           +  ++QKC     VS   IKQLQ+H  T G FQS    +RS+++E  A+SP  +L++A  
Sbjct: 6   METMIQKC-----VSFSQIKQLQSHFLTAGHFQSSF--LRSRLLERCAISPFGDLSFAVQ 58

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH------RSDALTCSFALKA 117
           +FR I  P TND+NA++RG A SS P+ A  WYR ML+ S       R DALTCSF LKA
Sbjct: 59  IFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKA 118

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CAR L      Q+H  + R G  AD+LL TTLLD Y+K G+++SA K+FDEM VRD+ASW
Sbjct: 119 CARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASW 178

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI-HEYI 236
           NALIAGL  GN ASEA++L+KRM+ EG+ + +EVTV+ AL AC HLG  KEG+ I H Y 
Sbjct: 179 NALIAGLVSGNRASEAMELYKRMETEGI-RRSEVTVVAALGACSHLGDVKEGENIFHGYS 237

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +     NV+V NA IDMY+KCG +DKA++VF+    +KS+VTWNTM+  FAVHG+  RA
Sbjct: 238 ND-----NVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRA 292

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           LE+F+++   G+KPDDVSYLAAL AC HAGLV+ G+ +FN+MA  GV+ NMKHYG VVDL
Sbjct: 293 LEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNMKHYGCVVDL 352

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L RAGRL+EA DI+ S+SM  D VLWQ+LLGA ++Y DVEMAEIASR++ EMG NN GDF
Sbjct: 353 LSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDF 412

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+YAA  RW DVGRVR  M+++ VKK+PG SYIE  G IH+F+ SDKSH +WREIY
Sbjct: 413 VLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIY 472

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI---STSEATSI 533
           EK+DEI FKI+E GY A T  VLHDIGEEEKENALCYHSEKLAVA+GL+      E + +
Sbjct: 473 EKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPV 532

Query: 534 QVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           +V  NLRIC DCH V K ISK+Y REIIVRDRVRFHRFKDG+CSC+D+W
Sbjct: 533 RVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRDFW 581

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846398|ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297336922|gb|EFH67339.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  652 bits (1681), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/528 (61%), Positives = 402/528 (76%), Gaps = 14/528 (2%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           +  ++Q C     V+   IKQLQ+H  T G FQS    +RS+++E  A+SP  +L++A  
Sbjct: 6   METMIQNC-----VTFSQIKQLQSHFLTAGHFQSSF--LRSRLLERCAISPFGDLSFAVK 58

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-----RSDALTCSFALKAC 118
           +FR I  P TND+NA++RG A SS P+ A  WYR ML+ S      R DALTCSF LKAC
Sbjct: 59  IFRHIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQRSSSSALCRVDALTCSFTLKAC 118

Query: 119 ARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWN 178
           AR L     +QIH  + R GF ADALL TTLLD Y+K G+++SA K+FDEM VRD+ASWN
Sbjct: 119 ARALCSSAMVQIHCQISRRGFSADALLCTTLLDAYSKNGDLISALKLFDEMSVRDVASWN 178

Query: 179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI-HEYIR 237
           ALIAGL  GN ASEA++L+KRM+MEG+ + +EVTV+ AL AC HLG  KEG+KI H YI+
Sbjct: 179 ALIAGLVAGNRASEALELYKRMEMEGI-RRSEVTVVAALGACSHLGDVKEGEKILHGYIK 237

Query: 238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
           +E+LD NV+V NAVIDMY+KCG +DKAF+VF+    +KS+VTWNTM+  F+VHG+  RAL
Sbjct: 238 DEKLDHNVIVSNAVIDMYSKCGFVDKAFQVFEQFTGKKSVVTWNTMITGFSVHGEAHRAL 297

Query: 298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL 357
           E+FE++   G+KPDDVSYLAAL AC H GLV+ G+ +FN+MA  GV+PNMKHYG VVDLL
Sbjct: 298 EIFEKLEHNGIKPDDVSYLAALTACRHTGLVEYGISIFNNMACNGVEPNMKHYGCVVDLL 357

Query: 358 GRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV 417
            RAGRL+EA DI+ S+SM  D VLWQ+LLGA +++ +VEMAEIASRK+ EMG NN GDFV
Sbjct: 358 SRAGRLREAHDIICSMSMVPDPVLWQSLLGASEIHNNVEMAEIASRKIKEMGVNNDGDFV 417

Query: 418 LLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYE 477
           LLSN+YAA  RW DVG VR  M+++ VKKVPG SYIE  G IH+F  SDKSH +WREIYE
Sbjct: 418 LLSNVYAAQGRWKDVGLVRDDMESKQVKKVPGISYIEAKGTIHQFHNSDKSHEQWREIYE 477

Query: 478 KLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
           K+DEI FKI+E GY A T  VLHDIGEEEKENALCYHSEKLAVA+GL+
Sbjct: 478 KIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLM 525

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10086462|gb|AAG12522.1|AC015446_3 Hypothetical Protein [Arabidopsis thaliana]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/529 (59%), Positives = 394/529 (74%), Gaps = 20/529 (3%)

Query: 4   LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHA 63
           +  ++QKC     VS   IKQLQ+H  T G FQS    +RS+++E  A+SP  +L++A  
Sbjct: 6   METMIQKC-----VSFSQIKQLQSHFLTAGHFQSSF--LRSRLLERCAISPFGDLSFAVQ 58

Query: 64  LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH------RSDALTCSFALKA 117
           +FR I  P TND+NA++RG A SS P+ A  WYR ML+ S       R DALTCSF LKA
Sbjct: 59  IFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKA 118

Query: 118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASW 177
           CAR L      Q+H  + R G  AD+LL TTLLD Y+K G+++SA K+FDEM VRD+ASW
Sbjct: 119 CARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASW 178

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI-HEYI 236
           NALIAGL  GN ASEA++L+KRM+ EG+ + +EVTV+ AL AC HLG  KEG+ I H Y 
Sbjct: 179 NALIAGLVSGNRASEAMELYKRMETEGI-RRSEVTVVAALGACSHLGDVKEGENIFHGYS 237

Query: 237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRA 296
            +     NV+V NA IDMY+KCG +DKA++VF+    +KS+VTWNTM+  FAVHG+  RA
Sbjct: 238 ND-----NVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRA 292

Query: 297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL 356
           LE+F+++   G+KPDDVSYLAAL AC HAGLV+ G+ +FN+MA  GV+ NMKHYG VVDL
Sbjct: 293 LEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNMKHYGCVVDL 352

Query: 357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF 416
           L RAGRL+EA DI+ S+SM  D VLWQ+LLGA ++Y DVEMAEIASR++ EMG NN GDF
Sbjct: 353 LSRAGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDF 412

Query: 417 VLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIY 476
           VLLSN+YAA  RW DVGRVR  M+++ VKK+PG SYIE  G IH+F+ SDKSH +WREIY
Sbjct: 413 VLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIY 472

Query: 477 EKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLI 525
           EK+DEI FKI+E GY A T  VLHDIGEEEKENALCYHSEKLAVA+GL+
Sbjct: 473 EKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLM 521

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor] gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 316/577 (54%), Positives = 404/577 (70%), Gaps = 23/577 (3%)

Query: 21  HIKQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSP-LNELAYAHALFRQINAPSTNDFNA 78
           H KQ  A L   G   S  +P +R++ ++  AL P  + L +A  L R +  P+TNDFNA
Sbjct: 28  HYKQFHARLHALGTLHS--YPSLRARFLDRLALLPHADALPHALLLLRSLPYPATNDFNA 85

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGSHRS-----DALTCSFALKACARVLALFETLQIHSH 133
            LRGLA S  P  ++L     L  +        DAL+ SFALKA AR    F TLQ+H+ 
Sbjct: 86  ALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAFATLQLHAI 145

Query: 134 VLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA 193
           ++R G  AD  L TTLLD YAK G++ SA++VFDEM VRD+A+WNAL+AGLAQG   + A
Sbjct: 146 LVRLGVAADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLAQGTEPNLA 205

Query: 194 VDLFKRMKMEGVFK-------PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV 246
           + LF+R+   G F+       PNEVTV+ AL+AC  LGA K+G   H++ R      NV 
Sbjct: 206 LVLFRRLA--GSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAHDFARTIGAVGNVR 263

Query: 247 VCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGR 305
           VCNA+IDMY+KCG L +A EVF +IK   ++LV++N  + A ++HG G  AL+LF++M  
Sbjct: 264 VCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDALKLFDEMP- 322

Query: 306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE 365
           A ++PD+V+YLA L  CNHAGLVDDG R+F+SM    V PNMKHYG++VDLLGRAGRL E
Sbjct: 323 ARIEPDEVTYLAVLGGCNHAGLVDDGRRVFDSMR---VPPNMKHYGTIVDLLGRAGRLAE 379

Query: 366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
           A D++  +    D+VLWQTLLGA +++G+V++AE+A+ KL ++GSN  GD+VLLSN+YA+
Sbjct: 380 AHDMIMHMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYAS 439

Query: 426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
             RW DVGRVR  M++ DVKKVPGFSY E+ GV+HKF   DK H++WREIY  LDEI  K
Sbjct: 440 KSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHLRWREIYRALDEIGSK 499

Query: 486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
           I E GY   TS VLHDIGEEEK+ AL YHSEKLA+AFGLIST    +I+V KNLRIC DC
Sbjct: 500 ICELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRICGDC 559

Query: 546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           H V KLISK Y R II+RDR RFH+F+DG CSC+DYW
Sbjct: 560 HVVAKLISKAYGRVIIIRDRARFHQFEDGQCSCRDYW 596

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]

 Score =  596 bits (1537), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 307/572 (53%), Positives = 400/572 (69%), Gaps = 16/572 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSPLNELAYAHALF-RQINAPSTNDFNA 78
           H  Q  A L T+G   +   P +R++ ++  ALSP         L  R +  P+TND NA
Sbjct: 22  HYLQFHARLLTSGHLGAH--PGLRARFLDRLALSPHPAALPHALLLLRSLPTPATNDLNA 79

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGS--HRSDALTCSFALKACARVLALFETLQIHSHVLR 136
            LRGLA S  P  ++L     L  +   R DAL+ SFALKA AR      T+Q+H+ VLR
Sbjct: 80  ALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTVQLHALVLR 139

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G  AD  L TTLLD YAK G++ SA+KVFDEM VRD+A+WN+L+AGLAQG   + A+ L
Sbjct: 140 LGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALAL 199

Query: 197 FKRM-----KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           F R+     ++    +PNEVT++ AL+AC  +G  K+G  +HE+ +   LD NV VCN++
Sbjct: 200 FHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSL 259

Query: 252 IDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           IDMY+KCG L +A +VF +IK   ++LV++N  + A ++HG G  AL LF++M    ++P
Sbjct: 260 IDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEMP-TRIEP 318

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           D V+YLA LC CNH+GLVDDG+R+FNSM    V PNMKHYG++VDLLGRAGRL EA D V
Sbjct: 319 DGVTYLAVLCGCNHSGLVDDGLRVFNSMR---VAPNMKHYGTIVDLLGRAGRLTEAYDTV 375

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
            S+    D+VLWQTLLGA +++G VE+AE+A+ KL E+GSN  GD+VLLSN+YA+  RW 
Sbjct: 376 ISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWM 435

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           DVGRVR  M++ DV+KVPGFSY E+ GV+HKF   DK H +W+EIY  L++I+ +I E G
Sbjct: 436 DVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELG 495

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           Y   TS VLHDIGEEEK+ ALCYHSEKLA+AFGLI+T    +++V KNLRIC DCH V K
Sbjct: 496 YEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAK 555

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LISK Y R I++RDR RFHRF+DG CSC+DYW
Sbjct: 556 LISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 587

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/572 (53%), Positives = 400/572 (69%), Gaps = 16/572 (2%)

Query: 21  HIKQLQAHLTTTGQFQSKLFP-VRSKIIEFYALSPLNELAYAHALF-RQINAPSTNDFNA 78
           H  Q  A L T+G   +   P +R++ ++  ALSP         L  R +  P+TND NA
Sbjct: 24  HYLQFHARLLTSGHLGAH--PGLRARFLDRLALSPHPAALPHALLLLRSLPTPATNDLNA 81

Query: 79  VLRGLAHSSKPTNAVLWYRQMLRGS--HRSDALTCSFALKACARVLALFETLQIHSHVLR 136
            LRGLA S  P  ++L     L  +   R DAL+ SFALKA AR      T+Q+H+ VLR
Sbjct: 82  ALRGLAASPHPARSLLLLAGRLLPALLPRPDALSLSFALKASARCSDAHTTVQLHALVLR 141

Query: 137 HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL 196
            G  AD  L TTLLD YAK G++ SA+KVFDEM VRD+A+WN+L+AGLAQG   + A+ L
Sbjct: 142 LGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGTEPNLALAL 201

Query: 197 FKRM-----KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV 251
           F R+     ++    +PNEVT++  L+AC  +G  K+G  +HE+ ++  LD NV VCN++
Sbjct: 202 FHRLANSFQELPSREEPNEVTIVAVLSACAQIGLLKDGMYVHEFAKKFGLDRNVRVCNSL 261

Query: 252 IDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP 310
           IDMY+KCG L +A +VF +IK   ++LV++N  + A ++HG G  AL LF++M    ++P
Sbjct: 262 IDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEMP-TRIEP 320

Query: 311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV 370
           D V+YLA LC CNH+GLVDDG+R+FNSM    V PNMKHYG++VDLLGRAGRL EA D V
Sbjct: 321 DGVTYLAVLCGCNHSGLVDDGLRVFNSMR---VAPNMKHYGTIVDLLGRAGRLTEAYDTV 377

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD 430
            S+    D+VLWQTLLGA +++G VE+AE+A+ KL E+GSN  GD+VLLSN+YA+  RW 
Sbjct: 378 ISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYASKARWM 437

Query: 431 DVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYG 490
           DVGRVR  M++ DV+KVPGFSY E+ GV+HKF   DK H +W+EIY  L++I+ +I E G
Sbjct: 438 DVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRALEDIVSRISELG 497

Query: 491 YAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIK 550
           Y   TS VLHDIGEEEK+ ALCYHSEKLA+AFGLI+T    +++V KNLRIC DCH V K
Sbjct: 498 YEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKNLRICGDCHVVAK 557

Query: 551 LISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           LISK Y R I++RDR RFHRF+DG CSC+DYW
Sbjct: 558 LISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 589

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	582
TAIR|locus:2019160	643	AT1G74630 [Arabidopsis thalian	0.737	0.667	0.421	2.9e-114
TAIR|locus:2154389	646	LPA66 "LOW PSII ACCUMULATION 6	0.735	0.662	0.438	3e-112
TAIR|locus:2102514	581	AT3G56550 [Arabidopsis thalian	0.972	0.974	0.382	1.1e-110
TAIR|locus:4010713895	595	AT4G21065 "AT4G21065" [Arabido	0.981	0.959	0.388	4.3e-109
TAIR|locus:4010713776	659	AT3G26782 [Arabidopsis thalian	0.934	0.825	0.393	6.3e-108
TAIR|locus:2131939	792	MEF29 "AT4G30700" [Arabidopsis	0.945	0.694	0.375	9.2e-107
TAIR|locus:2055919	786	AT2G22070 "AT2G22070" [Arabido	0.737	0.545	0.419	6.5e-106
TAIR|locus:2034456	606	AT1G31920 [Arabidopsis thalian	0.979	0.940	0.358	2.2e-105
TAIR|locus:2126352	632	AT4G37380 [Arabidopsis thalian	0.737	0.678	0.442	1.1e-103
TAIR|locus:2025946	638	CRR28 "CHLORORESPIRATORY REDUC	0.974	0.888	0.384	2.9e-103

TAIR|locus:2019160 AT1G74630 [Arabidopsis thaliana (taxid:3702)]

 Score = 949 (339.1 bits), Expect = 2.9e-114, Sum P(2) = 2.9e-114
 Identities = 182/432 (42%), Positives = 276/432 (63%)

Query:   153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
             Y K GE+ SAK++F EM  RD  SW+ +I G+A     +E+   F+ ++  G+  PNEV+
Sbjct:   213 YIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGM-SPNEVS 271

Query:   213 VXXXXXXXXXXXXWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
             +            ++ G  +H ++ +      V V NA+IDMY++CG +  A  VF+ ++
Sbjct:   272 LTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQ 331

Query:   273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
              ++ +V+W +M+   A+HG G  A+ LF +M   GV PD +S+++ L AC+HAGL+++G 
Sbjct:   332 EKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGE 391

Query:   333 RLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
               F+ M     ++P ++HYG +VDL GR+G+LQ+A D +  + +    ++W+TLLGAC  
Sbjct:   392 DYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSS 451

Query:   392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
             +G++E+AE   ++L E+  NN GD VLLSN YA   +W DV  +RK+M  + +KK   +S
Sbjct:   452 HGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWS 511

Query:   452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK-EYGYAAGTSCVLHDIGEEEKENA 510
              +EVG  ++KF   +K      E +EKL EI+ ++K E GY    +  L+D+ EEEKE+ 
Sbjct:   512 LVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQ 571

Query:   511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
             +  HSEKLA+AF L   S+  +I++ KNLRICRDCH V+KL SKVY  EI+VRDR RFH 
Sbjct:   572 VSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHS 631

Query:   571 FKDGACSCKDYW 582
             FKDG+CSC+DYW
Sbjct:   632 FKDGSCSCRDYW 643

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)]

 Score = 1005 (358.8 bits), Expect = 3.0e-112, Sum P(2) = 3.0e-112
 Identities = 189/431 (43%), Positives = 289/431 (67%)

Query:   153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
             Y ++G+  +A+ +FD+M  R + SWN +I+G +      +AV++F+ MK +G  +PN VT
Sbjct:   218 YMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMK-KGDIRPNYVT 276

Query:   213 VXXXXXXXXXXXXWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
             +             + G+ +H Y  +  + ++ V+ +A+IDMY+KCG+++KA  VF+ + 
Sbjct:   277 LVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLP 336

Query:   273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
              R++++TW+ M+  FA+HG    A++ F +M +AGV+P DV+Y+  L AC+H GLV++G 
Sbjct:   337 -RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGR 395

Query:   333 RLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             R F+ M +  G++P ++HYG +VDLLGR+G L EA + + ++ +  D V+W+ LLGAC++
Sbjct:   396 RYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRM 455

Query:   392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
              G+VEM +  +  L++M  ++ G +V LSN+YA+   W +V  +R  MK +D++K PG S
Sbjct:   456 QGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCS 515

Query:   452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
              I++ GV+H+F   D SH K +EI   L EI  K++  GY   T+ VL ++ EE+KEN L
Sbjct:   516 LIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVL 575

Query:   512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
              YHSEK+A AFGLISTS    I++ KNLRIC DCH  IKLISKVY R+I VRDR RFH F
Sbjct:   576 HYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHF 635

Query:   572 KDGACSCKDYW 582
             +DG+CSC DYW
Sbjct:   636 QDGSCSCMDYW 646

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0007020 "microtubule nucleation" evidence=RCA

TAIR|locus:2102514 AT3G56550 [Arabidopsis thaliana (taxid:3702)]

 Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
 Identities = 222/581 (38%), Positives = 352/581 (60%)

Query:     7 LLQKCSSNGAVSHIHIKQLQAHLTTTG-QFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
             +LQ C+S   +  IH     +H+   G Q    +F   + ++ F A+S    L++A  LF
Sbjct:    11 MLQGCNSMKKLRKIH-----SHVIINGLQHHPSIF---NHLLRFCAVSVTGSLSHAQLLF 62

Query:    66 RQINA-PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLA 123
                ++ PST+D+N ++RG ++SS P N++L+Y +ML  S  R D  T +FALK+C R+ +
Sbjct:    63 DHFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKS 122

Query:   124 LFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
             + + L+IH  V+R                Y+  G +  A KVFDEM VRD+ SWN +I  
Sbjct:   123 IPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICC 182

Query:   184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVXXXXXXXXXXXXWKEGDKIHEYIREERLDM 243
              +   L ++A+ ++KRM  EGV   +  T+               G  +H    + R + 
Sbjct:   183 FSHVGLHNQALSMYKRMGNEGVCG-DSYTLVALLSSCAHVSALNMGVMLHRIACDIRCES 241

Query:   244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM 303
              V V NA+IDMYAKCG L+ A  VF+ ++ ++ ++TWN+M++ + VHG G  A+  F +M
Sbjct:   242 CVFVSNALIDMYAKCGSLENAIGVFNGMR-KRDVLTWNSMIIGYGVHGHGVEAISFFRKM 300

Query:   304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGR 362
               +GV+P+ +++L  L  C+H GLV +GV  F  M++   + PN+KHYG +VDL GRAG+
Sbjct:   301 VASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQ 360

Query:   363 LQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL 422
             L+ + +++ + S   D VLW+TLLG+C+++ ++E+ E+A +KLV++ + N GD+VL++++
Sbjct:   361 LENSLEMIYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSI 420

Query:   423 YAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEI 482
             Y+A         +RK +++ D++ VPG+S+IE+G  +HKF   DK H +   IY +L E+
Sbjct:   421 YSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEV 480

Query:   483 MFKIKEYGYAAGTSC-VLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
             + +    GY    S      + +    +A   HSEKLA+A+GL+ T+  T++++ KNLR+
Sbjct:   481 INRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRV 540

Query:   542 CRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             CRDCH   K +SK +NREIIVRDRVRFH F DG CSC DYW
Sbjct:   541 CRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)]

 Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
 Identities = 228/587 (38%), Positives = 350/587 (59%)

Query:     7 LLQKC----SSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAH 62
             +++KC     + G  S   ++Q+ A     G   S     +  I    +L     ++YAH
Sbjct:    14 MVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAH 73

Query:    63 ALFRQINAPSTNDF--NAVLRGLAHSSKPTNAVLWYRQM-LRGSHRSDALTCSFALKACA 119
              +F +I  P  N F  N ++RG A      +A   YR+M + G    D  T  F +KA  
Sbjct:    74 KVFSKIEKP-INVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVT 132

Query:   120 RV--LALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASW 177
              +  + L ET  IHS V+R               +YA  G++ SA KVFD+M  +D+ +W
Sbjct:   133 TMADVRLGET--IHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAW 190

Query:   178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVXXXXXXXXXXXXWKEGDKIHEYIR 237
             N++I G A+     EA+ L+  M  +G+ KP+  T+               G ++H Y+ 
Sbjct:   191 NSVINGFAENGKPEEALALYTEMNSKGI-KPDGFTIVSLLSACAKIGALTLGKRVHVYMI 249

Query:   238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRAL 297
             +  L  N+   N ++D+YA+CG +++A  +FD +  + S V+W ++++  AV+G G  A+
Sbjct:   250 KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNS-VSWTSLIVGLAVNGFGKEAI 308

Query:   298 ELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVD 355
             ELF+ M    G+ P +++++  L AC+H G+V +G   F  M     ++P ++H+G +VD
Sbjct:   309 ELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVD 368

Query:   356 LLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD 415
             LL RAG++++A + +KS+ M  ++V+W+TLLGAC ++GD ++AE A  +++++  N+ GD
Sbjct:   369 LLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGD 428

Query:   416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREI 475
             +VLLSN+YA+ +RW DV ++RK M    VKKVPG S +EVG  +H+F   DKSH +   I
Sbjct:   429 YVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAI 488

Query:   476 YEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQV 535
             Y KL E+  +++  GY    S V  D+ EEEKENA+ YHSEK+A+AF LIST E + I V
Sbjct:   489 YAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITV 548

Query:   536 FKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
              KNLR+C DCH  IKL+SKVYNREI+VRDR RFH FK+G+CSC+DYW
Sbjct:   549 VKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)]

 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 219/557 (39%), Positives = 340/557 (61%)

Query:    35 FQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVL 94
             +QS +F V S +I  Y  S   +L  A  +F +I   +   + +++RG   +    +AV 
Sbjct:   107 YQSDIF-VSSALIVMY--STCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVS 163

Query:    95 WYRQMLRGSHRSD------ALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXX 148
              ++ +L   +  D      ++     + AC+RV A   T  IHS V++            
Sbjct:   164 LFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNT 223

Query:   149 XXXVYAKVGE--IVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF 206
                 YAK GE  +  A+K+FD++  +D  S+N++++  AQ  +++EA ++F+R+    V 
Sbjct:   224 LLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVV 283

Query:   207 KPNEVTVXXXXXXXXXXXXWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
               N +T+             + G  IH+ +    L+ +V+V  ++IDMY KCG ++ A +
Sbjct:   284 TFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARK 343

Query:   267 VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG 326
              FD +K  K++ +W  M+  + +HG   +ALELF  M  +GV+P+ +++++ L AC+HAG
Sbjct:   344 AFDRMK-NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAG 402

Query:   327 LVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTL 385
             L  +G R FN+M    GV+P ++HYG +VDLLGRAG LQ+A D+++ + M  D ++W +L
Sbjct:   403 LHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSL 462

Query:   386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK 445
             L AC+++ +VE+AEI+  +L E+ S+NCG ++LLS++YA   RW DV RVR  MKNR + 
Sbjct:   463 LAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLV 522

Query:   446 KVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEE 505
             K PGFS +E+ G +H F   D+ H +  +IYE L E+  K+ E GY + TS V HD+ EE
Sbjct:   523 KPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEE 582

Query:   506 EKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDR 565
             EKE  L  HSEKLA+AFG+++T   +++ V KNLR+C DCH+VIKLISK+ +RE +VRD 
Sbjct:   583 EKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDA 642

Query:   566 VRFHRFKDGACSCKDYW 582
              RFH FKDG CSC DYW
Sbjct:   643 KRFHHFKDGGCSCGDYW 659

GO:0005739 "mitochondrion" evidence=ISM;IDA

TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)]

 Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
 Identities = 210/560 (37%), Positives = 324/560 (57%)

Query:    24 QLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAVLRGL 83
             Q+ +  T TG +      V +  I  Y  S   ++    ALFR+   P    +NA++ G 
Sbjct:   242 QIHSLATKTGCYSHDY--VLTGFISLY--SKCGKIKMGSALFREFRKPDIVAYNAMIHGY 297

Query:    84 AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXX 143
               + +   ++  +++++    R  + T    +     ++ ++    IH + L+       
Sbjct:   298 TSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSHA 354

Query:   144 XXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME 203
                     VY+K+ EI SA+K+FDE   + + SWNA+I+G  Q  L  +A+ LF+ M+ +
Sbjct:   355 SVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ-K 413

Query:   204 GVFKPNEVTVXXXXXXXXXXXXWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK 263
               F PN VT+               G  +H+ +R    + ++ V  A+I MYAKCG + +
Sbjct:   414 SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAE 473

Query:   264 AFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN 323
             A  +FD +  +K+ VTWNTM+  + +HG G  AL +F +M  +G+ P  V++L  L AC+
Sbjct:   474 ARRLFD-LMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACS 532

Query:   324 HAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW 382
             HAGLV +G  +FNSM +  G +P++KHY  +VD+LGRAG LQ A   ++++S+     +W
Sbjct:   533 HAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVW 592

Query:   383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR 442
             +TLLGAC+++ D  +A   S KL E+  +N G  VLLSN+++A   +     VR+  K R
Sbjct:   593 ETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKR 652

Query:   443 DVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDI 502
              + K PG++ IE+G   H F + D+SH + +EIYEKL+++  K++E GY   T   LHD+
Sbjct:   653 KLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDV 712

Query:   503 GEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIV 562
              EEE+E  +  HSE+LA+AFGLI+T   T I++ KNLR+C DCH V KLISK+  R I+V
Sbjct:   713 EEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVV 772

Query:   563 RDRVRFHRFKDGACSCKDYW 582
             RD  RFH FKDG CSC DYW
Sbjct:   773 RDANRFHHFKDGVCSCGDYW 792

GO:0003674 "molecular_function" evidence=ND

GO:0000963 "mitochondrial RNA processing" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016554 "cytidine to uridine editing" evidence=IMP

GO:0080156 "mitochondrial mRNA modification" evidence=IMP

TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 6.5e-106, Sum P(2) = 6.5e-106
 Identities = 181/431 (41%), Positives = 268/431 (62%)

Query:   153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
             Y K+G++  AK +F  +  RD+ +W A+I G  Q     EA++LF+ M + G  +PN  T
Sbjct:   357 YIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSM-VGGGQRPNSYT 415

Query:   213 VXXXXXXXXXXXXWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
             +               G +IH    +     +V V NA+I MYAK G +  A   FD I+
Sbjct:   416 LAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIR 475

Query:   273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV 332
             C +  V+W +M++A A HG    ALELFE M   G++PD ++Y+    AC HAGLV+ G 
Sbjct:   476 CERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGR 535

Query:   333 RLFNSMANCG-VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL 391
             + F+ M +   + P + HY  +VDL GRAG LQEA + ++ + +  D+V W +LL AC++
Sbjct:   536 QYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRV 595

Query:   392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFS 451
             + ++++ ++A+ +L+ +   N G +  L+NLY+A  +W++  ++RK+MK+  VKK  GFS
Sbjct:   596 HKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFS 655

Query:   452 YIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL 511
             +IEV   +H F   D +H +  EIY  + +I  +IK+ GY   T+ VLHD+ EE KE  L
Sbjct:   656 WIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQIL 715

Query:   512 CYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRF 571
              +HSEKLA+AFGLIST + T++++ KNLR+C DCH  IK ISK+  REIIVRD  RFH F
Sbjct:   716 RHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHF 775

Query:   572 KDGACSCKDYW 582
             KDG CSC+DYW
Sbjct:   776 KDGFCSCRDYW 786

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2034456 AT1G31920 [Arabidopsis thaliana (taxid:3702)]

 Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
 Identities = 207/577 (35%), Positives = 342/577 (59%)

Query:     7 LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFR 66
             LL++C +      +H + ++  L     F S  F   S + +       N + YA ++FR
Sbjct:    36 LLKRCHNIDEFKQVHARFIKLSL-----FYSSSFSASSVLAKCAHSGWENSMNYAASIFR 90

Query:    67 QINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE 126
              I+ P T DFN ++RG  +      A+ +Y +M++  +  D  T    LKAC R+ ++ E
Sbjct:    91 GIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIRE 150

Query:   127 TLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQ 186
               QIH  V +               +Y + GE+  +  VF+++  +  ASW+++++  A 
Sbjct:   151 GKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAG 210

Query:   187 GNLASEAVDLFKRMKMEGVFKPNEVTVXXXXXXXXXXXXWKEGDKIHEYIREERLDMNVV 246
               + SE + LF+ M  E   K  E  +               G  IH ++     ++N++
Sbjct:   211 MGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNII 270

Query:   247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA 306
             V  +++DMY KCG LDKA  +F  ++ R +L T++ M+   A+HG+G  AL +F +M + 
Sbjct:   271 VQTSLVDMYVKCGCLDKALHIFQKMEKRNNL-TYSAMISGLALHGEGESALRMFSKMIKE 329

Query:   307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVVDLLGRAGRLQE 365
             G++PD V Y++ L AC+H+GLV +G R+F  M   G V+P  +HYG +VDLLGRAG L+E
Sbjct:   330 GLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEE 389

Query:   366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA 425
             A + ++S+ +  + V+W+T L  C++  ++E+ +IA+++L+++ S+N GD++L+SNLY+ 
Sbjct:   390 ALETIQSIPIEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQ 449

Query:   426 YERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFK 485
              + WDDV R R  +  + +K+ PGFS +E+ G  H+F + D+SH K +EIY+ L ++ ++
Sbjct:   450 GQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQ 509

Query:   486 IKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDC 545
             +K  GY+   + +L ++ EEEK+  L  HS+K+A+AFGL+ T   + I++ +NLR+C DC
Sbjct:   510 LKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDC 569

Query:   546 HDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
             H   K IS +Y REI+VRDR RFH FK G CSCKDYW
Sbjct:   570 HTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 606

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 191/432 (44%), Positives = 285/432 (65%)

Query:   153 YAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
             YAK G + +A+ +FD M  RDI SWN +I G AQ    ++A+ LF+++  EG  KP+E+T
Sbjct:   202 YAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEIT 261

Query:   213 VXXXXXXXXXXXXWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK 272
             V             + G  IH +++  R+ +NV VC  +IDMY+KCG L++A  VF++  
Sbjct:   262 VVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTP 321

Query:   273 CRKSLVTWNTMVMAFAVHGDGPRALELFEQM-GRAGVKPDDVSYLAALCACNHAGLVDDG 331
              RK +V WN M+  +A+HG    AL LF +M G  G++P D++++  L AC HAGLV++G
Sbjct:   322 -RKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEG 380

Query:   332 VRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ 390
             +R+F SM    G+KP ++HYG +V LLGRAG+L+ A + +K+++M  D VLW ++LG+C+
Sbjct:   381 IRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCK 440

Query:   391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGF 450
             L+GD  + +  +  L+ +   N G +VLLSN+YA+   ++ V +VR  MK + + K PG 
Sbjct:   441 LHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGI 500

Query:   451 SYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENA 510
             S IE+   +H+F   D+ H K +EIY  L +I  +IK +GY   T+ VL D+ E EKE +
Sbjct:   501 STIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQS 560

Query:   511 LCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHR 570
             L  HSE+LA+A+GLIST   + +++FKNLR+C DCH V KLISK+  R+I++RDR RFH 
Sbjct:   561 LQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHH 620

Query:   571 FKDGACSCKDYW 582
             F DG+CSC D+W
Sbjct:   621 FTDGSCSCGDFW 632

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 2.9e-103, P = 2.9e-103
 Identities = 229/596 (38%), Positives = 342/596 (57%)

Query:     6 ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALF 65
             +L + CS    +  +H   L+   TT  +  + LF +  KI++    S  +++ YA  +F
Sbjct:    53 SLAETCSDMSQLKQLHAFTLR---TTYPEEPATLF-LYGKILQLS--SSFSDVNYAFRVF 106

Query:    66 RQINAPSTNDFNAVLRGLAHS-SKPTNAVLWYRQML-RGSHRSDALTCSFALKACARVLA 123
               I   S+  +N ++R  AH  S+   A + YR+ML RG    D  T  F LKACA +  
Sbjct:   107 DSIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG 166

Query:   124 LFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAG 183
               E  Q+H  +++H              +Y   G +  A+KVFDEM  R + SWN++I  
Sbjct:   167 FSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDA 226

Query:   184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVXXXXXXXXXXXXWKEGDKIHEYI-REERLD 242
             L +      A+ LF+ M+    F+P+  T+               G   H ++ R+  +D
Sbjct:   227 LVRFGEYDSALQLFREMQRS--FEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVD 284

Query:   243 --MNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
               M+V+V N++I+MY KCG L  A +VF  ++ ++ L +WN M++ FA HG    A+  F
Sbjct:   285 VAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQ-KRDLASWNAMILGFATHGRAEEAMNFF 343

Query:   301 EQM--GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYGSVVDL 356
             ++M   R  V+P+ V+++  L ACNH G V+ G + F+ M    C ++P ++HYG +VDL
Sbjct:   344 DRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYC-IEPALEHYGCIVDL 402

Query:   357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG-DVEMAEIASRKLV------EMG 409
             + RAG + EA D+V S+ M  D V+W++LL AC   G  VE++E  +R ++      E  
Sbjct:   403 IARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESS 462

Query:   410 SNNC-GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKS 468
             + NC G +VLLS +YA+  RW+DVG VRK M    ++K PG S IE+ G+ H+FF  D S
Sbjct:   463 NGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTS 522

Query:   469 HVKWREIYEKLDEIMFKIKEYGYAAGTS-CVLHDIGEE-EKENALCYHSEKLAVAFGLIS 526
             H + ++IY++L  I  +++  GY    S   L D   +  KE +L  HSE+LA+AFGLI+
Sbjct:   523 HPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLIN 582

Query:   527 TSEATSIQVFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
                 T I++FKNLR+C DCH+V KLISKV+N EIIVRDRVRFH FKDG+CSC DYW
Sbjct:   583 LPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638

GO:0005739 "mitochondrion" evidence=ISM

GO:0004519 "endonuclease activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016556 "mRNA modification" evidence=RCA;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FX24	PPR71_ARATH	No assigned EC number	0.6027	0.9725	0.9741	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_V001163 hypothetical protein (578 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	582
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-131
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-128
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-44
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-31
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-30
pfam14432	116	pfam14432, DYW_deaminase, DYW family of nucleic ac	6e-21
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	8e-14
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-07
pfam01535	31	pfam01535, PPR, PPR repeat	6e-05
pfam01535	31	pfam01535, PPR, PPR repeat	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.001
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.002

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  404 bits (1039), Expect = e-131
 Identities = 193/521 (37%), Positives = 309/521 (59%), Gaps = 6/521 (1%)

Query: 61  AHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR 120
           A  +F ++       + A++ G   +  P  A+  Y  M + +   D +T +  L ACA 
Sbjct: 342 AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401

Query: 121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL 180
           +  L   +++H    R G ++  ++   L+++Y+K   I  A +VF  +  +D+ SW ++
Sbjct: 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER 240
           IAGL   N   EA+  F++M +    KPN VT++ AL+AC  +GA   G +IH ++    
Sbjct: 462 IAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519

Query: 241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELF 300
           +  +  + NA++D+Y +CG ++ A+  F++    K +V+WN ++  +  HG G  A+ELF
Sbjct: 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKGSMAVELF 577

Query: 301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM-ANCGVKPNMKHYGSVVDLLGR 359
            +M  +GV PD+V++++ LCAC+ +G+V  G+  F+SM     + PN+KHY  VVDLLGR
Sbjct: 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637

Query: 360 AGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL 419
           AG+L EA + +  + +  D  +W  LL AC+++  VE+ E+A++ + E+  N+ G ++LL
Sbjct: 638 AGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697

Query: 420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL 479
            NLYA   +WD+V RVRK M+   +   PG S++EV G +H F T D+SH + +EI   L
Sbjct: 698 CNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL 757

Query: 480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNL 539
           +    K+K  G A   S  + +I E  K++  C HSE+LA+AFGLI+T     I V KNL
Sbjct: 758 EGFYEKMKASGLAGSESSSMDEI-EVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNL 816

Query: 540 RICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKD 580
            +C +CH+ +K ISK+  REI VRD  +FH FKDG CSC D
Sbjct: 817 YMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  391 bits (1005), Expect = e-128
 Identities = 191/528 (36%), Positives = 307/528 (58%), Gaps = 7/528 (1%)

Query: 58  LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF--AL 115
           L  A  LF ++   +   +  ++ GL  +     A   +R+M      SDA   +F   L
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG--SDAEPRTFVVML 231

Query: 116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA 175
           +A A + +     Q+H  VL+ G + D  +   L+D+Y+K G+I  A+ VFD M  +   
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY 235
           +WN+++AG A    + EA+ L+  M+  GV   ++ T    +     L   +   + H  
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGV-SIDQFTFSIMIRIFSRLALLEHAKQAHAG 350

Query: 236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR 295
           +      +++V   A++D+Y+K G ++ A  VFD +  RK+L++WN ++  +  HG G +
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTK 409

Query: 296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA-NCGVKPNMKHYGSVV 354
           A+E+FE+M   GV P+ V++LA L AC ++GL + G  +F SM+ N  +KP   HY  ++
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469

Query: 355 DLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG 414
           +LLGR G L EA  +++       + +W  LL AC+++ ++E+  +A+ KL  MG     
Sbjct: 470 ELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529

Query: 415 DFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWRE 474
           ++V+L NLY +  R  +  +V + +K + +   P  ++IEV    H FF+ D+ H + RE
Sbjct: 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSRE 589

Query: 475 IYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQ 534
           IY+KLDE+M +I EYGY A  + +L D+ E+E++ +  YHSEKLA+AFGLI+TSE T +Q
Sbjct: 590 IYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQ 649

Query: 535 VFKNLRICRDCHDVIKLISKVYNREIIVRDRVRFHRFKDGACSCKDYW 582
           + ++ RIC+DCH VIK I+ V  REI+VRD  RFH FK G CSC DYW
Sbjct: 650 ITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  168 bits (426), Expect = 4e-44
 Identities = 88/311 (28%), Positives = 162/311 (52%), Gaps = 3/311 (0%)

Query: 76  FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL 135
           +N ++ G A +     A+  Y +ML    R D  T    L+ C  +  L    ++H+HV+
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214

Query: 136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD 195
           R GF  D  +   L+ +Y K G++VSA+ VFD M  RD  SWNA+I+G  +     E ++
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274

Query: 196 LFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY 255
           LF  M+   V  P+ +T+   ++AC  LG  + G ++H Y+ +    ++V VCN++I MY
Sbjct: 275 LFFTMRELSV-DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333

Query: 256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY 315
              G   +A +VF  ++  K  V+W  M+  +  +G   +ALE +  M +  V PD+++ 
Sbjct: 334 LSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392

Query: 316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
            + L AC   G +D GV+L       G+   +    +++++  +   + +A ++  ++  
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP- 451

Query: 376 GTDMVLWQTLL 386
             D++ W +++
Sbjct: 452 EKDVISWTSII 462

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  129 bits (325), Expect = 3e-31
 Identities = 94/322 (29%), Positives = 146/322 (45%), Gaps = 9/322 (2%)

Query: 72  STNDFNAVLRGLAHSSKPTNAVLWY---RQMLRGSHRSDALTCSFALKACARVLALFETL 128
           ST+D N+ LR L    +   A L      Q LR     DA    F L  C    A+ E  
Sbjct: 50  STHDSNSQLRALCSHGQLEQA-LKLLESMQELRVPVDEDAYVALFRL--CEWKRAVEEGS 106

Query: 129 QIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN 188
           ++ S  L         LG  +L ++ + GE+V A  VF +M  RD+ SWN L+ G A+  
Sbjct: 107 RVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAG 166

Query: 189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC 248
              EA+ L+ RM   GV +P+  T    L  CG +     G ++H ++     +++V V 
Sbjct: 167 YFDEALCLYHRMLWAGV-RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225

Query: 249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           NA+I MY KCG +  A  VFD +  R+  ++WN M+  +  +G+    LELF  M    V
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284

Query: 309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD 368
            PD ++  + + AC   G    G  +   +   G   ++    S++ +    G   EA +
Sbjct: 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA-E 343

Query: 369 IVKSVSMGTDMVLWQTLLGACQ 390
            V S     D V W  ++   +
Sbjct: 344 KVFSRMETKDAVSWTAMISGYE 365

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  125 bits (316), Expect = 3e-30
 Identities = 79/309 (25%), Positives = 146/309 (47%), Gaps = 6/309 (1%)

Query: 100 LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI 159
                   A T    ++AC  + ++     ++ HV   GF  D  +   +L ++ K G +
Sbjct: 115 AGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174

Query: 160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA 219
           + A+++FDEM  R++ASW  +I GL       EA  LF+ M  +G        V+  L A
Sbjct: 175 IDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVV-MLRA 233

Query: 220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT 279
              LG+ + G ++H  + +  +  +  V  A+IDMY+KCG ++ A  VFD +   K+ V 
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVA 292

Query: 280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA 339
           WN+M+  +A+HG    AL L+ +M  +GV  D  ++   +   +   L++   +    + 
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352

Query: 340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE 399
             G   ++    ++VDL  + GR+++A ++   +    +++ W  L+     YG+     
Sbjct: 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIAG---YGNHGRGT 408

Query: 400 IASRKLVEM 408
            A      M
Sbjct: 409 KAVEMFERM 417

Length = 697

>gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases

 Score = 88.2 bits (219), Expect = 6e-21
 Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 23/132 (17%)

Query: 448 PGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEE- 506
           PG  + E      K  + D SH          +E+  +IK  G    T  + HD+  EE 
Sbjct: 1   PGCVWSE----GKKTLSGDGSHP------TSKEELFQRIKVEGVVPETKEIGHDVDAEEF 50

Query: 507 -----KENALCYHSEKLAVAFGLISTSEATSIQVFKNL-RICRDCHDVIKLISKVYNREI 560
                K   L  H+EK A+A+GL++T      ++ K L R+C DCH+  + I+K   REI
Sbjct: 51  RDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREI 104

Query: 561 IVRDRVRFHRFK 572
           IVRD  RFH FK
Sbjct: 105 IVRDPSRFHHFK 116

A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 74.1 bits (182), Expect = 8e-14
 Identities = 51/232 (21%), Positives = 99/232 (42%), Gaps = 2/232 (0%)

Query: 167 DEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW 226
           D    +   S  + I  L       EA++LF+ ++    F     T    + AC  L + 
Sbjct: 80  DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139

Query: 227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMA 286
           +    ++ ++     + +  + N V+ M+ KCG+L  A  +FD +  R +L +W T++  
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGG 198

Query: 287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN 346
               G+   A  LF +M   G   +  +++  L A    G    G +L   +   GV  +
Sbjct: 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258

Query: 347 MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA 398
                +++D+  + G +++A  +   +   T  V W ++L    L+G  E A
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKT-TVAWNSMLAGYALHGYSEEA 309

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 67.2 bits (164), Expect = 2e-11
 Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 14/228 (6%)

Query: 149 LLDVYAKVGEIVSAKKVFDEMGVRDI----ASWNALIAGLAQGNLASEAVDLFKRMKMEG 204
           L+   A  G++  AK+V+  +   +I      +   +   +Q      A+ ++  MK +G
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644

Query: 205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD-- 262
           V KP+EV     +   GH G   +  +I +  R++ + +  V  +++  M A     +  
Sbjct: 645 V-KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL--MGACSNAKNWK 701

Query: 263 KAFEVFDNIKCRK---SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL 319
           KA E++++IK  K   ++ T N ++ A       P+ALE+  +M R G+ P+ ++Y   L
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761

Query: 320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC 367
            A       D G+ L +     G+KPN+     +  L  R  R ++AC
Sbjct: 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKAC 807

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 66/271 (24%), Positives = 114/271 (42%), Gaps = 35/271 (12%)

Query: 276 SLVTWNTMVMAFAVHG-DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL 334
           +L T+N M+M+      D   AL +   +  AG+K D   Y   +  C  +G VD    +
Sbjct: 436 TLSTFN-MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494

Query: 335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC---DIVKSVSMGTDMVLWQTLLGACQL 391
           F+ M N GV+ N+  +G+++D   RAG++ +A     I++S ++  D V++  L+ AC  
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554

Query: 392 YGDVEMAEIASRKLVEMGSNNC---GDFVLLSNLYAAYERWDDVGR---VRKAMKNRDVK 445
            G V+    A   L EM +       D + +  L  A      V R   V + +   ++K
Sbjct: 555 SGAVDR---AFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611

Query: 446 KVPGFSYIEVGGVIHKFFTSDKSHVKW-REIYEKLDEIMFKIKEYGYAAGTSCVLHDIGE 504
             P    I V         S K    +   IY+ + +   K  E  ++A     L D+  
Sbjct: 612 GTPEVYTIAVN------SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA-----LVDVAG 660

Query: 505 EEKENALCYHSEKLAVAFGLISTSEATSIQV 535
                    H+  L  AF ++  +    I++
Sbjct: 661 ---------HAGDLDKAFEILQDARKQGIKL 682

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 62.2 bits (151), Expect = 5e-10
 Identities = 74/328 (22%), Positives = 134/328 (40%), Gaps = 61/328 (18%)

Query: 120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---GVR---- 172
           RVL L +           G  AD  L TTL+   AK G++ +  +VF EM   GV     
Sbjct: 458 RVLRLVQE---------AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508

Query: 173 --------------------------------DIASWNALIAGLAQGNLASEAVDLFKRM 200
                                           D   +NALI+   Q      A D+   M
Sbjct: 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568

Query: 201 KMEGV-FKPNEVTVLGAL-AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC 258
           K E     P+ +TV GAL  AC + G      ++++ I E  +     V    ++  ++ 
Sbjct: 569 KAETHPIDPDHITV-GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627

Query: 259 GLLDKAFEVFDNIKCRKSLVTWNTMVMA----FAVH-GDGPRALELFEQMGRAGVKPDDV 313
           G  D A  ++D++K  K  V  + +  +     A H GD  +A E+ +   + G+K   V
Sbjct: 628 GDWDFALSIYDDMK--KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685

Query: 314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI---V 370
           SY + + AC++A      + L+  + +  ++P +    +++  L    +L +A ++   +
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745

Query: 371 KSVSMGTDMVLWQTLLGACQLYGDVEMA 398
           K + +  + + +  LL A +   D ++ 
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVG 773

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 49.3 bits (119), Expect = 4e-08
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY---LAALC 320
             +VT+NT++  +   G    AL+LF +M + G+KP+  +Y   +  LC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.2 bits (111), Expect = 5e-07
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT 212
           D+ ++N LI G  +     EA+ LF  MK  G+ KPN  T
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI-KPNVYT 40

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.2 bits (111), Expect = 6e-07
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK---SLVTWNTMVMAFA 288
           +VV  N +ID Y K G +++A ++F+ +K R    ++ T++ ++    
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGV 308
           VT+N+++  +   G    ALELF++M   GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 176 SWNALIAGLAQGNLASEAVDLFKRMKMEGV 205
           ++N+LI+G  +     EA++LFK MK +GV
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD 312
           VT+NT++      G    ALELF++M   G++PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 4/44 (9%)

Query: 147 TTLLDVYAKVGEIVSAKKVFDEM---GVR-DIASWNALIAGLAQ 186
            TL+D Y K G++  A K+F+EM   G++ ++ +++ LI GL +
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.6 bits (86), Expect = 0.001
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 244 NVVVCNAVIDMYAKCGLLDKAFEVFD 269
           +VV  N +ID   + G +D+A E+ D
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLD 31

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 36.2 bits (85), Expect = 0.002
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVD 355
           PD V+Y   +      G V++ ++LFN M   G+KPN+  Y  ++D
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	582
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	99.97
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.87
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.87
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.87
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.85
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.84
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.83
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.82
PRK14574	822	hmsH outer membrane protein; Provisional	99.81
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.81
PRK14574	822	hmsH outer membrane protein; Provisional	99.75
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.72
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.7
KOG2076	895	consensus RNA polymerase III transcription factor	99.63
KOG2003	840	consensus TPR repeat-containing protein [General f	99.63
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.61
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.6
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.54
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.54
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.53
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.52
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.52
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.52
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.51
KOG1126	638	consensus DNA-binding cell division cycle control	99.5
KOG2076	895	consensus RNA polymerase III transcription factor	99.5
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.49
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.48
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.47
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.47
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.46
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.46
KOG2003	840	consensus TPR repeat-containing protein [General f	99.43
KOG1126	638	consensus DNA-binding cell division cycle control	99.43
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.41
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.39
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.38
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.35
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.32
PRK12370	553	invasion protein regulator; Provisional	99.31
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.31
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.3
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.29
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.28
PF13041	50	PPR_2: PPR repeat family	99.27
PF13041	50	PPR_2: PPR repeat family	99.27
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.25
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.25
PRK12370	553	invasion protein regulator; Provisional	99.23
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.23
KOG1129	478	consensus TPR repeat-containing protein [General f	99.2
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.17
PRK11189	296	lipoprotein NlpI; Provisional	99.13
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.12
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.09
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.08
KOG1129	478	consensus TPR repeat-containing protein [General f	99.07
PRK11189	296	lipoprotein NlpI; Provisional	99.05
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.04
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.0
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.99
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.95
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.92
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.92
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.9
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.9
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.88
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.87
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.86
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.86
KOG1125	579	consensus TPR repeat-containing protein [General f	98.85
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.84
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.83
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.81
PRK04841	903	transcriptional regulator MalT; Provisional	98.76
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.76
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.73
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.73
PRK04841	903	transcriptional regulator MalT; Provisional	98.71
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.7
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.69
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.69
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.68
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.67
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.61
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.61
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.6
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.59
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.58
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.56
PF12854	34	PPR_1: PPR repeat	98.56
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.56
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.54
PRK15359	144	type III secretion system chaperone protein SscB;	98.53
PLN02789	320	farnesyltranstransferase	98.53
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.51
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.51
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.51
KOG1125	579	consensus TPR repeat-containing protein [General f	98.48
PF12854	34	PPR_1: PPR repeat	98.48
PRK15359	144	type III secretion system chaperone protein SscB;	98.46
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.42
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.41
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.4
PLN02789	320	farnesyltranstransferase	98.39
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.39
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.35
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.35
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.35
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.33
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.29
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.28
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.25
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.23
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.23
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.23
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.22
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.22
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.18
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.12
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.12
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.11
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.04
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.03
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.01
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.96
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.96
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.9
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.86
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.84
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.83
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.82
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.8
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.8
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.79
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.77
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.76
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.74
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.71
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.71
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.64
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.57
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.57
KOG0553	304	consensus TPR repeat-containing protein [General f	97.56
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.56
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.54
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.51
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.51
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.5
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.5
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.44
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.42
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.4
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.39
PRK15331	165	chaperone protein SicA; Provisional	97.38
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.38
KOG0553	304	consensus TPR repeat-containing protein [General f	97.37
PF13371	73	TPR_9: Tetratricopeptide repeat	97.36
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.36
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.36
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.31
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.29
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.29
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.27
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.26
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.22
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.19
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.19
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.18
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.16
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.16
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.14
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.13
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.11
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.1
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.09
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.06
PF12688	120	TPR_5: Tetratrico peptide repeat	97.04
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.02
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.01
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.99
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.96
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.94
PF13371	73	TPR_9: Tetratricopeptide repeat	96.91
PF13431	34	TPR_17: Tetratricopeptide repeat	96.9
PRK10803	263	tol-pal system protein YbgF; Provisional	96.89
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.87
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.86
PF12688	120	TPR_5: Tetratrico peptide repeat	96.85
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.84
PF13428	44	TPR_14: Tetratricopeptide repeat	96.77
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.76
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.65
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.61
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.5
PRK10803	263	tol-pal system protein YbgF; Provisional	96.44
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.44
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.43
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.28
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.25
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.25
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.14
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.1
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.08
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.01
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.9
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.88
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.8
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.79
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.76
KOG1585	308	consensus Protein required for fusion of vesicles	95.62
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.59
KOG3941	406	consensus Intermediate in Toll signal transduction	95.57
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.54
KOG4555	175	consensus TPR repeat-containing protein [Function	95.54
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.44
PF13512	142	TPR_18: Tetratricopeptide repeat	95.44
KOG3941	406	consensus Intermediate in Toll signal transduction	95.22
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.13
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.09
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.09
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.95
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.91
PRK15331	165	chaperone protein SicA; Provisional	94.83
PRK11906	458	transcriptional regulator; Provisional	94.73
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.63
PRK11906	458	transcriptional regulator; Provisional	94.59
PRK09687	280	putative lyase; Provisional	94.55
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.49
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.46
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.44
PRK11619	644	lytic murein transglycosylase; Provisional	94.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.37
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.31
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.3
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.29
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.29
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.19
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.15
KOG1258	577	consensus mRNA processing protein [RNA processing	94.1
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	94.08
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.05
PF13512	142	TPR_18: Tetratricopeptide repeat	93.92
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.83
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.81
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.64
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.55
KOG1585	308	consensus Protein required for fusion of vesicles	93.48
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.23
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.92
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.89
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.85
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.17
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.12
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.97
KOG4555	175	consensus TPR repeat-containing protein [Function	91.93
PF13428	44	TPR_14: Tetratricopeptide repeat	91.85
KOG4234	271	consensus TPR repeat-containing protein [General f	91.76
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.58
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.54
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.23
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.16
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.78
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	90.74
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.72
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.57
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	90.56
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.56
PRK09687	280	putative lyase; Provisional	90.51
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.27
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	90.22
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.01
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	89.98
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	89.83
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.54
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	89.47
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	89.13
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.89
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	88.56
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	88.2
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	87.92
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.64
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	87.49
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.28
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	87.17
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	87.0
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	86.87
KOG4570	418	consensus Uncharacterized conserved protein [Funct	85.08
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.76
KOG1586	288	consensus Protein required for fusion of vesicles	84.35
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.28
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	84.24
PF13431	34	TPR_17: Tetratricopeptide repeat	84.19
KOG4648	536	consensus Uncharacterized conserved protein, conta	83.94
COG3947	361	Response regulator containing CheY-like receiver a	83.85
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	83.73
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	83.52
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.45
KOG1550	552	consensus Extracellular protein SEL-1 and related	83.25
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	82.61
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	82.39
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	81.66
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	80.93
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.92
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	80.73
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	80.67
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	80.16
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	80.04

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2e-118  Score=969.99  Aligned_cols=572  Identities=34%  Similarity=0.615  Sum_probs=563.7

Q ss_pred             cchHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHH
Q 007998            2 ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVL   80 (582)
Q Consensus         2 ~~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li   80 (582)
                      .+|.++|++|+..+  +++.|+++|..+++.|+.+|  +.++   |+|+++|++ |++++|+++|++|+.||+++||++|
T Consensus       124 ~t~~~ll~a~~~~~--~~~~a~~l~~~m~~~g~~~~--~~~~---n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li  196 (697)
T PLN03081        124 STYDALVEACIALK--SIRCVKAVYWHVESSGFEPD--QYMM---NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTII  196 (697)
T ss_pred             HHHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCCcc--hHHH---HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHH
Confidence            36899999999954  69999999999999999999  8886   899999999 9999999999999999999999999


Q ss_pred             HHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 007998           81 RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV  160 (582)
Q Consensus        81 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  160 (582)
                      .+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+.|+.||..++|+||++|+++|+++
T Consensus       197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~  276 (697)
T PLN03081        197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE  276 (697)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998          161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER  240 (582)
Q Consensus       161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~  240 (582)
                      +|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+ .||..||++++.+|++.|++++|.++|..|.+.|
T Consensus       277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g  355 (697)
T PLN03081        277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV-SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG  355 (697)
T ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998          241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC  320 (582)
Q Consensus       241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (582)
                      +.||..++++|+++|+++|++++|.++|++|. +||+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus       356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~  434 (697)
T PLN03081        356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS  434 (697)
T ss_pred             CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007998          321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~  399 (582)
                      +|++.|++++|.++|+.|.+ +|+.|+..+|++|+++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|.
T Consensus       435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~  514 (697)
T PLN03081        435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGR  514 (697)
T ss_pred             HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence            99999999999999999998 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 007998          400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL  479 (582)
Q Consensus       400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l  479 (582)
                      .+++++.+++|++..+|..|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.|++|+.+||+.+++++.+
T Consensus       515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l  594 (697)
T PLN03081        515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKL  594 (697)
T ss_pred             HHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCcccCCccccccCChhhhhhhcccccHHHHHHHHhhcCCCCCcEEEecccccCCCchhhHHHHhhhhCce
Q 007998          480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE  559 (582)
Q Consensus       480 ~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~s~~~~~~  559 (582)
                      +++..+|++.||+||+.+++|++++++|+..+.+||||||++|||+++|||+||||+||||+|+|||+|+|+||++.+|+
T Consensus       595 ~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~  674 (697)
T PLN03081        595 DELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKRE  674 (697)
T ss_pred             HHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCccccccCCccCCCCCC
Q 007998          560 IIVRDRVRFHRFKDGACSCKDYW  582 (582)
Q Consensus       560 ~~~~~~~~~h~f~~g~csc~~~~  582 (582)
                      |||||.+|||||+||+|||+|||
T Consensus       675 i~~rd~~rfh~f~~g~csc~d~w  697 (697)
T PLN03081        675 IVVRDASRFHHFKLGKCSCGDYW  697 (697)
T ss_pred             EEEecCCccccCCCCcccccccC
Confidence            99999999999999999999999

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=6.2e-113  Score=948.55  Aligned_cols=567  Identities=35%  Similarity=0.657  Sum_probs=555.4

Q ss_pred             cchHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHH
Q 007998            2 ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVL   80 (582)
Q Consensus         2 ~~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li   80 (582)
                      .+|.++|++|+..+  +++.|+++|..+.+.|+.+|  ..++   |+|+.+|++ |++++|.++|++|+.||+++||++|
T Consensus       289 ~ty~~ll~a~~~~g--~~~~a~~l~~~~~~~g~~~d--~~~~---n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li  361 (857)
T PLN03077        289 MTITSVISACELLG--DERLGREMHGYVVKTGFAVD--VSVC---NSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI  361 (857)
T ss_pred             hHHHHHHHHHHhcC--ChHHHHHHHHHHHHhCCccc--hHHH---HHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence            37899999999954  69999999999999999999  8886   899999999 9999999999999999999999999


Q ss_pred             HHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 007998           81 RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV  160 (582)
Q Consensus        81 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  160 (582)
                      .+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|+++
T Consensus       362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~  441 (857)
T PLN03077        362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID  441 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998          161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER  240 (582)
Q Consensus       161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~  240 (582)
                      +|.++|++|.++|+++||+||.+|.++|+.++|+++|++|.. ++ +||..||++++.+|++.|+++.+.++|..+.+.|
T Consensus       442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~-~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g  519 (857)
T PLN03077        442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL-KPNSVTLIAALSACARIGALMCGKEIHAHVLRTG  519 (857)
T ss_pred             HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC-CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999986 56 9999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998          241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC  320 (582)
Q Consensus       241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (582)
                      +.+|..++|+|+++|+++|++++|+++|+.+  .||+.+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.
T Consensus       520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~  597 (857)
T PLN03077        520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC  597 (857)
T ss_pred             CCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence            9999999999999999999999999999998  79999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007998          321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~  399 (582)
                      +|++.|++++|.++|+.|.+ +|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++
T Consensus       598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e  677 (857)
T PLN03077        598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE  677 (857)
T ss_pred             HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence            99999999999999999995 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 007998          400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKL  479 (582)
Q Consensus       400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l  479 (582)
                      .+.+++++++|+++..|+.|+++|+..|+|++|.++++.|+++|++|.||+|||++++++|.|.+||.+||+.++++..|
T Consensus       678 ~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l  757 (857)
T PLN03077        678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVL  757 (857)
T ss_pred             HHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCcccCCccccccCChhhhhhhcccccHHHHHHHHhhcCCCCCcEEEecccccCCCchhhHHHHhhhhCce
Q 007998          480 DEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATSIQVFKNLRICRDCHDVIKLISKVYNRE  559 (582)
Q Consensus       480 ~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~s~~~~~~  559 (582)
                      +++..+|++.||+||+..++ +.++++|+..+++||||||++|||++||||+||||+||||+|+|||+++|+||++.+|+
T Consensus       758 ~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~  836 (857)
T PLN03077        758 EGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRRE  836 (857)
T ss_pred             HHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeE
Confidence            99999999999999999888 55788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCccccccCCccCCCC
Q 007998          560 IIVRDRVRFHRFKDGACSCKD  580 (582)
Q Consensus       560 ~~~~~~~~~h~f~~g~csc~~  580 (582)
                      |||||.+|||||++|+|||+|
T Consensus       837 i~~rd~~rfh~f~~g~csc~d  857 (857)
T PLN03077        837 ISVRDTEQFHHFKDGECSCGD  857 (857)
T ss_pred             EEEecCCcceeCCCCcccCCC
Confidence            999999999999999999998

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.2e-70  Score=610.37  Aligned_cols=533  Identities=21%  Similarity=0.328  Sum_probs=480.5

Q ss_pred             chHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHHH
Q 007998            3 NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVLR   81 (582)
Q Consensus         3 ~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~   81 (582)
                      +|..++++|+..  +++..|+++|..+++.|..++  +.+.   |+|+++|++ |+++.|+++|++|++||+++||++|.
T Consensus        88 ~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~--~~~~---n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~  160 (857)
T PLN03077         88 AYVALFRLCEWK--RAVEEGSRVCSRALSSHPSLG--VRLG---NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG  160 (857)
T ss_pred             HHHHHHHHHhhC--CCHHHHHHHHHHHHHcCCCCC--chHH---HHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHH
Confidence            578899999984  459999999999999999888  8876   899999999 99999999999999999999999999


Q ss_pred             HHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 007998           82 GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS  161 (582)
Q Consensus        82 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  161 (582)
                      +|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+.+++..+.+.|+.||..++|+||++|+++|++++
T Consensus       161 ~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~  240 (857)
T PLN03077        161 GYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS  240 (857)
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCC
Q 007998          162 AKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL  241 (582)
Q Consensus       162 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~  241 (582)
                      |.++|++|+.+|+++||+||.+|++.|++++|+++|++|...|+ .||..||+.++.+|++.|+.+.|.+++..+.+.|+
T Consensus       241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~-~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~  319 (857)
T PLN03077        241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV-DPDLMTITSVISACELLGDERLGREMHGYVVKTGF  319 (857)
T ss_pred             HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007998          242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA  321 (582)
Q Consensus       242 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  321 (582)
                      .||..+||+|+++|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+
T Consensus       320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a  398 (857)
T PLN03077        320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA  398 (857)
T ss_pred             ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence            9999999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007998          322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIA  401 (582)
Q Consensus       322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~  401 (582)
                      |++.|+++.|.++++.|.+.|+.|+..+|++|+++|+++|++++|.++|++|+ +||..+|++++.+|.+.|+.++|..+
T Consensus       399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~l  477 (857)
T PLN03077        399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIF  477 (857)
T ss_pred             HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999997 57999999999999999999999999


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC-----------------------------cccE
Q 007998          402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP-----------------------------GFSY  452 (582)
Q Consensus       402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----------------------------~~s~  452 (582)
                      |++|.+.-++|..+|..++.+|++.|..+.+.+++..|.+.|+.++.                             ..+|
T Consensus       478 f~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~  557 (857)
T PLN03077        478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW  557 (857)
T ss_pred             HHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhH
Confidence            99998754556677777666666666665555555555555544322                             1245


Q ss_pred             EEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhc---ccccHHHHHHHHhhcCCC
Q 007998          453 IEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL---CYHSEKLAVAFGLISTSE  529 (582)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~e~la~~~~~~~~~~  529 (582)
                      .       .++.|+..|++.+++..    ++.+|.+.|+.||..++..-+..+.+.+.+   ....+.+.-.||+.++..
T Consensus       558 n-------~lI~~~~~~G~~~~A~~----lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~  626 (857)
T PLN03077        558 N-------ILLTGYVAHGKGSMAVE----LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK  626 (857)
T ss_pred             H-------HHHHHHHHcCCHHHHHH----HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence            4       45677888999988876    666789999999998876655555444332   334455555678777765


Q ss_pred             CCcEEEecccccCCCchhhHHHHhhhhC
Q 007998          530 ATSIQVFKNLRICRDCHDVIKLISKVYN  557 (582)
Q Consensus       530 ~~~~~~~~~l~~~~~~h~~~~~~s~~~~  557 (582)
                      ++. ++++.+.++|+..+|.++|.+|+.
T Consensus       627 ~y~-~lv~~l~r~G~~~eA~~~~~~m~~  653 (857)
T PLN03077        627 HYA-CVVDLLGRAGKLTEAYNFINKMPI  653 (857)
T ss_pred             HHH-HHHHHHHhCCCHHHHHHHHHHCCC
Confidence            555 799999999999999999999863

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.6e-60  Score=520.00  Aligned_cols=523  Identities=16%  Similarity=0.219  Sum_probs=360.8

Q ss_pred             hHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHHHH
Q 007998            4 LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAVLRG   82 (582)
Q Consensus         4 ~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~   82 (582)
                      |..++..|..  .++++.|.+++..|.+.|+.+.. ....   +.++..|.+ |.+++|.++|+.|+.||..+||.+|.+
T Consensus       373 ~~~~y~~l~r--~G~l~eAl~Lfd~M~~~gvv~~~-~v~~---~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a  446 (1060)
T PLN03218        373 YIDAYNRLLR--DGRIKDCIDLLEDMEKRGLLDMD-KIYH---AKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV  446 (1060)
T ss_pred             HHHHHHHHHH--CcCHHHHHHHHHHHHhCCCCCch-HHHH---HHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4455555555  33577777777777777754320 2232   567777777 777777777777777777777777777


Q ss_pred             HHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 007998           83 LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA  162 (582)
Q Consensus        83 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A  162 (582)
                      |++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||++|++.|++++|
T Consensus       447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA  526 (1060)
T PLN03218        447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA  526 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHHH--cCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHH
Q 007998          163 KKVFDEMG----VRDIASWNALIAGLAQGNLASEAVDLFKRMKM--EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI  236 (582)
Q Consensus       163 ~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~  236 (582)
                      .++|++|.    .||..+||.||.+|++.|++++|.++|++|..  .|+ .||..||++++.+|++.|++++|.++|+.|
T Consensus       527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi-~PD~vTynaLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI-DPDHITVGALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            77777774    46777777777777777777777777777765  456 777777777777777777777777777777


Q ss_pred             HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH
Q 007998          237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV  313 (582)
Q Consensus       237 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  313 (582)
                      .+.|+.|+..+|+++|.+|++.|++++|.++|++|.   ..||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus       606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~  685 (1060)
T PLN03218        606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV  685 (1060)
T ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            777777777777777777777777777777777775   45777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHH
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV---SMGTDMVLWQTLLGACQ  390 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~  390 (582)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|   ++.||..+|++++.+|.
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~  765 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE  765 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777776   56777777777777777


Q ss_pred             hcCChHHHHHHHHHHHHcCC-CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC-ccCCcccEEEECCEEEEEEeCCCC
Q 007998          391 LYGDVEMAEIASRKLVEMGS-NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV-KKVPGFSYIEVGGVIHKFFTSDKS  468 (582)
Q Consensus       391 ~~g~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~  468 (582)
                      +.|++++|.+++++|.+.+. ++..+|..|+.+|.  ++++++..+.+.+..-+. ......+|                
T Consensus       766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g~~~~~n~w----------------  827 (1060)
T PLN03218        766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSGRPQIENKW----------------  827 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhccccccccch----------------
Confidence            77777777777777777652 35566776665543  234444444333221110 00000111                


Q ss_pred             CcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhcccccHHHHHHHHhhcCCCCCc--EEEecccccCCCch
Q 007998          469 HVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENALCYHSEKLAVAFGLISTSEATS--IQVFKNLRICRDCH  546 (582)
Q Consensus       469 ~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~--~~~~~~l~~~~~~h  546 (582)
                         ..++.    .++++|.+.|+.||..++...+ .+-....-......+--.+++.+.+++..  ..+++.+  |..-+
T Consensus       828 ---~~~Al----~lf~eM~~~Gi~Pd~~T~~~vL-~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~  897 (1060)
T PLN03218        828 ---TSWAL----MVYRETISAGTLPTMEVLSQVL-GCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDP  897 (1060)
T ss_pred             ---HHHHH----HHHHHHHHCCCCCCHHHHHHHH-HHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChH
Confidence               23344    3778999999999987664433 22110000112234444456666655532  2345543  11125


Q ss_pred             hhHHHHhhhhCceEE
Q 007998          547 DVIKLISKVYNREII  561 (582)
Q Consensus       547 ~~~~~~s~~~~~~~~  561 (582)
                      +|..++..|..+.|+
T Consensus       898 ~A~~l~~em~~~Gi~  912 (1060)
T PLN03218        898 RAFSLLEEAASLGVV  912 (1060)
T ss_pred             HHHHHHHHHHHcCCC
Confidence            799999888877553

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=3.5e-60  Score=517.29  Aligned_cols=438  Identities=19%  Similarity=0.267  Sum_probs=406.8

Q ss_pred             cchHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC----CCChhHH
Q 007998            2 ANLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN----APSTNDF   76 (582)
Q Consensus         2 ~~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~----~~~~~~~   76 (582)
                      .+|..+|++|+.  .++++.|.++|..|.+.|+.+|  ..++   |+||.+|++ |++++|.++|++|.    .||.++|
T Consensus       438 ~Tyn~LL~a~~k--~g~~e~A~~lf~~M~~~Gl~pD--~~ty---nsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy  510 (1060)
T PLN03218        438 STFNMLMSVCAS--SQDIDGALRVLRLVQEAGLKAD--CKLY---TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF  510 (1060)
T ss_pred             HHHHHHHHHHHh--CcCHHHHHHHHHHHHHcCCCCC--HHHH---HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence            368899999998  4569999999999999999999  8886   899999999 99999999999997    6899999


Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCchHHHHHHHHHHH
Q 007998           77 NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR--HGFLADALLGTTLLDVYA  154 (582)
Q Consensus        77 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~  154 (582)
                      |+||.+|++.|++++|+++|++|...|+.||..||+.+|.+|++.|++++|.++|+.|.+  .|+.||..+|++||.+|+
T Consensus       511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~  590 (1060)
T PLN03218        511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA  590 (1060)
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999986  678999999999999999


Q ss_pred             hcCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHH
Q 007998          155 KVGEIVSAKKVFDEMGV----RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD  230 (582)
Q Consensus       155 ~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~  230 (582)
                      ++|++++|.++|+.|.+    ++..+||++|.+|++.|++++|+++|++|.+.|+ .||..||+.++.+|++.|++++|.
T Consensus       591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv-~PD~~TynsLI~a~~k~G~~eeA~  669 (1060)
T PLN03218        591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV-KPDEVFFSALVDVAGHAGDLDKAF  669 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999964    5779999999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC
Q 007998          231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG  307 (582)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  307 (582)
                      ++|++|.+.|+.||..+|++||.+|+++|++++|.++|++|.   ..||..+||+||.+|++.|++++|+++|++|.+.|
T Consensus       670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G  749 (1060)
T PLN03218        670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG  749 (1060)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999995   47999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh----cC-------------------CHH
Q 007998          308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR----AG-------------------RLQ  364 (582)
Q Consensus       308 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g-------------------~~~  364 (582)
                      +.||..||+.++.+|++.|++++|.++|++|.+.|+.||..+|++|+.++.+    ++                   ..+
T Consensus       750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~  829 (1060)
T PLN03218        750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS  829 (1060)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence            9999999999999999999999999999999999999999999999976432    22                   246


Q ss_pred             HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          365 EACDIVKSV---SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG-SNNCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       365 ~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      +|..+|++|   ++.||..+|+.++.++...+..+.+..+++.+.... +.+..+|..|++++.+.  .++|..++++|.
T Consensus       830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~  907 (1060)
T PLN03218        830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA  907 (1060)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence            799999998   889999999999987778888888888888765433 55778999999987322  368999999999


Q ss_pred             hCCCccCCc
Q 007998          441 NRDVKKVPG  449 (582)
Q Consensus       441 ~~~~~~~~~  449 (582)
                      +.|+.|...
T Consensus       908 ~~Gi~p~~~  916 (1060)
T PLN03218        908 SLGVVPSVS  916 (1060)
T ss_pred             HcCCCCCcc
Confidence            999988764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.2e-60  Score=514.96  Aligned_cols=486  Identities=20%  Similarity=0.314  Sum_probs=428.4

Q ss_pred             CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHH
Q 007998           70 APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT  148 (582)
Q Consensus        70 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  148 (582)
                      .++..+|+++|.++.+.|++++|+++|++|...+ ..||..+|+.++.+|++.++++.|.+++..|.+.|+.||..++|.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            3577899999999999999999999999998764 789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHH
Q 007998          149 LLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE  228 (582)
Q Consensus       149 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~  228 (582)
                      |+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+ .||..||+.++.+|++.|..+.
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~-~p~~~t~~~ll~a~~~~~~~~~  242 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS-DAEPRTFVVMLRASAGLGSARA  242 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCChhhHHHHHHHHhcCCcHHH
Confidence            999999999999999999999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC
Q 007998          229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV  308 (582)
Q Consensus       229 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  308 (582)
                      +.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|. ++|+++||+||.+|++.|+.++|+++|++|.+.|+
T Consensus       243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~  321 (697)
T PLN03081        243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV  321 (697)
T ss_pred             HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007998          309 KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGA  388 (582)
Q Consensus       309 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~  388 (582)
                      .||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. +||..+|++|+.+
T Consensus       322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~  400 (697)
T PLN03081        322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAG  400 (697)
T ss_pred             CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999997 5899999999999


Q ss_pred             HHhcCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHhcCCchHHHHHHHHHHh-CCCccCC-cccEEEECCEEEEEEeC
Q 007998          389 CQLYGDVEMAEIASRKLVEMG-SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN-RDVKKVP-GFSYIEVGGVIHKFFTS  465 (582)
Q Consensus       389 ~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-~~~~~~~-~~s~~~~~~~~~~~~~~  465 (582)
                      |.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|..++|.++|+.|.+ .|+.|.. .++         .++.+
T Consensus       401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~---------~li~~  471 (697)
T PLN03081        401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA---------CMIEL  471 (697)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH---------hHHHH
Confidence            999999999999999999876 34788999999999999999999999999985 5877654 222         23445


Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhhhhhc---ccccHHHHHHHHhhcCCCCCcEEEecccccC
Q 007998          466 DKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEKENAL---CYHSEKLAVAFGLISTSEATSIQVFKNLRIC  542 (582)
Q Consensus       466 ~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~---~~~~e~la~~~~~~~~~~~~~~~~~~~l~~~  542 (582)
                      +...+..+++++.+       ++.++.|+..++..-+..+.+...+   ....+++   +++.+...++.+.+++-+..+
T Consensus       472 l~r~G~~~eA~~~~-------~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l---~~~~p~~~~~y~~L~~~y~~~  541 (697)
T PLN03081        472 LGREGLLDEAYAMI-------RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL---YGMGPEKLNNYVVLLNLYNSS  541 (697)
T ss_pred             HHhcCCHHHHHHHH-------HHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH---hCCCCCCCcchHHHHHHHHhC
Confidence            56677788887644       4568888876543222222221111   1111111   344444445566677788999


Q ss_pred             CCchhhHHHHhhhhCceE-------EEecCCccccccCCccC
Q 007998          543 RDCHDVIKLISKVYNREI-------IVRDRVRFHRFKDGACS  577 (582)
Q Consensus       543 ~~~h~~~~~~s~~~~~~~-------~~~~~~~~h~f~~g~cs  577 (582)
                      |+..+|.+++.+|..+.+       .+.-.+..|.|..|-.+
T Consensus       542 G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~  583 (697)
T PLN03081        542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL  583 (697)
T ss_pred             CCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCC
Confidence            999999999998776643       24556778999777544

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=99.97  E-value=3.1e-31  Score=213.25  Aligned_cols=106  Identities=62%  Similarity=1.007  Sum_probs=96.7

Q ss_pred             cccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCccccccCChhhh--------hhhcccccHHHHH
Q 007998          449 GFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVLHDIGEEEK--------ENALCYHSEKLAV  520 (582)
Q Consensus       449 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~  520 (582)
                      |+||+++    |.|++|+.+||+.        ++..++...||.|++..+.|+++++++        +..++.||||||+
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi   69 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI   69 (116)
T ss_pred             CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence            6899877    9999999999998        355677889999999999988877765        5678999999999


Q ss_pred             HHHhhcCCCCCcEEEeccc-ccCCCchhhHHHHhhhhCceEEEecCCcccccc
Q 007998          521 AFGLISTSEATSIQVFKNL-RICRDCHDVIKLISKVYNREIIVRDRVRFHRFK  572 (582)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~l-~~~~~~h~~~~~~s~~~~~~~~~~~~~~~h~f~  572 (582)
                      +|||+++      |++||+ |||+|||+++|+||++++|+|+|||.+|||||+
T Consensus        70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk  116 (116)
T PF14432_consen   70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK  116 (116)
T ss_pred             Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence            9999998      899998 999999999999999999999999999999996

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=1.3e-25  Score=254.19  Aligned_cols=413  Identities=12%  Similarity=0.043  Sum_probs=294.3

Q ss_pred             cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHH
Q 007998           17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNA   92 (582)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A   92 (582)
                      ++.+.+..+...+.+... .+  +.+   |+.+...|.. |++++|.+.|+++.   +.+...+..+...+...|++++|
T Consensus       445 ~~~~~A~~~~~~~~~~~~-~~--~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  518 (899)
T TIGR02917       445 GQFDKALAAAKKLEKKQP-DN--ASL---HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA  518 (899)
T ss_pred             CCHHHHHHHHHHHHHhCC-CC--cHH---HHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            357777777777765432 22  333   3677777777 88888888887653   34556677777788888888888


Q ss_pred             HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--
Q 007998           93 VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG--  170 (582)
Q Consensus        93 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--  170 (582)
                      .+.|+++...++ .+..++..+...+...|+.++|...++.+.+.+ +.+...+..++..|.+.|++++|..+++.+.  
T Consensus       519 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  596 (899)
T TIGR02917       519 IQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA  596 (899)
T ss_pred             HHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            888888876542 355677777777777888888888888877664 3455667777788888888888888887764  


Q ss_pred             -CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHH
Q 007998          171 -VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN  249 (582)
Q Consensus       171 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  249 (582)
                       ..+...|..+...|.+.|++++|+..|+++.+..  +.+...+..+..++...|++++|..+++.+.+.. +.+...+.
T Consensus       597 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  673 (899)
T TIGR02917       597 APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI  673 (899)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence             2356677888888888888888888888877664  4566677777777777888888888888777654 33566777


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 007998          250 AVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL  327 (582)
Q Consensus       250 ~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  327 (582)
                      .++..+.+.|++++|.++++.+.  .+.+...+..+...+...|++++|+..|+++...  .|+..++..+..++.+.|+
T Consensus       674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~  751 (899)
T TIGR02917       674 GLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGN  751 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCC
Confidence            77777888888888887777765  2345666777777777778888888887777764  3444666667777777777


Q ss_pred             HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998          328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKL  405 (582)
Q Consensus       328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  405 (582)
                      +++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+++ ... ++..++..+...+...|+ ++|+..++++
T Consensus       752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~  829 (899)
T TIGR02917       752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA  829 (899)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence            777777777777632 345666777777777777777777777765 222 356677777777777777 6677777777


Q ss_pred             HHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       406 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ++..|+++..+..++.+|...|++++|...++++.+.+.
T Consensus       830 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       830 LKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            777777777777777777777777777777777776554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=2e-25  Score=252.67  Aligned_cols=412  Identities=10%  Similarity=-0.027  Sum_probs=352.4

Q ss_pred             cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHH
Q 007998           17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNA   92 (582)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A   92 (582)
                      ++.+.+...+..+++.....   +...   ..++..|.+ |++++|.++++.+.   +++...|+.+...+...|++++|
T Consensus       411 ~~~~~A~~~~~~a~~~~~~~---~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  484 (899)
T TIGR02917       411 GDPSEAIADLETAAQLDPEL---GRAD---LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKA  484 (899)
T ss_pred             CChHHHHHHHHHHHhhCCcc---hhhH---HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHH
Confidence            35788888888887765332   2222   567788888 99999999999875   35677899999999999999999


Q ss_pred             HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--
Q 007998           93 VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG--  170 (582)
Q Consensus        93 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--  170 (582)
                      .+.|+++.+..+ .+...+..+...+...|++++|.+.++.+++.. +.+..++..+...|.+.|+.++|...|+++.  
T Consensus       485 ~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  562 (899)
T TIGR02917       485 REAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL  562 (899)
T ss_pred             HHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999987542 345567778888999999999999999999875 4477889999999999999999999999874  


Q ss_pred             -CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHH
Q 007998          171 -VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN  249 (582)
Q Consensus       171 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  249 (582)
                       ..+...+..++..|.+.|++++|+++++++....  +.+..+|..+..++...|++++|...++.+.+.. +.+...+.
T Consensus       563 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  639 (899)
T TIGR02917       563 NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALL  639 (899)
T ss_pred             CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence             3356788899999999999999999999998765  6788899999999999999999999999998875 34677888


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 007998          250 AVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL  327 (582)
Q Consensus       250 ~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  327 (582)
                      .+...|.+.|++++|...|+++.  .+.+..+|..++..+...|++++|..+++.+.+.. +++...+..+...+...|+
T Consensus       640 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~  718 (899)
T TIGR02917       640 LLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKD  718 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCC
Confidence            99999999999999999999765  24567899999999999999999999999998864 4566778888889999999


Q ss_pred             HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998          328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKL  405 (582)
Q Consensus       328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  405 (582)
                      +++|...|+.+...+  |+...+..+..+|.+.|++++|.+.++++ ... .+..++..+...|...|++++|...|+++
T Consensus       719 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  796 (899)
T TIGR02917       719 YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTV  796 (899)
T ss_pred             HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            999999999998843  55577778899999999999999999887 323 47888889999999999999999999999


Q ss_pred             HHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       406 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ++.+|+++..+..++.++...|+ .+|...++++.+..
T Consensus       797 ~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~  833 (899)
T TIGR02917       797 VKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA  833 (899)
T ss_pred             HHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence            99999999999999999999999 88999999887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-20  Score=184.25  Aligned_cols=377  Identities=14%  Similarity=0.098  Sum_probs=240.0

Q ss_pred             HHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHH-HHHHHHh
Q 007998           46 IIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF-ALKACAR  120 (582)
Q Consensus        46 ~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~  120 (582)
                      |..+.+.|-. |++++|..+++.+.   +..+..|..+..++...|+.+.|.+.|.+.++  +.|+.+...+ +-...-.
T Consensus       119 ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka  196 (966)
T KOG4626|consen  119 YSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKA  196 (966)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHh
Confidence            3345555544 67777776666653   23455677777777777777777777766665  3444433222 2222334


Q ss_pred             cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCChhHHHHHH
Q 007998          121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD---IASWNALIAGLAQGNLASEAVDLF  197 (582)
Q Consensus       121 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~  197 (582)
                      .|++++|...+.++++... .=...|+.|...+-..|++..|..-|++...-|   ..+|-.|...|...+.+++|+..|
T Consensus       197 ~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y  275 (966)
T KOG4626|consen  197 EGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY  275 (966)
T ss_pred             hcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence            5666777776666665532 123456666666777777777777776665433   346666777777777777777777


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCC
Q 007998          198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRK  275 (582)
Q Consensus       198 ~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~  275 (582)
                      .+.....  +.....+..+...|-..|.++.|...+++.++.... -...|+.|..++...|++.+|.+.|.+..  +..
T Consensus       276 ~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~  352 (966)
T KOG4626|consen  276 LRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN  352 (966)
T ss_pred             HHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence            6666553  334556666666667777777777777776665311 25667777777777777777777776543  233


Q ss_pred             CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhh
Q 007998          276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSV  353 (582)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l  353 (582)
                      -..+.+.|...|...|.+++|..+|....+  +.|.- ..++.|...|-++|++++|...|++.+.  ++|+ ...|+.+
T Consensus       353 hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm  428 (966)
T KOG4626|consen  353 HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM  428 (966)
T ss_pred             cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence            455667777777777777777777776665  45553 4566677777777777777777777665  4555 3566667


Q ss_pred             hhHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchH
Q 007998          354 VDLLGRAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD  431 (582)
Q Consensus       354 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  431 (582)
                      ...|-..|+...|.+.+.+. .++|. ....+.|...|...|+..+|+..+++.++++|+-+.+|-.++.++--..+|.+
T Consensus       429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  429 GNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             chHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence            77777777777777776654 55553 45666777777777777777777777777777777777776666665556555


Q ss_pred             H
Q 007998          432 V  432 (582)
Q Consensus       432 a  432 (582)
                      -
T Consensus       509 ~  509 (966)
T KOG4626|consen  509 Y  509 (966)
T ss_pred             h
Confidence            3

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.87  E-value=1.6e-18  Score=198.30  Aligned_cols=386  Identities=11%  Similarity=0.046  Sum_probs=281.9

Q ss_pred             HhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCh-hHHH------------
Q 007998           50 YALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA-LTCS------------  112 (582)
Q Consensus        50 i~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~------------  112 (582)
                      ...+.. |++++|...|++..   +.+...+..|...+.+.|++++|+..|++..+..+.... ..+.            
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            344445 99999999998764   347788899999999999999999999998875433211 1121            


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCC
Q 007998          113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNL  189 (582)
Q Consensus       113 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~  189 (582)
                      .....+...|++++|++.++.+++.. +.+...+..+..+|...|++++|++.|++...   .+...+..+...|. .++
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~  433 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS  433 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence            12345668899999999999999875 34566778889999999999999999988753   34566777777664 457


Q ss_pred             hhHHHHHHHHHHHcCCC-------CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007998          190 ASEAVDLFKRMKMEGVF-------KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD  262 (582)
Q Consensus       190 ~~~A~~~~~~m~~~g~~-------~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~  262 (582)
                      .++|+.+++.+......       ......+......+...|++++|.+.+++.++.... +...+..+...|.+.|+++
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence            78888887765432100       001123445566777888999999999888887533 5667778888899999999


Q ss_pred             HHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH---------HHHHHHHHHHcCCCHHHH
Q 007998          263 KAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV---------SYLAALCACNHAGLVDDG  331 (582)
Q Consensus       263 ~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a  331 (582)
                      +|...|+++.  .+.+...+..+...+...++.++|+..++++......++..         .+......+...|+.++|
T Consensus       513 ~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA  592 (1157)
T PRK11447        513 QADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA  592 (1157)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence            9999888764  13355566666666777888888888888764432222221         123445667788888888


Q ss_pred             HHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998          332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG  409 (582)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  409 (582)
                      ..+++.     .+.+...+..+...|.+.|++++|++.|++. ...| +...+..+...+...|++++|++.++++.+..
T Consensus       593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~  667 (1157)
T PRK11447        593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA  667 (1157)
T ss_pred             HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence            888762     2344556667888888888888888888876 4445 57788888888888888888888888888888


Q ss_pred             CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          410 SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       410 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      |+++..+..++.++...|++++|.++++++....
T Consensus       668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            8888888888888888888888888888887654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.87  E-value=2.2e-18  Score=197.09  Aligned_cols=410  Identities=10%  Similarity=0.003  Sum_probs=320.9

Q ss_pred             cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCC--CC---hhHHHHH-----------
Q 007998           17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINA--PS---TNDFNAV-----------   79 (582)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~--~~---~~~~~~l-----------   79 (582)
                      ++.+.|...+..+++.... +  +.+   +..|...|.+ |++++|...|++...  |+   ...|..+           
T Consensus       283 g~~~~A~~~l~~aL~~~P~-~--~~a---~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~  356 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPK-D--SEA---LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ  356 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCC-C--HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence            4578888888888875422 2  334   3678888888 999999999987642  32   2233322           


Q ss_pred             -HHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 007998           80 -LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE  158 (582)
Q Consensus        80 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  158 (582)
                       ...+.+.|++++|+..|++..+..+ .+...+..+...+...|++++|++.++.+++.. +.+...+..+...|. .++
T Consensus       357 ~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~  433 (1157)
T PRK11447        357 QGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS  433 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence             3456789999999999999998643 355677788899999999999999999999875 335566777778775 467


Q ss_pred             HHHHHHHHhhcCCCC------------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCc
Q 007998          159 IVSAKKVFDEMGVRD------------IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW  226 (582)
Q Consensus       159 ~~~A~~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~  226 (582)
                      .++|...++.+....            ...+..+...+...|++++|++.|++.++..  +-+...+..+...+.+.|++
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCH
Confidence            899999998875431            2245567788889999999999999999875  55677888899999999999


Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCC----CH---------HHHHHHHHHHHhCCCh
Q 007998          227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK----SL---------VTWNTMVMAFAVHGDG  293 (582)
Q Consensus       227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~  293 (582)
                      ++|...++++++... .+...+..+...+.+.|+.++|...++.+. ..    +.         ..+..+...+...|+.
T Consensus       512 ~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~-~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~  589 (1157)
T PRK11447        512 SQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLP-RAQWNSNIQELAQRLQSDQVLETANRLRDSGKE  589 (1157)
T ss_pred             HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCC-chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence            999999999987643 355555566667888999999999999886 21    11         1123456778899999


Q ss_pred             hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998          294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV  373 (582)
Q Consensus       294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  373 (582)
                      ++|+.+++.     .+++...+..+...+.+.|++++|...|+++.+.. +.+...+..++.+|...|++++|++.++..
T Consensus       590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l  663 (1157)
T PRK11447        590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL  663 (1157)
T ss_pred             HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999882     23445567778889999999999999999999843 345778888999999999999999999987


Q ss_pred             -CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc------hhHHHHHHHHHhcCCchHHHHHHHHHH-hCCC
Q 007998          374 -SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC------GDFVLLSNLYAAYERWDDVGRVRKAMK-NRDV  444 (582)
Q Consensus       374 -~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~~~  444 (582)
                       ...| +...+..+..++...|++++|.++++++++..|+++      ..+..++.++...|++++|...++... ..++
T Consensus       664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~  743 (1157)
T PRK11447        664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI  743 (1157)
T ss_pred             hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence             3444 566778888899999999999999999999876544      356677999999999999999999875 3344


Q ss_pred             c
Q 007998          445 K  445 (582)
Q Consensus       445 ~  445 (582)
                      .
T Consensus       744 ~  744 (1157)
T PRK11447        744 T  744 (1157)
T ss_pred             C
Confidence            3

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.87  E-value=2.1e-18  Score=185.20  Aligned_cols=251  Identities=14%  Similarity=0.026  Sum_probs=206.1

Q ss_pred             CChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007998          188 NLASEAVDLFKRMKMEGVFKP-NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE  266 (582)
Q Consensus       188 g~~~~A~~~~~~m~~~g~~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~  266 (582)
                      +++++|++.|++....+...| +...+..+...+...|++++|...+++.++... .+...|..+...|...|++++|..
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~  386 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEE  386 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHH
Confidence            678999999999987652133 456788888888999999999999999988742 246688889999999999999999


Q ss_pred             HHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC
Q 007998          267 VFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGV  343 (582)
Q Consensus       267 ~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  343 (582)
                      .|++..  .+.+...|..+...+...|++++|+..|++..+.  .|+ ...+..+..++.+.|++++|...|++..+.. 
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-  463 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-  463 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence            999764  2456789999999999999999999999999875  454 5677778888999999999999999998732 


Q ss_pred             ccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998          344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDM-V-------LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG  414 (582)
Q Consensus       344 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  414 (582)
                      +.+...+..+..+|...|++++|.+.|++. ...|+. .       .++..+..+...|++++|...++++++++|++..
T Consensus       464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~  543 (615)
T TIGR00990       464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI  543 (615)
T ss_pred             CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            335678888999999999999999999875 333321 1       1222223344569999999999999999999988


Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          415 DFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       415 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      .+..++.++...|++++|.+.+++..+.
T Consensus       544 a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       544 AVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999988654

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=7.6e-20  Score=178.33  Aligned_cols=363  Identities=12%  Similarity=0.095  Sum_probs=311.1

Q ss_pred             hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-HHHHHHHH
Q 007998           73 TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADA-LLGTTLLD  151 (582)
Q Consensus        73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~  151 (582)
                      ..+|..+...+-..|++++|+.+++.|.+..++ ....|..+..++...|+.+.|.+.+...++..  |+. ...+.+.+
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn  192 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN  192 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence            457888999999999999999999999985322 45689999999999999999999999998874  443 34455667


Q ss_pred             HHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHH
Q 007998          152 VYAKVGEIVSAKKVFDEMGV--R-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE  228 (582)
Q Consensus       152 ~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~  228 (582)
                      .....|++++|...+.+..+  | =.+.|+.|...+-.+|+...|+..|++.....  +.=...|..+...|...+.++.
T Consensus       193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~  270 (966)
T KOG4626|consen  193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDR  270 (966)
T ss_pred             HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchH
Confidence            77788999999998877653  3 24789999999999999999999999998764  2335689999999999999999


Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 007998          229 GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRA  306 (582)
Q Consensus       229 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  306 (582)
                      |...+.+..... +....++..+...|...|.++-|+..|++.. ..| -...|+.|..++-..|+..+|...|.+... 
T Consensus       271 Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-  348 (966)
T KOG4626|consen  271 AVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR-  348 (966)
T ss_pred             HHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-
Confidence            999998887753 2246778888899999999999999999765 344 467999999999999999999999999987 


Q ss_pred             CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-HHHH
Q 007998          307 GVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-MVLW  382 (582)
Q Consensus       307 g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~  382 (582)
                       +.|+. ...+.|...+...|.+++|..+|....+  +.|. ....+.|...|-+.|++++|...+++. .++|+ ...+
T Consensus       349 -l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~  425 (966)
T KOG4626|consen  349 -LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL  425 (966)
T ss_pred             -hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence             45665 5788899999999999999999999887  3344 466788999999999999999999986 88886 5789


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          383 QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       383 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      +.+...|...|+.+.|.+.+.+++..+|.-..++..|+.+|...|+..+|.+-++...+...+
T Consensus       426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD  488 (966)
T KOG4626|consen  426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD  488 (966)
T ss_pred             HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999999999999999999999999999999988765544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=1.7e-19  Score=183.76  Aligned_cols=292  Identities=12%  Similarity=0.050  Sum_probs=176.3

Q ss_pred             HHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHhccCCc
Q 007998          153 YAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN---EVTVLGALAACGHLGAW  226 (582)
Q Consensus       153 y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd---~~t~~~ll~a~~~~~~~  226 (582)
                      +...|++++|...|.++...   +..+|..+...+.+.|++++|+.+++.+...+. .++   ..++..+...+.+.|++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD-LTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHCCCH
Confidence            34445555555555544321   233455555555555555555555555544321 111   12344445555555555


Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC------HHHHHHHHHHHHhCCChhHHHHH
Q 007998          227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS------LVTWNTMVMAFAVHGDGPRALEL  299 (582)
Q Consensus       227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~~~  299 (582)
                      ++|..++.++.+.. +.+..+++.++..|.+.|++++|.+.|+.+. ..|+      ...|..+...+...|++++|+..
T Consensus       124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            55555555555432 2234455555555666666666665555543 0111      11344555666667777777777


Q ss_pred             HHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC
Q 007998          300 FEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT  377 (582)
Q Consensus       300 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p  377 (582)
                      |+++.+.  .|+ ...+..+...+.+.|++++|.++++++.+.+.......+..++.+|.+.|++++|.+.++++ ...|
T Consensus       203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p  280 (389)
T PRK11788        203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP  280 (389)
T ss_pred             HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            7777653  233 34556666677777777777777777776332222355667777788888888888887776 4456


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCc
Q 007998          378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA---YERWDDVGRVRKAMKNRDVKKVPG  449 (582)
Q Consensus       378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~  449 (582)
                      +...+..+...+.+.|++++|..+++++++..|++. .+..+...+..   .|+.+++..++++|.++++.+.|.
T Consensus       281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            666667788888888888888888888888888664 45555555443   458888999999998888888885

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.86  E-value=7.1e-19  Score=179.24  Aligned_cols=293  Identities=14%  Similarity=0.103  Sum_probs=188.3

Q ss_pred             HHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 007998           83 LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA  162 (582)
Q Consensus        83 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A  162 (582)
                      +...|++++|+..|.++.+.++ .+..++..+...+...|++++|..+++.+++.+..++..                  
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------------------  105 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ------------------  105 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH------------------
Confidence            3445555566666666555421 123345555555555555555555555555432111100                  


Q ss_pred             HHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC
Q 007998          163 KKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD  242 (582)
Q Consensus       163 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~  242 (582)
                                ....++.+...|.+.|++++|+.+|.++.+..  +++..++..++..+.+.|++++|.+.++.+.+.+..
T Consensus       106 ----------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~  173 (389)
T PRK11788        106 ----------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD  173 (389)
T ss_pred             ----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC
Confidence                      01234444455555555555555555554432  334445555555555555555555555555443322


Q ss_pred             Cc----hhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007998          243 MN----VVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYL  316 (582)
Q Consensus       243 ~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~  316 (582)
                      +.    ...+..+...|.+.|++++|.+.|+++.  .+.+...+..+...|.+.|++++|+++|+++.+.+..+...++.
T Consensus       174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  253 (389)
T PRK11788        174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP  253 (389)
T ss_pred             cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence            21    1234566777788888888888888764  13345677888888999999999999999988753222235678


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---c
Q 007998          317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQL---Y  392 (582)
Q Consensus       317 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~---~  392 (582)
                      .+..+|...|++++|...++++.+.  .|+...+..++..|.+.|++++|.++++++ ...|+...+..++..+..   .
T Consensus       254 ~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~  331 (389)
T PRK11788        254 KLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE  331 (389)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence            8888999999999999999998874  366666688899999999999999999876 667898899988877664   5


Q ss_pred             CChHHHHHHHHHHHHc
Q 007998          393 GDVEMAEIASRKLVEM  408 (582)
Q Consensus       393 g~~~~a~~~~~~~~~~  408 (582)
                      |+.+++..+++++++.
T Consensus       332 g~~~~a~~~~~~~~~~  347 (389)
T PRK11788        332 GRAKESLLLLRDLVGE  347 (389)
T ss_pred             ccchhHHHHHHHHHHH
Confidence            6888999999888864

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.85  E-value=1.4e-17  Score=178.41  Aligned_cols=350  Identities=9%  Similarity=-0.013  Sum_probs=272.5

Q ss_pred             CCHHHHHHHHhcCCCC------ChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007998           56 NELAYAHALFRQINAP------STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ  129 (582)
Q Consensus        56 g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  129 (582)
                      .+++.---.|...++.      +..-...++..+.+.|++.+|+.+++..+...+.+ ...+..++.+....|+++.|.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~   97 (656)
T PRK15174         19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQ   97 (656)
T ss_pred             hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHH
Confidence            3444444455554421      22233456677888999999999999998875443 3445555566778999999999


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 007998          130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF  206 (582)
Q Consensus       130 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  206 (582)
                      .++.+++.. +.+...+..+...+.+.|++++|...|++...   .+...|..+...+...|++++|...++.+....  
T Consensus        98 ~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--  174 (656)
T PRK15174         98 VVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--  174 (656)
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--
Confidence            999999885 34667788899999999999999999998753   367789999999999999999999999887764  


Q ss_pred             CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHH
Q 007998          207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMV  284 (582)
Q Consensus       207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li  284 (582)
                      +.+...+..+ ..+...|++++|...++.+++....++......+...+.+.|++++|...|++..  .+.+...+..+.
T Consensus       175 P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg  253 (656)
T PRK15174        175 PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG  253 (656)
T ss_pred             CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            3344444333 3477889999999999998877544455555666788999999999999998765  245677888899


Q ss_pred             HHHHhCCChhH----HHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh
Q 007998          285 MAFAVHGDGPR----ALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR  359 (582)
Q Consensus       285 ~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  359 (582)
                      ..|...|++++    |+..|++..+.  .|+ ...+..+...+...|++++|...++++.+.. +.+...+..+..+|.+
T Consensus       254 ~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~  330 (656)
T PRK15174        254 LAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQ  330 (656)
T ss_pred             HHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            99999999986    89999999874  455 4578888899999999999999999999843 2245566778899999


Q ss_pred             cCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998          360 AGRLQEACDIVKSV-SMGTDMVL-WQTLLGACQLYGDVEMAEIASRKLVEMGSNNC  413 (582)
Q Consensus       360 ~g~~~~A~~~~~~~-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  413 (582)
                      .|++++|.+.++++ ...|+... +..+..++...|+.++|...|+++++..|++.
T Consensus       331 ~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        331 VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            99999999999887 44565444 34456778999999999999999999998753

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.84  E-value=5.9e-17  Score=174.12  Aligned_cols=360  Identities=9%  Similarity=-0.037  Sum_probs=278.1

Q ss_pred             HHHHhcCCC-CCHHHHHHHHhcCC--CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 007998           47 IEFYALSPL-NELAYAHALFRQIN--APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA  123 (582)
Q Consensus        47 ~~li~~y~~-g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  123 (582)
                      ..+.+.|.+ |++++|...|++..  .|+...|..+..+|.+.|++++|++.+...++..+. +...+..+..++...|+
T Consensus       131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~  209 (615)
T TIGR00990       131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGK  209 (615)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCC
Confidence            355566667 99999999999864  577888999999999999999999999999885322 45578888899999999


Q ss_pred             hHHHHHHHHHHHHcCCC-----------------------------CchHHHHHH-------------------------
Q 007998          124 LFETLQIHSHVLRHGFL-----------------------------ADALLGTTL-------------------------  149 (582)
Q Consensus       124 ~~~a~~~~~~~~~~g~~-----------------------------~~~~~~~~l-------------------------  149 (582)
                      +++|..-+..+...+..                             ++...+..+                         
T Consensus       210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (615)
T TIGR00990       210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE  289 (615)
T ss_pred             HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence            99998765443322100                             000000000                         


Q ss_pred             -----HHHH------HhcCCHHHHHHHHhhcCC-----C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHH
Q 007998          150 -----LDVY------AKVGEIVSAKKVFDEMGV-----R-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVT  212 (582)
Q Consensus       150 -----i~~y------~~~g~~~~A~~~f~~m~~-----~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t  212 (582)
                           +..+      ...+++++|.+.|+....     + +...|+.+...+...|++++|+..|++.++..  +.+..+
T Consensus       290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~  367 (615)
T TIGR00990       290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQS  367 (615)
T ss_pred             cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHH
Confidence                 1101      112578889999987753     2 45678889999999999999999999998774  445678


Q ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC
Q 007998          213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH  290 (582)
Q Consensus       213 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~  290 (582)
                      |..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..  .+.+...|..+...+.+.
T Consensus       368 ~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~  446 (615)
T TIGR00990       368 YIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE  446 (615)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC
Confidence            8899999999999999999999998875 3367889999999999999999999999765  244677888899999999


Q ss_pred             CChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChh------hHHhhhhHHhhcCCH
Q 007998          291 GDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK------HYGSVVDLLGRAGRL  363 (582)
Q Consensus       291 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~  363 (582)
                      |++++|+..|++..+.  .|+ ...+..+..++...|++++|...|++..+.....+..      .++.....+...|++
T Consensus       447 g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~  524 (615)
T TIGR00990       447 GSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF  524 (615)
T ss_pred             CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence            9999999999999874  454 5678888899999999999999999998732111111      122222334457999


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          364 QEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       364 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      ++|.+++++. ...| +...+..+...+...|++++|...|+++.++.+..
T Consensus       525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~  575 (615)
T TIGR00990       525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE  575 (615)
T ss_pred             HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence            9999999885 5556 45678899999999999999999999999987754

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.83  E-value=6.5e-17  Score=173.32  Aligned_cols=329  Identities=10%  Similarity=-0.052  Sum_probs=269.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHh
Q 007998          110 TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQ  186 (582)
Q Consensus       110 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~  186 (582)
                      ....++..+.+.|+++.|..+++.++...+.+ ......++......|+.++|...|+++..   .+...|..+...+.+
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~  122 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK  122 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            45566778889999999999999999886554 44455556677789999999999999853   356789999999999


Q ss_pred             CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007998          187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE  266 (582)
Q Consensus       187 ~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~  266 (582)
                      .|++++|++.|++..+..  +.+...+..+..++...|+.++|...+..+......+ ...+..+ ..+.+.|++++|..
T Consensus       123 ~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~  198 (656)
T PRK15174        123 SKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHD  198 (656)
T ss_pred             cCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHH
Confidence            999999999999998874  5667788899999999999999999999887765443 3333333 34788999999999


Q ss_pred             HHhccc-C--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH----HHHHHHHHh
Q 007998          267 VFDNIK-C--RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD----GVRLFNSMA  339 (582)
Q Consensus       267 ~~~~~~-~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~----a~~~~~~~~  339 (582)
                      .++.+. .  .++...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++    |...|+++.
T Consensus       199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al  277 (656)
T PRK15174        199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL  277 (656)
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence            999865 1  1234445556778899999999999999998753 2345677778889999999986    899999998


Q ss_pred             HcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998          340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV  417 (582)
Q Consensus       340 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  417 (582)
                      +.. +.+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|++++|...++++.+.+|.++..+.
T Consensus       278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~  356 (656)
T PRK15174        278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR  356 (656)
T ss_pred             hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence            843 235678889999999999999999999987 4455 5667888889999999999999999999999998877777


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          418 LLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       418 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      .++.++...|++++|...+++..+....
T Consensus       357 ~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        357 YAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            7889999999999999999998765443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.83  E-value=5.2e-17  Score=177.76  Aligned_cols=386  Identities=10%  Similarity=0.026  Sum_probs=288.4

Q ss_pred             hcCCC-CCHHHHHHHHhcCCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH
Q 007998           51 ALSPL-NELAYAHALFRQINA---PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE  126 (582)
Q Consensus        51 ~~y~~-g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  126 (582)
                      ..... |+.++|.+++....+   .+...+..+...+...|++++|..+|++.+... +.+...+..+...+...|+.++
T Consensus        23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e  101 (765)
T PRK10049         23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE  101 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence            34444 899999999988653   355568999999999999999999999988753 2245567777788889999999


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 007998          127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKME  203 (582)
Q Consensus       127 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  203 (582)
                      |...++.+++.. +.+.. +..+..++...|+.++|...+++...   .+...+..+...+...|..++|++.++.... 
T Consensus       102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-  178 (765)
T PRK10049        102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-  178 (765)
T ss_pred             HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence            999999999884 44556 88889999999999999999998853   3566777788888899999999998886653 


Q ss_pred             CCCCCCH------HHHHHHHHHHh-----ccCCc---HHHHHHHHHHHHc-CCCCchh-H-H---HHHHHHHHhcCCHHH
Q 007998          204 GVFKPNE------VTVLGALAACG-----HLGAW---KEGDKIHEYIREE-RLDMNVV-V-C---NAVIDMYAKCGLLDK  263 (582)
Q Consensus       204 g~~~pd~------~t~~~ll~a~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~-~---~~li~~y~~~g~~~~  263 (582)
                         .|+.      .....++....     ..+++   ++|.+.++.+++. ...|+.. . .   ...+.++...|++++
T Consensus       179 ---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e  255 (765)
T PRK10049        179 ---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD  255 (765)
T ss_pred             ---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence               2221      11122222221     11223   6778888888754 2223221 1 1   111334457799999


Q ss_pred             HHHHHhcccCC----CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 007998          264 AFEVFDNIKCR----KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP---DDVSYLAALCACNHAGLVDDGVRLFN  336 (582)
Q Consensus       264 A~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~  336 (582)
                      |++.|+++...    |+. .-..+...|...|++++|+..|+++.......   .......+..++...|++++|..+++
T Consensus       256 A~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~  334 (765)
T PRK10049        256 VISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA  334 (765)
T ss_pred             HHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            99999988721    221 11225778999999999999999987642111   12445666778899999999999999


Q ss_pred             HHhHcCC-----------ccC---hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 007998          337 SMANCGV-----------KPN---MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEI  400 (582)
Q Consensus       337 ~~~~~~~-----------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~  400 (582)
                      .+.....           .|+   ...+..+...+...|++++|+++++++ ...| +...+..+...+...|++++|++
T Consensus       335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~  414 (765)
T PRK10049        335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN  414 (765)
T ss_pred             HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            9987321           122   234456778889999999999999987 3344 67889999999999999999999


Q ss_pred             HHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      .++++++++|+++..+..++..+...|++++|..+++.+.+...
T Consensus       415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P  458 (765)
T PRK10049        415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP  458 (765)
T ss_pred             HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999886543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.82  E-value=1.4e-15  Score=166.71  Aligned_cols=215  Identities=10%  Similarity=-0.009  Sum_probs=164.0

Q ss_pred             CCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 007998          224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQ  302 (582)
Q Consensus       224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  302 (582)
                      ++.++|...+.+.....  |+......+...+.+.|++++|...|+++. .+|+...+..+...+.+.|+.++|...|++
T Consensus       490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q  567 (987)
T PRK09782        490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ  567 (987)
T ss_pred             CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            44555555555554442  333333334445567888888888888665 235555677777788888888889988888


Q ss_pred             HHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 007998          303 MGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DM  379 (582)
Q Consensus       303 m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~  379 (582)
                      ..+..  |+. ..+..+.......|++++|...+++..+.  .|+...|..+..++.+.|++++|+..+++. ...| +.
T Consensus       568 AL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~  643 (987)
T PRK09782        568 AEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS  643 (987)
T ss_pred             HHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            87753  443 33334444555679999999999999874  466788888899999999999999999887 5556 56


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ..+..+..++...|++++|+..++++++.+|+++..+..++.++...|++++|...+++..+...
T Consensus       644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            77888888999999999999999999999999999999999999999999999999998876553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.81  E-value=9.3e-16  Score=164.87  Aligned_cols=392  Identities=10%  Similarity=0.013  Sum_probs=284.4

Q ss_pred             HHHHHhcCCCCCHHHHHHHHhcCCC--CCh-hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChh---HHHHHHHHHH
Q 007998           46 IIEFYALSPLNELAYAHALFRQINA--PST-NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL---TCSFALKACA  119 (582)
Q Consensus        46 ~~~li~~y~~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~  119 (582)
                      |...|-.+.+|+++.|+..|++..+  |+. .....++..+...|+.++|+..+++..    .|+..   ....+...+.
T Consensus        38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYR  113 (822)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHH
Confidence            4555555544999999999988763  332 123388888888899999999999987    33222   2333345777


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHH--hCCChhHHHHHH
Q 007998          120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA--QGNLASEAVDLF  197 (582)
Q Consensus       120 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~--~~g~~~~A~~~~  197 (582)
                      ..|++++|.++++.+++..+. ++.++..++..|...++.++|++.++++...+......+..+|.  ..++..+|++.+
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~  192 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS  192 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence            889999999999999988643 56777788889999999999999999987554332222444444  356666699999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHH------------------------------------------
Q 007998          198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY------------------------------------------  235 (582)
Q Consensus       198 ~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~------------------------------------------  235 (582)
                      +++.+..  |.+...+.....+..+.|-...|.++..+                                          
T Consensus       193 ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~a  270 (822)
T PRK14574        193 SEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKA  270 (822)
T ss_pred             HHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence            9998875  55666666777777666655555444331                                          


Q ss_pred             ------HHH-cCCCCc-hhH-HH---HHHHHHHhcCCHHHHHHHHhcccCCC---CHHHHHHHHHHHHhCCChhHHHHHH
Q 007998          236 ------IRE-ERLDMN-VVV-CN---AVIDMYAKCGLLDKAFEVFDNIKCRK---SLVTWNTMVMAFAVHGDGPRALELF  300 (582)
Q Consensus       236 ------~~~-~~~~~~-~~~-~~---~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~  300 (582)
                            +.. .+..|. ... ..   -.+-++.+.|+..++++.|+.++...   ...+-.+...+|...+++++|+.+|
T Consensus       271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~  350 (822)
T PRK14574        271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL  350 (822)
T ss_pred             HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence                  111 011121 111 12   23446678889999999999987222   2235566889999999999999999


Q ss_pred             HHHHhcC-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC-----------ccCh---hhHHhhhhHHhhcC
Q 007998          301 EQMGRAG-----VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV-----------KPNM---KHYGSVVDLLGRAG  361 (582)
Q Consensus       301 ~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~li~~~~~~g  361 (582)
                      +++....     ..++......|.-++...+++++|..+++.+.+...           .|+.   ..+..++..+...|
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g  430 (822)
T PRK14574        351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN  430 (822)
T ss_pred             HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence            9986642     122333457788899999999999999999987211           1221   23445677788999


Q ss_pred             CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998          362 RLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM  439 (582)
Q Consensus       362 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  439 (582)
                      ++.+|++.++++ ..-| |...+..+...+...|++..|++.++.+..++|++..+...++.++...|+|.+|..+.+.+
T Consensus       431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l  510 (822)
T PRK14574        431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV  510 (822)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            999999999987 3344 88899999999999999999999999999999999999999999999999999999988777


Q ss_pred             HhCCC
Q 007998          440 KNRDV  444 (582)
Q Consensus       440 ~~~~~  444 (582)
                      .+...
T Consensus       511 ~~~~P  515 (822)
T PRK14574        511 ISRSP  515 (822)
T ss_pred             HhhCC
Confidence            66544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.81  E-value=1e-15  Score=167.67  Aligned_cols=386  Identities=11%  Similarity=0.025  Sum_probs=290.0

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcC---CCCChhHHHHHHHHHHcCCCchHHH
Q 007998           18 SHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQI---NAPSTNDFNAVLRGLAHSSKPTNAV   93 (582)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~   93 (582)
                      +.+.+.+++.......  +.  +.  ..+..+...+.+ |++++|..+|++.   .+.+...+..++..+...|++++|+
T Consensus        30 ~~~~A~~~~~~~~~~~--~~--~a--~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~  103 (765)
T PRK10049         30 QDAEVITVYNRYRVHM--QL--PA--RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEAL  103 (765)
T ss_pred             CHHHHHHHHHHHHhhC--CC--CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            5777887777776522  22  22  113577788888 9999999999984   3456778889999999999999999


Q ss_pred             HHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 007998           94 LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD  173 (582)
Q Consensus        94 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~  173 (582)
                      ..+++..+..+ .+.. +..+..++...|+.++|...++.+++..+ .+...+..+..++.+.|..+.|.+.++.... +
T Consensus       104 ~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~  179 (765)
T PRK10049        104 VKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANL-T  179 (765)
T ss_pred             HHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-C
Confidence            99999988632 2444 77888888999999999999999999863 3566667788899999999999999998775 2


Q ss_pred             hh--------HHHHHHHHHH-----hCCCh---hHHHHHHHHHHHc-CCCCCCHH-HHH----HHHHHHhccCCcHHHHH
Q 007998          174 IA--------SWNALIAGLA-----QGNLA---SEAVDLFKRMKME-GVFKPNEV-TVL----GALAACGHLGAWKEGDK  231 (582)
Q Consensus       174 ~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~~pd~~-t~~----~ll~a~~~~~~~~~a~~  231 (582)
                      +.        ....++....     ..+++   ++|++.++.+.+. .. .|+.. .+.    ..+.++...|+.++|..
T Consensus       180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~-~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~  258 (765)
T PRK10049        180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD-NPDATADYQRARIDRLGALLARDRYKDVIS  258 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc-CCccchHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            11        1222233222     22334   7789999998864 22 33321 211    11345567799999999


Q ss_pred             HHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998          232 IHEYIREERLD-MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS-----LVTWNTMVMAFAVHGDGPRALELFEQMG  304 (582)
Q Consensus       232 ~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~  304 (582)
                      .|+.+.+.+.+ |+. ....+...|...|++++|+..|+++. ..|.     ...+..+..++...|++++|+.+++++.
T Consensus       259 ~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~  337 (765)
T PRK10049        259 EYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI  337 (765)
T ss_pred             HHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence            99999987632 322 22335779999999999999999875 1222     2456667778899999999999999998


Q ss_pred             hcC-----------CCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHH
Q 007998          305 RAG-----------VKPDD---VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV  370 (582)
Q Consensus       305 ~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  370 (582)
                      ...           -.|+.   ..+..+...+...|++++|+++++++.... +.+...+..+..++...|++++|++.+
T Consensus       338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l  416 (765)
T PRK10049        338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENEL  416 (765)
T ss_pred             hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            742           12342   244566778889999999999999998732 445778889999999999999999999


Q ss_pred             HhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998          371 KSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF  416 (582)
Q Consensus       371 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  416 (582)
                      ++. ...| +...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus       417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            987 5567 467777788888999999999999999999999887543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.75  E-value=3e-14  Score=153.37  Aligned_cols=389  Identities=10%  Similarity=0.032  Sum_probs=287.7

Q ss_pred             cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHH---HHHHHcCCCchHH
Q 007998           17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNAV---LRGLAHSSKPTNA   92 (582)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A   92 (582)
                      ++...|...+.++++......  +.+    ..++..+.. |+.++|+..+++...|+...+..+   ...+...|++++|
T Consensus        48 Gd~~~Al~~L~qaL~~~P~~~--~av----~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A  121 (822)
T PRK14574         48 GDTAPVLDYLQEESKAGPLQS--GQV----DDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA  121 (822)
T ss_pred             CCHHHHHHHHHHHHhhCccch--hhH----HHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            457788888888876554332  334    377777878 999999999999876644444333   4467788999999


Q ss_pred             HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-
Q 007998           93 VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-  171 (582)
Q Consensus        93 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-  171 (582)
                      +++|+++.+..+. +...+..++..+...++.++|++.++.+.+.  .|+...+..++..+...++..+|.+.++++.+ 
T Consensus       122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~  198 (822)
T PRK14574        122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL  198 (822)
T ss_pred             HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence            9999999987543 4566777788889999999999999998877  44555555566666566777668888888742 


Q ss_pred             -C-ChhHHHHHHHHHHhCCChhH------------------------------------------------HHHHHHHHH
Q 007998          172 -R-DIASWNALIAGLAQGNLASE------------------------------------------------AVDLFKRMK  201 (582)
Q Consensus       172 -~-~~~~~~~li~~~~~~g~~~~------------------------------------------------A~~~~~~m~  201 (582)
                       | +...+..+.....+.|-...                                                |+.-++.+.
T Consensus       199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~  278 (822)
T PRK14574        199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL  278 (822)
T ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence             2 33444444444444443333                                                333334433


Q ss_pred             Hc-CCCCCCHH----HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C--
Q 007998          202 ME-GVFKPNEV----TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C--  273 (582)
Q Consensus       202 ~~-g~~~pd~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~--  273 (582)
                      .. +..++...    ...-.+-++...++..++.+.++.+...+.+....+-.++.++|...+++++|+.+|.++. .  
T Consensus       279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~  358 (822)
T PRK14574        279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG  358 (822)
T ss_pred             hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence            31 11022212    2234456778889999999999999998877677788899999999999999999999874 1  


Q ss_pred             -----CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-----------CC--CHH-HHHHHHHHHHcCCCHHHHHHH
Q 007998          274 -----RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV-----------KP--DDV-SYLAALCACNHAGLVDDGVRL  334 (582)
Q Consensus       274 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~~~-t~~~ll~a~~~~g~~~~a~~~  334 (582)
                           .++......|.-+|...+++++|..+++++.+.-.           .|  |-. .+..+...+...|++.+|++.
T Consensus       359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~  438 (822)
T PRK14574        359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK  438 (822)
T ss_pred             cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                 12334457789999999999999999999987311           12  322 344556678899999999999


Q ss_pred             HHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      ++.+.... +-|......+.+.+...|.+.+|++.++.. ...| +..+......++...++++.|..+.+.+.+..|++
T Consensus       439 le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~  517 (822)
T PRK14574        439 LEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED  517 (822)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence            99998743 557888899999999999999999999876 4456 56677788888899999999999999999999988


Q ss_pred             chh
Q 007998          413 CGD  415 (582)
Q Consensus       413 ~~~  415 (582)
                      +.+
T Consensus       518 ~~~  520 (822)
T PRK14574        518 IPS  520 (822)
T ss_pred             hhH
Confidence            743

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.72  E-value=9.9e-14  Score=152.43  Aligned_cols=384  Identities=11%  Similarity=-0.006  Sum_probs=286.1

Q ss_pred             HHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHHHHH--HcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 007998           48 EFYALSPL-NELAYAHALFRQINAPSTNDFNAVLRGL--AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL  124 (582)
Q Consensus        48 ~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  124 (582)
                      .++..+.+ +.++.|.++.+ ..+.+..   ..++..  ...+...++...++.|.+.... +......+--...+.|+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~  392 (987)
T PRK09782        318 ATLPVLLKEGQYDAAQKLLA-TLPANEM---LEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQS  392 (987)
T ss_pred             HHHHHHHhccHHHHHHHHhc-CCCcchH---HHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccH
Confidence            44677777 88887777754 3333332   233322  2346677777778878765221 444444444445678999


Q ss_pred             HHHHHHHHHHHHc-C-CCCchHHHHHHHHHHHhcCC---HHHHHHH-------------------------HhhcC---C
Q 007998          125 FETLQIHSHVLRH-G-FLADALLGTTLLDVYAKVGE---IVSAKKV-------------------------FDEMG---V  171 (582)
Q Consensus       125 ~~a~~~~~~~~~~-g-~~~~~~~~~~li~~y~~~g~---~~~A~~~-------------------------f~~m~---~  171 (582)
                      ++|.+++...... + -..+....+-|++.|.+.+.   ..++..+                         +....   .
T Consensus       393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p  472 (987)
T PRK09782        393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS  472 (987)
T ss_pred             HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence            9999999988762 1 12245566688899988876   3333222                         11111   1


Q ss_pred             C--ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHH
Q 007998          172 R--DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN  249 (582)
Q Consensus       172 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  249 (582)
                      +  +...|..+..++.. ++.++|+..|.+....   .|+......+..++...|++++|...++++...  +|+...+.
T Consensus       473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~  546 (987)
T PRK09782        473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLL  546 (987)
T ss_pred             CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHH
Confidence            2  56778888888876 8999999988888776   566655555566667899999999999998665  34445566


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccc-CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 007998          250 AVIDMYAKCGLLDKAFEVFDNIK-CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL  327 (582)
Q Consensus       250 ~li~~y~~~g~~~~A~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  327 (582)
                      .+...+.+.|++++|.+.|++.. ..| +...+..+.......|++++|+..|++..+.  .|+...+..+..++.+.|+
T Consensus       547 ~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~  624 (987)
T PRK09782        547 AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHN  624 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCC
Confidence            77888999999999999998775 122 3333333344445669999999999999874  6788889999999999999


Q ss_pred             HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998          328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKL  405 (582)
Q Consensus       328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~  405 (582)
                      +++|...+++..... +.+...+..+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++
T Consensus       625 ~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A  703 (987)
T PRK09782        625 VPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV  703 (987)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999843 335677888888999999999999999976 4455 6788999999999999999999999999


Q ss_pred             HHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          406 VEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       406 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      +++.|++..+....++...+..+++.|.+.+++--..++.
T Consensus       704 l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        704 IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD  743 (987)
T ss_pred             HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            9999999999999999999999999999988877665554

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=4.1e-13  Score=126.48  Aligned_cols=399  Identities=13%  Similarity=0.099  Sum_probs=210.9

Q ss_pred             HHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC---------------------------CCH
Q 007998            6 ALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL---------------------------NEL   58 (582)
Q Consensus         6 ~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~---------------------------g~~   58 (582)
                      ++++--+.   +.+..+--++..|...|...+  +-+.-.+-.|+..|..                           |.+
T Consensus       121 nL~kmIS~---~EvKDs~ilY~~m~~e~~~vS--~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v  195 (625)
T KOG4422|consen  121 NLLKMISS---REVKDSCILYERMRSENVDVS--EKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV  195 (625)
T ss_pred             HHHHHHhh---cccchhHHHHHHHHhcCCCCC--HHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence            44444443   236677778888887777766  5554323344444432                           222


Q ss_pred             HHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998           59 AYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG  138 (582)
Q Consensus        59 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g  138 (582)
                        |.-+|+.. +++..+|..||+++++--..+.|.+++++-.....+.+..+||.+|.+..-    ..++++..+|....
T Consensus       196 --AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqk  268 (625)
T KOG4422|consen  196 --ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQK  268 (625)
T ss_pred             --HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhh
Confidence              22333333 345567778888888777778888888877777677777788887766543    23367777777777


Q ss_pred             CCCchHHHHHHHHHHHhcCCHHHHHHHHh----hc----CCCChhHHHHHHHHHHhCCChhH-HHHHHHHHHHc--C---
Q 007998          139 FLADALLGTTLLDVYAKVGEIVSAKKVFD----EM----GVRDIASWNALIAGLAQGNLASE-AVDLFKRMKME--G---  204 (582)
Q Consensus       139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~----~m----~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g---  204 (582)
                      ..||..++|+++++.++.|+++.|++.+-    +|    .+|...+|..+|..+.+.++..+ |..++.++...  |   
T Consensus       269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f  348 (625)
T KOG4422|consen  269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF  348 (625)
T ss_pred             cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence            78888888888888888887776655432    22    13455555555555555555433 23333333221  0   


Q ss_pred             --CCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHH
Q 007998          205 --VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER----LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV  278 (582)
Q Consensus       205 --~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~  278 (582)
                        ..+.|...|.+.+..|.+..+.+.|.+++.-+....    +.|+.                             ....
T Consensus       349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~-----------------------------~~~f  399 (625)
T KOG4422|consen  349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ-----------------------------HRNF  399 (625)
T ss_pred             cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH-----------------------------HHHH
Confidence              101233445555555555555555555554433110    11110                             0011


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHh
Q 007998          279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG  358 (582)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  358 (582)
                      -|..+....++....+..+..|+.|.-.-+-|+..+...+++|..-.+.++-..+++..++.+|-..+.....-+...++
T Consensus       400 Yyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~  479 (625)
T KOG4422|consen  400 YYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA  479 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            23334444444445555555555555444445555555555555555555555555555555442222222222222222


Q ss_pred             hcC---------CHHH-----HHHHH-------HhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCc
Q 007998          359 RAG---------RLQE-----ACDIV-------KSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG---SNNC  413 (582)
Q Consensus       359 ~~g---------~~~~-----A~~~~-------~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~  413 (582)
                      +..         ++..     |..++       .++ ..+-.....+..+..+.+.|..++|.+++..+.+.+   |..|
T Consensus       480 ~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p  559 (625)
T KOG4422|consen  480 RDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP  559 (625)
T ss_pred             cCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence            222         0000     11111       112 112244556666666778888888888888876543   3332


Q ss_pred             h--hHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          414 G--DFVLLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       414 ~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      .  +..-+.+.-........|..+++.|...+..
T Consensus       560 ~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~  593 (625)
T KOG4422|consen  560 LLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP  593 (625)
T ss_pred             chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence            2  2223444444556677788888877665543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.63  E-value=1.5e-12  Score=133.72  Aligned_cols=333  Identities=15%  Similarity=0.147  Sum_probs=257.7

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCChhHHH
Q 007998          118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---GVRDIASWNALIAGLAQGNLASEAV  194 (582)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~  194 (582)
                      ....|++++|..++.++++.. +.....|-.|...|-..|+.+++...+-..   ...|...|-.+.....+.|++.+|.
T Consensus       149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence            334499999999999999986 446778999999999999999998876543   4557788999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHH----HHHHHHhcCCHHHHHHHHhc
Q 007998          195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA----VIDMYAKCGLLDKAFEVFDN  270 (582)
Q Consensus       195 ~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~y~~~g~~~~A~~~~~~  270 (582)
                      -.|.+.++..  +++...+---...|-+.|+...|...|.++.....+.|..-...    .+..|...++-+.|.+.++.
T Consensus       228 ~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  228 YCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999886  67777777778889999999999999999988765444433333    35556677777888888876


Q ss_pred             cc----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH--------------------------HHHHH
Q 007998          271 IK----CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY--------------------------LAALC  320 (582)
Q Consensus       271 ~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--------------------------~~ll~  320 (582)
                      ..    ..-+...++.++..|....+++.|......+......||..-+                          ..+.-
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i  385 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI  385 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence            64    1234456788888899999999999888887762222222111                          12223


Q ss_pred             HHHcCCCHHHHHHHHHHHhHcCCc--cChhhHHhhhhHHhhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCh
Q 007998          321 ACNHAGLVDDGVRLFNSMANCGVK--PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG---TDMVLWQTLLGACQLYGDV  395 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~ll~~~~~~g~~  395 (582)
                      +..+....+....+...+....+.  -+...|.-+.++|...|++.+|+++|..+...   .+..+|.-+...|...|.+
T Consensus       386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~  465 (895)
T KOG2076|consen  386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY  465 (895)
T ss_pred             hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence            344555556566666666665533  35678889999999999999999999988222   2677999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEE
Q 007998          396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI  453 (582)
Q Consensus       396 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~  453 (582)
                      +.|.+.+++++.+.|++..+-..|+..|...|+.++|.+++..|..-+....+++.|.
T Consensus       466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~  523 (895)
T KOG2076|consen  466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE  523 (895)
T ss_pred             HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence            9999999999999999999999999999999999999999998774443334555553

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=3.3e-13  Score=127.80  Aligned_cols=398  Identities=10%  Similarity=0.082  Sum_probs=266.6

Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhc----CCCCCh----hHHHHHHHHHHcCCCchH
Q 007998           21 HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQ----INAPST----NDFNAVLRGLAHSSKPTN   91 (582)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~----~~~~~~----~~~~~li~~~~~~g~~~~   91 (582)
                      .+.-.+.-+++..+.++  .-...  -.+-+.|.+ ..+..|.+.+..    .|.-+-    ...|.+.-.+.+.|.+++
T Consensus       219 ealntyeiivknkmf~n--ag~lk--mnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d  294 (840)
T KOG2003|consen  219 EALNTYEIIVKNKMFPN--AGILK--MNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD  294 (840)
T ss_pred             HHhhhhhhhhcccccCC--Cceee--eeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence            34455666777777666  43332  345667777 888888886643    332221    234555567888999999


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------------CchHHHHHHHH-----HHH
Q 007998           92 AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFL------------ADALLGTTLLD-----VYA  154 (582)
Q Consensus        92 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~------------~~~~~~~~li~-----~y~  154 (582)
                      |+..|+...+.  .|+-.+-..|+-++...|+.+..++.|..++.....            |+....|.-|.     -.-
T Consensus       295 ainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e  372 (840)
T KOG2003|consen  295 AINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME  372 (840)
T ss_pred             hHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence            99999998774  567665555555555678899999999888764322            22233222221     111


Q ss_pred             hcC--CHHHHH----HHHhhcCCCChh---HH----------H--------HHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 007998          155 KVG--EIVSAK----KVFDEMGVRDIA---SW----------N--------ALIAGLAQGNLASEAVDLFKRMKMEGVFK  207 (582)
Q Consensus       155 ~~g--~~~~A~----~~f~~m~~~~~~---~~----------~--------~li~~~~~~g~~~~A~~~~~~m~~~g~~~  207 (582)
                      +.+  +-+++.    ++..-...||-.   -|          .        .-...|.++|+++.|+++++-+.+... +
T Consensus       373 k~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn-k  451 (840)
T KOG2003|consen  373 KENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN-K  451 (840)
T ss_pred             HhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc-h
Confidence            111  111111    111111122110   00          0        012346788888888888777654332 1


Q ss_pred             C------------------------------------CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998          208 P------------------------------------NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV  251 (582)
Q Consensus       208 p------------------------------------d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  251 (582)
                      .                                    |+...+.-.+.....|++++|...+.+.+...-.-....|| +
T Consensus       452 ~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-i  530 (840)
T KOG2003|consen  452 TASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-I  530 (840)
T ss_pred             hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-h
Confidence            1                                    11111111122223478888888888887664333333343 3


Q ss_pred             HHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHH
Q 007998          252 IDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVD  329 (582)
Q Consensus       252 i~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  329 (582)
                      .-.+-+.|++++|++.|-++.  ...++...-.+...|-...+..+|++++.+.... ++.|...++.|...|-+.|+-.
T Consensus       531 glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdks  609 (840)
T KOG2003|consen  531 GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKS  609 (840)
T ss_pred             cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchh
Confidence            445778899999999998765  2556777777888899999999999999876653 3445567888889999999999


Q ss_pred             HHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHH
Q 007998          330 DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGAC-QLYGDVEMAEIASRKLVE  407 (582)
Q Consensus       330 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~  407 (582)
                      +|.+.+-.--. -++.+.++..-|..-|....-+++|..+|++. -+.|+..-|..++..| ++.|++++|..+++.+.+
T Consensus       610 qafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  610 QAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR  688 (840)
T ss_pred             hhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            99988765444 24567888888888899999999999999987 5689999999999776 678999999999999999


Q ss_pred             cCCCCchhHHHHHHHHHhcCC
Q 007998          408 MGSNNCGDFVLLSNLYAAYER  428 (582)
Q Consensus       408 ~~p~~~~~~~~l~~~~~~~g~  428 (582)
                      .-|.+......|..++...|.
T Consensus       689 kfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  689 KFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             hCccchHHHHHHHHHhccccc
Confidence            999999999999999888885

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.63  E-value=1.7e-12  Score=134.16  Aligned_cols=414  Identities=13%  Similarity=0.061  Sum_probs=255.4

Q ss_pred             hhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCC------hhHHHHHHHHHHcCCCchH
Q 007998           19 HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPS------TNDFNAVLRGLAHSSKPTN   91 (582)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~   91 (582)
                      ...|.++........ ..+  |.+.   |.|.+.|-- |+++.+..+...+...+      ..+|-.+.++|-..|++++
T Consensus       252 ~~~~~~ll~~ay~~n-~~n--P~~l---~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ek  325 (1018)
T KOG2002|consen  252 YKKGVQLLQRAYKEN-NEN--PVAL---NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEK  325 (1018)
T ss_pred             HHHHHHHHHHHHhhc-CCC--cHHH---HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHH
Confidence            455666666555432 223  6665   788887777 88888877776654322      2357778888888888888


Q ss_pred             HHHHHHHHHhCCCCCChh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC----CHHHHHHH
Q 007998           92 AVLWYRQMLRGSHRSDAL--TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG----EIVSAKKV  165 (582)
Q Consensus        92 A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~~A~~~  165 (582)
                      |...|-+..+.  .||.+  .+..+.+.+...|+++.+...|+.+.+.. +.+..+...|...|+..+    ..+.|..+
T Consensus       326 A~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~  402 (1018)
T KOG2002|consen  326 AFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNV  402 (1018)
T ss_pred             HHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence            88888777664  34443  44566778888888888888888888774 445666777777777664    44556655


Q ss_pred             HhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHH----HHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 007998          166 FDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRM----KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE  238 (582)
Q Consensus       166 f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~  238 (582)
                      +.+...+   |...|-.+...+-+..- ..++..|...    ...+- ++.+...+.+.......|+++.|...|.....
T Consensus       403 l~K~~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~  480 (1018)
T KOG2002|consen  403 LGKVLEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGK-QIPPEVLNNVASLHFRLGNIEKALEHFKSALG  480 (1018)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence            5554432   45556555555444333 3335555433    23344 45566666666666677777777766666554


Q ss_pred             c---CCCCch------hHHHHHHHHHHhcCCHHHHHHHHhccc------------------------------------C
Q 007998          239 E---RLDMNV------VVCNAVIDMYAKCGLLDKAFEVFDNIK------------------------------------C  273 (582)
Q Consensus       239 ~---~~~~~~------~~~~~li~~y~~~g~~~~A~~~~~~~~------------------------------------~  273 (582)
                      .   ...++.      .+-..+...+-..++.+.|.+.|..+.                                    .
T Consensus       481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d  560 (1018)
T KOG2002|consen  481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID  560 (1018)
T ss_pred             hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence            3   111111      122223333344444444444444332                                    1


Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHc------------CCCHHHHHHHHHHHhH
Q 007998          274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDDVSYLAALCACNH------------AGLVDDGVRLFNSMAN  340 (582)
Q Consensus       274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~~~~  340 (582)
                      ..++..|.-+...|....++..|.+-|...... ...+|..+...|.+.|..            .+..+.|.++|.++++
T Consensus       561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~  640 (1018)
T KOG2002|consen  561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR  640 (1018)
T ss_pred             cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence            233444555555555555555555555444432 123566666666665432            2345677777777776


Q ss_pred             cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-C-CCchhH
Q 007998          341 CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS--MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG-S-NNCGDF  416 (582)
Q Consensus       341 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p-~~~~~~  416 (582)
                      .. +.|...-+-+.-.++..|++.+|.++|.+..  ...+..+|-.+...|...|++-.|.++|+..++.. + +++...
T Consensus       641 ~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl  719 (1018)
T KOG2002|consen  641 ND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL  719 (1018)
T ss_pred             cC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence            32 4466666777777888888888888887762  12245678888888888888888888888877643 2 456677


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          417 VLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       417 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ..|+.++.+.|++.+|.+.........+
T Consensus       720 ~~Lara~y~~~~~~eak~~ll~a~~~~p  747 (1018)
T KOG2002|consen  720 HYLARAWYEAGKLQEAKEALLKARHLAP  747 (1018)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            7888888888888888887776665443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.61  E-value=2.2e-15  Score=145.61  Aligned_cols=257  Identities=17%  Similarity=0.126  Sum_probs=109.5

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 007998          180 LIAGLAQGNLASEAVDLFKRMKMEGVFKP-NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC  258 (582)
Q Consensus       180 li~~~~~~g~~~~A~~~~~~m~~~g~~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~  258 (582)
                      +...+.+.|++++|++++++...... +| |...|..+...+...++.+.|.+.++++...+.. +...+..++.. ...
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~-~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIA-PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            35566677777777777755443331 23 3333444455556677788888888877766533 55666667766 678


Q ss_pred             CCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 007998          259 GLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFN  336 (582)
Q Consensus       259 g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~  336 (582)
                      +++++|.+++...- ..++...+..++..+.+.++++++..+++++.... ..++...|..+...+.+.|+.++|.+.++
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888888877653 24566777888888889999999999998877532 34566677778888889999999999999


Q ss_pred             HHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998          337 SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG  414 (582)
Q Consensus       337 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  414 (582)
                      +..+.. +-+......++..+...|+.+++.++++..  ....|+..|..+..++...|+.++|...+++..+.+|+|+.
T Consensus       171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~  249 (280)
T PF13429_consen  171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL  249 (280)
T ss_dssp             HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred             HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence            998843 224677788899999999999887777655  11345668889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          415 DFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       415 ~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      ....++.++...|+.++|.+++.+..
T Consensus       250 ~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  250 WLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHT----------------
T ss_pred             cccccccccccccccccccccccccc
Confidence            99999999999999999999987654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.60  E-value=2.1e-11  Score=126.31  Aligned_cols=367  Identities=12%  Similarity=0.048  Sum_probs=250.0

Q ss_pred             CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHH
Q 007998           71 PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHR--SDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTT  148 (582)
Q Consensus        71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  148 (582)
                      .|++..+.|..-|.-.|++..+..+...+......  .-...|-.+.+++-..|+++.|.+.|....+.....-+..+-.
T Consensus       268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G  347 (1018)
T KOG2002|consen  268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG  347 (1018)
T ss_pred             CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence            46666777777777778888888888777654211  1123567778888888888888888877766542222334456


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCC----ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 007998          149 LLDVYAKVGEIVSAKKVFDEMGV--R-DIASWNALIAGLAQGN----LASEAVDLFKRMKMEGVFKPNEVTVLGALAACG  221 (582)
Q Consensus       149 li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~  221 (582)
                      |..+|.+.|+++.+...|+.+..  | +..+...+...|+..+    ..+.|..++.+..+.-  +.|...|..+...+-
T Consensus       348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e  425 (1018)
T KOG2002|consen  348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLE  425 (1018)
T ss_pred             hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHH
Confidence            77888888888888888887743  2 4566666777777665    4566666666665553  556677777766665


Q ss_pred             ccCCcHHHHHHHHHH----HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc------CCCCH------HHHHHHHH
Q 007998          222 HLGAWKEGDKIHEYI----REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK------CRKSL------VTWNTMVM  285 (582)
Q Consensus       222 ~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~------~~~~~li~  285 (582)
                      ... ......++..+    ...+-.+.+.+.|.+...+...|+++.|...|+...      ..+|.      .+--.+..
T Consensus       426 ~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar  504 (1018)
T KOG2002|consen  426 QTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR  504 (1018)
T ss_pred             hcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence            433 33335555443    345556778888999999999999999999887653      12222      22333555


Q ss_pred             HHHhCCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCH
Q 007998          286 AFAVHGDGPRALELFEQMGRAGVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRL  363 (582)
Q Consensus       286 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~  363 (582)
                      .+-..++.+.|.+.|....+.  .|+-+ .|..++......+...+|...++.... ..  .++..++.+...+.+...+
T Consensus       505 l~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--~np~arsl~G~~~l~k~~~  580 (1018)
T KOG2002|consen  505 LLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS--SNPNARSLLGNLHLKKSEW  580 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc--CCcHHHHHHHHHHHhhhhh
Confidence            666677888888998888875  56654 455554333345678888888888887 33  3344444566677777777


Q ss_pred             HHHHHHHH----hCCCCCCHHHHHHHHHHHH------------hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 007998          364 QEACDIVK----SVSMGTDMVLWQTLLGACQ------------LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE  427 (582)
Q Consensus       364 ~~A~~~~~----~~~~~p~~~~~~~ll~~~~------------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  427 (582)
                      ..|.+-|+    +....+|..+.-+|.+.|.            ..+..++|++.|.++++.+|.|..+-+.++.+++..|
T Consensus       581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg  660 (1018)
T KOG2002|consen  581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG  660 (1018)
T ss_pred             cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence            77777443    3333467777777776553            2345788888899999999988888888888899999


Q ss_pred             CchHHHHHHHHHHhCCC
Q 007998          428 RWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       428 ~~~~a~~~~~~m~~~~~  444 (582)
                      ++.+|..+|...++...
T Consensus       661 ~~~~A~dIFsqVrEa~~  677 (1018)
T KOG2002|consen  661 RFSEARDIFSQVREATS  677 (1018)
T ss_pred             CchHHHHHHHHHHHHHh
Confidence            99999999988887544

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=1.8e-10  Score=110.31  Aligned_cols=392  Identities=11%  Similarity=0.077  Sum_probs=297.7

Q ss_pred             CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 007998           56 NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS  132 (582)
Q Consensus        56 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  132 (582)
                      +++..|+.+|++..   .++...|-..+..=.++.....|..++++....=+..|..-|.- +-.=-..|++..|+++|+
T Consensus        87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY-~ymEE~LgNi~gaRqife  165 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY-IYMEEMLGNIAGARQIFE  165 (677)
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH-HHHHHHhcccHHHHHHHH
Confidence            67788999999865   46788899999999999999999999999987544445444432 223345699999999999


Q ss_pred             HHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc--CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCC
Q 007998          133 HVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM--GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGV-FKPN  209 (582)
Q Consensus       133 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~pd  209 (582)
                      .-.+.  .|+...|++.|+.=.+...++.|+.++++.  ..|++.+|--....=.++|+...|..+|....+.-- -..+
T Consensus       166 rW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~  243 (677)
T KOG1915|consen  166 RWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA  243 (677)
T ss_pred             HHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence            88765  789999999999999999999999999986  478999999988888999999999999988765411 0112


Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHH---hcc-----c--CCCCHH
Q 007998          210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-NVVVCNAVIDMYAKCGLLDKAFEVF---DNI-----K--CRKSLV  278 (582)
Q Consensus       210 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~---~~~-----~--~~~~~~  278 (582)
                      ...|++...-=.+...++.|.-++...++.=... ....|..+...--+-|+........   .++     .  .+-|-.
T Consensus       244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD  323 (677)
T KOG1915|consen  244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD  323 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence            2334444444446678899999999888763221 1556666666666677755444433   122     1  234667


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHH---HcCCCHHHHHHHHHHHhHcCCccChh
Q 007998          279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-------VSYLAALCAC---NHAGLVDDGVRLFNSMANCGVKPNMK  348 (582)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~g~~~~a~~~~~~~~~~~~~~~~~  348 (582)
                      +|--.+..-...|+.+...++|++.+.. ++|-.       ..|.-+=-+|   ....+++.+.++|+..++ =++....
T Consensus       324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkF  401 (677)
T KOG1915|consen  324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKF  401 (677)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccc
Confidence            8888888888889999999999999875 66633       1222222222   357899999999999987 2333445


Q ss_pred             hHHhhhhHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          349 HYGSVVDLL----GRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY  423 (582)
Q Consensus       349 ~~~~li~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  423 (582)
                      ++.-+--+|    .|+.++..|.+++... +.-|-..++...|..-.+.++++....++++.++-+|.+..++...+..-
T Consensus       402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE  481 (677)
T KOG1915|consen  402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE  481 (677)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence            555444444    4788999999999865 88899999999999999999999999999999999999999999999999


Q ss_pred             HhcCCchHHHHHHHHHHhCCCccCCcccE
Q 007998          424 AAYERWDDVGRVRKAMKNRDVKKVPGFSY  452 (582)
Q Consensus       424 ~~~g~~~~a~~~~~~m~~~~~~~~~~~s~  452 (582)
                      ...|+++.|+.+|+...+......|..-|
T Consensus       482 ~~LgdtdRaRaifelAi~qp~ldmpellw  510 (677)
T KOG1915|consen  482 TSLGDTDRARAIFELAISQPALDMPELLW  510 (677)
T ss_pred             HHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence            99999999999999988776555555444

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=4e-11  Score=113.27  Aligned_cols=353  Identities=14%  Similarity=0.146  Sum_probs=215.1

Q ss_pred             hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHH--hcCChHHH-HHHHHHHHHcCCCCchHHHHHH
Q 007998           73 TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA--RVLALFET-LQIHSHVLRHGFLADALLGTTL  149 (582)
Q Consensus        73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~l  149 (582)
                      +++=|.|+.. ...|...++.-+|+.|...|+..+...-..|++..+  ...++.-+ .+-|-.|.+.| +.+..+|   
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---  190 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---  190 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence            3445566554 346788888999999998888777766666665432  22222222 12233333333 2222222   


Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHH
Q 007998          150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG  229 (582)
Q Consensus       150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a  229 (582)
                           |.|++.+   ++-+...+...++..||.|.++-...+.|.+++++-..... +.+..+|+.+|.+.+-    ..+
T Consensus       191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~-kv~~~aFN~lI~~~S~----~~~  257 (625)
T KOG4422|consen  191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKG-KVYREAFNGLIGASSY----SVG  257 (625)
T ss_pred             -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-eeeHHhhhhhhhHHHh----hcc
Confidence                 2344333   44444455566777888888877777788888877777666 7777777777766432    233


Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH----hccc---CCCCHHHHHHHHHHHHhCCChhH-HHHHHH
Q 007998          230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF----DNIK---CRKSLVTWNTMVMAFAVHGDGPR-ALELFE  301 (582)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~----~~~~---~~~~~~~~~~li~~~~~~g~~~~-A~~~~~  301 (582)
                      +++..+|....+.||..++|+++.+.++.|+++.|.+.+    .+|+   ++|...+|..+|..+.+.++..+ |..+..
T Consensus       258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~  337 (625)
T KOG4422|consen  258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN  337 (625)
T ss_pred             HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence            677777777777888888888888888888776665443    3333   57777778777777777766633 444444


Q ss_pred             HHHh----cCCC---C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cC---CccC---hhhHHhhhhHHhhcCCHHHH
Q 007998          302 QMGR----AGVK---P-DDVSYLAALCACNHAGLVDDGVRLFNSMAN-CG---VKPN---MKHYGSVVDLLGRAGRLQEA  366 (582)
Q Consensus       302 ~m~~----~g~~---p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~---~~~~---~~~~~~li~~~~~~g~~~~A  366 (582)
                      ++..    +.++   | |...|...+..|.+..+.+.|.++...+.. .+   +.|+   ..-|..+.++.+....++.-
T Consensus       338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~  417 (625)
T KOG4422|consen  338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT  417 (625)
T ss_pred             HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433    2222   3 234567777777777777777777766654 22   2232   12355566666777777777


Q ss_pred             HHHHHhC-C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---------------------CCCC----------
Q 007998          367 CDIVKSV-S--MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEM---------------------GSNN----------  412 (582)
Q Consensus       367 ~~~~~~~-~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------~p~~----------  412 (582)
                      +..|+.| |  .-|+..+...++++....+.++..-+++..+...                     +|..          
T Consensus       418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~  497 (625)
T KOG4422|consen  418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF  497 (625)
T ss_pred             HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence            7777776 2  2355555555666655555555444444333221                     1211          


Q ss_pred             ------------------------chhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          413 ------------------------CGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       413 ------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                                              +......+-.+.+.|+.++|.+++..+.+++
T Consensus       498 ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~  552 (625)
T KOG4422|consen  498 AKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH  552 (625)
T ss_pred             HHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence                                    2334456667789999999999999886443

>TIGR00540 hemY_coli hemY protein

Probab=99.53  E-value=4.4e-11  Score=121.79  Aligned_cols=282  Identities=16%  Similarity=0.046  Sum_probs=146.7

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC--hhHHHHHHHHHHhCCChhHHH
Q 007998          120 RVLALFETLQIHSHVLRHGFLADA-LLGTTLLDVYAKVGEIVSAKKVFDEMGV--RD--IASWNALIAGLAQGNLASEAV  194 (582)
Q Consensus       120 ~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~~~g~~~~A~  194 (582)
                      ..|+++.|++.+....+..  |++ ..+-....++.+.|+.+.|.+.|.+..+  |+  ....-.....+.+.|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            3455555555555544432  221 1222333445555555555555555321  11  112222345555566666666


Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH---H----hcCCHHHHHHH
Q 007998          195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY---A----KCGLLDKAFEV  267 (582)
Q Consensus       195 ~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y---~----~~g~~~~A~~~  267 (582)
                      +.++.+.+..  |-+...+..+..++...|+++++.+.+..+.+.+..+.......-..++   .    .....+...+.
T Consensus       174 ~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~  251 (409)
T TIGR00540       174 HGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW  251 (409)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            6666665553  3444555556666666666666666666666554332221111111111   1    11223333344


Q ss_pred             Hhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHhH-c
Q 007998          268 FDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY---LAALCACNHAGLVDDGVRLFNSMAN-C  341 (582)
Q Consensus       268 ~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~-~  341 (582)
                      ++..+  .+.+...+..+...+...|+.++|.+++++..+.  .||....   ..........++.+.+.+.++...+ .
T Consensus       252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            44443  1247778888888888888888888888888774  4444321   1111122334556666666666555 2


Q ss_pred             CCccChhhHHhhhhHHhhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998          342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKS---VSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVE  407 (582)
Q Consensus       342 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  407 (582)
                      .-.|+.....++...+.+.|++++|.+.|+.   ....||...+..+...+.+.|+.++|.+++++.+.
T Consensus       330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2122213444566666666666666666662   24456666666666666666666666666666544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.52  E-value=1.8e-11  Score=123.94  Aligned_cols=220  Identities=13%  Similarity=0.004  Sum_probs=134.9

Q ss_pred             HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCch-------hHHHHHHHHH
Q 007998          183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV-------VVCNAVIDMY  255 (582)
Q Consensus       183 ~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y  255 (582)
                      .+...|++++|.+.++++.+..  |-++..+..+...+.+.|+++++..++..+.+.+..++.       ..|..++...
T Consensus       162 l~l~~g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~  239 (398)
T PRK10747        162 IQLARNENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA  239 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444332  233334444444444444444444444444443322111       1223333333


Q ss_pred             HhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 007998          256 AKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR  333 (582)
Q Consensus       256 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~  333 (582)
                      .+..+.+...++++.++  .+.++.....+..++...|+.++|.+++++..+.  .||....  ++.+....++.+++.+
T Consensus       240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~  315 (398)
T PRK10747        240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK  315 (398)
T ss_pred             HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence            44445566666666664  2456777778888888888888888888887763  4444221  2333445588888888


Q ss_pred             HHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998          334 LFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG  409 (582)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  409 (582)
                      ..+...+.. +-|...+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+.+++.+.+-
T Consensus       316 ~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        316 VLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            888877632 334556777888888888888888888876 667888888888888888888888888888887653

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=4.5e-11  Score=114.88  Aligned_cols=357  Identities=11%  Similarity=0.054  Sum_probs=243.4

Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 007998           76 FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD-ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA  154 (582)
Q Consensus        76 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  154 (582)
                      +-....-|-++|++++|++.|.+.++  ..|| +..|.....+|...|+++++.+--...++..+. -+..+..-..++-
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE  194 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence            34455667788899999999999887  4677 667788888888889998888877666665321 2234444445566


Q ss_pred             hcCCHHHHH----------------------HHHhh---------cC---CC---ChhHHHHHHHHH-------------
Q 007998          155 KVGEIVSAK----------------------KVFDE---------MG---VR---DIASWNALIAGL-------------  184 (582)
Q Consensus       155 ~~g~~~~A~----------------------~~f~~---------m~---~~---~~~~~~~li~~~-------------  184 (582)
                      ..|++++|.                      ++++.         +.   .|   .....++....+             
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            666665553                      22211         11   11   111111111111             


Q ss_pred             ------------HhCC---ChhHHHHHHHHHHHcCCCCC-----C------HHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 007998          185 ------------AQGN---LASEAVDLFKRMKMEGVFKP-----N------EVTVLGALAACGHLGAWKEGDKIHEYIRE  238 (582)
Q Consensus       185 ------------~~~g---~~~~A~~~~~~m~~~g~~~p-----d------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~  238 (582)
                                  ...+   .+.+|.+.+.+-.......+     |      ..++.....-+.-.|+.-.+..-|+..++
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence                        0011   12222222222111000011     1      11122222223345788888888998888


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHH
Q 007998          239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSY  315 (582)
Q Consensus       239 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~  315 (582)
                      ....+ ...|--+..+|....+.++.++.|+...  .+.|..+|..-...+.-.+++++|..=|++.++  +.|+. ..|
T Consensus       355 l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~  431 (606)
T KOG0547|consen  355 LDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAY  431 (606)
T ss_pred             cCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHH
Confidence            76443 3346667788999999999999998765  255677888878888888999999999999987  45654 678


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC---------HHHHHHH
Q 007998          316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD---------MVLWQTL  385 (582)
Q Consensus       316 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~l  385 (582)
                      ..+-.+..+.+.++++...|++.++ .++...+.|+.....+...+++++|.+.|+.. .++|+         +.+-.++
T Consensus       432 iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~  510 (606)
T KOG0547|consen  432 IQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL  510 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence            8888888899999999999999988 34566789999999999999999999999865 44443         2233333


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       386 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      +..- -.+++..|+.+++++++++|....+|..|+.+-...|+.++|..+|++-.
T Consensus       511 l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  511 LVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             hhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3332 34899999999999999999999999999999999999999999999754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.52  E-value=7.7e-14  Score=134.85  Aligned_cols=256  Identities=16%  Similarity=0.070  Sum_probs=71.0

Q ss_pred             HHHHHcCCCchHHHHHHHHHHhCCCCCChhHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 007998           80 LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS-FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE  158 (582)
Q Consensus        80 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  158 (582)
                      ...+.+.|++++|+++++.-.....+|+...|- .+...+...++.+.|++.++.+...+.. ++..+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            444555555556655554433322123332222 2223333455555566655555554422 34444445544 45555


Q ss_pred             HHHHHHHHhhcC--CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHH
Q 007998          159 IVSAKKVFDEMG--VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI  236 (582)
Q Consensus       159 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~  236 (582)
                      .++|.+++...-  .++...+..++..+.+.++++++.++++......-.+++...|......+.+.|+.++|...+++.
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a  172 (280)
T PF13429_consen   93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA  172 (280)
T ss_dssp             -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            555555554432  223444555555556666666666666655433211334455555555555666666666666666


Q ss_pred             HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH
Q 007998          237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS  314 (582)
Q Consensus       237 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  314 (582)
                      ++..+. |..+.+.++..+...|+.+++.+++....  .+.|...|..+..+|...|+.++|+..|++..... +.|...
T Consensus       173 l~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~  250 (280)
T PF13429_consen  173 LELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW  250 (280)
T ss_dssp             HHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred             HHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence            555322 45555556666666666665555554432  13344555566666666666666666666655531 223445


Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHh
Q 007998          315 YLAALCACNHAGLVDDGVRLFNSMA  339 (582)
Q Consensus       315 ~~~ll~a~~~~g~~~~a~~~~~~~~  339 (582)
                      ...+..++...|+.++|.++..++.
T Consensus       251 ~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  251 LLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccc
Confidence            5555556666666666665555443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.51  E-value=5.9e-11  Score=120.19  Aligned_cols=276  Identities=9%  Similarity=0.054  Sum_probs=207.3

Q ss_pred             cCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHH--HHHHHHhccCCcHHHH
Q 007998          156 VGEIVSAKKVFDEMGVR--D-IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL--GALAACGHLGAWKEGD  230 (582)
Q Consensus       156 ~g~~~~A~~~f~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~--~ll~a~~~~~~~~~a~  230 (582)
                      .|+++.|++.+...++.  + ...|........+.|+++.|.+.|.++.+.   .|+.....  .....+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            68999999888876543  2 233433345558899999999999999875   56654333  3356778899999999


Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCH--------HHHHHHHHHHHhCCChhHHHHHH
Q 007998          231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSL--------VTWNTMVMAFAVHGDGPRALELF  300 (582)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~--------~~~~~li~~~~~~g~~~~A~~~~  300 (582)
                      ..++.+.+... -+..+...+...|.+.|++++|.+++..+.  ...+.        .+|..++.......+.+...+++
T Consensus       174 ~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999988863 367888899999999999999999998876  01111        13444444444555666777777


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-C
Q 007998          301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-D  378 (582)
Q Consensus       301 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~  378 (582)
                      +.+.+. .+.+......+..++...|+.++|.+++++..+.  +|+....  ++......++.+++.+.+++. ...| |
T Consensus       253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~  327 (398)
T PRK10747        253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT  327 (398)
T ss_pred             HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence            776443 3446677788888999999999999999988873  4444322  233334558999999998876 4445 5


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       379 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      +..+..+...|...+++++|.+.|+++++.+|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6678888899999999999999999999999954 6688999999999999999999987643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=1.9e-12  Score=129.14  Aligned_cols=278  Identities=10%  Similarity=0.011  Sum_probs=211.6

Q ss_pred             CHHHHHHHHhhcCC--CChh-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccCCcHHHHHHH
Q 007998          158 EIVSAKKVFDEMGV--RDIA-SWNALIAGLAQGNLASEAVDLFKRMKMEGVF-KPNEVTVLGALAACGHLGAWKEGDKIH  233 (582)
Q Consensus       158 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~pd~~t~~~ll~a~~~~~~~~~a~~~~  233 (582)
                      ...+|...|...+.  +|+. ...-+..+|...+++++|.++|+...+.... --+...|++++--+-+    +-+..++
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence            46778888888653  2433 3445678889999999999999988765311 1245677777654422    1122222


Q ss_pred             H-HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 007998          234 E-YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP  310 (582)
Q Consensus       234 ~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  310 (582)
                      . .+++.. +..+.+|-++.+.|+-+++.+.|++.|++.. ..| ...+|+.+..-+.....+|.|...|+..+.  +.|
T Consensus       410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~  486 (638)
T KOG1126|consen  410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP  486 (638)
T ss_pred             HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence            2 223332 3457899999999999999999999999775 233 677888888889999999999999998875  456


Q ss_pred             CH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 007998          311 DD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLL  386 (582)
Q Consensus       311 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll  386 (582)
                      .. ..|-.+...|.+.++++.|+-.|+++.+  +.| +......+...+-+.|+.|+|++++++. ..+| |+..--.-+
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            55 3677788899999999999999999987  334 5566667788899999999999999987 3333 554444455


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       387 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ..+...+++++|++.++++.+.-|++...|.+++.+|.+.|+.+.|..-|.-+.+.+.
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            6677789999999999999999999999999999999999999999988877766544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.50  E-value=1.2e-10  Score=120.08  Aligned_cols=351  Identities=10%  Similarity=0.003  Sum_probs=235.8

Q ss_pred             CCCCCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007998           53 SPLNELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ  129 (582)
Q Consensus        53 y~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  129 (582)
                      |++|++++|.+++.++.   +.+...|.+|...|-+.|+.+++...+-...-.. +-|...|..+..-..+.|++++|.-
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence            44499999999999875   4577889999999999999999988776554433 2356788888888889999999999


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh----hHH----HHHHHHHHhCCChhHHHHHHHHHH
Q 007998          130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDI----ASW----NALIAGLAQGNLASEAVDLFKRMK  201 (582)
Q Consensus       130 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~----~~~----~~li~~~~~~g~~~~A~~~~~~m~  201 (582)
                      .|.++++.. +++....---+.+|-+.|+...|...|.++-..+.    .-.    -.++..|...++-+.|++.+....
T Consensus       229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~  307 (895)
T KOG2076|consen  229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL  307 (895)
T ss_pred             HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999886 34544444567889999999999988887753322    222    233556677777788888888776


Q ss_pred             HcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc---------------------------CCCCchhH-HHHHHH
Q 007998          202 MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE---------------------------RLDMNVVV-CNAVID  253 (582)
Q Consensus       202 ~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~-~~~li~  253 (582)
                      ..+.-..+...++.++..+.+...++.+..........                           +..++..+ ...+--
T Consensus       308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL  387 (895)
T KOG2076|consen  308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL  387 (895)
T ss_pred             hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence            63211334455666666777777777777666655541                           22233333 222222


Q ss_pred             HHHhcCCHHHHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH
Q 007998          254 MYAKCGLLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD  330 (582)
Q Consensus       254 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  330 (582)
                      ...+.+...+++.-|....   ..-++..|.-+..+|.+.|++.+|+.+|..+......-+...|..+..+|...|.+++
T Consensus       388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~  467 (895)
T KOG2076|consen  388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE  467 (895)
T ss_pred             hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence            2334455555555543322   1234556777888888888888888888888875444456678888888888888888


Q ss_pred             HHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCChHHHH
Q 007998          331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS-----------MGTDMVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~ll~~~~~~g~~~~a~  399 (582)
                      |.+.|+.++... +-+...--.|...|-+.|+.++|.+.+..+-           ..|+..........+.+.|+.++-.
T Consensus       468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi  546 (895)
T KOG2076|consen  468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI  546 (895)
T ss_pred             HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence            888888888721 2234455567777888888888888888762           1122333333445556667766655


Q ss_pred             HHHHHHH
Q 007998          400 IASRKLV  406 (582)
Q Consensus       400 ~~~~~~~  406 (582)
                      .....++
T Consensus       547 ~t~~~Lv  553 (895)
T KOG2076|consen  547 NTASTLV  553 (895)
T ss_pred             HHHHHHH
Confidence            5544443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.49  E-value=2.6e-09  Score=106.32  Aligned_cols=409  Identities=11%  Similarity=0.051  Sum_probs=320.6

Q ss_pred             hhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHH
Q 007998           19 HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVL   94 (582)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~   94 (582)
                      .+.++-+...+++.-.. +         .-|.-+|++ ..++.|.+++....   +.+...|.+-...=-.+|+.+...+
T Consensus       392 ~~darilL~rAveccp~-s---------~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k  461 (913)
T KOG0495|consen  392 PEDARILLERAVECCPQ-S---------MDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK  461 (913)
T ss_pred             hHHHHHHHHHHHHhccc-h---------HHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence            45577777777654311 1         234455566 77888888887653   4577788877777778888888887


Q ss_pred             HHHHH----HhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhcCCHHHHHHHHhh
Q 007998           95 WYRQM----LRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD--ALLGTTLLDVYAKVGEIVSAKKVFDE  168 (582)
Q Consensus        95 ~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~  168 (582)
                      +..+-    ...|+..+...|..=..+|-..|..-.+..+...++..|++..  ..+|+.-.+.|.+.+.++-|+.+|..
T Consensus       462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~  541 (913)
T KOG0495|consen  462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH  541 (913)
T ss_pred             HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence            77654    4578888988898888889888999999999988888887533  35788888899999999999999987


Q ss_pred             cCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCch
Q 007998          169 MGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV  245 (582)
Q Consensus       169 m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~  245 (582)
                      ..+   .+...|......=-..|..++-..+|++....-  +-....|.......-..|+...|+.++..+.+.... +.
T Consensus       542 alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-se  618 (913)
T KOG0495|consen  542 ALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SE  618 (913)
T ss_pred             HHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cH
Confidence            643   366788888877778899999999999998773  445556666666777889999999999999987644 78


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHH
Q 007998          246 VVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACN  323 (582)
Q Consensus       246 ~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~  323 (582)
                      .+|.+-+..-.....++.|+.+|.+.. ..|....|.--+..---.++.++|++++++.++.  -|+- ..|..+...+.
T Consensus       619 eiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e  696 (913)
T KOG0495|consen  619 EIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEE  696 (913)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHH
Confidence            888889999999999999999998765 4678888888777777889999999999988874  5665 47777888888


Q ss_pred             cCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHH
Q 007998          324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM-GT-DMVLWQTLLGACQLYGDVEMAEIA  401 (582)
Q Consensus       324 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~  401 (582)
                      +.++++.|...|..=.+ ..+-.+..|-.|.+.=-+.|.+-+|..++++... +| +...|-..+..-.+.|+.+.|..+
T Consensus       697 ~~~~ie~aR~aY~~G~k-~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l  775 (913)
T KOG0495|consen  697 QMENIEMAREAYLQGTK-KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL  775 (913)
T ss_pred             HHHHHHHHHHHHHhccc-cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence            89999999888876554 2334567788888888889999999999998732 34 788999999999999999999999


Q ss_pred             HHHHHHcCCCC------------------------------chhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          402 SRKLVEMGSNN------------------------------CGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       402 ~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ..++++--|.+                              +.....++..+....+++.|++-|.+..+.+
T Consensus       776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d  847 (913)
T KOG0495|consen  776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD  847 (913)
T ss_pred             HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99888765544                              4455567777777788888888888776654

>TIGR00540 hemY_coli hemY protein

Probab=99.48  E-value=5.6e-11  Score=121.02  Aligned_cols=293  Identities=12%  Similarity=0.012  Sum_probs=212.8

Q ss_pred             HHHHHHHHH--HcCCCchHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 007998           75 DFNAVLRGL--AHSSKPTNAVLWYRQMLRGSHRSDAL-TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD  151 (582)
Q Consensus        75 ~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  151 (582)
                      ....+..+.  ...|+++.|.+.+.+..+.  .|++. .+.....+....|+.+.+.+.+..+.+....+...+.-....
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~  161 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR  161 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence            344455544  3579999999999988775  34443 344455777788999999999999987643333345555688


Q ss_pred             HHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHH-HHHHHH---hccC
Q 007998          152 VYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL-GALAAC---GHLG  224 (582)
Q Consensus       152 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~-~ll~a~---~~~~  224 (582)
                      .+...|+++.|...++.+.+   .+...+..+...|.+.|++++|.+++..+.+.++ . +...+. ....++   ...+
T Consensus       162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~-~-~~~~~~~l~~~a~~~~l~~~  239 (409)
T TIGR00540       162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL-F-DDEEFADLEQKAEIGLLDEA  239 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-C-CHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999998853   3677888999999999999999999999999875 3 333331 111222   2222


Q ss_pred             CcHHHHHHHHHHHHcCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHHH---HHHHHHHHHhCCChhHHH
Q 007998          225 AWKEGDKIHEYIREERL---DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVT---WNTMVMAFAVHGDGPRAL  297 (582)
Q Consensus       225 ~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~---~~~li~~~~~~g~~~~A~  297 (582)
                      ..+.+.+.+..+.+...   +.+...+..+...+...|+.++|.+++++.. ..||...   +..........++.+.++
T Consensus       240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~  319 (409)
T TIGR00540       240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE  319 (409)
T ss_pred             HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence            23333344554444322   1378899999999999999999999999775 2344432   122222334457888899


Q ss_pred             HHHHHHHhcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998          298 ELFEQMGRAGVKPDDV---SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV  373 (582)
Q Consensus       298 ~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  373 (582)
                      +.+++..+.  .|+..   ...++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus       320 ~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       320 KLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999888764  55554   455778889999999999999996555445788888889999999999999999999863

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=4.5e-10  Score=107.52  Aligned_cols=314  Identities=11%  Similarity=0.081  Sum_probs=220.1

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHHhCCChhHHHHH
Q 007998          118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA-SWNALIAGLAQGNLASEAVDL  196 (582)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~  196 (582)
                      .-+.|....|+..+...+..    -+..|.+-+....-.-+.+.+..+....+..+.. .=--+..+|....+.++++.-
T Consensus       174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k  249 (559)
T KOG1155|consen  174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK  249 (559)
T ss_pred             HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555544432    1222333333333333344443333333322111 111233455566677788888


Q ss_pred             HHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC--CchhHHHHHHHHHHhcCCHH-HHHHHHhcccC
Q 007998          197 FKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD--MNVVVCNAVIDMYAKCGLLD-KAFEVFDNIKC  273 (582)
Q Consensus       197 ~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~  273 (582)
                      .......|+ +.+...-+....+.-...++++|..+|+++.+..+-  .|..+|+.++-.-..+.++. -|..+++ +. 
T Consensus       250 ~e~l~~~gf-~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-id-  326 (559)
T KOG1155|consen  250 KERLSSVGF-PNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-ID-  326 (559)
T ss_pred             HHHHHhccC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hc-
Confidence            888888886 555444444555556778899999999998887321  25667766653332222221 2333332 22 


Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHh
Q 007998          274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS  352 (582)
Q Consensus       274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  352 (582)
                      +--+.|...+.+-|+-.++.++|...|++..+.  .|.. ..|+.+..-|...++...|..-++.+++-. +.|-..|-.
T Consensus       327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYG  403 (559)
T KOG1155|consen  327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYG  403 (559)
T ss_pred             cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhh
Confidence            233455666777888899999999999999874  5654 578888889999999999999999999833 457788999


Q ss_pred             hhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCch
Q 007998          353 VVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD  430 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  430 (582)
                      |.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|++.|.++...+..+...|+.|++.|.+.++.+
T Consensus       404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~  483 (559)
T KOG1155|consen  404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN  483 (559)
T ss_pred             hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence            999999999999999999987 6667 89999999999999999999999999999998778899999999999999999


Q ss_pred             HHHHHHHHHHh
Q 007998          431 DVGRVRKAMKN  441 (582)
Q Consensus       431 ~a~~~~~~m~~  441 (582)
                      +|.+.+++-.+
T Consensus       484 eAa~~yek~v~  494 (559)
T KOG1155|consen  484 EAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHH
Confidence            99999987765

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.7e-09  Score=103.73  Aligned_cols=377  Identities=10%  Similarity=0.046  Sum_probs=217.7

Q ss_pred             CCHHHHHHHHhcCC--CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 007998           56 NELAYAHALFRQIN--APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH  133 (582)
Q Consensus        56 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  133 (582)
                      |++.-|+++|++--  +|+..+|++.|..=.+-..++.|..++++..-  +.|+..+|..-.+.=-+.|.+..++++++.
T Consensus       155 gNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vyer  232 (677)
T KOG1915|consen  155 GNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYER  232 (677)
T ss_pred             cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            44444555554422  35555555555555555555555555555543  335555555444444455555555555555


Q ss_pred             HHHc-CC-CCchHHHHHHHHHHHhcCCHHHHHHHHhh----cCCCC-hhHHHHHHHHHHhCCChhHHHH--------HHH
Q 007998          134 VLRH-GF-LADALLGTTLLDVYAKVGEIVSAKKVFDE----MGVRD-IASWNALIAGLAQGNLASEAVD--------LFK  198 (582)
Q Consensus       134 ~~~~-g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~----m~~~~-~~~~~~li~~~~~~g~~~~A~~--------~~~  198 (582)
                      +++. |- .-+...+++....=.++..++.|.-+|.-    ++... ...|......=-+-|+.....+        -|+
T Consensus       233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE  312 (677)
T KOG1915|consen  233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE  312 (677)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence            5442 10 01112233333333344455555544432    22211 2223333322233343322222        123


Q ss_pred             HHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc-hhHHHHHHH--------HHHhcCCHHHHHHHHh
Q 007998          199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN-VVVCNAVID--------MYAKCGLLDKAFEVFD  269 (582)
Q Consensus       199 ~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~--------~y~~~g~~~~A~~~~~  269 (582)
                      .++..+  +-|-.+|-..+..-...|+.+..+++++..+..-.+.. ...|.-.|-        --....+++.+.++|+
T Consensus       313 ~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq  390 (677)
T KOG1915|consen  313 KEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ  390 (677)
T ss_pred             HHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            334443  56667777777777777888888888888876532221 111111111        1123567777888886


Q ss_pred             ccc--CCCCHHHHHHHHHHH----HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC
Q 007998          270 NIK--CRKSLVTWNTMVMAF----AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV  343 (582)
Q Consensus       270 ~~~--~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  343 (582)
                      ...  ++....|+..+--.|    .++.+...|.+++...+  |.-|-..+|...|..-.+.++++.+.+++++.++.+ 
T Consensus       391 ~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-  467 (677)
T KOG1915|consen  391 ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-  467 (677)
T ss_pred             HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence            543  244445544443333    45677888888887766  567888888888888888888888888888888854 


Q ss_pred             ccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998          344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT----DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL  419 (582)
Q Consensus       344 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  419 (582)
                      +-+..+|......=...|+.+.|..+|+-.-..|    ....|.+.|.--...|.++.|..+++++++..+... ++...
T Consensus       468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF  546 (677)
T KOG1915|consen  468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF  546 (677)
T ss_pred             hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence            3466777777777777888888888887652233    356777777777888888899999998888877543 66655


Q ss_pred             HHHHH-----hcC-----------CchHHHHHHHHHH
Q 007998          420 SNLYA-----AYE-----------RWDDVGRVRKAMK  440 (582)
Q Consensus       420 ~~~~~-----~~g-----------~~~~a~~~~~~m~  440 (582)
                      +..-.     ..|           ....|+++|++..
T Consensus       547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn  583 (677)
T KOG1915|consen  547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERAN  583 (677)
T ss_pred             HHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence            55443     333           4556777777654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=4.7e-10  Score=107.34  Aligned_cols=358  Identities=13%  Similarity=0.076  Sum_probs=226.9

Q ss_pred             hCCCCCCCcchhchHHHHHhc-CCC-CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChh
Q 007998           32 TGQFQSKLFPVRSKIIEFYAL-SPL-NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL  109 (582)
Q Consensus        32 ~~~~~~~~~~~~~~~~~li~~-y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  109 (582)
                      .+-+.|  ++..    -|... +.+ |....|...|-.....-+.-|.+-+....-..+.+    ....... |...|..
T Consensus       158 ~~~~~D--~fll----YL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e----~~~~l~~-~l~~~~h  226 (559)
T KOG1155|consen  158 CGGEKD--EFLL----YLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE----ILSILVV-GLPSDMH  226 (559)
T ss_pred             hcccch--hHHH----HHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH----HHHHHHh-cCcccch
Confidence            344555  6664    33333 333 89999999998765433444444443322222222    2222222 1222222


Q ss_pred             HHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHH
Q 007998          110 TCS--FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR------DIASWNALI  181 (582)
Q Consensus       110 ~~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li  181 (582)
                      .+.  .+..++......+++.+-.+.....|++.+...-+....++-...|+++|+.+|+++...      |..+|...+
T Consensus       227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L  306 (559)
T KOG1155|consen  227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL  306 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence            222  234566667788888888888888888877777777777788888999999999988643      556776665


Q ss_pred             HHHHhCCChhHHHHHHHHH-HHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 007998          182 AGLAQGNLASEAVDLFKRM-KMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL  260 (582)
Q Consensus       182 ~~~~~~g~~~~A~~~~~~m-~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~  260 (582)
                      -  +++.+.+  +..+.+- .+-+  +--+.|...+.+-|+-.++.++|..+|++.++.+.. ....|+.+..=|....+
T Consensus       307 Y--v~~~~sk--Ls~LA~~v~~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKN  379 (559)
T KOG1155|consen  307 Y--VKNDKSK--LSYLAQNVSNID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKN  379 (559)
T ss_pred             H--HHhhhHH--HHHHHHHHHHhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcc
Confidence            3  3333222  2222211 1111  333456777777777778888888888888776533 56777777777888888


Q ss_pred             HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007998          261 LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNS  337 (582)
Q Consensus       261 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~  337 (582)
                      ...|.+-++...  .+.|-..|-.|..+|...+...-|+-.|++....  +| |...|.+|..+|.+.++.++|++.|..
T Consensus       380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykr  457 (559)
T KOG1155|consen  380 THAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKR  457 (559)
T ss_pred             cHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            888888887543  3667778888888888888888888888887763  44 446778888888888888888888888


Q ss_pred             HhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-------C-CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998          338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-------S-MGTDM-VLWQTLLGACQLYGDVEMAEIASRKLVEM  408 (582)
Q Consensus       338 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  408 (582)
                      ....| +.+...+..|.++|-+.++.++|...|++-       + ..|.. ..-.-|..-+.+.+++++|.....+...-
T Consensus       458 ai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  458 AILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             HHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            87744 335566777888888888888887766543       2 22211 11111445556777777777766666555


Q ss_pred             CC
Q 007998          409 GS  410 (582)
Q Consensus       409 ~p  410 (582)
                      ++
T Consensus       537 ~~  538 (559)
T KOG1155|consen  537 ET  538 (559)
T ss_pred             Cc
Confidence            43

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.46  E-value=3e-09  Score=105.96  Aligned_cols=430  Identities=12%  Similarity=0.049  Sum_probs=238.7

Q ss_pred             HHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC--------CCChhHHH
Q 007998            7 LLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN--------APSTNDFN   77 (582)
Q Consensus         7 ~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~--------~~~~~~~~   77 (582)
                      |.-|.+.+  +....++.+.....+. ++.+  +.+.   .+-...=-. |+.+...++.++-.        .-|...|-
T Consensus       412 LwlAlarL--etYenAkkvLNkaRe~-iptd--~~IW---itaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl  483 (913)
T KOG0495|consen  412 LWLALARL--ETYENAKKVLNKAREI-IPTD--REIW---ITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL  483 (913)
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHhh-CCCC--hhHH---HHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence            33444442  3466777777766543 4445  5543   111111122 77777777666531        23455666


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 007998           78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSD--ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAK  155 (582)
Q Consensus        78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~  155 (582)
                      .=...|-..|..--+..+....+..|+.-.  ..||..-...|.+.+.++-++.+|..+++- ++.+..+|...+..=-.
T Consensus       484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~  562 (913)
T KOG0495|consen  484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKS  562 (913)
T ss_pred             HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHh
Confidence            666666666666666666666665554422  235666666666666666666666666554 23344555554444444


Q ss_pred             cCCHHHHHHHHhhcCC---C----------------------------------ChhHHHHHHHHHHhCCChhHHHHHHH
Q 007998          156 VGEIVSAKKVFDEMGV---R----------------------------------DIASWNALIAGLAQGNLASEAVDLFK  198 (582)
Q Consensus       156 ~g~~~~A~~~f~~m~~---~----------------------------------~~~~~~~li~~~~~~g~~~~A~~~~~  198 (582)
                      .|..+.-..+|++...   +                                  +...|-+-+..-..+.++++|..+|.
T Consensus       563 hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla  642 (913)
T KOG0495|consen  563 HGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA  642 (913)
T ss_pred             cCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence            4555555555544421   1                                  33344444444444445555555554


Q ss_pred             HHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCC
Q 007998          199 RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKS  276 (582)
Q Consensus       199 ~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~  276 (582)
                      +....   .|+...|.--+..---++..++|.+++++.++. ++.-.-.|-.+.+.+-+.++++.|.+.|..-.  ++..
T Consensus       643 kar~~---sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~  718 (913)
T KOG0495|consen  643 KARSI---SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS  718 (913)
T ss_pred             HHhcc---CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence            44433   334444433333333344455555555444443 22223444445555555555555555554322  2333


Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhH
Q 007998          277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL  356 (582)
Q Consensus       277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  356 (582)
                      +..|-.+...=-+.|+.-.|..++++....+ +-|...|...+..-.+.|+.+.|..+..+..+ ..+.+...|..-|.+
T Consensus       719 ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp~sg~LWaEaI~l  796 (913)
T KOG0495|consen  719 IPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ-ECPSSGLLWAEAIWL  796 (913)
T ss_pred             chHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCccchhHHHHHHh
Confidence            4445555554455555555555555554432 22334555555555555555555555555544 123344455555555


Q ss_pred             HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 007998          357 LGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR  436 (582)
Q Consensus       357 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~  436 (582)
                      ..+.++-....+.+++-.  -|+.+.-++...+....+++.|.+-|.+.++.+|++-.++..+...+...|.-++-.+++
T Consensus       797 e~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~  874 (913)
T KOG0495|consen  797 EPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVL  874 (913)
T ss_pred             ccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHH
Confidence            555555444444444442  355556666677778889999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCccCCcccEEEE
Q 007998          437 KAMKNRDVKKVPGFSYIEV  455 (582)
Q Consensus       437 ~~m~~~~~~~~~~~s~~~~  455 (582)
                      ++.....  |..|..|..+
T Consensus       875 ~~c~~~E--P~hG~~W~av  891 (913)
T KOG0495|consen  875 KKCETAE--PTHGELWQAV  891 (913)
T ss_pred             HHHhccC--CCCCcHHHHH
Confidence            8776543  4557788644

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=3.1e-10  Score=107.95  Aligned_cols=389  Identities=12%  Similarity=0.052  Sum_probs=253.2

Q ss_pred             HHHhcCCC-CCHHHHHHHHhcCCC----CChh-HHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHH----HH
Q 007998           48 EFYALSPL-NELAYAHALFRQINA----PSTN-DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFAL----KA  117 (582)
Q Consensus        48 ~li~~y~~-g~~~~A~~~f~~~~~----~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll----~~  117 (582)
                      .|.+.|.- .-..+|+..++-+.+    ||.- .--.+...+.+..++.+|+++|+..+..-+..+..+-..++    -.
T Consensus       206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt  285 (840)
T KOG2003|consen  206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT  285 (840)
T ss_pred             HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence            44555555 566788888776653    2322 12234566778889999999999888764444444444444    34


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----------------CChhHHH---
Q 007998          118 CARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV----------------RDIASWN---  178 (582)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------------~~~~~~~---  178 (582)
                      +.+.|.++.|..-|++..+.  .|+..+--.|+-++..-|+-++..+.|.+|..                |+....|   
T Consensus       286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai  363 (840)
T KOG2003|consen  286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI  363 (840)
T ss_pred             EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence            66889999999999999887  56777666677788889999999999988741                2222222   


Q ss_pred             --HHHHHHHhCC--ChhHHHHHHHHHHHcCCCCCCHHH-------------HH--------HHHHHHhccCCcHHHHHHH
Q 007998          179 --ALIAGLAQGN--LASEAVDLFKRMKMEGVFKPNEVT-------------VL--------GALAACGHLGAWKEGDKIH  233 (582)
Q Consensus       179 --~li~~~~~~g--~~~~A~~~~~~m~~~g~~~pd~~t-------------~~--------~ll~a~~~~~~~~~a~~~~  233 (582)
                        .++.-.-+.+  +.++++-.-.+++.--+ .||...             +.        .-..-+.+.|+++.|.+++
T Consensus       364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi-~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil  442 (840)
T KOG2003|consen  364 KNDHLKNMEKENKADAEKAIITAAKIIAPVI-APDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL  442 (840)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHhcccc-ccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence              2333332222  22233322223322222 333210             10        1112356789999999998


Q ss_pred             HHHHHcCCCCchhHHHHHHHHHH------------------------------------hcCCHHHHHHHHhcccCCCCH
Q 007998          234 EYIREERLDMNVVVCNAVIDMYA------------------------------------KCGLLDKAFEVFDNIKCRKSL  277 (582)
Q Consensus       234 ~~~~~~~~~~~~~~~~~li~~y~------------------------------------~~g~~~~A~~~~~~~~~~~~~  277 (582)
                      .-+.+..-..-....+.|--.+.                                    ..|++++|.+.|.+.. ..|.
T Consensus       443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal-~nda  521 (840)
T KOG2003|consen  443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL-NNDA  521 (840)
T ss_pred             HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH-cCch
Confidence            87765432222222222211111                                    3466777777777665 4454


Q ss_pred             HHHHHH---HHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhh
Q 007998          278 VTWNTM---VMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV  354 (582)
Q Consensus       278 ~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  354 (582)
                      ..-.+|   .-.+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|++++.+... -++.|....+.|.
T Consensus       522 sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s-lip~dp~ilskl~  599 (840)
T KOG2003|consen  522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLA  599 (840)
T ss_pred             HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHH
Confidence            433332   33456678888888888776542 234556677777888888888888888876654 2445678888999


Q ss_pred             hHHhhcCCHHHHHHHH-HhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHH
Q 007998          355 DLLGRAGRLQEACDIV-KSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV  432 (582)
Q Consensus       355 ~~~~~~g~~~~A~~~~-~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  432 (582)
                      +.|-+.|+-..|.+.. +....-| +..+..-|...|....-+++++..|+++.-..|+...--..++.++.+.|++..|
T Consensus       600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka  679 (840)
T KOG2003|consen  600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA  679 (840)
T ss_pred             HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence            9999999999998875 4444444 6666666777777778889999999999888896655556677778899999999


Q ss_pred             HHHHHHHHhC
Q 007998          433 GRVRKAMKNR  442 (582)
Q Consensus       433 ~~~~~~m~~~  442 (582)
                      ..+++....+
T Consensus       680 ~d~yk~~hrk  689 (840)
T KOG2003|consen  680 FDLYKDIHRK  689 (840)
T ss_pred             HHHHHHHHHh
Confidence            9999988654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=2.6e-11  Score=121.10  Aligned_cols=278  Identities=12%  Similarity=0.066  Sum_probs=205.1

Q ss_pred             ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCChhHHHHH
Q 007998          123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR------DIASWNALIAGLAQGNLASEAVDL  196 (582)
Q Consensus       123 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~  196 (582)
                      +..+|...|..+... ..-+..+...+..+|...+++++|+++|+.+...      +...|.+.+.-+-+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            456777777774444 3334577777888888888888888888877532      56677776654322    122333


Q ss_pred             H-HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCC
Q 007998          197 F-KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK  275 (582)
Q Consensus       197 ~-~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~  275 (582)
                      + +.+....  +-.+.||..+.++|.-+++.+.|.+.|++.++.+. -....|+.+..=+.....+|.|...|+... ..
T Consensus       409 Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al-~~  484 (638)
T KOG1126|consen  409 LAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKAL-GV  484 (638)
T ss_pred             HHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhh-cC
Confidence            3 3333333  66678899999999989999999999988887642 167788888777888888999999998776 55


Q ss_pred             CHHH---HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHH
Q 007998          276 SLVT---WNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG  351 (582)
Q Consensus       276 ~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  351 (582)
                      |+..   |.-+...|.+.++++.|+-.|++..+  +.|. .+....+...+-+.|+.++|+++++++...+.+ |...--
T Consensus       485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~  561 (638)
T KOG1126|consen  485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY  561 (638)
T ss_pred             CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence            5554   44567789999999999999999887  4554 456667777888899999999999999873322 222222


Q ss_pred             hhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          352 SVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       352 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      -.+..+...+++++|+..++++ .+.| +..++..+...|.+.|+.+.|+.-|.-+.+++|.-
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            3456677889999999999988 4455 56677778889999999999999999999999864

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=4.9e-10  Score=102.52  Aligned_cols=312  Identities=14%  Similarity=0.107  Sum_probs=166.6

Q ss_pred             CCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCc--hHHHHHHHHHHHhcCCHHHH
Q 007998           86 SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGF-LAD--ALLGTTLLDVYAKVGEIVSA  162 (582)
Q Consensus        86 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~--~~~~~~li~~y~~~g~~~~A  162 (582)
                      +.++++|+++|-+|.+.... +..+-.+|-+.|.+.|..+.|+.+|+.+.++.- +.+  ....-.|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            35678888888888774221 233445666777778888888888887776521 111  12233344555555555555


Q ss_pred             HHHHhhcCCCC---hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc
Q 007998          163 KKVFDEMGVRD---IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE  239 (582)
Q Consensus       163 ~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~  239 (582)
                      +.+|..+....   ..+..-|+..|-...+|++|+++-.++.+.+- .+..+-                           
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~e---------------------------  178 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVE---------------------------  178 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhH---------------------------
Confidence            55555554322   22334445555555555555555555554432 221110                           


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 007998          240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLA  317 (582)
Q Consensus       240 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~  317 (582)
                          -...|.-|...+....+++.|..++.+..  .+..+..--.+...+...|+++.|.+.++...+++..--..+...
T Consensus       179 ----IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~  254 (389)
T COG2956         179 ----IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM  254 (389)
T ss_pred             ----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence                01223334444444555666666665443  122333333455566677777777777777766532222345566


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCChH
Q 007998          318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI-VKSVSMGTDMVLWQTLLGACQLYGDVE  396 (582)
Q Consensus       318 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~g~~~  396 (582)
                      |..+|.+.|+.+++..++..+.+....++  .-..|.+.-....-.+.|... .+++.-+|+...+..|+..-...    
T Consensus       255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d----  328 (389)
T COG2956         255 LYECYAQLGKPAEGLNFLRRAMETNTGAD--AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD----  328 (389)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHccCCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc----
Confidence            66777777777777777777766322222  222233332333333344333 33444456665555555432111    


Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEE
Q 007998          397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFF  463 (582)
Q Consensus       397 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~  463 (582)
                                                 +.-|++.+...++..|....++..|.|.+-.-+-..|.|.
T Consensus       329 ---------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~  368 (389)
T COG2956         329 ---------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY  368 (389)
T ss_pred             ---------------------------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence                                       1234566777777788777777777666655555555554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=1.5e-09  Score=106.54  Aligned_cols=387  Identities=10%  Similarity=-0.018  Sum_probs=270.7

Q ss_pred             HHHhcCCC-CCHHHHHHHHhc--CCCCChhHHHHHHHHHHcCCCchHHHHHHH----HHHhC---------CCCCChhH-
Q 007998           48 EFYALSPL-NELAYAHALFRQ--INAPSTNDFNAVLRGLAHSSKPTNAVLWYR----QMLRG---------SHRSDALT-  110 (582)
Q Consensus        48 ~li~~y~~-g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~---------g~~p~~~~-  110 (582)
                      -+.++|.- |.++.|..+...  +...|..+.......+.+..++++|+.++.    .+...         -+.+|..- 
T Consensus        54 ~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~  133 (611)
T KOG1173|consen   54 WLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGE  133 (611)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccc
Confidence            45566655 777777766653  557788888888889999999999999988    32110         01111111 


Q ss_pred             ---HHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH------------------hcCCHHHH
Q 007998          111 ---CSFA-------LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYA------------------KVGEIVSA  162 (582)
Q Consensus       111 ---~~~l-------l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~------------------~~g~~~~A  162 (582)
                         -+.-       -+.+....+.++|+..+..++...+.-. ..+-.|+....                  ...+.+.-
T Consensus       134 ~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~-Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l  212 (611)
T KOG1173|consen  134 DLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF-EAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERL  212 (611)
T ss_pred             cccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH-HHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHH
Confidence               0111       1234455667788887777765532211 11111111110                  00111222


Q ss_pred             HHHHhhc----C----------------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Q 007998          163 KKVFDEM----G----------------VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH  222 (582)
Q Consensus       163 ~~~f~~m----~----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~  222 (582)
                      +.+|+-.    .                +.++...-.-..-+...+++.+..++++...+..  ++....+..-|.++..
T Consensus       213 ~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~e  290 (611)
T KOG1173|consen  213 EILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYE  290 (611)
T ss_pred             HHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHH
Confidence            2233311    0                1133344444556778899999999999998876  6666667777778888


Q ss_pred             cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 007998          223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELF  300 (582)
Q Consensus       223 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~  300 (582)
                      .|+..+-..+=..+++.- +....+|-++.--|...|+..+|++.|.+..  .+.=...|-.....|+-.|..|+|+..+
T Consensus       291 l~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY  369 (611)
T KOG1173|consen  291 LGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAY  369 (611)
T ss_pred             hcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHH
Confidence            888887777777777763 4467889999999999999999999998765  1334578999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC--C---
Q 007998          301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV--S---  374 (582)
Q Consensus       301 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~---  374 (582)
                      ...-+. ++-...-+.-+..-|.+.++.+.|.++|.+...  +-| |+...+-+.-.....+.+.+|..+|+..  +   
T Consensus       370 ~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~  446 (611)
T KOG1173|consen  370 FTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS  446 (611)
T ss_pred             HHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence            887663 111222233455578889999999999999886  334 5566666666667788999999988765  1   


Q ss_pred             ---CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          375 ---MGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       375 ---~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                         ..+ -..+|+.|..+|++.+.+++|+..+++.+.+.|.++.+|..++-+|...|+++.|...|.+..-
T Consensus       447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence               111 3456888999999999999999999999999999999999999999999999999999987654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.38  E-value=1.7e-10  Score=108.06  Aligned_cols=197  Identities=11%  Similarity=0.030  Sum_probs=162.0

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007998          244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA  321 (582)
Q Consensus       244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  321 (582)
                      ....+..+...|.+.|++++|.+.|++..  .+.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            45677788889999999999999998764  23456788888899999999999999999988753 3345667777888


Q ss_pred             HHcCCCHHHHHHHHHHHhHc-CCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007998          322 CNHAGLVDDGVRLFNSMANC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMA  398 (582)
Q Consensus       322 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a  398 (582)
                      +...|++++|.+.+++.... ........+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            88999999999999999873 22234456777888899999999999999876 3334 567888888999999999999


Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      ...+++..+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            9999999999888888888899999999999999999887764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.35  E-value=5.8e-09  Score=98.56  Aligned_cols=285  Identities=11%  Similarity=0.044  Sum_probs=146.4

Q ss_pred             CCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 007998           86 SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKV  165 (582)
Q Consensus        86 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~  165 (582)
                      .|+|.+|.++..+-.+.+..|- ..|.....+.-..|+.+.+-..+..+-+....++..+.-+........|+.+.|+.-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            4666666666666555543322 234444455555666666666666665553344455555555556666666666555


Q ss_pred             Hhhc---CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC
Q 007998          166 FDEM---GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD  242 (582)
Q Consensus       166 f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~  242 (582)
                      .++.   ..+++.........|.+.|++.+...++..|.+.|. -.|+..                 .++          
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~-l~~~e~-----------------~~l----------  227 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGL-LSDEEA-----------------ARL----------  227 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccC-CChHHH-----------------HHH----------
Confidence            4433   234555556666666666666666666666666554 222110                 000          


Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998          243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC  320 (582)
Q Consensus       243 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (582)
                       ...+|+.+++=....+..+.-...++..+  .+.++..-.+++.-+.+.|+.++|.++..+..+.+..|+.    ..+-
T Consensus       228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~  302 (400)
T COG3071         228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLI  302 (400)
T ss_pred             -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHH
Confidence             11233333333333333333333444443  2334444555555666666666666666666665555541    1222


Q ss_pred             HHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHH
Q 007998          321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMA  398 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a  398 (582)
                      .+.+.++.+.-.+..+.-.+ .+-.|  ..+..|...|.+.+.+.+|.+.|+.. +..|+...|+-+..++.+.|+.++|
T Consensus       303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA  380 (400)
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence            34455555555555554444 33333  44445555555666666666655543 4555556666666666666666666


Q ss_pred             HHHHHHHH
Q 007998          399 EIASRKLV  406 (582)
Q Consensus       399 ~~~~~~~~  406 (582)
                      .+..++.+
T Consensus       381 ~~~r~e~L  388 (400)
T COG3071         381 EQVRREAL  388 (400)
T ss_pred             HHHHHHHH
Confidence            55555554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=2.2e-09  Score=98.31  Aligned_cols=252  Identities=16%  Similarity=0.138  Sum_probs=190.0

Q ss_pred             HhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHhcCCH
Q 007998          185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN---VVVCNAVIDMYAKCGLL  261 (582)
Q Consensus       185 ~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~  261 (582)
                      .-+.+.++|.++|-+|.+..  +.+..+-.++.+.+.+.|..+.|..+|+.+.++.--+.   ....-.|..-|...|-+
T Consensus        46 LLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          46 LLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             HhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence            34678999999999998864  55666778889999999999999999999887532111   23445677789999999


Q ss_pred             HHHHHHHhcccCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHcCCCHHHHHHHH
Q 007998          262 DKAFEVFDNIKCRKS--LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV----SYLAALCACNHAGLVDDGVRLF  335 (582)
Q Consensus       262 ~~A~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~  335 (582)
                      |.|+.+|..+..+|.  ......|+..|-...++++|++.-+++.+.+-++..+    .|.-+........+++.|...+
T Consensus       124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l  203 (389)
T COG2956         124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL  203 (389)
T ss_pred             hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            999999998872232  3466778999999999999999999998876565543    4555666666778999999999


Q ss_pred             HHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD--MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       336 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      ++..+.+ +..+..--.+.+.+...|+++.|.+.++.+ ..+|+  ..+...|..+|...|+.++++..+.++.+..+. 
T Consensus       204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-  281 (389)
T COG2956         204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-  281 (389)
T ss_pred             HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-
Confidence            9988743 223333345778899999999999999887 33454  456778889999999999999999999998874 


Q ss_pred             chhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          413 CGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       413 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      +..-..+...-....-.+.|.....+-.
T Consensus       282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql  309 (389)
T COG2956         282 ADAELMLADLIELQEGIDAAQAYLTRQL  309 (389)
T ss_pred             ccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence            3455555655555555666666554443

>PRK12370 invasion protein regulator; Provisional

Probab=99.31  E-value=8.2e-10  Score=116.88  Aligned_cols=263  Identities=14%  Similarity=0.017  Sum_probs=189.3

Q ss_pred             ChhHHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh---------ccCCcHHHHHHHHHHHH
Q 007998          173 DIASWNALIAGLAQ-----GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG---------HLGAWKEGDKIHEYIRE  238 (582)
Q Consensus       173 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~  238 (582)
                      +...|...+.+-..     .+..++|+++|++..+..  +.+...|..+..++.         ..+++++|...++++++
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            55666666666322     234679999999998874  445556666655443         23457899999999998


Q ss_pred             cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-HH
Q 007998          239 ERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV-SY  315 (582)
Q Consensus       239 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~  315 (582)
                      ... .+...+..+..++...|++++|...|++..  .+.+...|..+...+...|++++|+..+++..+.  .|+.. .+
T Consensus       333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~  409 (553)
T PRK12370        333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG  409 (553)
T ss_pred             cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence            763 367888889999999999999999999764  2445678999999999999999999999999885  45532 23


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 007998          316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYG  393 (582)
Q Consensus       316 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g  393 (582)
                      ..++..+...|++++|...++++.....+-+...+..+..+|...|++++|...++++ +..|+ ...++.+...+...|
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS  489 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence            3344456668999999999999886432224455677888899999999999999987 44554 444555556667766


Q ss_pred             ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       394 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                        +.|...++++++..-..+..+..+...|.-.|+-+.+... +++.+.+
T Consensus       490 --~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        490 --ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             --HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence              4888888887775422222233367777778887777766 7676543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.31  E-value=5.1e-09  Score=98.95  Aligned_cols=275  Identities=11%  Similarity=0.081  Sum_probs=202.4

Q ss_pred             cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHH
Q 007998          156 VGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI  232 (582)
Q Consensus       156 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~  232 (582)
                      .|++..|++...+-.+   ..+..|..-+.+--+.|+.+.+-.++.+.-+... .++...+.+........|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchHHHHHHHHHHHHhCCCchhHHHH
Confidence            5888888888776532   3445566666777788888888888888876632 45555666666777888888888888


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCC-----------HHHHHHHHHHHHhCCChhHHHHHHH
Q 007998          233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS-----------LVTWNTMVMAFAVHGDGPRALELFE  301 (582)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~  301 (582)
                      ..++.+.+.. ++.+.....++|.+.|++.+...+...+. +..           ..+|+.++.-....+..+.-...|+
T Consensus       176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~-ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLR-KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHH-HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            8888877643 67777888888888888888888888776 221           2357777766666666666555666


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHH----HhCCCCC
Q 007998          302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV----KSVSMGT  377 (582)
Q Consensus       302 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~~~~~p  377 (582)
                      +.-.+ .+-+...-.+++.-+.+.|+.++|.++..+..+.+..|+...   ++ ...+-++.+.-.+..    +..|.  
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~~-~~l~~~d~~~l~k~~e~~l~~h~~--  326 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---LI-PRLRPGDPEPLIKAAEKWLKQHPE--  326 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---HH-hhcCCCCchHHHHHHHHHHHhCCC--
Confidence            65443 344555566777788899999999999999999777776222   11 223445544444333    34454  


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      ++..+.+|...|.+++.+.+|...|+..++..| +...|..++.++.+.|+..+|.+++++-..
T Consensus       327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         327 DPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            447889999999999999999999999999998 568999999999999999999999987663

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.30  E-value=2.1e-09  Score=108.65  Aligned_cols=230  Identities=15%  Similarity=0.169  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHhccCCcHHHHHHHHHHHHc-----CC-CCch-hHHHHHHHHHHhcCCHHHHHHHHhccc---------CC
Q 007998          211 VTVLGALAACGHLGAWKEGDKIHEYIREE-----RL-DMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIK---------CR  274 (582)
Q Consensus       211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~---------~~  274 (582)
                      .|...+...|...|+++.|...+...++.     |. .|.+ ...+.+...|...+++++|..+|+++.         ..
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            46777888999999999999999887754     21 1222 333457788999999999999998764         11


Q ss_pred             C-CHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----cCCC-CCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhH-cC--C
Q 007998          275 K-SLVTWNTMVMAFAVHGDGPRALELFEQMGR-----AGVK-PDD-VSYLAALCACNHAGLVDDGVRLFNSMAN-CG--V  343 (582)
Q Consensus       275 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~--~  343 (582)
                      | -..+++.|..+|...|++++|...+++..+     .|.. |.. .-++.+...|...+.+++|..+++...+ ..  +
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            2 234678888899999999998888877654     1222 222 2466777789999999999999998877 32  2


Q ss_pred             ccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH--
Q 007998          344 KPN----MKHYGSVVDLLGRAGRLQEACDIVKSV---------SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVE--  407 (582)
Q Consensus       344 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--  407 (582)
                      .++    ..+++.|...|...|++++|++++++.         ...+ ....++.|...|.+.+++++|.++|.+...  
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            222    367899999999999999999999876         1122 245677888999999999999999998654  


Q ss_pred             --cCCC---CchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          408 --MGSN---NCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       408 --~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                        .+|+   ...+|..|+..|.+.|++++|.++.+...
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence              3454   45688899999999999999999988765

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.3e-08  Score=96.17  Aligned_cols=301  Identities=11%  Similarity=-0.013  Sum_probs=217.7

Q ss_pred             hHHHHHHHHHHh--cCChHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH---HH
Q 007998          109 LTCSFALKACAR--VLALFETLQIHSHVLR-HGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNAL---IA  182 (582)
Q Consensus       109 ~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~  182 (582)
                      .+...-+.+++.  .++-..+.+.+-.+.. .-++.|+.....+..+|...|+.++|+..|++...-|+.+...|   .-
T Consensus       195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~  274 (564)
T KOG1174|consen  195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAV  274 (564)
T ss_pred             cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHH
Confidence            344444444443  2344444444433333 33566788899999999999999999999998765544433332   33


Q ss_pred             HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007998          183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD  262 (582)
Q Consensus       183 ~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~  262 (582)
                      .+.+.|+++....+...+....  +-....|..-+......++++.|..+-++.++... .++..+-.-...+...|+.+
T Consensus       275 LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~  351 (564)
T KOG1174|consen  275 LLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHT  351 (564)
T ss_pred             HHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchH
Confidence            4567889998888888887553  33444455555555677888888888888877642 24555555567788899999


Q ss_pred             HHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH-HHHH-cCCCHHHHHHHHHHH
Q 007998          263 KAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL-CACN-HAGLVDDGVRLFNSM  338 (582)
Q Consensus       263 ~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~~  338 (582)
                      +|.-.|+...  .+-+..+|.-|+..|...|.+.+|..+-+...+. ++.+..+...+. ..|. ....-++|.++++..
T Consensus       352 ~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~  430 (564)
T KOG1174|consen  352 QAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS  430 (564)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence            9999998654  2458889999999999999999999888776654 344556665552 3333 233457888888887


Q ss_pred             hHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998          339 ANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       339 ~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  415 (582)
                      .+  +.|+ ....+.+...+.+.|+.+++..++++. ...||....+.|...++..+.+++|...|..+++++|++..+
T Consensus       431 L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s  507 (564)
T KOG1174|consen  431 LK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT  507 (564)
T ss_pred             hc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence            76  3454 355667788899999999999999876 667899999999999999999999999999999999987544

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.28  E-value=1.3e-10  Score=119.18  Aligned_cols=263  Identities=14%  Similarity=0.152  Sum_probs=192.5

Q ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCC
Q 007998          195 DLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR  274 (582)
Q Consensus       195 ~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~  274 (582)
                      .++-.+...|+ .|+.+||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+.        .
T Consensus        11 nfla~~e~~gi-~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------e   80 (1088)
T KOG4318|consen   11 NFLALHEISGI-LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------E   80 (1088)
T ss_pred             hHHHHHHHhcC-CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------C
Confidence            45677888999 999999999999999999999999 9999988888888999999999999988877664        7


Q ss_pred             CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhh
Q 007998          275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSV  353 (582)
Q Consensus       275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l  353 (582)
                      |...+|+.|..+|.++|+... ++..++           -...+...++..|.-..-..++..+.- .+.-||...   .
T Consensus        81 p~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~  145 (1088)
T KOG4318|consen   81 PLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---A  145 (1088)
T ss_pred             CchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---H
Confidence            888999999999999999866 333222           122344455666666665666655443 445566553   4


Q ss_pred             hhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHH
Q 007998          354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG-DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV  432 (582)
Q Consensus       354 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  432 (582)
                      +....-.|.++.+++++..+|...-......+++-+.... .+++-..+.+...+ .| ++.+|..+...-..+|+.+.|
T Consensus       146 illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~A  223 (1088)
T KOG4318|consen  146 ILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGA  223 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhH
Confidence            5556677888899999988864321111111344443332 33444444444444 44 778999999999999999999


Q ss_pred             HHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCcccc
Q 007998          433 GRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAGTSCVL  499 (582)
Q Consensus       433 ~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~  499 (582)
                      ..+...|+++|+...+++.|..        +.|-       +....++...+-|++.|+.|+..+.-
T Consensus       224 k~ll~emke~gfpir~HyFwpL--------l~g~-------~~~q~~e~vlrgmqe~gv~p~seT~a  275 (1088)
T KOG4318|consen  224 KNLLYEMKEKGFPIRAHYFWPL--------LLGI-------NAAQVFEFVLRGMQEKGVQPGSETQA  275 (1088)
T ss_pred             HHHHHHHHHcCCCcccccchhh--------hhcC-------ccchHHHHHHHHHHHhcCCCCcchhH
Confidence            9999999999999999999963        3332       23345556778899999999987553

>PF13041 PPR_2: PPR repeat family

Probab=99.27  E-value=1.2e-11  Score=84.25  Aligned_cols=50  Identities=30%  Similarity=0.550  Sum_probs=47.0

Q ss_pred             CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007998          275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH  324 (582)
Q Consensus       275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  324 (582)
                      ||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999999999999999999999999999999999874

>PF13041 PPR_2: PPR repeat family

Probab=99.27  E-value=8.3e-12  Score=85.08  Aligned_cols=50  Identities=16%  Similarity=0.399  Sum_probs=47.0

Q ss_pred             CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 007998           71 PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR  120 (582)
Q Consensus        71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  120 (582)
                      ||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            79999999999999999999999999999999999999999999999864

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=2.5e-08  Score=96.38  Aligned_cols=352  Identities=10%  Similarity=-0.021  Sum_probs=241.6

Q ss_pred             HHHhcCCC-CCHHHHHHHHhcCC--CCC-hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcC
Q 007998           48 EFYALSPL-NELAYAHALFRQIN--APS-TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL-TCSFALKACARVL  122 (582)
Q Consensus        48 ~li~~y~~-g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~  122 (582)
                      ..-+-|-+ |.+++|.+.+....  .|| ++-|.....+|...|+|++..+.-...++  +.|+-. .+..-.+++-..|
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg  197 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG  197 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence            44455556 99999999999865  477 88899999999999999998887777766  344422 3444444555555


Q ss_pred             ChHHHHH----------------------HHHH--------HHHcCCCCchHHHHHHHHHHHhc------------C---
Q 007998          123 ALFETLQ----------------------IHSH--------VLRHGFLADALLGTTLLDVYAKV------------G---  157 (582)
Q Consensus       123 ~~~~a~~----------------------~~~~--------~~~~g~~~~~~~~~~li~~y~~~------------g---  157 (582)
                      ++.+++.                      ++..        -.+.+-+|.. -....|..|...            +   
T Consensus       198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~l-PS~~fi~syf~sF~~~~~~~~~~~~~ks  276 (606)
T KOG0547|consen  198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVL-PSATFIASYFGSFHADPKPLFDNKSDKS  276 (606)
T ss_pred             cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCC-CcHHHHHHHHhhccccccccccCCCccc
Confidence            5554432                      1111        1110111111 111222222210            0   


Q ss_pred             --CHHHHHHHHhhc------------C----------CCC---------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 007998          158 --EIVSAKKVFDEM------------G----------VRD---------IASWNALIAGLAQGNLASEAVDLFKRMKMEG  204 (582)
Q Consensus       158 --~~~~A~~~f~~m------------~----------~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  204 (582)
                        ...++.+.+..-            .          ..+         ..+.+.-...+.-.|+..+|.+-|+..+...
T Consensus       277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~  356 (606)
T KOG0547|consen  277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD  356 (606)
T ss_pred             hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence              011122111111            0          011         1222222334566799999999999999886


Q ss_pred             CCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHH
Q 007998          205 VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNT  282 (582)
Q Consensus       205 ~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~  282 (582)
                      . . +...|.-+..+|....+.++..+.|....+.+.. +..+|..-.+++.-.+++++|..-|++..  .+.++..|-.
T Consensus       357 ~-~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ  433 (606)
T KOG0547|consen  357 P-A-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ  433 (606)
T ss_pred             c-c-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence            3 3 3333888888999999999999999999988644 78888889999999999999999999765  2345667777


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC---------hhhHHhh
Q 007998          283 MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN---------MKHYGSV  353 (582)
Q Consensus       283 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~---------~~~~~~l  353 (582)
                      +..+..+.+++++++..|++..+. ++.-...|+.....+...++++.|.+.|+..++.  .|+         ..+--++
T Consensus       434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~  510 (606)
T KOG0547|consen  434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKAL  510 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhH
Confidence            777778889999999999999886 4444578888999999999999999999999872  222         1111122


Q ss_pred             hhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998          354 VDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG  409 (582)
Q Consensus       354 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  409 (582)
                      +-.- =.+++..|.+++++. .+.| ....|.+|...-.+.|+.++|+++|++...+-
T Consensus       511 l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  511 LVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             hhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            2111 238999999999987 6666 56789999999999999999999999987764

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.25  E-value=1.3e-09  Score=111.97  Aligned_cols=249  Identities=11%  Similarity=0.047  Sum_probs=128.3

Q ss_pred             HHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 007998           94 LWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD  173 (582)
Q Consensus        94 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~  173 (582)
                      .++..|...|+.|+..||.++|.-|+..|+++.|- +|..|.-...+.+..+++.++....+.++.+.+.       +|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            34555666677777777777777777777776666 6666666666666666777776666666665554       455


Q ss_pred             hhHHHHHHHHHHhCCChhHHHHHHHH-HH-------HcCCCCCCHHHHHHHHHHHh--------------ccCCcHHHHH
Q 007998          174 IASWNALIAGLAQGNLASEAVDLFKR-MK-------MEGVFKPNEVTVLGALAACG--------------HLGAWKEGDK  231 (582)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~~pd~~t~~~ll~a~~--------------~~~~~~~a~~  231 (582)
                      ..+|+.|..+|.++|+..- ++..++ |.       ..|+ ..-..-+-..+.+|-              ..|-++.+.+
T Consensus        83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gv-gs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk  160 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGV-GSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK  160 (1088)
T ss_pred             hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhcc-CcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777766543 222222 11       1222 111111111111111              1111222222


Q ss_pred             HHHHHHHcCCCCchhHHHH---HHHHHHhc-CCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC
Q 007998          232 IHEYIREERLDMNVVVCNA---VIDMYAKC-GLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG  307 (582)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~---li~~y~~~-g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  307 (582)
                      +...+      |....++.   +++-.... ..+++-...-......++..++.+.+..-...|+.+.|..++.+|.+.|
T Consensus       161 ll~~~------Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g  234 (1088)
T KOG4318|consen  161 LLAKV------PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG  234 (1088)
T ss_pred             HHhhC------CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence            21111      11000000   01111111 1122222222222223667777777777777777777777777777777


Q ss_pred             CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC
Q 007998          308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG  361 (582)
Q Consensus       308 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  361 (582)
                      ++.+..-|-.++-+   .++...+..+..-|.+.|+.|+.+|+.-.+-.+...|
T Consensus       235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~  285 (1088)
T KOG4318|consen  235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG  285 (1088)
T ss_pred             CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence            76666555555533   5666666666666666777777777665555444433

>PRK12370 invasion protein regulator; Provisional

Probab=99.23  E-value=8.7e-09  Score=109.12  Aligned_cols=240  Identities=10%  Similarity=-0.037  Sum_probs=143.3

Q ss_pred             ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH---------hcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCh
Q 007998          123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYA---------KVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLA  190 (582)
Q Consensus       123 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~  190 (582)
                      +.++|.+.++++++..+. +...+..+..+|.         ..+++++|...+++..+   .+..+|..+...+...|++
T Consensus       276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            356677777777766422 3444555544443         22346777777776643   2566777777777777888


Q ss_pred             hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007998          191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN  270 (582)
Q Consensus       191 ~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~  270 (582)
                      ++|+..|++..+.+  +.+...+..+..++...|++++|...+++.++.... +...+..++..+...|++++|...+++
T Consensus       355 ~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        355 IVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            88888887777764  455666777777777778888888888777776433 222333344445567777888777776


Q ss_pred             cc--CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHhH-cCCcc
Q 007998          271 IK--CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY-LAALCACNHAGLVDDGVRLFNSMAN-CGVKP  345 (582)
Q Consensus       271 ~~--~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~  345 (582)
                      ..  ..| +...+..+..+|...|+.++|...++++...  .|+..+. +.+...+...|  +.+...++.+.+ ..-.+
T Consensus       432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~  507 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID  507 (553)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence            53  123 3445666777777788888888887776543  4444333 33333445555  466666666665 33333


Q ss_pred             ChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998          346 NMKHYGSVVDLLGRAGRLQEACDIVKSV  373 (582)
Q Consensus       346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~  373 (582)
                      ....+..  ..|.-.|+-+.+..+ +++
T Consensus       508 ~~~~~~~--~~~~~~g~~~~~~~~-~~~  532 (553)
T PRK12370        508 NNPGLLP--LVLVAHGEAIAEKMW-NKF  532 (553)
T ss_pred             cCchHHH--HHHHHHhhhHHHHHH-HHh
Confidence            3333322  334445555555444 555

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.23  E-value=3.8e-09  Score=98.88  Aligned_cols=193  Identities=10%  Similarity=-0.042  Sum_probs=103.7

Q ss_pred             hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 007998           73 TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDV  152 (582)
Q Consensus        73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~  152 (582)
                      ...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.++..++.. +.+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            3455566666666667777776666665542 1134455555566666666666666666666554 2234455555566


Q ss_pred             HHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcH
Q 007998          153 YAKVGEIVSAKKVFDEMGV-----RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK  227 (582)
Q Consensus       153 y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~  227 (582)
                      |...|++++|.+.|++...     .....|..+...+...|++++|.+.|.+.....  +.+...+..+...+...|+++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHH
Confidence            6666666666666655432     122344445555556666666666666555443  333444555555555555555


Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007998          228 EGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN  270 (582)
Q Consensus       228 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~  270 (582)
                      +|...+++..+. .+.+...+..+...+...|+.++|..+.+.
T Consensus       187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  228 (234)
T TIGR02521       187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ  228 (234)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            555555555444 122333444444445555555555544443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.20  E-value=1.1e-09  Score=100.16  Aligned_cols=232  Identities=11%  Similarity=0.061  Sum_probs=173.7

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 007998          178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK  257 (582)
Q Consensus       178 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~  257 (582)
                      +-|..+|.+.|.+.+|.+.|+.-+..   .|-+.||..+-.+|.+..+++.|..++.+-++. ++.|+.....+...+-.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence            56788899999999999999888877   667778888888999999999999888888776 34456666667777777


Q ss_pred             cCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 007998          258 CGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF  335 (582)
Q Consensus       258 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  335 (582)
                      .++.++|.++|+...  .+.++.+...+..+|.-.++++-|+..|+++..-|+. +...|+.+.-+|.-.++++-+..-|
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence            888888888887654  2345556666667777777888888888887777654 4456666666676677777666666


Q ss_pred             HHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998          336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       336 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  415 (582)
                      ++...---.|                  ++            -..+|..|.......||+..|.+.|+-.+..+|++..+
T Consensus       382 ~RAlstat~~------------------~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea  431 (478)
T KOG1129|consen  382 QRALSTATQP------------------GQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA  431 (478)
T ss_pred             HHHHhhccCc------------------ch------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence            6555411111                  11            23456666666677889999999999999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          416 FVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       416 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ++.|+..-.+.|++++|..+++...+...
T Consensus       432 lnNLavL~~r~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  432 LNNLAVLAARSGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             HHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence            99999999999999999999988776543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=4.7e-08  Score=96.31  Aligned_cols=280  Identities=12%  Similarity=0.020  Sum_probs=216.8

Q ss_pred             CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 007998          139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG  215 (582)
Q Consensus       139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~  215 (582)
                      ...++.+.....+-+...+++.+..++++..-+.   +...+..-|..+...|+..+-..+=.+|.+.-  |..+.+|-+
T Consensus       240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~a  317 (611)
T KOG1173|consen  240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFA  317 (611)
T ss_pred             hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhh
Confidence            3445666667777888899999999999988654   34556666788899999998888888898874  677889999


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCCh
Q 007998          216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDG  293 (582)
Q Consensus       216 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~  293 (582)
                      +..-|-..|..++|+++|.+....... -...|-.+...|+-.|.-++|...+....  .+.....+--+..-|.+.++.
T Consensus       318 Vg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~  396 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL  396 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence            999999999999999999988765321 35678888999999999999988776443  122222233355568889999


Q ss_pred             hHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhH--cCCc----cChhhHHhhhhHHhhcCCHHHH
Q 007998          294 PRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMAN--CGVK----PNMKHYGSVVDLLGRAGRLQEA  366 (582)
Q Consensus       294 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~--~~~~----~~~~~~~~li~~~~~~g~~~~A  366 (582)
                      +-|.+.|.+...  +.|+. ..++-+.-..-+.+.+.+|..+|+..+.  ..+.    ....+++.|..+|.+.+++++|
T Consensus       397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence            999999998875  55654 4555555555567899999999998874  1111    1345678899999999999999


Q ss_pred             HHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          367 CDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY  423 (582)
Q Consensus       367 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  423 (582)
                      +..+++. ...| |..++.++.-.|...|+++.|...|.+.+-+.|++..+-..|..+.
T Consensus       475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            9999976 3344 8889999999999999999999999999999998866655555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.13  E-value=1.6e-08  Score=98.08  Aligned_cols=213  Identities=15%  Similarity=0.100  Sum_probs=145.3

Q ss_pred             CCcHHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHH
Q 007998          224 GAWKEGDKIHEYIREER-LDM--NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALE  298 (582)
Q Consensus       224 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~  298 (582)
                      +..+.+..-+.+++... ..|  ....|..+...|.+.|+.++|...|++..  .+.+...|+.+...|...|++++|+.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            45566666666666432 222  24567778888889999999998888654  24567889999999999999999999


Q ss_pred             HHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CC
Q 007998          299 LFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SM  375 (582)
Q Consensus       299 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~  375 (582)
                      .|++..+.  .|+ ..++..+..++...|++++|.+.|+...+.  .|+..........+...+++++|.+.+++.  ..
T Consensus       120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            99988873  565 457777777888889999999999988873  343322222222344567889999888654  22


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------HcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLV-------EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       376 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      .|+...|   .......|+...+ ..++.+.       ++.|..+.+|..++.+|...|++++|...|++..+.++
T Consensus       196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            3332222   1222335555443 3444444       44555667899999999999999999999998886654

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.12  E-value=1.5e-08  Score=102.68  Aligned_cols=232  Identities=15%  Similarity=0.094  Sum_probs=169.7

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHc-----CCCCCCHHHHH-HHHHHHhccCCcHHHHHHHHHHHHc-----CCC-C
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKME-----GVFKPNEVTVL-GALAACGHLGAWKEGDKIHEYIREE-----RLD-M  243 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~~pd~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~-----~~~-~  243 (582)
                      +...+...|...|++++|+.+++..++.     |...|...+.. .+...|...+++.+|..+|++++..     |-. |
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            4444778888888888888888877654     22144444433 3667788889999999888887643     211 1


Q ss_pred             -chhHHHHHHHHHHhcCCHHHHHHHHhccc---------CCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHhc---CCC
Q 007998          244 -NVVVCNAVIDMYAKCGLLDKAFEVFDNIK---------CRKSLV-TWNTMVMAFAVHGDGPRALELFEQMGRA---GVK  309 (582)
Q Consensus       244 -~~~~~~~li~~y~~~g~~~~A~~~~~~~~---------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~  309 (582)
                       -..+++.|..+|.+.|++++|...+++..         ..|.+. ..+.++..+...+++++|..++++..+.   -+.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence             24566777778999999998888777542         123333 3566777888999999999999876542   233


Q ss_pred             CCH----HHHHHHHHHHHcCCCHHHHHHHHHHHhH-c---CC--cc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-----
Q 007998          310 PDD----VSYLAALCACNHAGLVDDGVRLFNSMAN-C---GV--KP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-----  373 (582)
Q Consensus       310 p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~---~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-----  373 (582)
                      ++.    .+++.+...|.+.|++++|.++|++++. .   +-  .+ ....++.|...|.+.+++++|.++|.+.     
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            333    4789999999999999999999998887 2   11  12 2356677888999999999898888754     


Q ss_pred             ---CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998          374 ---SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVE  407 (582)
Q Consensus       374 ---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  407 (582)
                         +..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence               34454 56899999999999999999999998874

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.09  E-value=5e-07  Score=92.38  Aligned_cols=399  Identities=13%  Similarity=0.043  Sum_probs=254.8

Q ss_pred             CCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC-h
Q 007998           34 QFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINA---PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD-A  108 (582)
Q Consensus        34 ~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~  108 (582)
                      +..|  +.++   -.|.-+..+ |+++.+.+.|++..+   .....|+.+...|+-.|.-..|+.+++.-......|+ .
T Consensus       319 ~qnd--~ai~---d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~  393 (799)
T KOG4162|consen  319 FQND--AAIF---DHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI  393 (799)
T ss_pred             hcch--HHHH---HHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence            3445  6665   455555556 999999999998643   3456799999999999999999999988766443344 3


Q ss_pred             hHHHHHHHHHH-hcCChHHHHHHHHHHHHc--CC--CCchHHHHHHHHHHHhcC-----------CHHHHHHHHhhcCC-
Q 007998          109 LTCSFALKACA-RVLALFETLQIHSHVLRH--GF--LADALLGTTLLDVYAKVG-----------EIVSAKKVFDEMGV-  171 (582)
Q Consensus       109 ~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~g-----------~~~~A~~~f~~m~~-  171 (582)
                      ..+-..-+.|. +.+..+++...-.+++..  +.  ......+-.+.-+|...-           ...++.+.+++..+ 
T Consensus       394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~  473 (799)
T KOG4162|consen  394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF  473 (799)
T ss_pred             hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence            44444445555 456777777777776662  11  122344555555554321           23455666666532 


Q ss_pred             --CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHH
Q 007998          172 --RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN  249 (582)
Q Consensus       172 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  249 (582)
                        .|..+-.-+.--|+..++.+.|++..++..+.+. ..+...|..+.-.+...+++.+|..+.+.....- ..|.....
T Consensus       474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~-~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~  551 (799)
T KOG4162|consen  474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNR-GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMD  551 (799)
T ss_pred             CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhch
Confidence              2333323334446778889999999999988855 7788888888888888999999999888776431 11111111


Q ss_pred             HHHHHHHhcCCHHHHHH--------------------------HHhccc----CCCCHH-HHHHHHHHHHhCCChhHHHH
Q 007998          250 AVIDMYAKCGLLDKAFE--------------------------VFDNIK----CRKSLV-TWNTMVMAFAVHGDGPRALE  298 (582)
Q Consensus       250 ~li~~y~~~g~~~~A~~--------------------------~~~~~~----~~~~~~-~~~~li~~~~~~g~~~~A~~  298 (582)
                      .-+..-..-++.++|..                          .+..+.    ...|.. ++..+. +... -+.+.+..
T Consensus       552 ~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~s  629 (799)
T KOG4162|consen  552 GKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGS  629 (799)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhccc
Confidence            11111112333333322                          222221    011111 222211 1111 01000000


Q ss_pred             HHHHHHhcCCC--CCH------HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHH
Q 007998          299 LFEQMGRAGVK--PDD------VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV  370 (582)
Q Consensus       299 ~~~~m~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  370 (582)
                      -.. |...-+.  |+.      ..|......+...+..++|...+.+..... ......|......+...|.+++|.+.|
T Consensus       630 e~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af  707 (799)
T KOG4162|consen  630 ELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF  707 (799)
T ss_pred             ccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence            000 1111122  332      234556667888999999988888777621 334566666778888999999999988


Q ss_pred             HhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          371 KSV-SMGT-DMVLWQTLLGACQLYGDVEMAEI--ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       371 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ... .+.| ++.+..++...+...|+...|..  ++..+++.+|.++..|..|+.++.+.|+.++|...|+...+..
T Consensus       708 ~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  708 LVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            765 6667 57788999999999999888888  9999999999999999999999999999999999999877543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=4.1e-07  Score=84.58  Aligned_cols=380  Identities=12%  Similarity=0.049  Sum_probs=218.8

Q ss_pred             hcCCCCCHHHHHHHHhcCCC------CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 007998           51 ALSPLNELAYAHALFRQINA------PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL  124 (582)
Q Consensus        51 ~~y~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  124 (582)
                      +..++.++.-|+.+++--..      .++..|  +...+-+.|++++|+..+.-..+.. .|+...+..+.....-.|.+
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            44444788888888765331      123333  3446678899999999999887753 55666777777666678899


Q ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC------------------------------CHHHHHHHHhhcCC--C
Q 007998          125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVG------------------------------EIVSAKKVFDEMGV--R  172 (582)
Q Consensus       125 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g------------------------------~~~~A~~~f~~m~~--~  172 (582)
                      .+|+++-....+     ++.....|.+.--+.+                              .+.+|.+++.++..  |
T Consensus       108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~  182 (557)
T KOG3785|consen  108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP  182 (557)
T ss_pred             HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            999887765422     2222222223333333                              34555556555532  2


Q ss_pred             ChhHHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHhccCCcHHHHHH--------------HHHH
Q 007998          173 DIASWNA-LIAGLAQGNLASEAVDLFKRMKMEGVFKPN-EVTVLGALAACGHLGAWKEGDKI--------------HEYI  236 (582)
Q Consensus       173 ~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~~pd-~~t~~~ll~a~~~~~~~~~a~~~--------------~~~~  236 (582)
                      +-...|. |.-.|.+..-++-+.++++--++.   -|| +...+.......+.=.-..|.+-              .+.+
T Consensus       183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l  259 (557)
T KOG3785|consen  183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL  259 (557)
T ss_pred             hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence            2333333 233455666666666666655544   333 33333332222222111111111              1111


Q ss_pred             HHcCC------------CC-----chhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCC-------
Q 007998          237 REERL------------DM-----NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD-------  292 (582)
Q Consensus       237 ~~~~~------------~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~-------  292 (582)
                      .+.++            -|     -+..--.|+-.|.+.+++++|..+...+. +.++.-|-.-.-.++..|+       
T Consensus       260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~-PttP~EyilKgvv~aalGQe~gSreH  338 (557)
T KOG3785|consen  260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD-PTTPYEYILKGVVFAALGQETGSREH  338 (557)
T ss_pred             HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC-CCChHHHHHHHHHHHHhhhhcCcHHH
Confidence            11110            01     12233345667889999999999999887 5554444333333344333       


Q ss_pred             hhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHH
Q 007998          293 GPRALELFEQMGRAGVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVK  371 (582)
Q Consensus       293 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  371 (582)
                      ..-|.+.|+-.-+.+..-|.. ---++.+++.-..++++...+++.+..+=...|...+| +.++++..|.+.+|+++|-
T Consensus       339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~  417 (557)
T KOG3785|consen  339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFI  417 (557)
T ss_pred             HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHh
Confidence            345555555444443332221 11223333444567888888888888854456666665 7889999999999999998


Q ss_pred             hCC--CCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcC-CCC-chhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007998          372 SVS--MGTDMVLWQTLL-GACQLYGDVEMAEIASRKLVEMG-SNN-CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK  446 (582)
Q Consensus       372 ~~~--~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  446 (582)
                      .+.  .-.|..+|.+++ ..|.+.++++.|..++-   +.+ |.+ -.....+++-|.+++.+--|.+.|+.+...+..|
T Consensus       418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p  494 (557)
T KOG3785|consen  418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP  494 (557)
T ss_pred             hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence            873  113677777766 55677888888866654   444 322 2344467788889999999999999887655443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.07  E-value=9.2e-09  Score=94.32  Aligned_cols=220  Identities=11%  Similarity=-0.026  Sum_probs=100.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCCh
Q 007998          114 ALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--R-DIASWNALIAGLAQGNLA  190 (582)
Q Consensus       114 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~  190 (582)
                      +.++|.+.|.+.+|.+-++..++.  .|-+.+|-.|-.+|.+..+...|+.+|.+-.+  | |+....-+.+.+-..++.
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~  306 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ  306 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence            334444444444444444444444  22233333344444444444455444444321  1 222233334444444455


Q ss_pred             hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007998          191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN  270 (582)
Q Consensus       191 ~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~  270 (582)
                      ++|.++|+...+..  +.+......+...|.-.+++|.|..+++++++.|.. +...|+.+.-+|.-.+++|-++.-|++
T Consensus       307 ~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  307 EDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             HHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            55555555544443  334444444444444445555555555555555533 444444444444444555555544443


Q ss_pred             cc---CCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998          271 IK---CRKS--LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMAN  340 (582)
Q Consensus       271 ~~---~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  340 (582)
                      ..   ..|+  ...|..+.......|++.-|.+.|+-....  .|+ ...++.|.-.-.+.|++++|..+++....
T Consensus       384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            32   1222  234444444444555555555555544432  222 23455544444555555555555555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.05  E-value=1.7e-07  Score=90.95  Aligned_cols=219  Identities=11%  Similarity=0.014  Sum_probs=143.8

Q ss_pred             CChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007998          188 NLASEAVDLFKRMKMEGVFKPN--EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF  265 (582)
Q Consensus       188 g~~~~A~~~~~~m~~~g~~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~  265 (582)
                      +..+.++.-+.+++...-..|+  ...|......+...|+.++|...|.+.++... .+...|+.+...|...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence            4556677777777654211222  34566677777788888888888888877653 35778888888888888888888


Q ss_pred             HHHhccc-C-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC
Q 007998          266 EVFDNIK-C-RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV  343 (582)
Q Consensus       266 ~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  343 (582)
                      +.|++.. . +.+..+|..+...+...|++++|++.|++..+.  .|+..........+...++.++|...|.+.... .
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~  195 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L  195 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence            8888664 2 335667888888888888899998888888764  455432222222344567888888888765542 1


Q ss_pred             ccChhhHHhhhhHHhhcCCHH--HHHHHHHh-CCC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998          344 KPNMKHYGSVVDLLGRAGRLQ--EACDIVKS-VSM----GT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC  413 (582)
Q Consensus       344 ~~~~~~~~~li~~~~~~g~~~--~A~~~~~~-~~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  413 (582)
                      .|+...+ .++..+  .|++.  ++.+.+.+ ...    .| ....|..+...+...|++++|...|+++++.+|.+.
T Consensus       196 ~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~  270 (296)
T PRK11189        196 DKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF  270 (296)
T ss_pred             CccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence            2332222 233333  34433  33333322 111    11 345788899999999999999999999999997553

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.5e-06  Score=81.15  Aligned_cols=282  Identities=10%  Similarity=-0.012  Sum_probs=183.3

Q ss_pred             CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHH
Q 007998          172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV-TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNA  250 (582)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  250 (582)
                      .|+.....+...+...|+.++|+..|++....   .|+.. ....-.-.+.+.|+.+....+...+.... +-+...|-.
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~---dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV  305 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA---NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV  305 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC---ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence            36777788888888888888888888887654   23322 22222233456677777777666665432 112222322


Q ss_pred             HHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCC
Q 007998          251 VIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGL  327 (582)
Q Consensus       251 li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~  327 (582)
                      -........+++.|+.+-++..  .+.++..+-.-...+.+.|+.++|.-.|+..+.  +.| +...|..|+..|.-.|.
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhch
Confidence            3333444567777777776554  134444554445677788888888888888776  354 44688888888888888


Q ss_pred             HHHHHHHHHHHhHcCCccChhhHHhhh-hHHh-hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 007998          328 VDDGVRLFNSMANCGVKPNMKHYGSVV-DLLG-RAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASR  403 (582)
Q Consensus       328 ~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~  403 (582)
                      ..+|.-.-+...+ -++.+..+.+.+. ..+. ..---++|.+++++. .++|+ ....+.+...|...|..+.+..+++
T Consensus       384 ~kEA~~~An~~~~-~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe  462 (564)
T KOG1174|consen  384 FKEANALANWTIR-LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE  462 (564)
T ss_pred             HHHHHHHHHHHHH-HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence            8888776666555 1123333333221 1121 122246788888765 66775 3455666778888888888998888


Q ss_pred             HHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHH
Q 007998          404 KLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIM  483 (582)
Q Consensus       404 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  483 (582)
                      +.+...|+ ...++.|+..+.....+++|...|......                          .|+.+.+.+-++++.
T Consensus       463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lE  515 (564)
T KOG1174|consen  463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLE  515 (564)
T ss_pred             HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHH
Confidence            88888884 467888888888888888888888766543                          355667777788777


Q ss_pred             HHHH
Q 007998          484 FKIK  487 (582)
Q Consensus       484 ~~m~  487 (582)
                      +.|+
T Consensus       516 K~~~  519 (564)
T KOG1174|consen  516 KSDD  519 (564)
T ss_pred             hccC
Confidence            7766

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=2.1e-05  Score=78.55  Aligned_cols=395  Identities=14%  Similarity=0.077  Sum_probs=211.5

Q ss_pred             cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCCCCChhHHHH--HHHHH--HcCCCchH
Q 007998           17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQINAPSTNDFNA--VLRGL--AHSSKPTN   91 (582)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~--li~~~--~~~g~~~~   91 (582)
                      ++.+.+.+.-..++..+ +.+  ++..   -.=+-+..+ +.+++|+.+.+.-+.-  .+++.  +=.+|  -+.+..++
T Consensus        26 ~e~e~a~k~~~Kil~~~-pdd--~~a~---~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~De   97 (652)
T KOG2376|consen   26 GEYEEAVKTANKILSIV-PDD--EDAI---RCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDE   97 (652)
T ss_pred             hHHHHHHHHHHHHHhcC-CCc--HhhH---hhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHH
Confidence            45777777777777665 222  2222   233333445 8888888666544321  12222  23344  36678888


Q ss_pred             HHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 007998           92 AVLWYRQMLRGSHRSDA-LTCSFALKACARVLALFETLQIHSHVLRHGFLA-DALLGTTLLDVYAKVGEIVSAKKVFDEM  169 (582)
Q Consensus        92 A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~m  169 (582)
                      |+..+.     |..++. .+...-.+.|-+.+++++|..+|+.+.+.+.+. +...-..++.+-.    .-.+. +.+..
T Consensus        98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v  167 (652)
T KOG2376|consen   98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSV  167 (652)
T ss_pred             HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhc
Confidence            888877     233333 355555667778889999999998887775321 1111112211110    01111 22223


Q ss_pred             CCCChhH---HHHHHHHHHhCCChhHHHHHHHHHHHc-------CCCC-----CCHH-HHHHHHHHHhccCCcHHHHHHH
Q 007998          170 GVRDIAS---WNALIAGLAQGNLASEAVDLFKRMKME-------GVFK-----PNEV-TVLGALAACGHLGAWKEGDKIH  233 (582)
Q Consensus       170 ~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~-----pd~~-t~~~ll~a~~~~~~~~~a~~~~  233 (582)
                      +.....+   +......+...|++.+|++++......       +-..     .+.. .-.-+.-++...|+-++|.+++
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            2221212   222234455666677776666665211       1000     0000 1112223344566666666666


Q ss_pred             HHHHHcCCCCc---hhHHHHHH-----------------------------------------------HHHHhcCCHHH
Q 007998          234 EYIREERLDMN---VVVCNAVI-----------------------------------------------DMYAKCGLLDK  263 (582)
Q Consensus       234 ~~~~~~~~~~~---~~~~~~li-----------------------------------------------~~y~~~g~~~~  263 (582)
                      ..+++......   ...-|.|+                                               .+|.  +..+.
T Consensus       248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q  325 (652)
T KOG2376|consen  248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQ  325 (652)
T ss_pred             HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHH
Confidence            66665542211   11112222                                               2221  22233


Q ss_pred             HHHHHhccc-CCCCHHHHHHHHHH-H-HhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHH--
Q 007998          264 AFEVFDNIK-CRKSLVTWNTMVMA-F-AVHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVRLFN--  336 (582)
Q Consensus       264 A~~~~~~~~-~~~~~~~~~~li~~-~-~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~--  336 (582)
                      ++++-...+ ..|. ..+.+++.. + .+.....+|.+++...-+.  .|+.  ......+......|+++.|.+++.  
T Consensus       326 ~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~  402 (652)
T KOG2376|consen  326 VRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLF  402 (652)
T ss_pred             HHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            333333333 1122 223333332 2 2223466777777766553  3444  344445556678999999999999  


Q ss_pred             ------HHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 007998          337 ------SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--------SMGT-DMVLWQTLLGACQLYGDVEMAEIA  401 (582)
Q Consensus       337 ------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~  401 (582)
                            .+.+.+..|.  +...++.+|.+.+..+-|-.++.+.        .-.+ -..+|.-+...-.++|+-++|..+
T Consensus       403 ~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~  480 (652)
T KOG2376|consen  403 LESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL  480 (652)
T ss_pred             hhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence                  5554333444  4456788888888766666665543        2222 123344444555678999999999


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 007998          402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK  437 (582)
Q Consensus       402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  437 (582)
                      ++++.+.+|++..+...+..+|++.. .+.|..+-+
T Consensus       481 leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k  515 (652)
T KOG2376|consen  481 LEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK  515 (652)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence            99999999999999999999998763 455555443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.99  E-value=1.5e-05  Score=80.39  Aligned_cols=388  Identities=10%  Similarity=0.011  Sum_probs=243.1

Q ss_pred             CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 007998           56 NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD-ALTCSFALKACARVLALFETLQIH  131 (582)
Q Consensus        56 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~  131 (582)
                      |+.++|......-.   .++.+.|..+.-.+-...++++|+..|+..+..  .|| ...+.-+.-.-++.++++.....-
T Consensus        55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr  132 (700)
T KOG1156|consen   55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETR  132 (700)
T ss_pred             cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            88899888776544   356788999988888889999999999999875  344 455665555556778888777777


Q ss_pred             HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHH------HHHHHHhCCChhHHHHHHHHH
Q 007998          132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-----RDIASWNA------LIAGLAQGNLASEAVDLFKRM  200 (582)
Q Consensus       132 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~~~m  200 (582)
                      ...++.. +.....|..++-++--.|+...|..+.++...     ++...+.-      ......++|..++|++.+..-
T Consensus       133 ~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~  211 (700)
T KOG1156|consen  133 NQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN  211 (700)
T ss_pred             HHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence            7776653 33556788888888888888888888776531     33333222      224456788888888887665


Q ss_pred             HHcCCCCCCHHHH-HHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhcccCC-CCH
Q 007998          201 KMEGVFKPNEVTV-LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF-EVFDNIKCR-KSL  277 (582)
Q Consensus       201 ~~~g~~~pd~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~-~~~  277 (582)
                      ...   ..|...+ ..-...+.+.+++++|..++..++.... .+..-|..+..++.+--+.-++. .+|...... |-.
T Consensus       212 e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~  287 (700)
T KOG1156|consen  212 EKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH  287 (700)
T ss_pred             hhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence            433   2344433 3445667788999999999999888742 24444445555665333333333 556554311 110


Q ss_pred             HHHHHHHHHHHhCCC-hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHH----HHHHHhHcCC---------
Q 007998          278 VTWNTMVMAFAVHGD-GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVR----LFNSMANCGV---------  343 (582)
Q Consensus       278 ~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~----~~~~~~~~~~---------  343 (582)
                      ..-..+--...+..+ .+..-.++..+.+.|++|--..+   .+.+-.....+--.+    +...+...|.         
T Consensus       288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl---~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~  364 (700)
T KOG1156|consen  288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL---RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ  364 (700)
T ss_pred             ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh---HHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence            000001011111222 23444566777777776533333   333322222221111    1111111111         


Q ss_pred             -ccChh--hHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHH
Q 007998          344 -KPNMK--HYGSVVDLLGRAGRLQEACDIVKSV-SMGTDM-VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVL  418 (582)
Q Consensus       344 -~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~  418 (582)
                       +|...  ++-.++..|-+.|+++.|+..++.. .-.|+. ..|..-.+.+...|+++.|...++++.+++..|...-.-
T Consensus       365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK  444 (700)
T KOG1156|consen  365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK  444 (700)
T ss_pred             CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence             34443  3446788899999999999999976 555653 345555578889999999999999999998666433335


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHhCCCc-----cCCcccEE
Q 007998          419 LSNLYAAYERWDDVGRVRKAMKNRDVK-----KVPGFSYI  453 (582)
Q Consensus       419 l~~~~~~~g~~~~a~~~~~~m~~~~~~-----~~~~~s~~  453 (582)
                      -+.-..++.+.++|..+.....+.|..     ....|.|.
T Consensus       445 cAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf  484 (700)
T KOG1156|consen  445 CAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWF  484 (700)
T ss_pred             HHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHH
Confidence            566667899999999999888766531     11257775

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.95  E-value=9.3e-08  Score=84.03  Aligned_cols=163  Identities=13%  Similarity=0.073  Sum_probs=131.3

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHH
Q 007998          279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL  357 (582)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  357 (582)
                      +...|..+|.+.|+...|..-+++.++.  .|+. .++..+...|.+.|..+.|.+.|++..... +-+..+.|.....+
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL  113 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence            3455667788888888888888888774  5554 477777778888888888888888888732 23456677777778


Q ss_pred             hhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHH
Q 007998          358 GRAGRLQEACDIVKSVSMGT----DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG  433 (582)
Q Consensus       358 ~~~g~~~~A~~~~~~~~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~  433 (582)
                      |..|++++|...|++.-..|    -..+|..+.-+..+.|+.+.|+..|++.++.+|+.+.+...+.....+.|++-.|.
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence            88889999998888762222    35678888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCC
Q 007998          434 RVRKAMKNRDV  444 (582)
Q Consensus       434 ~~~~~m~~~~~  444 (582)
                      ..+++...++.
T Consensus       194 ~~~~~~~~~~~  204 (250)
T COG3063         194 LYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHhccc
Confidence            99998887664

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.92  E-value=2.8e-05  Score=78.21  Aligned_cols=351  Identities=11%  Similarity=0.143  Sum_probs=209.0

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 007998           75 DFNAVLRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY  153 (582)
Q Consensus        75 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y  153 (582)
                      .|-..+.....+|+.......|+..+.. .+......|...+......+-++-+..+++..++..    +..-+--|.-+
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L  179 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYL  179 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence            5666666666666666666666665543 122233456666666666666666666666666542    22244455566


Q ss_pred             HhcCCHHHHHHHHhhcCCC----------ChhHHHHHHHHHHhCCChh---HHHHHHHHHHHcCCCCCCH--HHHHHHHH
Q 007998          154 AKVGEIVSAKKVFDEMGVR----------DIASWNALIAGLAQGNLAS---EAVDLFKRMKMEGVFKPNE--VTVLGALA  218 (582)
Q Consensus       154 ~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~pd~--~t~~~ll~  218 (582)
                      ++.+++++|.+.+......          +-..|+-+-...+++-+.-   ...++++.+...   -+|.  ..|.++..
T Consensus       180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SLAd  256 (835)
T KOG2047|consen  180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSLAD  256 (835)
T ss_pred             HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHHHH
Confidence            6666666666666655422          2234544444444332221   222333333322   2333  24566666


Q ss_pred             HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc----------------C------CHHHHHHHHhccc----
Q 007998          219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC----------------G------LLDKAFEVFDNIK----  272 (582)
Q Consensus       219 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~----------------g------~~~~A~~~~~~~~----  272 (582)
                      -|.+.|.++.|..++++.+..-  .++.-++.+.+.|+.-                |      +++-...-|+.+.    
T Consensus       257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~  334 (835)
T KOG2047|consen  257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP  334 (835)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence            6666666666666666655431  1222233333333211                1      1222233333321    


Q ss_pred             ----------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHcCCCHHHHHHHHH
Q 007998          273 ----------CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD------VSYLAALCACNHAGLVDDGVRLFN  336 (582)
Q Consensus       273 ----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~~~~  336 (582)
                                .+.++..|..-+..  ..|+..+-+..|.+.... +.|-.      ..|..+...|-..|+++.|+.+|+
T Consensus       335 ~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife  411 (835)
T KOG2047|consen  335 LLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE  411 (835)
T ss_pred             hHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence                      12345556554443  367788888888888764 44432      457788888999999999999999


Q ss_pred             HHhHcCCccC---hhhHHhhhhHHhhcCCHHHHHHHHHhC---CCCC-----------------CHHHHHHHHHHHHhcC
Q 007998          337 SMANCGVKPN---MKHYGSVVDLLGRAGRLQEACDIVKSV---SMGT-----------------DMVLWQTLLGACQLYG  393 (582)
Q Consensus       337 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p-----------------~~~~~~~ll~~~~~~g  393 (582)
                      +..+-..+--   ..+|....++=.+..+++.|+++++..   |..|                 +...|..++..--..|
T Consensus       412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g  491 (835)
T KOG2047|consen  412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG  491 (835)
T ss_pred             HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence            9988333222   456777777778889999999999876   3221                 2346666666667778


Q ss_pred             ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 007998          394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK  437 (582)
Q Consensus       394 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  437 (582)
                      -++.-..++++++++.--.|......+..+....-++++.++++
T Consensus       492 tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE  535 (835)
T KOG2047|consen  492 TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE  535 (835)
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            88899999999999887677777777777777777888888875

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.92  E-value=3.7e-06  Score=84.48  Aligned_cols=256  Identities=8%  Similarity=-0.060  Sum_probs=129.5

Q ss_pred             HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----ccCCcHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHh
Q 007998          183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG----HLGAWKEGDKIHEYIREERLDMN-VVVCNAVIDMYAK  257 (582)
Q Consensus       183 ~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~  257 (582)
                      .+...|++++|.+.+++..+..  |.|...+.. ...+.    ..+....+.+.+..  .....|+ ......+...+..
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~  126 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE  126 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence            3455666666666666665542  333333331 11111    22333333333332  1111222 2333345556666


Q ss_pred             cCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCCH--HHHHHHHHHHHcCCCHHHHH
Q 007998          258 CGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPDD--VSYLAALCACNHAGLVDDGV  332 (582)
Q Consensus       258 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~  332 (582)
                      .|++++|.+.+++..  .+.+...+..+...|...|++++|+..+++...... .|+.  ..|..+...+...|++++|.
T Consensus       127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~  206 (355)
T cd05804         127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL  206 (355)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence            777777776666543  133445566666666677777777777666655321 1222  23344555666677777777


Q ss_pred             HHHHHHhHcCC-ccChhhH-H--hhhhHHhhcCCHHHHHH------HHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007998          333 RLFNSMANCGV-KPNMKHY-G--SVVDLLGRAGRLQEACD------IVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIA  401 (582)
Q Consensus       333 ~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~A~~------~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~  401 (582)
                      .++++...... .+..... +  .++.-+...|....+.+      ..... +.............++...|+.+.|..+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~  286 (355)
T cd05804         207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL  286 (355)
T ss_pred             HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence            77776653111 1111111 1  12222222332222211      11111 1111112223455667788888888888


Q ss_pred             HHHHHHcCC---------CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          402 SRKLVEMGS---------NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       402 ~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ++.+....-         .........+.++...|++++|.+.+.......
T Consensus       287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            888765321         123455667777889999999999988776543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=6.6e-07  Score=88.02  Aligned_cols=367  Identities=13%  Similarity=0.094  Sum_probs=231.6

Q ss_pred             CCHHHHHHHHhcC---CCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcCChHHHHHHH
Q 007998           56 NELAYAHALFRQI---NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA-LTCSFALKACARVLALFETLQIH  131 (582)
Q Consensus        56 g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~  131 (582)
                      |+++.|...|-..   .++|-+.|..-..+|+..|++++|++=-.+-++  +.|+. ..|+..-.+....|++++|+..|
T Consensus        16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay   93 (539)
T KOG0548|consen   16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAY   93 (539)
T ss_pred             ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence            9999999999764   356888899999999999999999887777666  45664 47888888888999999999999


Q ss_pred             HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhh------cC-CC------ChhHHHHHHHHHHhCC-------Chh
Q 007998          132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDE------MG-VR------DIASWNALIAGLAQGN-------LAS  191 (582)
Q Consensus       132 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~------m~-~~------~~~~~~~li~~~~~~g-------~~~  191 (582)
                      ..-++.. +.+...++.|.+++....   .+-+.|..      .. .|      ....|..++..+-++-       +.+
T Consensus        94 ~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~  169 (539)
T KOG0548|consen   94 SEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP  169 (539)
T ss_pred             HHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence            8888875 446677888888872110   11111111      00 00      1123344443322210       111


Q ss_pred             HHHHHHHHHHH--------cCC------CCC------------C----------HHHHHHHHHHHhccCCcHHHHHHHHH
Q 007998          192 EAVDLFKRMKM--------EGV------FKP------------N----------EVTVLGALAACGHLGAWKEGDKIHEY  235 (582)
Q Consensus       192 ~A~~~~~~m~~--------~g~------~~p------------d----------~~t~~~ll~a~~~~~~~~~a~~~~~~  235 (582)
                      ........+..        .|.      ..|            |          ..-...+.++.-+..+++.+.+-+..
T Consensus       170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~  249 (539)
T KOG0548|consen  170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK  249 (539)
T ss_pred             HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            11111111100        000      011            0          11244555666666677777777777


Q ss_pred             HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCH----------HHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998          236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSL----------VTWNTMVMAFAVHGDGPRALELFEQMGR  305 (582)
Q Consensus       236 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (582)
                      .++..  .+..-++....+|...|.+.++...-+... +..-          .....+..+|...++++.|+..|.+...
T Consensus       250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~-E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt  326 (539)
T KOG0548|consen  250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAV-EVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT  326 (539)
T ss_pred             HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHH-HHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence            76654  456666667777777777666555443322 1111          1122244466667778888888877665


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh--hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 007998          306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM--KHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVL  381 (582)
Q Consensus       306 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~  381 (582)
                      ....||..+         +....+++.+..+...-  +.|..  .... =...+.+.|++.+|.+.|.++ ...| |...
T Consensus       327 e~Rt~~~ls---------~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~-kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l  394 (539)
T KOG0548|consen  327 EHRTPDLLS---------KLKEAEKALKEAERKAY--INPEKAEEERE-KGNEAFKKGDYPEAVKHYTEAIKRDPEDARL  394 (539)
T ss_pred             hhcCHHHHH---------HHHHHHHHHHHHHHHHh--hChhHHHHHHH-HHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence            544444322         22233444443333332  22332  1111 145567889999999999876 3345 7888


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       382 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      |....-+|.+.|++..|+.-.+..++++|+....|..-+.++....+|+.|...|++-.+.+
T Consensus       395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999998877665

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.90  E-value=2.9e-05  Score=78.19  Aligned_cols=379  Identities=14%  Similarity=0.125  Sum_probs=210.3

Q ss_pred             CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCC------CCCChhHHHHHHHHHHhcCChHHHHH
Q 007998           56 NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGS------HRSDALTCSFALKACARVLALFETLQ  129 (582)
Q Consensus        56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~a~~  129 (582)
                      |-++-+.+++.+-.+-++..-+..|..++..+++++|-+.+...+...      .+.+...|.-+-...++..+.-....
T Consensus       152 ~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln  231 (835)
T KOG2047|consen  152 GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN  231 (835)
T ss_pred             CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC
Confidence            444455555544333333334455555555555555555555543211      11122233333333333222222111


Q ss_pred             HHHHHHHcCC--CCc--hHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHHHHHHHh----------------C
Q 007998          130 IHSHVLRHGF--LAD--ALLGTTLLDVYAKVGEIVSAKKVFDEMGVR--DIASWNALIAGLAQ----------------G  187 (582)
Q Consensus       130 ~~~~~~~~g~--~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~----------------~  187 (582)
                      + +.+++.|+  -+|  -..|++|.+-|.+.|.++.|..+|++....  .+.-++.+-.+|++                .
T Consensus       232 v-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~  310 (835)
T KOG2047|consen  232 V-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEES  310 (835)
T ss_pred             H-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            1 11222221  223  246778888888888888888888765322  11112222222221                1


Q ss_pred             CC------hhHHHHHHHHHHHcCCC----------CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC------ch
Q 007998          188 NL------ASEAVDLFKRMKMEGVF----------KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM------NV  245 (582)
Q Consensus       188 g~------~~~A~~~~~~m~~~g~~----------~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~------~~  245 (582)
                      |+      .+-.+.-|+.+.+.+..          +-+..+|..-...  ..|+..+-...+.++++. +.|      -.
T Consensus       311 ~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~  387 (835)
T KOG2047|consen  311 GNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPG  387 (835)
T ss_pred             cChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChh
Confidence            11      12223333333322110          2222333333322  235566666677776654 222      24


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhcccCC--CC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCC----------
Q 007998          246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCR--KS----LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK----------  309 (582)
Q Consensus       246 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----------  309 (582)
                      ..|..+.+.|-..|+++.|+.+|++....  +.    ..+|......=.++.+++.|+++.++.....-.          
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            57788999999999999999999977511  22    346777777778899999999999887542111          


Q ss_pred             C-------CHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CC--CCC
Q 007998          310 P-------DDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SM--GTD  378 (582)
Q Consensus       310 p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~--~p~  378 (582)
                      |       +...|...++.-...|-++....+|+++.. .=..|....  .....+-....++++.+++++- ++  .|+
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~  545 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPN  545 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence            1       112344455555567888999999999998 433454322  1222344566789999999875 32  233


Q ss_pred             -HHHHHHHHHHHH-hc--CChHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          379 -MVLWQTLLGACQ-LY--GDVEMAEIASRKLVEMGSNNC--GDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       379 -~~~~~~ll~~~~-~~--g~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                       ...|++.+.-+. +.  ..++.|..+|+++++.-|+..  ..|...+..-.+-|....|..++++.-
T Consensus       546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             457888876553 22  378999999999999877432  244455555556788888888888753

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.88  E-value=5.8e-06  Score=85.08  Aligned_cols=68  Identities=10%  Similarity=-0.035  Sum_probs=32.5

Q ss_pred             HHcCCCchHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 007998           83 LAHSSKPTNAVLWYRQMLRGSHRSDAL-TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVY  153 (582)
Q Consensus        83 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y  153 (582)
                      +...|++++|++.+..-...  -+|.. ........+.+.|+.++|..++..+++.++ .|..-|..|..+.
T Consensus        14 l~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~   82 (517)
T PF12569_consen   14 LEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEAL   82 (517)
T ss_pred             HHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHH
Confidence            34555666666655543322  22332 333444555555666666666666655542 2333344444443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.87  E-value=1.9e-05  Score=79.62  Aligned_cols=387  Identities=12%  Similarity=0.071  Sum_probs=249.9

Q ss_pred             HHHhcCCC----CCHHHHHHHHhcCCC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 007998           48 EFYALSPL----NELAYAHALFRQINA-PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL  122 (582)
Q Consensus        48 ~li~~y~~----g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  122 (582)
                      .++..|-.    ..+.-+.+++..-|+ ++..+  ...-.+...|+-++|.+..+.-.+..++ +.+.|..+.-.+....
T Consensus        13 ~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslA--mkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK   89 (700)
T KOG1156|consen   13 RALKCYETKQYKKGLKLIKQILKKFPEHGESLA--MKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDK   89 (700)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhCCccchhHH--hccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhh
Confidence            45555554    344555555554442 33332  2222344568889999888877765443 5566666666666778


Q ss_pred             ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHH
Q 007998          123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKR  199 (582)
Q Consensus       123 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~  199 (582)
                      ++++|.+.|..+++.+ +.|..++.-|.-.-++.|+++.....-.+..   ...-..|..+..++.-.|++..|..+.++
T Consensus        90 ~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e  168 (700)
T KOG1156|consen   90 KYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE  168 (700)
T ss_pred             hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999886 4467788777777777888877666555443   33567899999999999999999999999


Q ss_pred             HHHcCCCCCCHHHHHHHHH------HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-
Q 007998          200 MKMEGVFKPNEVTVLGALA------ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-  272 (582)
Q Consensus       200 m~~~g~~~pd~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-  272 (582)
                      ..+.....|+...|.-...      .....|..+.|.+........ +......-..-.+.+.+.+++++|..++..+. 
T Consensus       169 f~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~  247 (700)
T KOG1156|consen  169 FEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE  247 (700)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence            8876522577666544433      345667777777766554433 22234444566788999999999999999876 


Q ss_pred             CCCCHHHHHHHH-HHHHhCCChhHHH-HHHHHHHhcCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHhHcCCccChhh
Q 007998          273 CRKSLVTWNTMV-MAFAVHGDGPRAL-ELFEQMGRAGVKPDDVSYLA-ALCACNHAGLVDDGVRLFNSMANCGVKPNMKH  349 (582)
Q Consensus       273 ~~~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~  349 (582)
                      ..||...|.-.. .++..-.+.-+++ .+|....+.  .|-...-.. -++......-.+....++..+.+.|+++-.. 
T Consensus       248 rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~-  324 (700)
T KOG1156|consen  248 RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK-  324 (700)
T ss_pred             hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh-
Confidence            356666665544 4443333333444 666665543  222211111 1111222233444556667777777665332 


Q ss_pred             HHhhhhHHhhcCCHH---H-HHHHHHhC-C------------CCCCHHHHHH--HHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998          350 YGSVVDLLGRAGRLQ---E-ACDIVKSV-S------------MGTDMVLWQT--LLGACQLYGDVEMAEIASRKLVEMGS  410 (582)
Q Consensus       350 ~~~li~~~~~~g~~~---~-A~~~~~~~-~------------~~p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~p  410 (582)
                        .+...|-.-...+   + +..+...+ +            ..|....|..  ++..+-..|+++.|+...+.++...|
T Consensus       325 --dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP  402 (700)
T KOG1156|consen  325 --DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP  402 (700)
T ss_pred             --hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc
Confidence              3333332211111   1 11222222 1            2467777765  45667889999999999999999999


Q ss_pred             CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       411 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      .-+..|..-+.++...|..++|...+++.++.+.
T Consensus       403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~  436 (700)
T KOG1156|consen  403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT  436 (700)
T ss_pred             hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence            8888899999999999999999999999887654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.86  E-value=3.7e-08  Score=94.17  Aligned_cols=244  Identities=13%  Similarity=0.039  Sum_probs=132.1

Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007998          184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK  263 (582)
Q Consensus       184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~  263 (582)
                      +.-.|++..++.-.+ ...... +.+......+.+++..+|+.+.+   ..++.+.. .|.......+...+...++-+.
T Consensus        11 ~fy~G~Y~~~i~e~~-~~~~~~-~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LKSFSP-ENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CHTSTC-HHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHhhhHHHHHHHhh-ccCCCc-hhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence            344566666665444 211111 11223444455566666654432   22232222 4444444444443333334444


Q ss_pred             HHHHHhcccCCC---CHHHHHH-HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 007998          264 AFEVFDNIKCRK---SLVTWNT-MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA  339 (582)
Q Consensus       264 A~~~~~~~~~~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~  339 (582)
                      +..-++.....+   +..++.. ....+...|++++|++++.+-      .+.......+..+.+.++++.|.+.++.|.
T Consensus        85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen   85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444443322011   1112222 223345567777777766542      244555566677777778888887777776


Q ss_pred             HcCCccChhh---HHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998          340 NCGVKPNMKH---YGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG  414 (582)
Q Consensus       340 ~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  414 (582)
                      +.  ..|...   ..+.+..+.-.+.+.+|..+|+++  ...+++.+.+.+..+....|++++|+.+++++++.+|.++.
T Consensus       159 ~~--~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d  236 (290)
T PF04733_consen  159 QI--DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD  236 (290)
T ss_dssp             CC--SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred             hc--CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence            52  233221   222333333344678888888877  33457777788888888888888888888888888888888


Q ss_pred             hHHHHHHHHHhcCCc-hHHHHHHHHHHh
Q 007998          415 DFVLLSNLYAAYERW-DDVGRVRKAMKN  441 (582)
Q Consensus       415 ~~~~l~~~~~~~g~~-~~a~~~~~~m~~  441 (582)
                      +...++.+....|+. +.+.+.+..++.
T Consensus       237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  237 TLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            888888888888877 556667776664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.86  E-value=1.5e-06  Score=76.61  Aligned_cols=200  Identities=13%  Similarity=-0.003  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007998          177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA  256 (582)
Q Consensus       177 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~  256 (582)
                      ..-|.-+|.+.|++..|.+-+++.++..  +.+..++..+...|.+.|..+.|.+.|+..++..                
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~----------------   99 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA----------------   99 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC----------------
Confidence            3344445555555555555555555543  3344445555555555555555555555544443                


Q ss_pred             hcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHH
Q 007998          257 KCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLF  335 (582)
Q Consensus       257 ~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~  335 (582)
                                       +.+-...|....-++..|++++|...|++....-.-|. ..||..+.-+..+.|+.+.|..+|
T Consensus       100 -----------------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l  162 (250)
T COG3063         100 -----------------PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL  162 (250)
T ss_pred             -----------------CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence                             22333444444444444445555555544444221111 124444444444555555555555


Q ss_pred             HHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       336 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      ++..+.. +-.......+.+.....|++-.|..+++..  ...++..+..-.|..-...||-+.+-+.=.++.+.-|..
T Consensus       163 ~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s  240 (250)
T COG3063         163 KRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS  240 (250)
T ss_pred             HHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence            5555421 111223334445555555555555555544  223455555555555555666666555555555555543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.85  E-value=7.9e-08  Score=95.15  Aligned_cols=217  Identities=12%  Similarity=0.053  Sum_probs=145.1

Q ss_pred             ccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHH
Q 007998          222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALEL  299 (582)
Q Consensus       222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~  299 (582)
                      +.|++.+|.-.|+..++..+. +...|--|.......++-..|+..+.+..  .+.|....-+|...|...|.-.+|+..
T Consensus       297 ~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~  375 (579)
T KOG1125|consen  297 KNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM  375 (579)
T ss_pred             hcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence            445555555555555554322 45555555555555555555555554432  133444555555555555655566665


Q ss_pred             HHHHHhcCCC--------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHH
Q 007998          300 FEQMGRAGVK--------PDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIV  370 (582)
Q Consensus       300 ~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  370 (582)
                      ++.-+....+        ++..+-..  ..+.....+....++|-.+.. .+..+|..++.+|.-+|.-.|.+++|.+.|
T Consensus       376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf  453 (579)
T KOG1125|consen  376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF  453 (579)
T ss_pred             HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence            5554432100        00000000  111112223344556666665 665688888899999999999999999999


Q ss_pred             HhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          371 KSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       371 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      +.. .++| |...||-|...+....+.++|+..|++++++.|.-..+...|+..|...|.+++|.+.|-....
T Consensus       454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            986 7777 7899999999999999999999999999999999999999999999999999999998876653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.84  E-value=1.9e-05  Score=79.36  Aligned_cols=197  Identities=14%  Similarity=0.007  Sum_probs=115.3

Q ss_pred             hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCC-CCChhHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHH--
Q 007998           73 TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCS-FALKACARVLALFETLQIHSHVLRHGFLADALLGTT--  148 (582)
Q Consensus        73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--  148 (582)
                      ...|..+...+...|+++.+...+....+... .++..... .....+...|++++|.+.++.+++.. +.|...+..  
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~   84 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL   84 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence            34566666667677777777666666554322 22222121 11223456788888888888887764 334333331  


Q ss_pred             -HHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 007998          149 -LLDVYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG  224 (582)
Q Consensus       149 -li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~  224 (582)
                       ........+..+.+.+.++.....   ....+..+...+...|++++|.+.+++..+..  +.+...+..+..++...|
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g  162 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcC
Confidence             222222345555555555543222   22333445566777888888888888877764  455566667777777777


Q ss_pred             CcHHHHHHHHHHHHcCCC-Cch--hHHHHHHHHHHhcCCHHHHHHHHhccc
Q 007998          225 AWKEGDKIHEYIREERLD-MNV--VVCNAVIDMYAKCGLLDKAFEVFDNIK  272 (582)
Q Consensus       225 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~  272 (582)
                      ++++|...+++..+.... ++.  ..+..+...+...|++++|..+|++..
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            777777777776654321 222  234456667777777777777777653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.83  E-value=1e-05  Score=75.25  Aligned_cols=311  Identities=14%  Similarity=0.095  Sum_probs=154.4

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHH---HHHHHhcCChHHHHHHHHHHHHcCCCCchHH-HHHHHHHH
Q 007998           78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFA---LKACARVLALFETLQIHSHVLRHGFLADALL-GTTLLDVY  153 (582)
Q Consensus        78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y  153 (582)
                      .+...+.-+|++.+|+.-|....+.    |+..|..+   ...|...|+...|.+=+..+++.  .||-.. ...-...+
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence            3444455556666666666666442    22223332   33455566666666666666554  333211 11122445


Q ss_pred             HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHH
Q 007998          154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH  233 (582)
Q Consensus       154 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~  233 (582)
                      .+.|.++.|..=|+.+...+..           +|...+|.+-+....+.       ......+..+...|+...+....
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e~-------~~l~~ql~s~~~~GD~~~ai~~i  178 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQEH-------WVLVQQLKSASGSGDCQNAIEMI  178 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHHH-------HHHHHHHHHHhcCCchhhHHHHH
Confidence            5666666666666655322110           00000110000000000       01111222223334444444444


Q ss_pred             HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC
Q 007998          234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD  311 (582)
Q Consensus       234 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  311 (582)
                      ..+++.. +-|...+..-..+|...|++..|+.-+....  ...+..+.--+-..+...|+.+.++...++-++  +.||
T Consensus       179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpd  255 (504)
T KOG0624|consen  179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPD  255 (504)
T ss_pred             HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcc
Confidence            4444432 2244444444455555555555544333222  133344444444444455555555555554443  3444


Q ss_pred             HHH----HHHH---------HHHHHcCCCHHHHHHHHHHHhHcCCcc---ChhhHHhhhhHHhhcCCHHHHHHHHHhC-C
Q 007998          312 DVS----YLAA---------LCACNHAGLVDDGVRLFNSMANCGVKP---NMKHYGSVVDLLGRAGRLQEACDIVKSV-S  374 (582)
Q Consensus       312 ~~t----~~~l---------l~a~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~-~  374 (582)
                      ...    |-.+         +......++|.++..-.+...+.....   ....+..+-.+|...|++.+|+....+. .
T Consensus       256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~  335 (504)
T KOG0624|consen  256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD  335 (504)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence            421    1100         112234566666666666666633221   1233445566777788888988887765 5


Q ss_pred             CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998          375 MGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       375 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  415 (582)
                      +.|| +.++..-..+|.....++.|+.-|+++.+.++++..+
T Consensus       336 ~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~  377 (504)
T KOG0624|consen  336 IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA  377 (504)
T ss_pred             cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence            5664 7788888888888888999999999999988877543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.81  E-value=4.9e-06  Score=85.62  Aligned_cols=173  Identities=13%  Similarity=0.085  Sum_probs=84.2

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 007998          317 AALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYG  393 (582)
Q Consensus       317 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g  393 (582)
                      .+...|.+.|++++|..+.++.+++  .|+ ++.|..-...|-+.|++++|.+.++.. ...+ |...-+-....+.+.|
T Consensus       199 ~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~  276 (517)
T PF12569_consen  199 FLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG  276 (517)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence            3344455566666666666666553  233 455555556666666666666665554 2222 3333334444555666


Q ss_pred             ChHHHHHHHHHHHHcC--CCC-------chhHHHHHHHHHhcCCchHHHHHHHHHHhC--CCccCC--cccEEEECCEEE
Q 007998          394 DVEMAEIASRKLVEMG--SNN-------CGDFVLLSNLYAAYERWDDVGRVRKAMKNR--DVKKVP--GFSYIEVGGVIH  460 (582)
Q Consensus       394 ~~~~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~--~~s~~~~~~~~~  460 (582)
                      ++++|.+++....+.+  |..       .-.....+.+|.+.|++..|++-|..+.+.  .+..+.  -.+|..-.+.+.
T Consensus       277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r  356 (517)
T PF12569_consen  277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLR  356 (517)
T ss_pred             CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHH
Confidence            6666666665554433  110       111234566677777766666655444321  010000  001110000000


Q ss_pred             EE------EeCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 007998          461 KF------FTSDKSHVKWREIYEKLDEIMFKIKEYGY  491 (582)
Q Consensus       461 ~~------~~~~~~~~~~~~~~~~l~~l~~~m~~~g~  491 (582)
                      .+      --...+||..-.+....-++.-.+.+.+.
T Consensus       357 ~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~  393 (517)
T PF12569_consen  357 AYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPE  393 (517)
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcc
Confidence            00      01125678877777777677767666543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.76  E-value=1.7e-05  Score=90.28  Aligned_cols=323  Identities=13%  Similarity=0.009  Sum_probs=206.0

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CC----C--h--hHHHHHHHHHHhC
Q 007998          120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG----VR----D--I--ASWNALIAGLAQG  187 (582)
Q Consensus       120 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~----~~----~--~--~~~~~li~~~~~~  187 (582)
                      ..|+++.+...++.+.......++.........+...|++++|...+....    ..    +  .  .....+...+...
T Consensus       386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  465 (903)
T PRK04841        386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND  465 (903)
T ss_pred             hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence            446666555555443111111122333445556678899999888887542    11    1  1  1122233456689


Q ss_pred             CChhHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCCcHHHHHHHHHHHHcCC---CC--chhHHHHHHHHHHhc
Q 007998          188 NLASEAVDLFKRMKMEGVFKPNE----VTVLGALAACGHLGAWKEGDKIHEYIREERL---DM--NVVVCNAVIDMYAKC  258 (582)
Q Consensus       188 g~~~~A~~~~~~m~~~g~~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~y~~~  258 (582)
                      |++++|...+++....-. ..+.    .+...+...+...|++++|...+.+.....-   .+  .......+...+...
T Consensus       466 g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~  544 (903)
T PRK04841        466 GDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ  544 (903)
T ss_pred             CCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence            999999999998876421 2222    2345556667789999999999988774311   11  134556677788899


Q ss_pred             CCHHHHHHHHhccc------CCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHhc--CCCCC--HHHHHHHHHHHHc
Q 007998          259 GLLDKAFEVFDNIK------CRK----SLVTWNTMVMAFAVHGDGPRALELFEQMGRA--GVKPD--DVSYLAALCACNH  324 (582)
Q Consensus       259 g~~~~A~~~~~~~~------~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~~  324 (582)
                      |++++|...+++..      ..+    ....+..+...+...|++++|...+++....  ...|.  ...+..+......
T Consensus       545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  624 (903)
T PRK04841        545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA  624 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence            99999999887643      011    1233455666677789999999999887552  11222  2344445667778


Q ss_pred             CCCHHHHHHHHHHHhHc-CCccChhhH-----HhhhhHHhhcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHhc
Q 007998          325 AGLVDDGVRLFNSMANC-GVKPNMKHY-----GSVVDLLGRAGRLQEACDIVKSVSM-G-TDM----VLWQTLLGACQLY  392 (582)
Q Consensus       325 ~g~~~~a~~~~~~~~~~-~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~----~~~~~ll~~~~~~  392 (582)
                      .|+.+.|...+...... .-......+     ......+...|+.+.|.+.+..... . ...    ..+..+..++...
T Consensus       625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~  704 (903)
T PRK04841        625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL  704 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence            99999999999888651 111111111     1122445568999999999876621 1 111    1234566778889


Q ss_pred             CChHHHHHHHHHHHHcCC------CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          393 GDVEMAEIASRKLVEMGS------NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       393 g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      |+.++|...++++.....      ....++..++.+|...|+.++|...+.+..+..
T Consensus       705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999887531      123467788999999999999999999887643

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=3.1e-05  Score=81.54  Aligned_cols=370  Identities=11%  Similarity=0.096  Sum_probs=203.7

Q ss_pred             hhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC-CCChhH-----HHHHHHHHHcCCCchH
Q 007998           19 HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN-APSTND-----FNAVLRGLAHSSKPTN   91 (582)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~-~~~~~~-----~~~li~~~~~~g~~~~   91 (582)
                      ...-||+..+++.+++....+|.-.   ..-+.++.. +-..+-.++++++. .+++++     -|.||-...+ .+...
T Consensus       963 n~~rRqLiDqVv~tal~E~~dPe~v---S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~tr 1038 (1666)
T KOG0985|consen  963 NPYRRQLIDQVVQTALPETQDPEEV---SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTR 1038 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCccCChHHH---HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHH
Confidence            3455666777777666433224332   245555555 66666666666654 333332     2333332222 23445


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007998           92 AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV  171 (582)
Q Consensus        92 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~  171 (582)
                      .++..+++-..+       -..+...+...+-+++|..+|...     ..+....+.||.   .-+.++.|.+.-++..+
T Consensus      1039 Vm~YI~rLdnyD-------a~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~ 1103 (1666)
T KOG0985|consen 1039 VMEYINRLDNYD-------APDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE 1103 (1666)
T ss_pred             HHHHHHHhccCC-------chhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC
Confidence            555555553321       112233344445556666665542     233333344433   34566777766666555


Q ss_pred             CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998          172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV  251 (582)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  251 (582)
                      |  ..|..+..+-.+.|...+|++-|-+.       .|+..|..++.++.+.|.+++-.+++.-..+..-+|.  +-+.|
T Consensus      1104 p--~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eL 1172 (1666)
T KOG0985|consen 1104 P--AVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSEL 1172 (1666)
T ss_pred             h--HHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHH
Confidence            4  56888888888999999988877433       4667888999999999999998888877776655544  34578


Q ss_pred             HHHHHhcCCHHHHHHHHhcccCCCCHHH--------------------------HHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998          252 IDMYAKCGLLDKAFEVFDNIKCRKSLVT--------------------------WNTMVMAFAVHGDGPRALELFEQMGR  305 (582)
Q Consensus       252 i~~y~~~g~~~~A~~~~~~~~~~~~~~~--------------------------~~~li~~~~~~g~~~~A~~~~~~m~~  305 (582)
                      +-+|++.+++.+-++++.    -||+.-                          |..|...+...|++..|...-++.  
T Consensus      1173 i~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA-- 1246 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA-- 1246 (1666)
T ss_pred             HHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence            888999998888776653    233333                          444444444445554444433332  


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 007998          306 AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQ  383 (582)
Q Consensus       306 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  383 (582)
                          .+..||..+-.+|...+.+..|     +|...++.....-..-|+.-|-..|.+++-..+++.. +.+. ....|.
T Consensus      1247 ----ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfT 1317 (1666)
T KOG0985|consen 1247 ----NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFT 1317 (1666)
T ss_pred             ----cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHH
Confidence                2344565555566554444322     1222222233444555667777777777777777654 4332 444555


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998          384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM  439 (582)
Q Consensus       384 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  439 (582)
                      -|.-.|.+. ++++..+.++-....-     ..--++.++..+--|.+..-++.+-
T Consensus      1318 ELaiLYsky-kp~km~EHl~LFwsRv-----NipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1318 ELAILYSKY-KPEKMMEHLKLFWSRV-----NIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred             HHHHHHHhc-CHHHHHHHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555555554 3444444443332211     1113455555556666665555443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.73  E-value=8.7e-06  Score=74.27  Aligned_cols=379  Identities=12%  Similarity=0.025  Sum_probs=233.8

Q ss_pred             HHHhcCCC-CCHHHHHHHHhcCCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHH-HHHHHHhcC
Q 007998           48 EFYALSPL-NELAYAHALFRQINA---PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSF-ALKACARVL  122 (582)
Q Consensus        48 ~li~~y~~-g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~  122 (582)
                      +.+.-+.+ .++++|.+++..-.+   ++....+.|...|-...++..|-..++++-..  .|...-|.. -.+.+-+.+
T Consensus        15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~   92 (459)
T KOG4340|consen   15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC   92 (459)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence            44444456 788999988876543   36667788888889999999999999999764  344333322 123445667


Q ss_pred             ChHHHHHHHHHHHHcCCCCchHHHHHHH----HHHHhcCCHHHHHHHHhhcC-CCChhHHHHHHHHHHhCCChhHHHHHH
Q 007998          123 ALFETLQIHSHVLRHGFLADALLGTTLL----DVYAKVGEIVSAKKVFDEMG-VRDIASWNALIAGLAQGNLASEAVDLF  197 (582)
Q Consensus       123 ~~~~a~~~~~~~~~~g~~~~~~~~~~li----~~y~~~g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~~~  197 (582)
                      .+..|..+...|...     ....+..+    ......+|+..++.+.++.+ +.+..+.+.......+.|+++.|++-|
T Consensus        93 i~ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF  167 (459)
T KOG4340|consen   93 IYADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF  167 (459)
T ss_pred             ccHHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence            788888887776432     12222222    22335789999999999998 466777777777778999999999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC-------------ch---------------hHHH
Q 007998          198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-------------NV---------------VVCN  249 (582)
Q Consensus       198 ~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~~  249 (582)
                      +...+-+- -.....|+..+.. .+.++...|.+...++++.|+..             |+               ..+|
T Consensus       168 qaAlqvsG-yqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN  245 (459)
T KOG4340|consen  168 QAALQVSG-YQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN  245 (459)
T ss_pred             HHHHhhcC-CCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence            99887654 3345667665544 46789999999999999876431             11               1222


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccc----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 007998          250 AVIDMYAKCGLLDKAFEVFDNIK----CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA  325 (582)
Q Consensus       250 ~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  325 (582)
                      .-...+.+.|+++.|.+.+-.|+    .+.|++|...+.-.- ..+++.+..+-+.-+..... --..||..++-.|++.
T Consensus       246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN  323 (459)
T KOG4340|consen  246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN  323 (459)
T ss_pred             hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence            23345678899999999999997    234667765553322 24455555555555554422 2346888888899998


Q ss_pred             CCHHHHHHHHHHHhHcCCc-cChhhHHhhhhHHh-hcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC---hHHH
Q 007998          326 GLVDDGVRLFNSMANCGVK-PNMKHYGSVVDLLG-RAGRLQEACDIVKSVSMGTD--MVLWQTLLGACQLYGD---VEMA  398 (582)
Q Consensus       326 g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~---~~~a  398 (582)
                      .-++.|-.++.+-...-.. .+...|+ |++++. ..-..++|++-++.+...-.  ......-+.--+..++   ...+
T Consensus       324 eyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~a  402 (459)
T KOG4340|consen  324 EYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKA  402 (459)
T ss_pred             HHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            8888888877543321111 2333444 333333 33456666665554310000  0000000111111111   1223


Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      .+-+++.+++-   ..+.+.-+..|.+..++..+.++|..-.+
T Consensus       403 i~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  403 VNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence            33344444432   23556777888899999999999876554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.73  E-value=6.7e-06  Score=86.47  Aligned_cols=410  Identities=12%  Similarity=0.048  Sum_probs=228.0

Q ss_pred             HHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHH
Q 007998           21 HIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWY   96 (582)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~   96 (582)
                      ....+|..+....+  |  +..+..|..|...|.. -++..|.+.|+..-   ..|..+|......|++..+++.|..+.
T Consensus       474 ~~~al~ali~alrl--d--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  474 SALALHALIRALRL--D--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             HHHHHHHHHHHHhc--c--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence            34455655544443  3  4444456788888877 88889999998865   357778999999999999999999883


Q ss_pred             HHHHhCC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh
Q 007998           97 RQMLRGS-HRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA  175 (582)
Q Consensus        97 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~  175 (582)
                      -..-+.. ...-...|..+--.+...++...+..-++..++.. +.|...|..|..+|.++|+...|.++|++...-++.
T Consensus       550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL  628 (1238)
T ss_pred             HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence            3322211 11112234444445667788889999899888876 448889999999999999999999999888654443


Q ss_pred             HHHH---HHHHHHhCCChhHHHHHHHHHHHcC------CCCCCHHHHHHHHHHHhccCCcHHHHHHHHH-------HHHc
Q 007998          176 SWNA---LIAGLAQGNLASEAVDLFKRMKMEG------VFKPNEVTVLGALAACGHLGAWKEGDKIHEY-------IREE  239 (582)
Q Consensus       176 ~~~~---li~~~~~~g~~~~A~~~~~~m~~~g------~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~-------~~~~  239 (582)
                      +|..   ....-+..|.+++|+..+.......      . .--..++..+...+...|-...+..+++.       ....
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q-~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h  707 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQ-NGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH  707 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            3322   1223456788999888887765421      1 11122333333333333322222222222       2111


Q ss_pred             CCCCchhHHHHH-------------------HHHHHh----cCCH---H---HHHHHHhc-ccCCCCHHHHHHHHHHHHh
Q 007998          240 RLDMNVVVCNAV-------------------IDMYAK----CGLL---D---KAFEVFDN-IKCRKSLVTWNTMVMAFAV  289 (582)
Q Consensus       240 ~~~~~~~~~~~l-------------------i~~y~~----~g~~---~---~A~~~~~~-~~~~~~~~~~~~li~~~~~  289 (582)
                      ....+...|-.+                   +..+.+    .+..   +   -+.+.+-. +....+..+|..++..|.+
T Consensus       708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr  787 (1238)
T KOG1127|consen  708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR  787 (1238)
T ss_pred             hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence            111111111111                   111111    1111   1   00000000 0001123445555444433


Q ss_pred             ----C----CChhHHHHHHHHHHhcCCCCCHHHHHH---------------------------------HHHHHHcCCCH
Q 007998          290 ----H----GDGPRALELFEQMGRAGVKPDDVSYLA---------------------------------ALCACNHAGLV  328 (582)
Q Consensus       290 ----~----g~~~~A~~~~~~m~~~g~~p~~~t~~~---------------------------------ll~a~~~~g~~  328 (582)
                          .    .+...|+..+.+.++.. .-+..+|+.                                 +.-.|....++
T Consensus       788 ~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~  866 (1238)
T KOG1127|consen  788 YFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDF  866 (1238)
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccH
Confidence                1    12234555555544321 112333333                                 33334445666


Q ss_pred             HHHHHHHHHHhHcCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007998          329 DDGVRLFNSMANCGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGTDMVLWQTLLGACQLYGDVEMAEI  400 (582)
Q Consensus       329 ~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~  400 (582)
                      +.|...|.....  +.| +...|-.........|+.-++..+|..-       +--|+...|.....-...+|+.++-+.
T Consensus       867 E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~  944 (1238)
T KOG1127|consen  867 EHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN  944 (1238)
T ss_pred             HHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence            667666666654  223 3344443333444566666776666531       223455566555555556666655444


Q ss_pred             H----------HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998          401 A----------SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM  439 (582)
Q Consensus       401 ~----------~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  439 (582)
                      .          .++.....|+...+|...+....+.+.+.+|.....+.
T Consensus       945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl  993 (1238)
T KOG1127|consen  945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL  993 (1238)
T ss_pred             HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4          44445567888899999999999999988888776654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.71  E-value=5.9e-05  Score=85.95  Aligned_cols=356  Identities=8%  Similarity=-0.076  Sum_probs=219.7

Q ss_pred             CCHHHHHHHHhcCCCCChhH--HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 007998           56 NELAYAHALFRQINAPSTND--FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSH  133 (582)
Q Consensus        56 g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  133 (582)
                      |++.+|..........+...  ...........|++..+...+..+.......+..........+...|+++++...+..
T Consensus       355 g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~  434 (903)
T PRK04841        355 GFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLAR  434 (903)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55555555555444332211  1112223445677777777766653221111222233344455677899999998887


Q ss_pred             HHHcCC------CCc--hHHHHHHHHHHHhcCCHHHHHHHHhhcCC----CCh----hHHHHHHHHHHhCCChhHHHHHH
Q 007998          134 VLRHGF------LAD--ALLGTTLLDVYAKVGEIVSAKKVFDEMGV----RDI----ASWNALIAGLAQGNLASEAVDLF  197 (582)
Q Consensus       134 ~~~~g~------~~~--~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~  197 (582)
                      +...--      .+.  ......+...+...|++++|...+++...    .+.    ..++.+...+...|++++|...+
T Consensus       435 a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~  514 (903)
T PRK04841        435 AEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMM  514 (903)
T ss_pred             HHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            765311      111  12223344566789999999998877532    222    34566777788899999999999


Q ss_pred             HHHHHcCCC--CCC--HHHHHHHHHHHhccCCcHHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHH
Q 007998          198 KRMKMEGVF--KPN--EVTVLGALAACGHLGAWKEGDKIHEYIREE----RLD--M-NVVVCNAVIDMYAKCGLLDKAFE  266 (582)
Q Consensus       198 ~~m~~~g~~--~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~y~~~g~~~~A~~  266 (582)
                      .+.....--  .+.  ..++..+...+...|+++.|...+++..+.    +..  + ....+..+...+...|++++|..
T Consensus       515 ~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  594 (903)
T PRK04841        515 QQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ  594 (903)
T ss_pred             HHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            887643110  111  234555667788899999999998887652    221  1 23345566677888899999999


Q ss_pred             HHhccc-----CCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC--CCCC--HHHH--HHHHHHHHcCCCHHHHHH
Q 007998          267 VFDNIK-----CRK--SLVTWNTMVMAFAVHGDGPRALELFEQMGRAG--VKPD--DVSY--LAALCACNHAGLVDDGVR  333 (582)
Q Consensus       267 ~~~~~~-----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~t~--~~ll~a~~~~g~~~~a~~  333 (582)
                      .+++..     ..+  ....+..+...+...|++++|...+.+.....  ..+.  ....  ...+..+...|+.+.|..
T Consensus       595 ~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  674 (903)
T PRK04841        595 CARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAAN  674 (903)
T ss_pred             HHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHH
Confidence            888653     011  13345556677889999999999998875421  1111  1011  112234455889999999


Q ss_pred             HHHHHhHcCCccC---hhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 007998          334 LFNSMANCGVKPN---MKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGT-DMVLWQTLLGACQLYGDVEMAEIAS  402 (582)
Q Consensus       334 ~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  402 (582)
                      .+...........   ...+..+..++...|++++|...+++.       +..+ ...+...+..++...|+.++|...+
T Consensus       675 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L  754 (903)
T PRK04841        675 WLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVL  754 (903)
T ss_pred             HHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8877654211111   111345667788999999999888765       2222 2345666677889999999999999


Q ss_pred             HHHHHcCCC
Q 007998          403 RKLVEMGSN  411 (582)
Q Consensus       403 ~~~~~~~p~  411 (582)
                      ++++++...
T Consensus       755 ~~Al~la~~  763 (903)
T PRK04841        755 LEALKLANR  763 (903)
T ss_pred             HHHHHHhCc
Confidence            999997643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.70  E-value=0.00012  Score=68.29  Aligned_cols=295  Identities=9%  Similarity=0.022  Sum_probs=194.5

Q ss_pred             CCCHHHHHHHHhcCCCCChhHHHHHH---HHHHcCCCchHHHHHHHHHHhCCCCCChhHHH-HHHHHHHhcCChHHHHHH
Q 007998           55 LNELAYAHALFRQINAPSTNDFNAVL---RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCS-FALKACARVLALFETLQI  130 (582)
Q Consensus        55 ~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~  130 (582)
                      +|.+.+|+.-|....+-|+..|.++-   ..|...|+...|+.=|.+.++  .+||-..-. .-...+.+.|.+++|.+=
T Consensus        51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~D  128 (504)
T KOG0624|consen   51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEAD  128 (504)
T ss_pred             hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHH
Confidence            38999999999888877777777665   578888999999999999887  577743211 122356789999999999


Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCH
Q 007998          131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE  210 (582)
Q Consensus       131 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~  210 (582)
                      |+.++.....  ..   ....++.+.-..++-+.+            ...+..+.-+|+...|++....+++..  +.|.
T Consensus       129 F~~vl~~~~s--~~---~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda  189 (504)
T KOG0624|consen  129 FDQVLQHEPS--NG---LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLEIQ--PWDA  189 (504)
T ss_pred             HHHHHhcCCC--cc---hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHhcC--cchh
Confidence            9999987532  11   111222222222222222            123444556777777777777777664  5677


Q ss_pred             HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHH----HHHHH--
Q 007998          211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLV----TWNTM--  283 (582)
Q Consensus       211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~----~~~~l--  283 (582)
                      ..+..-..+|...|.+..|..=+..+-+..-+ ++....-+-..+.+.|+.+.++...++.. ..||..    .|..+  
T Consensus       190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK  268 (504)
T KOG0624|consen  190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK  268 (504)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence            77777777777777777776666665554433 44555556666777777777777666543 234322    12111  


Q ss_pred             -------HHHHHhCCChhHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHh
Q 007998          284 -------VMAFAVHGDGPRALELFEQMGRAGVKPDDVS---YLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGS  352 (582)
Q Consensus       284 -------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~  352 (582)
                             +......+++.++++-.+...+.......++   +..+-.++...+++.+|++.-.++..  +.|+ +.++.-
T Consensus       269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~d  346 (504)
T KOG0624|consen  269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCD  346 (504)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHH
Confidence                   1234557788888888888776532212233   33344566678899999999988886  4455 778877


Q ss_pred             hhhHHhhcCCHHHHHHHHHhC
Q 007998          353 VVDLLGRAGRLQEACDIVKSV  373 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~  373 (582)
                      -.++|.-...+++|..-|+..
T Consensus       347 RAeA~l~dE~YD~AI~dye~A  367 (504)
T KOG0624|consen  347 RAEAYLGDEMYDDAIHDYEKA  367 (504)
T ss_pred             HHHHHhhhHHHHHHHHHHHHH
Confidence            788999999999999988876

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.69  E-value=0.00016  Score=74.63  Aligned_cols=383  Identities=13%  Similarity=0.045  Sum_probs=233.3

Q ss_pred             hhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC--C--CChhHHHHHH-HHHH-cCCCchH
Q 007998           19 HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN--A--PSTNDFNAVL-RGLA-HSSKPTN   91 (582)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~--~--~~~~~~~~li-~~~~-~~g~~~~   91 (582)
                      +..+-..+++....-+...      -.|+.+-..|.- |.-..|..+++.-.  .  |+..+--.|+ ..|. +.+..++
T Consensus       339 f~~lae~fE~~~~~~~~~~------e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~ee  412 (799)
T KOG4162|consen  339 FEVLAEQFEQALPFSFGEH------ERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEE  412 (799)
T ss_pred             HHHHHHHHHHHhHhhhhhH------HHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhh
Confidence            5666666666655444332      224667777777 88888888887643  2  4333333333 3343 3467777


Q ss_pred             HHHHHHHHHhC--CC--CCChhHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 007998           92 AVLWYRQMLRG--SH--RSDALTCSFALKACARV-----------LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKV  156 (582)
Q Consensus        92 A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~  156 (582)
                      +++.-.+....  +.  ...+..|..+.-+|...           ....++.+.++..++.+.. |+.+.--+.--|+..
T Consensus       413 gldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~  491 (799)
T KOG4162|consen  413 GLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQ  491 (799)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHH
Confidence            77776666551  11  11222333333333211           1234567778888777643 333333355568888


Q ss_pred             CCHHHHHHHHhhc----CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHH
Q 007998          157 GEIVSAKKVFDEM----GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKI  232 (582)
Q Consensus       157 g~~~~A~~~f~~m----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~  232 (582)
                      ++++.|.....+.    ..-+...|.-+.-.+.-.+++.+|+.+.+.....-  +.|-.....-+..-...++.+++...
T Consensus       492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~~~~~~~e~~l~t  569 (799)
T KOG4162|consen  492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIELTFNDREEALDT  569 (799)
T ss_pred             HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhhhhcccHHHHHHH
Confidence            9999998877665    34478899999999999999999999998876652  22222111122222223444444433


Q ss_pred             HHHHHHc---------------------CCC-------CchhHHHHHHHHHHhcC---CHHHHHHHHhcccCCCC-----
Q 007998          233 HEYIREE---------------------RLD-------MNVVVCNAVIDMYAKCG---LLDKAFEVFDNIKCRKS-----  276 (582)
Q Consensus       233 ~~~~~~~---------------------~~~-------~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~~~~-----  276 (582)
                      ...++..                     |..       ....++.-+.......+   ..+.....+...+ .|+     
T Consensus       570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~-~~~~~~~~  648 (799)
T KOG4162|consen  570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP-GPDSLWYL  648 (799)
T ss_pred             HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC-CCCchHHH
Confidence            3322210                     110       01122222211111111   1111112222222 333     


Q ss_pred             -HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhh
Q 007998          277 -LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVV  354 (582)
Q Consensus       277 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li  354 (582)
                       ...|......+...+..++|...+.+.... ..-....|......+...|.+++|.+.|.....  +.| ++....++.
T Consensus       649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala  725 (799)
T KOG4162|consen  649 LQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALA  725 (799)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHH
Confidence             234666777888899999998888777653 222344566666677788999999999988886  345 456778899


Q ss_pred             hHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998          355 DLLGRAGRLQEACD--IVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG  414 (582)
Q Consensus       355 ~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  414 (582)
                      .++.+.|+..-|..  ++..+ .+.| +...|..+...+.+.|+.+.|.+.|.-..++++.+|.
T Consensus       726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            99999998777777  77776 6666 7899999999999999999999999999999876653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.69  E-value=7.7e-06  Score=83.07  Aligned_cols=190  Identities=19%  Similarity=0.290  Sum_probs=87.7

Q ss_pred             HhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 007998          220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL  299 (582)
Q Consensus       220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  299 (582)
                      ......+.+|..+++.+.+...  -..-|..+.+-|+..|+++.|+++|-+..      .++--|..|.+.|++++|.++
T Consensus       742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~------~~~dai~my~k~~kw~da~kl  813 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD------LFKDAIDMYGKAGKWEDAFKL  813 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc------hhHHHHHHHhccccHHHHHHH
Confidence            3344455555555555444321  12233445555555666666666554443      123334555556666655555


Q ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCH
Q 007998          300 FEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM  379 (582)
Q Consensus       300 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~  379 (582)
                      -.+..  |.......|..-..-.-..|++.+|+++|-.+.    .|+.     -|.+|-+.|..++.+++.++-.-..-.
T Consensus       814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~  882 (1636)
T KOG3616|consen  814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLH  882 (1636)
T ss_pred             HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhh
Confidence            44432  112222333333333444555555555443322    2332     244555555555555555544111112


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 007998          380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR  436 (582)
Q Consensus       380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~  436 (582)
                      .+...+..-+-..|++..|++.|-++        .-+..-.++|...+.|++|.++-
T Consensus       883 dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayria  931 (1636)
T KOG3616|consen  883 DTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIA  931 (1636)
T ss_pred             HHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHH
Confidence            23334444445555555555554433        23344455555555555555543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.68  E-value=2.7e-05  Score=80.27  Aligned_cols=350  Identities=12%  Similarity=0.085  Sum_probs=218.9

Q ss_pred             HHHHh--cCCC-CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhC-C--------CCCChhHHHHH
Q 007998           47 IEFYA--LSPL-NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-S--------HRSDALTCSFA  114 (582)
Q Consensus        47 ~~li~--~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~~~~~l  114 (582)
                      .++++  .|.. |+++.|.+-.+.+.  +-..|..|.+.|.+..+.+-|.-.+-.|... |        -.|+ .+=..+
T Consensus       730 kaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakv  806 (1416)
T KOG3617|consen  730 KAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKV  806 (1416)
T ss_pred             HhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHH
Confidence            46665  4555 99999988887775  5678999999999999888887777666431 1        1222 222223


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhHHHHHHHHHHhCCChhHH
Q 007998          115 LKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRD-IASWNALIAGLAQGNLASEA  193 (582)
Q Consensus       115 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A  193 (582)
                      .-.....|.+++|+.+|.+-.+..         .|=..|-..|.+++|.++-+.-..-. ..||..-..-+-..++.+.|
T Consensus       807 AvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~A  877 (1416)
T KOG3617|consen  807 AVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAA  877 (1416)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHH
Confidence            333457899999999999877652         23456778899999998865432111 23555556656667888888


Q ss_pred             HHHHHHH----------HHcCC--------CCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          194 VDLFKRM----------KMEGV--------FKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY  255 (582)
Q Consensus       194 ~~~~~~m----------~~~g~--------~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y  255 (582)
                      ++.|++.          +....        ...|...|.-...-.-..|+.+.|..++....+         |-+++...
T Consensus       878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~  948 (1416)
T KOG3617|consen  878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK  948 (1416)
T ss_pred             HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence            8887754          22210        012333344444444556677777666665543         44566666


Q ss_pred             HhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-----------
Q 007998          256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH-----------  324 (582)
Q Consensus       256 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-----------  324 (582)
                      +-.|+.++|-++-++-.   |......+...|-..|++.+|...|.+.+.         |...|+.|-.           
T Consensus       949 C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen  949 CIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred             eeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHH
Confidence            66788888877766544   666667788889999999999999887643         3333333322           


Q ss_pred             ----CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHH-HHhC----------CC--CCCHHHHHHHHH
Q 007998          325 ----AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI-VKSV----------SM--GTDMVLWQTLLG  387 (582)
Q Consensus       325 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~~----------~~--~p~~~~~~~ll~  387 (582)
                          ..+.-.|-++|++.--   .     ...-+..|-++|.+.+|+++ |+.-          .+  ..|+...+--..
T Consensus      1017 l~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred             hhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence                2334444555544321   1     12245678889999888876 2211          12  236666666666


Q ss_pred             HHHhcCChHHHHHHHHHHHHc----------------------CCC---------CchhHHHHHHHHHhcCCchHHHHHH
Q 007998          388 ACQLYGDVEMAEIASRKLVEM----------------------GSN---------NCGDFVLLSNLYAAYERWDDVGRVR  436 (582)
Q Consensus       388 ~~~~~g~~~~a~~~~~~~~~~----------------------~p~---------~~~~~~~l~~~~~~~g~~~~a~~~~  436 (582)
                      -+..+.++++|..++-...+.                      .|.         .......++..|.++|.+..|.+-|
T Consensus      1089 FF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            667777788777665443221                      121         0235667889999999888776654


Q ss_pred             H
Q 007998          437 K  437 (582)
Q Consensus       437 ~  437 (582)
                      .
T Consensus      1169 T 1169 (1416)
T KOG3617|consen 1169 T 1169 (1416)
T ss_pred             h
Confidence            3

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.67  E-value=1.6e-06  Score=83.09  Aligned_cols=84  Identities=17%  Similarity=0.182  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 007998          328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDV-EMAEIASRK  404 (582)
Q Consensus       328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~  404 (582)
                      +.+|..+|+++.. ...++..+.+.+.-+....|++++|.+++++. ...| |+.++..++......|+. +.+.+.+.+
T Consensus       183 ~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  183 YQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            3444444444333 11233333444444444444444444444432 2222 344444455555555554 445555555


Q ss_pred             HHHcCCCC
Q 007998          405 LVEMGSNN  412 (582)
Q Consensus       405 ~~~~~p~~  412 (582)
                      +....|..
T Consensus       262 L~~~~p~h  269 (290)
T PF04733_consen  262 LKQSNPNH  269 (290)
T ss_dssp             CHHHTTTS
T ss_pred             HHHhCCCC
Confidence            55555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.61  E-value=3.8e-06  Score=75.89  Aligned_cols=147  Identities=7%  Similarity=0.067  Sum_probs=109.6

Q ss_pred             HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHH
Q 007998          285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ  364 (582)
Q Consensus       285 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  364 (582)
                      ..|...|+++.+....+.+..    |.        ..+...++.+++...++...+.+ +.+...|..|...|...|+++
T Consensus        24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~   90 (198)
T PRK10370         24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD   90 (198)
T ss_pred             HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence            457777777765444332221    11        01223566677777777777633 456788888888999999999


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998          365 EACDIVKSV-SMGT-DMVLWQTLLGAC-QLYGD--VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM  439 (582)
Q Consensus       365 ~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  439 (582)
                      +|...|++. ...| +...+..+..++ ...|+  .++|.++++++++.+|+++.++..++..+...|++++|...++++
T Consensus        91 ~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370         91 NALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999998876 4455 677788877764 66676  599999999999999999999999999999999999999999998


Q ss_pred             HhCCC
Q 007998          440 KNRDV  444 (582)
Q Consensus       440 ~~~~~  444 (582)
                      .+...
T Consensus       171 L~l~~  175 (198)
T PRK10370        171 LDLNS  175 (198)
T ss_pred             HhhCC
Confidence            87544

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=9.1e-06  Score=74.15  Aligned_cols=309  Identities=13%  Similarity=0.071  Sum_probs=161.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHH-HHHHH
Q 007998          108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNA-LIAGL  184 (582)
Q Consensus       108 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~  184 (582)
                      .--+.+++..+.+..++..+++++..-.+.. +.+..-.+.|..+|....++..|-..++++..  |...-|.. -...+
T Consensus        10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL   88 (459)
T ss_pred             CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence            3345666666667777777777777666654 22555666777777777778888777777653  22222211 12445


Q ss_pred             HhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH--HhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007998          185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA--CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD  262 (582)
Q Consensus       185 ~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~  262 (582)
                      -+.+.+.+|+.+...|...    |+...-..-+.+  .-+.+++..++.+.++....|   +..+.+...-...+.|+++
T Consensus        89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence            5667777777777666432    221111111111  123344444444444332111   2222333333334445555


Q ss_pred             HHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHcCCCHHHHHHHH
Q 007998          263 KAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS----YLAALCACNHAGLVDDGVRLF  335 (582)
Q Consensus       263 ~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~g~~~~a~~~~  335 (582)
                      .|.+-|+...   .-.....||.-+ +..+.|+++.|+++..++++.|++-....    -.-.+++- ..|+.   ..+.
T Consensus       162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh  236 (459)
T KOG4340|consen  162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLH  236 (459)
T ss_pred             HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHH
Confidence            5555554332   011223333222 22334445555555555544443311100    00000000 00000   0000


Q ss_pred             HHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998          336 NSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM----GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN  411 (582)
Q Consensus       336 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  411 (582)
                      ...       -+..+|.-...+.+.|+++.|.+-+-.||-    +.|++|...+.-. ...+++..+.+-+.-+++++|-
T Consensus       237 ~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf  308 (459)
T KOG4340|consen  237 QSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF  308 (459)
T ss_pred             HHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC
Confidence            000       011222233346688999999999999952    2377777665422 2356677888888888999998


Q ss_pred             CchhHHHHHHHHHhcCCchHHHHHHH
Q 007998          412 NCGDFVLLSNLYAAYERWDDVGRVRK  437 (582)
Q Consensus       412 ~~~~~~~l~~~~~~~g~~~~a~~~~~  437 (582)
                      .+.++..++-.|++..-++-|..++-
T Consensus       309 P~ETFANlLllyCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  309 PPETFANLLLLYCKNEYFDLAADVLA  334 (459)
T ss_pred             ChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence            88899999999999999999988875

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=0.00011  Score=68.92  Aligned_cols=214  Identities=13%  Similarity=0.057  Sum_probs=113.1

Q ss_pred             HHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCH
Q 007998           80 LRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEI  159 (582)
Q Consensus        80 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~  159 (582)
                      +.-+..+.++..|+.+++--...+-+-...+-.-+..++-..|++++|...+..+.... .++..++-.|.-.+.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            56666677888888887766543322121222223334457788888888887776643 55566666666666667777


Q ss_pred             HHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc
Q 007998          160 VSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE  239 (582)
Q Consensus       160 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~  239 (582)
                      .+|..+-...+. +...-..|...-.+.++-++-+.+-..+...   .   .--.++.+..-....+.+|..++..++..
T Consensus       108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~---~---EdqLSLAsvhYmR~HYQeAIdvYkrvL~d  180 (557)
T KOG3785|consen  108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT---L---EDQLSLASVHYMRMHYQEAIDVYKRVLQD  180 (557)
T ss_pred             HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh---H---HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777777655432 1222223334444556555555444444221   1   12223333333344567777777777664


Q ss_pred             CCCCchhHHHH-HHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998          240 RLDMNVVVCNA-VIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQM  303 (582)
Q Consensus       240 ~~~~~~~~~~~-li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  303 (582)
                      +  |+-...|. +.-.|.|..-++-+.++++--.  .+.++..-|.......+.=....|..-.+++
T Consensus       181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~l  245 (557)
T KOG3785|consen  181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKEL  245 (557)
T ss_pred             C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence            3  23222222 3345666666666666655322  1334455555555554443333444444443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.59  E-value=1.6e-05  Score=86.42  Aligned_cols=232  Identities=13%  Similarity=0.066  Sum_probs=183.6

Q ss_pred             CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC---CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-C-hhHHH
Q 007998          106 SD-ALTCSFALKACARVLALFETLQIHSHVLRH-GFL---ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-D-IASWN  178 (582)
Q Consensus       106 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~  178 (582)
                      || ...|..-|.-..+.++++.|+++.+++++. ++.   --..+|.+++++-...|.-+...++|++..+- | -..|.
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence            44 446777777788999999999999999874 221   12357889999988899999999999998653 3 35688


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHh
Q 007998          179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-NVVVCNAVIDMYAK  257 (582)
Q Consensus       179 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~  257 (582)
                      .|...|.+.+.+++|.++|+.|.+.-  .-....|...+..+.+..+-+.|..++.++++.-... .+....-.+++-.+
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKF--GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHh--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            99999999999999999999998762  5567789999999999999999999999988763321 35566677888899


Q ss_pred             cCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHcCCCHHHHHH
Q 007998          258 CGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVR  333 (582)
Q Consensus       258 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~  333 (582)
                      +|+.+.++.+|+...  .++-...|+..|..-.++|+.+.+..+|++....++.|-.  ..|...|..=.+.|+-+.++.
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence            999999999999875  3456789999999999999999999999999999888765  356666655555555554444


Q ss_pred             HHHHHh
Q 007998          334 LFNSMA  339 (582)
Q Consensus       334 ~~~~~~  339 (582)
                      +-.++.
T Consensus      1693 VKarA~ 1698 (1710)
T KOG1070|consen 1693 VKARAK 1698 (1710)
T ss_pred             HHHHHH
Confidence            443333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.58  E-value=5.7e-06  Score=77.70  Aligned_cols=182  Identities=12%  Similarity=0.022  Sum_probs=124.2

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC-H---HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH----H
Q 007998          243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS-L---VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD----V  313 (582)
Q Consensus       243 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~  313 (582)
                      .....+..+...|.+.|++++|...|+++. ..|+ .   .+|..+..+|...|++++|+..++++.+.  .|+.    .
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~  108 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY  108 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence            346677778888888999999999988764 2232 2   46777888888899999999999998874  3322    1


Q ss_pred             HHHHHHHHHHcC--------CCHHHHHHHHHHHhHcCCccChh-hHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 007998          314 SYLAALCACNHA--------GLVDDGVRLFNSMANCGVKPNMK-HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT  384 (582)
Q Consensus       314 t~~~ll~a~~~~--------g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  384 (582)
                      ++..+..++.+.        |+.+.|.+.|+.+...  .|+.. .+..+...    +......           ......
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~  171 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY  171 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence            344444455543        6677888888887763  23321 12111110    0000000           011224


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          385 LLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      +...+...|+++.|...++++++..|++   +..+..++.+|...|++++|..+++.+..+.
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            5567889999999999999999987754   4688999999999999999999999887543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.56  E-value=6.3e-06  Score=89.51  Aligned_cols=197  Identities=13%  Similarity=0.115  Sum_probs=153.9

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccc--C-----CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHH
Q 007998          244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--C-----RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSY  315 (582)
Q Consensus       244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~  315 (582)
                      ....|-..|......+++++|++++++..  +     +.-...|.++++.-...|.-+...++|+++.+.   -|. ..|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYTVH 1533 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHHHH
Confidence            45667777777888888888888887654  1     112356888888777778778888888888763   233 467


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 007998          316 LAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV----SMGTDMVLWQTLLGACQ  390 (582)
Q Consensus       316 ~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~  390 (582)
                      ..|...|.+.+..++|.++++.|.+ .+  -....|..+++.+.+.++-++|..++++.    |.+.......-.+..-.
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            7888888888899999999999988 55  56677888888888888888888888765    32224555566666677


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      ++|+.+++..+|+..+...|.....|..++++-.+.|..+.++.+|++....++.
T Consensus      1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            8899999999999999999988889999999999999999999999999887765

>PF12854 PPR_1: PPR repeat

Probab=98.56  E-value=1.1e-07  Score=58.04  Aligned_cols=33  Identities=39%  Similarity=0.560  Sum_probs=26.2

Q ss_pred             CCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007998          138 GFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG  170 (582)
Q Consensus       138 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~  170 (582)
                      |+.||..+||+||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            677888888888888888888888888888774

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=0.00021  Score=71.55  Aligned_cols=340  Identities=17%  Similarity=0.103  Sum_probs=200.4

Q ss_pred             hcCCC---CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChHH
Q 007998           51 ALSPL---NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS-DALTCSFALKACARVLALFE  126 (582)
Q Consensus        51 ~~y~~---g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~  126 (582)
                      .+|+-   +..++|...++...+-|...-..-...+-+.|++++|+++|+.+.+.+..- |...-..++.+-+.      
T Consensus        85 KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~------  158 (652)
T KOG2376|consen   85 KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA------  158 (652)
T ss_pred             HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh------
Confidence            44554   899999999986655555566666677889999999999999998765321 11122222222111      


Q ss_pred             HHHHHHHHHHcCCCC--ch-HHHHHHHHHHHhcCCHHHHHHHHhhc--------CCCC-----hh-----HHHHHHHHHH
Q 007998          127 TLQIHSHVLRHGFLA--DA-LLGTTLLDVYAKVGEIVSAKKVFDEM--------GVRD-----IA-----SWNALIAGLA  185 (582)
Q Consensus       127 a~~~~~~~~~~g~~~--~~-~~~~~li~~y~~~g~~~~A~~~f~~m--------~~~~-----~~-----~~~~li~~~~  185 (582)
                       .+. +.+......|  +- ..|| ....+...|++.+|+++++..        ...|     ..     .---|.-.+.
T Consensus       159 -l~~-~~~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ  235 (652)
T KOG2376|consen  159 -LQV-QLLQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ  235 (652)
T ss_pred             -hhH-HHHHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence             111 0111111122  11 2333 455677889999999998876        1111     11     1223445567


Q ss_pred             hCCChhHHHHHHHHHHHcCCCCCCHHHHHHHH---HHHhccCCcHH--HHHHHHH------------H------------
Q 007998          186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL---AACGHLGAWKE--GDKIHEY------------I------------  236 (582)
Q Consensus       186 ~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll---~a~~~~~~~~~--a~~~~~~------------~------------  236 (582)
                      ..|+-++|.+++...++..  ++|........   .+...-.++-.  ....++.            +            
T Consensus       236 ~~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~  313 (652)
T KOG2376|consen  236 LQGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN  313 (652)
T ss_pred             HhcchHHHHHHHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999999998876  56653322222   12221111111  0000000            0            


Q ss_pred             -----------------HHc-CCCCchhHHHHHHHHHHhcC--CHHHHHHHHhccc-C--CCCHHHHHHHHHHHHhCCCh
Q 007998          237 -----------------REE-RLDMNVVVCNAVIDMYAKCG--LLDKAFEVFDNIK-C--RKSLVTWNTMVMAFAVHGDG  293 (582)
Q Consensus       237 -----------------~~~-~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~-~--~~~~~~~~~li~~~~~~g~~  293 (582)
                                       ... +..|. ..+.+++....++.  ....|.+++.... .  ....+.--.++......|++
T Consensus       314 ~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~  392 (652)
T KOG2376|consen  314 ALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP  392 (652)
T ss_pred             HHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence                             000 22222 33344444333322  3556666665543 1  22345666677788899999


Q ss_pred             hHHHHHHH--------HHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH--cCCccChhhHH----hhhhHHhh
Q 007998          294 PRALELFE--------QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPNMKHYG----SVVDLLGR  359 (582)
Q Consensus       294 ~~A~~~~~--------~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~----~li~~~~~  359 (582)
                      +.|++++.        ...+.+..|-.+  ..+...+.+.++.+.|..++.+...  ..-.+......    -++..-.+
T Consensus       393 ~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr  470 (652)
T KOG2376|consen  393 EVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR  470 (652)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence            99999999        555555566544  4466667788888888888888776  22223333333    33444457


Q ss_pred             cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998          360 AGRLQEACDIVKSV-S-MGTDMVLWQTLLGACQLYGDVEMAEIASRKL  405 (582)
Q Consensus       360 ~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  405 (582)
                      .|+-++|..+++++ . ..+|..+...++.+|++. +.+.|+.+-+++
T Consensus       471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            89999999999998 3 345889999999999876 678887776654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.54  E-value=0.00013  Score=74.60  Aligned_cols=254  Identities=15%  Similarity=0.162  Sum_probs=131.4

Q ss_pred             cCCHHHHHHHHhhcCCCChh--HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHH
Q 007998          156 VGEIVSAKKVFDEMGVRDIA--SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH  233 (582)
Q Consensus       156 ~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~  233 (582)
                      ...+.+|..+++.+..+++.  -|..+..-|+..|+++.|.++|-+.   +       .+.-.+..|.+.|.++.|.++-
T Consensus       745 akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---~-------~~~dai~my~k~~kw~da~kla  814 (1636)
T KOG3616|consen  745 AKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---D-------LFKDAIDMYGKAGKWEDAFKLA  814 (1636)
T ss_pred             hhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---c-------hhHHHHHHHhccccHHHHHHHH
Confidence            33444444444444433322  2334444455555555555554322   1       1233344455555555554443


Q ss_pred             HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-
Q 007998          234 EYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-  312 (582)
Q Consensus       234 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-  312 (582)
                      .+.  .|.+.....|-+-..-.-+.|++.+|+++|-.+. .|+..     |..|-++|..+..+++..+-     .|+. 
T Consensus       815 ~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l  881 (1636)
T KOG3616|consen  815 EEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHL  881 (1636)
T ss_pred             HHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchHH-----HHHHHhhCcchHHHHHHHHh-----Chhhh
Confidence            322  2223334444444444445555555555555544 44432     44455555555555555442     3443 


Q ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCC-C---CHHHHHH---
Q 007998          313 -VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMG-T---DMVLWQT---  384 (582)
Q Consensus       313 -~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p---~~~~~~~---  384 (582)
                       .|-..+..-+...|++..|+..|-+...         |.+-+.+|-..+.+++|.++-+.-+-. .   -...|..   
T Consensus       882 ~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksig  952 (1636)
T KOG3616|consen  882 HDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIG  952 (1636)
T ss_pred             hHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhC
Confidence             3555666677778888888877755443         446677888888888888887654211 0   1122221   


Q ss_pred             ---HHHHHHhcCChH-------------HHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          385 ---LLGACQLYGDVE-------------MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       385 ---ll~~~~~~g~~~-------------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                         ....+.++|-++             .|..+.+-..+.  .-+.....++.-+...|++++|.+-+-+..+.+
T Consensus       953 gdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen  953 GDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred             cHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence               112233344333             333333332222  234566778888889999999988777665543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.53  E-value=3e-06  Score=72.41  Aligned_cols=122  Identities=11%  Similarity=0.022  Sum_probs=83.2

Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC
Q 007998          298 ELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG  376 (582)
Q Consensus       298 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~  376 (582)
                      .+|++..+  +.|+.  +.....++...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++. ...
T Consensus        14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34444444  34543  3345556677777777777777777632 335666777777777778888888777766 334


Q ss_pred             C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          377 T-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       377 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      | +...|..+..++...|++++|...|+++++..|+++..+...+.+..
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            4 66777777777888888888888888888888887777766665543

>PLN02789 farnesyltranstransferase

Probab=98.53  E-value=5.1e-05  Score=73.72  Aligned_cols=233  Identities=14%  Similarity=0.067  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDM  254 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  254 (582)
                      ++..+-..+...++.++|+.++.++++..  +-+..+|.....++...| .++++...++.+++...+ +..+|+....+
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~  115 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence            45555555666677777777777776653  333444555545555555 456666666666665433 44445544444


Q ss_pred             HHhcCCH--HHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH
Q 007998          255 YAKCGLL--DKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD  330 (582)
Q Consensus       255 y~~~g~~--~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  330 (582)
                      +.+.|+.  +++..+++++.  .+.|..+|+.....+...|+++++++.++++++.+.. |...|+.....+.+.++.. 
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~-  193 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG-  193 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc-
Confidence            4444442  44455554433  2345556666555555666666666666666554322 2233333222222111000 


Q ss_pred             HHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHH
Q 007998          331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSMGT-DMVLWQTLLGACQLY----GDVEMAEIASRK  404 (582)
Q Consensus       331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~  404 (582)
                                 +                .....+++.++..+ +...| |...|+.+...+...    ++..+|.+.+.+
T Consensus       194 -----------~----------------~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~  246 (320)
T PLN02789        194 -----------G----------------LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE  246 (320)
T ss_pred             -----------c----------------ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence                       0                00012345555533 34445 677888777777663    345678888888


Q ss_pred             HHHcCCCCchhHHHHHHHHHhcC------------------CchHHHHHHHHHH
Q 007998          405 LVEMGSNNCGDFVLLSNLYAAYE------------------RWDDVGRVRKAMK  440 (582)
Q Consensus       405 ~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~  440 (582)
                      +.+.+|.++.++..|+..|....                  ..++|.++++.+.
T Consensus       247 ~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        247 VLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             hhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            88888888888889999997632                  2366788887774

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.51  E-value=3.1e-05  Score=79.24  Aligned_cols=191  Identities=16%  Similarity=0.186  Sum_probs=159.6

Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007998          240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL  319 (582)
Q Consensus       240 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  319 (582)
                      +++|-...-..+...+.++|-...|..+|+++.      .|...|.+|...|+..+|..+..+-.+  -+||...|..+.
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG  464 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG  464 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence            445566677788999999999999999999987      677889999999999999999998887  488999999999


Q ss_pred             HHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHH
Q 007998          320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSMGT-DMVLWQTLLGACQLYGDVEM  397 (582)
Q Consensus       320 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~  397 (582)
                      +..-...-+++|.++++.....       .-..+.....+.++++++.+.|+. +.++| ...+|-.+..+..+.++++.
T Consensus       465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            8888888889999888876542       111222333457899999999985 45555 67889888888899999999


Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          398 AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       398 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      |.+.|.....++|++...++.++.+|.+.|+..+|...+++..+-+..
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~  585 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ  585 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999999999999999998876643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.51  E-value=2.2e-05  Score=80.34  Aligned_cols=217  Identities=12%  Similarity=0.116  Sum_probs=176.0

Q ss_pred             CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007998          139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA  218 (582)
Q Consensus       139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~  218 (582)
                      ++|-......+...+...|-...|..+|++.     ..|.-.|..|...|+..+|..+..+-.+.   +||+..|..+++
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGD  465 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGD  465 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhh
Confidence            4555566677889999999999999999985     57888999999999999999999988874   899999999999


Q ss_pred             HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C-CCCHHHHHHHHHHHHhCCChhHH
Q 007998          219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C-RKSLVTWNTMVMAFAVHGDGPRA  296 (582)
Q Consensus       219 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A  296 (582)
                      ......-+++|.++.+..-..       .-..+.....+.++++++.+.|+.-. . +--..+|-....+..+.+++..|
T Consensus       466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence            988888888888888765432       11222222334789999999998532 1 44677999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998          297 LELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV  373 (582)
Q Consensus       297 ~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  373 (582)
                      .+.|..-..  ..||. ..|+.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+......|.+++|.+.+.++
T Consensus       539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            999998876  57776 589999999999999999999999999966 344455666666778899999999998876

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.51  E-value=4.8e-05  Score=78.57  Aligned_cols=337  Identities=10%  Similarity=0.051  Sum_probs=208.7

Q ss_pred             CCCChhHHHHHHH--HHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-------
Q 007998           69 NAPSTNDFNAVLR--GLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH-G-------  138 (582)
Q Consensus        69 ~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g-------  138 (582)
                      ..=|..+-.+++.  .|+.-|+.+.|.+-.+-..      +...|..+.+.|.+..+++-|+-.+..|... |       
T Consensus       722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a  795 (1416)
T KOG3617|consen  722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA  795 (1416)
T ss_pred             cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence            3446677777774  5778899999988877654      4578999999999999988888777766431 1       


Q ss_pred             C-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 007998          139 F-LADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL  217 (582)
Q Consensus       139 ~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll  217 (582)
                      . .++ ..-....-.-...|.+++|+.+|.+-..     |..|=..|...|.+++|+++-+.=-.-.    -..||..-.
T Consensus       796 ~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA  865 (1416)
T KOG3617|consen  796 QQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYA  865 (1416)
T ss_pred             HhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhcccee----hhhhHHHHH
Confidence            1 221 2222333345577999999999988643     4445567788999999999865432222    234566556


Q ss_pred             HHHhccCCcHHHHHHHHHHH----------HcC---------CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHH
Q 007998          218 AACGHLGAWKEGDKIHEYIR----------EER---------LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV  278 (582)
Q Consensus       218 ~a~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~  278 (582)
                      .-+-..++.+.|.++|++.-          ...         -..|...|.--....-..|+.+.|+.+|....      
T Consensus       866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~------  939 (1416)
T KOG3617|consen  866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK------  939 (1416)
T ss_pred             HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh------
Confidence            66666778888888876531          110         01122333333344445666666666666554      


Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHc--CCc------cChhhH
Q 007998          279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC--GVK------PNMKHY  350 (582)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~~------~~~~~~  350 (582)
                      -|-+++...+-.|+.++|-++-++      .-|....-.+.+.|.+.|++.+|..+|.+....  .+.      .+...+
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            355556666667777777766654      225555556788899999999999988877651  111      111112


Q ss_pred             HhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----------HHcCCC-CchhHHHH
Q 007998          351 GSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL----------VEMGSN-NCGDFVLL  419 (582)
Q Consensus       351 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~----------~~~~p~-~~~~~~~l  419 (582)
                      |  +....+..+.-.|-.+|++.+..-     ......|.+.|.+.+|+++.=+-          ..++|. ||.....-
T Consensus      1014 n--lal~s~~~d~v~aArYyEe~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1014 N--LALMSGGSDLVSAARYYEELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred             H--HHhhcCchhHHHHHHHHHHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence            1  112223344556667777765322     12234566777777777664331          224553 66677777


Q ss_pred             HHHHHhcCCchHHHHHHHHHH
Q 007998          420 SNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       420 ~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      ++.+....+++.|..++-..+
T Consensus      1087 adFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred             HHHHHhHHHHHHHHHHHHHHH
Confidence            777778888888887766554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=1.3e-05  Score=79.93  Aligned_cols=245  Identities=16%  Similarity=0.066  Sum_probs=127.0

Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007998          184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK  263 (582)
Q Consensus       184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~  263 (582)
                      +.++|+..+|.-.|+..++..  |-+...|..|...-+..++-..|...+.+.++.... |..+.-+|.-.|...|.-.+
T Consensus       295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence            445555666666665555554  444555555555555555555565555555554322 45555555555666666666


Q ss_pred             HHHHHhccc-CCC----------CHHHHHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHcCCCHHHH
Q 007998          264 AFEVFDNIK-CRK----------SLVTWNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDG  331 (582)
Q Consensus       264 A~~~~~~~~-~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a  331 (582)
                      |.+.++.-. ..|          +...-+.  ..+..........++|-++.. .+..+|......|.-.|--.|.+++|
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            655555331 000          0000000  011111112233344444432 33233444444444445556666666


Q ss_pred             HHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998          332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMG  409 (582)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  409 (582)
                      ...|+.++... +-|..+||.|...++...+.++|...|++. .++|. +.++..|.-+|...|.+++|.+.|-.++.+.
T Consensus       450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            66666666521 224556666666666666667776666655 55554 4456666666777777777777666666543


Q ss_pred             CC----------CchhHHHHHHHHHhcCCchHHHH
Q 007998          410 SN----------NCGDFVLLSNLYAAYERWDDVGR  434 (582)
Q Consensus       410 p~----------~~~~~~~l~~~~~~~g~~~~a~~  434 (582)
                      +.          +...+..|=.++...++.|-+.+
T Consensus       529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             hcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            22          11355555555555566554433

>PF12854 PPR_1: PPR repeat

Probab=98.48  E-value=2.4e-07  Score=56.63  Aligned_cols=32  Identities=44%  Similarity=0.747  Sum_probs=21.6

Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007998          240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNI  271 (582)
Q Consensus       240 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~  271 (582)
                      |+.||..+||+||++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            55666666666666666666666666666665

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.46  E-value=3.6e-06  Score=71.89  Aligned_cols=108  Identities=6%  Similarity=-0.078  Sum_probs=92.3

Q ss_pred             HHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998          333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS  410 (582)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  410 (582)
                      .++++..+  +.|+.  +..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...|+++++++|
T Consensus        14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            44555554  23543  445778889999999999999986 4455 788999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          411 NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       411 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      +++..+..++.++...|++++|...++...+...
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p  123 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY  123 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999877554

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.42  E-value=3e-05  Score=82.99  Aligned_cols=158  Identities=7%  Similarity=-0.009  Sum_probs=124.2

Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHh
Q 007998          274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS  352 (582)
Q Consensus       274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  352 (582)
                      ..++..+-.|.....+.|.+++|..+++...+  +.||.. ....+...+.+.+++++|....++..... +-+......
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            34688888899999999999999999999987  578864 66777888999999999999999998843 334567777


Q ss_pred             hhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCch
Q 007998          353 VVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD  430 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  430 (582)
                      +..++.+.|++++|.++|++. ...| +..+|.++..++...|+.++|...|+++++...+-...|..++      ++..
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~  233 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN  233 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence            888899999999999999987 2344 4789999999999999999999999999998754445544332      2333


Q ss_pred             HHHHHHHHHH
Q 007998          431 DVGRVRKAMK  440 (582)
Q Consensus       431 ~a~~~~~~m~  440 (582)
                      .-..+++++.
T Consensus       234 ~~~~~~~~~~  243 (694)
T PRK15179        234 ADLAALRRLG  243 (694)
T ss_pred             HHHHHHHHcC
Confidence            3344555554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=9.3e-05  Score=73.30  Aligned_cols=348  Identities=11%  Similarity=0.038  Sum_probs=213.0

Q ss_pred             HHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhcCCH
Q 007998           81 RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD-ALLGTTLLDVYAKVGEI  159 (582)
Q Consensus        81 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~  159 (582)
                      .+....|+++.|+.+|.+.....+. |...|+.-..+++..|++++|.+=-...++.  .|+ ..-|+-+..+..-.|++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence            4556789999999999999876544 7788999999999999999988766555554  444 35688888888888999


Q ss_pred             HHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHH----HHHcCC----CCCCHHHHHHHHHHHhcc-----
Q 007998          160 VSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKR----MKMEGV----FKPNEVTVLGALAACGHL-----  223 (582)
Q Consensus       160 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~----~~pd~~t~~~ll~a~~~~-----  223 (582)
                      ++|+..|.+-.+.   |...++-+..++....   .+.+.|..    +...+.    ......+|..++...-+.     
T Consensus        87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            9999999887543   5667777777762110   01111110    000000    000111233333332211     


Q ss_pred             --CCcHHHHHHHHHHHHc---------------CCCC------------c----------hhHHHHHHHHHHhcCCHHHH
Q 007998          224 --GAWKEGDKIHEYIREE---------------RLDM------------N----------VVVCNAVIDMYAKCGLLDKA  264 (582)
Q Consensus       224 --~~~~~a~~~~~~~~~~---------------~~~~------------~----------~~~~~~li~~y~~~g~~~~A  264 (582)
                        .+.....+.+..+...               +..|            |          ..-...+.++.-+..+++.|
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence              0111111111111100               0011            0          01233456666667777777


Q ss_pred             HHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC--C----HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007998          265 FEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP--D----DVSYLAALCACNHAGLVDDGVRLFNS  337 (582)
Q Consensus       265 ~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~----~~t~~~ll~a~~~~g~~~~a~~~~~~  337 (582)
                      .+-++... ...+..-++....+|...|.+.+....-....+.|-.-  +    ...+..+..++.+.++++.+..+|.+
T Consensus       244 ~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k  323 (539)
T KOG0548|consen  244 IQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK  323 (539)
T ss_pred             HHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence            77777554 23344445666677888887777776666655544211  1    12233344466667788888888888


Q ss_pred             HhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998          338 MANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDM-VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       338 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  415 (582)
                      .......|+.         +.+....+++.+..+.. -+.|+. .--..=...+.+.|++..|...|.+++..+|+|+..
T Consensus       324 aLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l  394 (539)
T KOG0548|consen  324 ALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL  394 (539)
T ss_pred             HhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence            7763223332         23344455555555443 233432 122223566789999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          416 FVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       416 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      |...+-+|.+.|.+..|++--+...+.+
T Consensus       395 YsNRAac~~kL~~~~~aL~Da~~~ieL~  422 (539)
T KOG0548|consen  395 YSNRAACYLKLGEYPEALKDAKKCIELD  422 (539)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            9999999999999999998777666653

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=0.00041  Score=73.51  Aligned_cols=287  Identities=12%  Similarity=0.125  Sum_probs=174.9

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 007998           78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG  157 (582)
Q Consensus        78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  157 (582)
                      .+......++-+++|+.+|++.-     .+......++.   ..+.+++|.+.-+..      ..+.+|+.+..+-.+.|
T Consensus      1053 ~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~ 1118 (1666)
T KOG0985|consen 1053 DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGG 1118 (1666)
T ss_pred             hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcC
Confidence            34455666777899999998752     24444555554   335566666554433      14567888888888888


Q ss_pred             CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHH
Q 007998          158 EIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR  237 (582)
Q Consensus       158 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~  237 (582)
                      .+.+|.+-|-+  ..|+..|...+....+.|.|++-.+.+.-.++..- .|...  +.++-+|++.+++.+.+.+.    
T Consensus      1119 ~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id--~eLi~AyAkt~rl~elE~fi---- 1189 (1666)
T KOG0985|consen 1119 LVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYID--SELIFAYAKTNRLTELEEFI---- 1189 (1666)
T ss_pred             chHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-Cccch--HHHHHHHHHhchHHHHHHHh----
Confidence            88888887744  34667788888888888888888887776666544 55443  45677777777776655543    


Q ss_pred             HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-----------------------CCCCHHHHHHHHHHHHhCCChh
Q 007998          238 EERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-----------------------CRKSLVTWNTMVMAFAVHGDGP  294 (582)
Q Consensus       238 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----------------------~~~~~~~~~~li~~~~~~g~~~  294 (582)
                         ..||......+.+-+...|.++.|.-+|..+.                       ...+..+|...-.+|...+.+.
T Consensus      1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred             ---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhh
Confidence               23444444445555555555555554444332                       0125667877777777666554


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCc-cChhhHHhhhhHHhhcCCHHHHHHHHH--
Q 007998          295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK-PNMKHYGSVVDLLGRAGRLQEACDIVK--  371 (582)
Q Consensus       295 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--  371 (582)
                      -|     +|-...+.....-.--++.-|-..|-+++-..+++...  |++ .....|+-|.-.|.+- ++++.++-++  
T Consensus      1267 lA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1267 LA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred             HH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence            33     23322333344556778899999999999888877655  332 2345667777777664 3444444333  


Q ss_pred             --hCCCC------CCHHHHHHHHHHHHhcCChHHH
Q 007998          372 --SVSMG------TDMVLWQTLLGACQLYGDVEMA  398 (582)
Q Consensus       372 --~~~~~------p~~~~~~~ll~~~~~~g~~~~a  398 (582)
                        +..+.      .....|+-|.-.|.+...++.|
T Consensus      1339 wsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1339 WSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence              22211      1234566666555555555544

>PLN02789 farnesyltranstransferase

Probab=98.39  E-value=0.00027  Score=68.71  Aligned_cols=210  Identities=11%  Similarity=0.013  Sum_probs=148.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 007998          144 LLGTTLLDVYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGN-LASEAVDLFKRMKMEGVFKPNEVTVLGALAA  219 (582)
Q Consensus       144 ~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a  219 (582)
                      .++..+-..+...++.++|..+.+++...   +..+|+.-...+...| +++++++.++++.+..  +.+..+|....-.
T Consensus        38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~  115 (320)
T PLN02789         38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHH
Confidence            35666667788889999999999987543   5567777777777777 6799999999999876  5666677776666


Q ss_pred             HhccCCc--HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC---CC
Q 007998          220 CGHLGAW--KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH---GD  292 (582)
Q Consensus       220 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~---g~  292 (582)
                      +.+.+..  +++..+.+.+++...+ +..+|+....++.+.|+++++++.++++.  ...|..+|+.....+.+.   |.
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~  194 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG  194 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence            6667753  6778888888887643 78899999999999999999999999876  356778898877666554   22


Q ss_pred             h----hHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcC----CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh
Q 007998          293 G----PRALELFEQMGRAGVKPD-DVSYLAALCACNHA----GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR  359 (582)
Q Consensus       293 ~----~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  359 (582)
                      .    +++++...+++..  .|+ ...|+.+...+...    +...++..++.+....+ ..+......|++.|+.
T Consensus       195 ~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        195 LEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             ccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence            2    4566666666654  343 45666666666552    33455666666655422 2234555566666654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.39  E-value=4.2e-05  Score=69.14  Aligned_cols=154  Identities=10%  Similarity=0.115  Sum_probs=112.3

Q ss_pred             HHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 007998          252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG  331 (582)
Q Consensus       252 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a  331 (582)
                      +-.|.+.|+++.+....+.+. .|. .       .|...++.++++..+++..+.. +.|...|..+...|...|++++|
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~-~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A   92 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLA-DPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA   92 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHh-Ccc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            456778888777665554443 221 0       1222566677777777777642 44566788888889999999999


Q ss_pred             HHHHHHHhHcCCccChhhHHhhhhH-HhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998          332 VRLFNSMANCGVKPNMKHYGSVVDL-LGRAGR--LQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLV  406 (582)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  406 (582)
                      ...|++..+.. +.+...+..+..+ |.+.|+  .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus        93 ~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         93 LLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999888743 2356677777775 467777  58999999887 4455 67888888899999999999999999999


Q ss_pred             HcCCCCchhH
Q 007998          407 EMGSNNCGDF  416 (582)
Q Consensus       407 ~~~p~~~~~~  416 (582)
                      ++.|.+..-+
T Consensus       172 ~l~~~~~~r~  181 (198)
T PRK10370        172 DLNSPRVNRT  181 (198)
T ss_pred             hhCCCCccHH
Confidence            9998765444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.35  E-value=0.00011  Score=79.41  Aligned_cols=233  Identities=12%  Similarity=0.082  Sum_probs=143.9

Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007998          142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGV--R-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA  218 (582)
Q Consensus       142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~  218 (582)
                      +...+..|++.|...+++++|.++.+...+  | ....|-.+...+.+.++..++..+  .+.                .
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l----------------~   91 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI----------------D   91 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh----------------h
Confidence            455677888888888888888888775432  2 233444444466666665555444  222                2


Q ss_pred             HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHH
Q 007998          219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRA  296 (582)
Q Consensus       219 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A  296 (582)
                      ......++.....+...+.+.+  .+...+..|..+|-+.|+.++|..+++++.  .+.|+.+.|.+...|+.. +.++|
T Consensus        92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence            2222233333333334444432  234466677888888888888888888765  345677777788788777 88888


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhCCC
Q 007998          297 LELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSVSM  375 (582)
Q Consensus       297 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~  375 (582)
                      ++++.+....               +...+++..+..+|.++....  |+ ...+-.+..            .+....+.
T Consensus       169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~------------ki~~~~~~  219 (906)
T PRK14720        169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIER------------KVLGHREF  219 (906)
T ss_pred             HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHHH------------HHHhhhcc
Confidence            8877776542               455567777777777777632  22 111111111            11122223


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          376 GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       376 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ..-+.++..+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus       220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            3345566667777888888888999999999888888777777777776

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.35  E-value=7.1e-05  Score=70.25  Aligned_cols=54  Identities=13%  Similarity=0.109  Sum_probs=28.4

Q ss_pred             HHHHcCCCHHHHHHHHHHHhH-cCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998          320 CACNHAGLVDDGVRLFNSMAN-CGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV  373 (582)
Q Consensus       320 ~a~~~~g~~~~a~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~  373 (582)
                      ..+.+.|++++|...++...+ ..-.| ....+..+..+|...|++++|.+.++.+
T Consensus       174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l  229 (235)
T TIGR03302       174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL  229 (235)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345555666666666655555 21112 2344555556666666666666555544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.35  E-value=6.9e-05  Score=67.74  Aligned_cols=117  Identities=14%  Similarity=0.087  Sum_probs=51.6

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 007998          318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDV  395 (582)
Q Consensus       318 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~  395 (582)
                      .+....+.|++.+|...+++..... ++|...|+.+.-+|.+.|++++|..-|.+. .+.| +....+.|...+.-.|+.
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~  184 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL  184 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence            3334444444444444444444311 334444444444444444444444444332 2222 333344444444444455


Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHH
Q 007998          396 EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV  435 (582)
Q Consensus       396 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  435 (582)
                      +.|+.++.......+.+..+-..|.-.....|++++|..+
T Consensus       185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         185 EDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             HHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence            5555554444444444444444444444444554444443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.33  E-value=0.00026  Score=69.60  Aligned_cols=177  Identities=15%  Similarity=0.074  Sum_probs=118.1

Q ss_pred             CHHHHHHHHhccc-----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007998          260 LLDKAFEVFDNIK-----CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL  334 (582)
Q Consensus       260 ~~~~A~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~  334 (582)
                      ++.+++..-+.++     ..|+...+...+.+.........+-.++.+-.+.  .-...-|...+. +...|.+++|+..
T Consensus       252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~  328 (484)
T COG4783         252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKL  328 (484)
T ss_pred             HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHH
Confidence            3455555556665     2345555565555444333333333322222211  112233444443 4457888888888


Q ss_pred             HHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      ++.+.+. .+-|........+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|++.+|+.+++.....+|++
T Consensus       329 l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d  407 (484)
T COG4783         329 LQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED  407 (484)
T ss_pred             HHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence            8888763 2345566667778888889999998888877 55665 6677778888888899999999998888888988


Q ss_pred             chhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          413 CGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       413 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      +..|..|+.+|...|+..++...+.++.
T Consensus       408 p~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         408 PNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             chHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            8899888888888888888877776554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.29  E-value=7.1e-06  Score=69.01  Aligned_cols=95  Identities=13%  Similarity=0.022  Sum_probs=83.4

Q ss_pred             hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 007998          348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA  425 (582)
Q Consensus       348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  425 (582)
                      ...-.+...+...|++++|.++|+-. .+.| +...|..|...|...|++++|+..|.++..++|++|.++..++.+|..
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            33334566677899999999999977 4455 788899999999999999999999999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHhC
Q 007998          426 YERWDDVGRVRKAMKNR  442 (582)
Q Consensus       426 ~g~~~~a~~~~~~m~~~  442 (582)
                      .|+.+.|.+.|+.....
T Consensus       116 lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        116 CDNVCYAIKALKAVVRI  132 (157)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            99999999999977643

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.28  E-value=0.00031  Score=74.51  Aligned_cols=107  Identities=14%  Similarity=-0.013  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998          330 DGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVE  407 (582)
Q Consensus       330 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  407 (582)
                      .|...+...++.. ..+...|+.|.- ....|.+.-|.--|-+- -..| ...+|..+...|....+++-|...|.+...
T Consensus       801 ~Ai~c~KkaV~L~-ann~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS  878 (1238)
T KOG1127|consen  801 TAIRCCKKAVSLC-ANNEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS  878 (1238)
T ss_pred             HHHHHHHHHHHHh-hccHHHHHHHHH-hhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence            3444444444311 123334443332 24445555554444322 2233 677788888888888999999999999999


Q ss_pred             cCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998          408 MGSNNCGDFVLLSNLYAAYERWDDVGRVRKA  438 (582)
Q Consensus       408 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  438 (582)
                      ++|.|...+.....+-...|+.-++..+|..
T Consensus       879 LdP~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  879 LDPLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             cCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            9999988887777777788888777777765

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.00033  Score=63.40  Aligned_cols=140  Identities=12%  Similarity=0.052  Sum_probs=95.0

Q ss_pred             HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHH----hhc
Q 007998          285 MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL----GRA  360 (582)
Q Consensus       285 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~  360 (582)
                      ..|...|++++|++......    ..+..  ..=...+.+..+.+-|.+.++.|.+-   -+..+.+.|..++    ...
T Consensus       116 ~i~~~~~~~deAl~~~~~~~----~lE~~--Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg  186 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGE----NLEAA--ALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG  186 (299)
T ss_pred             HHhhcCCChHHHHHHHhccc----hHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence            34666777777777666511    11111  11222344566677777777777751   2233444444443    345


Q ss_pred             CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHH
Q 007998          361 GRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG  433 (582)
Q Consensus       361 g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~  433 (582)
                      +.+.+|.-+|++|  ...|+..+.+....++...|++++|+.+++.++..++++|.+...++-.--..|+-.++.
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~  261 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT  261 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence            6688888888888  356788888888888889999999999999999999988888888887777888766554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.23  E-value=1.5e-05  Score=67.49  Aligned_cols=97  Identities=13%  Similarity=0.139  Sum_probs=73.9

Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            344555666777778888888877765 3334 66777777778888888888888888888888888888888888888


Q ss_pred             hcCCchHHHHHHHHHHhCC
Q 007998          425 AYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       425 ~~g~~~~a~~~~~~m~~~~  443 (582)
                      ..|++++|.+.++...+..
T Consensus        97 ~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        97 ALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HcCCHHHHHHHHHHHHHhc
Confidence            8888888888888776644

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=0.00047  Score=61.96  Aligned_cols=169  Identities=12%  Similarity=0.151  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhccc-CCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007998          247 VCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSL-VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH  324 (582)
Q Consensus       247 ~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  324 (582)
                      +|..++-+...+|+.+.|...++++. .-|.. ..-..-..-+-..|++++|+++++.+.+.. +-|.+++..=+...-.
T Consensus        54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka  132 (289)
T KOG3060|consen   54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA  132 (289)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence            44445555666788888888887765 01221 111111122455788999999999988864 3455667666656666


Q ss_pred             CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHH
Q 007998          325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY---GDVEMAE  399 (582)
Q Consensus       325 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~  399 (582)
                      .|..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..| ++..+..+...+...   .+.+.+.
T Consensus       133 ~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar  211 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR  211 (289)
T ss_pred             cCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            7777777777776666 34678899999999999999999999989887 3345 555666666555433   3788899


Q ss_pred             HHHHHHHHcCCCCchhHH
Q 007998          400 IASRKLVEMGSNNCGDFV  417 (582)
Q Consensus       400 ~~~~~~~~~~p~~~~~~~  417 (582)
                      +.|.+.+++.|.+...+.
T Consensus       212 kyy~~alkl~~~~~ral~  229 (289)
T KOG3060|consen  212 KYYERALKLNPKNLRALF  229 (289)
T ss_pred             HHHHHHHHhChHhHHHHH
Confidence            999999999986544443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.23  E-value=0.0002  Score=64.77  Aligned_cols=158  Identities=15%  Similarity=0.052  Sum_probs=110.8

Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007998          142 DALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA  218 (582)
Q Consensus       142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~  218 (582)
                      |..+ ..+-..+.-.|+-+....+.....   ..|....+..+....+.|++.+|+..|++.....  ++|..+|+.+.-
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHHH
Confidence            3344 445566666777777666665542   2355566667777888888888888888877665  777888888888


Q ss_pred             HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHH
Q 007998          219 ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRA  296 (582)
Q Consensus       219 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A  296 (582)
                      +|.+.|+.++|+.-|.+..+.... +....|.|.-.|.-.|+++.|+.++....  ...|...-..+.......|++++|
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence            888888888888888887776432 56667777777777888888888877543  133666667777777778888887


Q ss_pred             HHHHHHH
Q 007998          297 LELFEQM  303 (582)
Q Consensus       297 ~~~~~~m  303 (582)
                      ..+-..-
T Consensus       222 ~~i~~~e  228 (257)
T COG5010         222 EDIAVQE  228 (257)
T ss_pred             Hhhcccc
Confidence            7766543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.22  E-value=0.0011  Score=72.10  Aligned_cols=233  Identities=11%  Similarity=0.027  Sum_probs=136.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC
Q 007998          109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN  188 (582)
Q Consensus       109 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g  188 (582)
                      ..+..|+..+...+++++|.++.+..++..+ .....|-.+...|.+.++.+++..+             .++.......
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~   97 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL   97 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence            3566666777677777777777776555532 1222333333355556654444333             3444455555


Q ss_pred             ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007998          189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF  268 (582)
Q Consensus       189 ~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~  268 (582)
                      ++.-+..+...|...   .-+...+..+..+|.++|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++
T Consensus        98 ~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~  172 (906)
T PRK14720         98 KWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL  172 (906)
T ss_pred             chhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence            564444445555554   3455677788888888888888888888888876 44788888888888888 888888887


Q ss_pred             hcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC
Q 007998          269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSY-LAALCACNHAGLVDDGVRLFNSMAN-CGVKPN  346 (582)
Q Consensus       269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~  346 (582)
                      .+..            ..|...+++.++.++|.++...  .|+...+ ..++                +.+.. .|...-
T Consensus       173 ~KAV------------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~----------------~ki~~~~~~~~~  222 (906)
T PRK14720        173 KKAI------------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIE----------------RKVLGHREFTRL  222 (906)
T ss_pred             HHHH------------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHH----------------HHHHhhhccchh
Confidence            7664            2256666777888888877764  3443322 2222                22222 122222


Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQ  390 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~  390 (582)
                      ..++--+...|-..++++++.++++.+ ...| |.....-++..|.
T Consensus       223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            333334445555666666666666655 3333 4444444554443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.22  E-value=0.00038  Score=74.73  Aligned_cols=143  Identities=13%  Similarity=0.068  Sum_probs=116.6

Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH-HHHH
Q 007998          241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV-SYLA  317 (582)
Q Consensus       241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~  317 (582)
                      ...++..+-.|.....+.|.+++|+.+++... ..| +...+..++..+.+.+++++|+..+++....  .|+.. ....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence            45568888999999999999999999999875 344 5667888999999999999999999999885  66664 5666


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 007998          318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLL  386 (582)
Q Consensus       318 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll  386 (582)
                      +..++.+.|++++|..+|+++...+ +-+...+..+..++-..|+.++|...|++.  ...|-...|+.++
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL  229 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence            6678889999999999999999832 234678888999999999999999999987  2334455555554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.18  E-value=0.0015  Score=64.37  Aligned_cols=116  Identities=14%  Similarity=0.043  Sum_probs=57.4

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 007998          181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL  260 (582)
Q Consensus       181 i~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~  260 (582)
                      .-.+.+.|++++|+..++.++..-  |-|+.........+.+.++..+|.+.++.++..... .....-.+.++|.+.|+
T Consensus       313 A~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~  389 (484)
T COG4783         313 ALQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGK  389 (484)
T ss_pred             HHHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCC
Confidence            333445555555555555555442  333333444444555555555555555555554211 13444445555555555


Q ss_pred             HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHH
Q 007998          261 LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALEL  299 (582)
Q Consensus       261 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~  299 (582)
                      +++|...++...  .+.|...|..|..+|...|+..++..-
T Consensus       390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence            555555555433  233445555555555555555544433

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.12  E-value=3.4e-06  Score=52.23  Aligned_cols=35  Identities=20%  Similarity=0.460  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCh
Q 007998           74 NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA  108 (582)
Q Consensus        74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  108 (582)
                      ++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            47999999999999999999999999999999873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.12  E-value=0.013  Score=58.57  Aligned_cols=398  Identities=9%  Similarity=0.048  Sum_probs=199.4

Q ss_pred             cchhchHHHHHhcCCCCCHHHHHHHHhcCCC--C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHH
Q 007998           40 FPVRSKIIEFYALSPLNELAYAHALFRQINA--P-STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALK  116 (582)
Q Consensus        40 ~~~~~~~~~li~~y~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  116 (582)
                      |+-..+|+.||.-+....+++++...+++..  | ....|..-|..-....+++....+|.+.+..-.  +...|..-|.
T Consensus        17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~   94 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLS   94 (656)
T ss_pred             CccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHH
Confidence            5444568899987766888889988888752  3 556799999999999999999999999876533  3444554444


Q ss_pred             HHHh-cCChHHHH----HHHHHHH-HcCCCCc-hHHHHHHHHH---------HHhcCCHHHHHHHHhhcCC-C--Ch-hH
Q 007998          117 ACAR-VLALFETL----QIHSHVL-RHGFLAD-ALLGTTLLDV---------YAKVGEIVSAKKVFDEMGV-R--DI-AS  176 (582)
Q Consensus       117 ~~~~-~~~~~~a~----~~~~~~~-~~g~~~~-~~~~~~li~~---------y~~~g~~~~A~~~f~~m~~-~--~~-~~  176 (582)
                      -..+ .++....+    +.|+.++ +.|+++- -.+|+.-++.         |....+++..++++.++.. |  |. ..
T Consensus        95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL  174 (656)
T KOG1914|consen   95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL  174 (656)
T ss_pred             HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence            3322 23333322    3344333 3454332 2345555443         3344467777888887753 2  21 12


Q ss_pred             HHHH------HHHH-------HhCCChhHHHHHHHHHHH--cCCCCCCHHH---------------HHHHHHHHhccCCc
Q 007998          177 WNAL------IAGL-------AQGNLASEAVDLFKRMKM--EGVFKPNEVT---------------VLGALAACGHLGAW  226 (582)
Q Consensus       177 ~~~l------i~~~-------~~~g~~~~A~~~~~~m~~--~g~~~pd~~t---------------~~~ll~a~~~~~~~  226 (582)
                      |+..      |...       -+...+..|.+++++...  .|. .-+..+               |-..|.-=-..+--
T Consensus       175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL-~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~  253 (656)
T KOG1914|consen  175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGL-NRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR  253 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhh-cccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence            3322      2111       123345556666655532  233 222222               11111111000000


Q ss_pred             --------HHHHHHHHHHH-HcCCCCchhHHHH-----HHHHHHhcCCH-------HHHHHHHhccc---CCCCHHHHHH
Q 007998          227 --------KEGDKIHEYIR-EERLDMNVVVCNA-----VIDMYAKCGLL-------DKAFEVFDNIK---CRKSLVTWNT  282 (582)
Q Consensus       227 --------~~a~~~~~~~~-~~~~~~~~~~~~~-----li~~y~~~g~~-------~~A~~~~~~~~---~~~~~~~~~~  282 (582)
                              ....-++++.+ -.+..|++....+     .-+.+...|+.       +++..++++..   ...+...|..
T Consensus       254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~  333 (656)
T KOG1914|consen  254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA  333 (656)
T ss_pred             cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    00001111111 1122232211111     11222233332       23333333222   1112222222


Q ss_pred             HHHHHHhC---CChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhHH
Q 007998          283 MVMAFAVH---GDGPRALELFEQMGRA-GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDLL  357 (582)
Q Consensus       283 li~~~~~~---g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~  357 (582)
                      +..---..   .+.+.....++++... ...|+ .+|...++.-.+..-++.|+.+|.++.+.+..+ ++.++++++.-|
T Consensus       334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~  412 (656)
T KOG1914|consen  334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY  412 (656)
T ss_pred             HHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence            22111111   1244455555555442 12232 355666666666667777777777777754444 666666666655


Q ss_pred             hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-CchhHHHHHHHHHhcCCchHH
Q 007998          358 GRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEM--GSN-NCGDFVLLSNLYAAYERWDDV  432 (582)
Q Consensus       358 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~~~a  432 (582)
                      + .++.+-|.++|+-- ..-+ ++..-...+.-+...++-..+..+|++++..  .|+ ....|..++.--+.-|+.+.+
T Consensus       413 c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si  491 (656)
T KOG1914|consen  413 C-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI  491 (656)
T ss_pred             h-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence            4 45566777777632 2122 3333445566666667777777777777765  222 234666666666677777777


Q ss_pred             HHHHHHHHhC
Q 007998          433 GRVRKAMKNR  442 (582)
Q Consensus       433 ~~~~~~m~~~  442 (582)
                      .++-+++...
T Consensus       492 ~~lekR~~~a  501 (656)
T KOG1914|consen  492 LKLEKRRFTA  501 (656)
T ss_pred             HHHHHHHHHh
Confidence            7776666543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.11  E-value=4.6e-06  Score=51.63  Aligned_cols=34  Identities=41%  Similarity=0.681  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC
Q 007998          278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD  311 (582)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  311 (582)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            3689999999999999999999999999888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.04  E-value=0.00011  Score=73.01  Aligned_cols=122  Identities=12%  Similarity=0.085  Sum_probs=95.8

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 007998          315 YLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY  392 (582)
Q Consensus       315 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~  392 (582)
                      ...++..+...++++.|..+|+++.+..  |+.  ...++..+...++-.+|.+++++. ...| |...+......|...
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            3455666666777888888888877643  443  334677777777778888887765 3334 666777777788899


Q ss_pred             CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      ++++.|+.+++++.+..|.+..+|..|+.+|...|++++|+..++.+.
T Consensus       248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999998775

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.03  E-value=0.00016  Score=71.65  Aligned_cols=125  Identities=14%  Similarity=0.054  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 007998          145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG  224 (582)
Q Consensus       145 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~  224 (582)
                      .-.+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|++++++.....  +-|...+..-...|.+.+
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcC
Confidence            334555666667788888888888877766666677777777788888888888877653  445556666666677777


Q ss_pred             CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc
Q 007998          225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK  272 (582)
Q Consensus       225 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~  272 (582)
                      +.+.|..+.+++.+.. +.+..+|..|..+|.+.|+++.|+..++.++
T Consensus       249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            7788877777777763 2355677777777777777777777777766

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.01  E-value=7.9e-06  Score=50.21  Aligned_cols=33  Identities=24%  Similarity=0.464  Sum_probs=28.4

Q ss_pred             hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCC
Q 007998           74 NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRS  106 (582)
Q Consensus        74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  106 (582)
                      .+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888877

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.96  E-value=0.00024  Score=60.09  Aligned_cols=94  Identities=9%  Similarity=0.033  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHH
Q 007998          211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFA  288 (582)
Q Consensus       211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~  288 (582)
                      .....+...+...|++++|...++.+...+ +.+...+..+...|.+.|++++|...|++..  .+.+...|..+...|.
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            334444455555555555655555555543 2244555555555555666666665555442  1334445555555566


Q ss_pred             hCCChhHHHHHHHHHHh
Q 007998          289 VHGDGPRALELFEQMGR  305 (582)
Q Consensus       289 ~~g~~~~A~~~~~~m~~  305 (582)
                      ..|++++|+..|++..+
T Consensus        97 ~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        97 ALGEPESALKALDLAIE  113 (135)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            66666666666655554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.96  E-value=1.5e-05  Score=48.97  Aligned_cols=33  Identities=39%  Similarity=0.635  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 007998          175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP  208 (582)
Q Consensus       175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p  208 (582)
                      .+||++|.+|++.|+++.|.++|++|.+.|+ +|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv-~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGV-KP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence            5889999999999999999999999998887 76

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.90  E-value=0.0085  Score=54.56  Aligned_cols=154  Identities=15%  Similarity=0.113  Sum_probs=75.0

Q ss_pred             HHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCC
Q 007998          252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH----AGL  327 (582)
Q Consensus       252 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~  327 (582)
                      ...|...|++++|.+...... .-+....+  +..+.+..+.+-|.+.+++|.+-   -+..|.+.|..++.+    .+.
T Consensus       115 a~i~~~~~~~deAl~~~~~~~-~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek  188 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE-NLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK  188 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc-hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence            334555555555555555432 22222221  22233444555555555555542   233444444444432    334


Q ss_pred             HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 007998          328 VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDV-EMAEIASRK  404 (582)
Q Consensus       328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~  404 (582)
                      +.+|.-+|++|.+ ..+|+..+.+-+.-+....|++++|..++++.  ....++.+...++..-...|.. +.-.+...+
T Consensus       189 ~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q  267 (299)
T KOG3081|consen  189 IQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ  267 (299)
T ss_pred             hhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            5556666666554 12455555555555555566666666666554  2222455555555444444433 444555666


Q ss_pred             HHHcCCCC
Q 007998          405 LVEMGSNN  412 (582)
Q Consensus       405 ~~~~~p~~  412 (582)
                      +....|..
T Consensus       268 Lk~~~p~h  275 (299)
T KOG3081|consen  268 LKLSHPEH  275 (299)
T ss_pred             HHhcCCcc
Confidence            66666654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.86  E-value=0.00085  Score=57.46  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=47.9

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh--hhHHhhhhHHhhcCCH
Q 007998          290 HGDGPRALELFEQMGRAGVKPDD----VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM--KHYGSVVDLLGRAGRL  363 (582)
Q Consensus       290 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~  363 (582)
                      .++...+...++.+...  .|+.    .....+...+...|++++|...|+.+......|..  .....|...+...|++
T Consensus        24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            45555555555555543  1221    12222334444555555555555555553211211  1222334444555555


Q ss_pred             HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007998          364 QEACDIVKSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRK  404 (582)
Q Consensus       364 ~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~  404 (582)
                      ++|+..++..+..+ ....+......+...|+.++|...|++
T Consensus       102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55555554432111 223333333444444444444444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.84  E-value=0.001  Score=56.91  Aligned_cols=123  Identities=13%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc--hhHHHHH
Q 007998          177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE---VTVLGALAACGHLGAWKEGDKIHEYIREERLDMN--VVVCNAV  251 (582)
Q Consensus       177 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l  251 (582)
                      |..++..+ ..++...+.+.++.+....  +.+.   .....+...+...|++++|...|+.+......++  ......|
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            33444444 3666677766677776653  2331   2223344556666777777777777766553332  1233345


Q ss_pred             HHHHHhcCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 007998          252 IDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQ  302 (582)
Q Consensus       252 i~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  302 (582)
                      ...+...|++++|...++... .......+......|...|+.++|...|++
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666666777777777776554 112233445555666666666666666654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=0.0031  Score=56.87  Aligned_cols=162  Identities=14%  Similarity=0.119  Sum_probs=124.8

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHh
Q 007998          280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA-LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG  358 (582)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  358 (582)
                      |..++-+....|+.+.|...++++... + |.+.-...+ ..-+...|++++|.++++.+.+.+ +.|..+|-.-+-+.-
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK  131 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence            444556667789999999999998876 3 554322221 112445789999999999999855 456667766666777


Q ss_pred             hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC---CchHHH
Q 007998          359 RAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE---RWDDVG  433 (582)
Q Consensus       359 ~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~  433 (582)
                      ..|+--+|++-+.+.  .+..|...|.-|...|...|+++.|.-.+++++-..|.++..+..++..+.-.|   +.+-++
T Consensus       132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar  211 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR  211 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            778777887766654  344699999999999999999999999999999999999999999999987665   466678


Q ss_pred             HHHHHHHhCCC
Q 007998          434 RVRKAMKNRDV  444 (582)
Q Consensus       434 ~~~~~m~~~~~  444 (582)
                      +.+.+..+...
T Consensus       212 kyy~~alkl~~  222 (289)
T KOG3060|consen  212 KYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHhCh
Confidence            88887776544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.82  E-value=0.00018  Score=55.85  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=71.9

Q ss_pred             HHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 007998          350 YGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE  427 (582)
Q Consensus       350 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  427 (582)
                      +..+...+...|++++|.+.+++. ...| +...+..+...+...++++.|...+++..+..|.++..+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            344566677788888888888765 3334 44667777778888888899999998888888888778888888888888


Q ss_pred             CchHHHHHHHHHHhC
Q 007998          428 RWDDVGRVRKAMKNR  442 (582)
Q Consensus       428 ~~~~a~~~~~~m~~~  442 (582)
                      ++++|...++...+.
T Consensus        83 ~~~~a~~~~~~~~~~   97 (100)
T cd00189          83 KYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            888888888776543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.80  E-value=2.6e-05  Score=59.70  Aligned_cols=78  Identities=13%  Similarity=0.136  Sum_probs=50.4

Q ss_pred             cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHH
Q 007998          360 AGRLQEACDIVKSV----SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRV  435 (582)
Q Consensus       360 ~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~  435 (582)
                      .|++++|+.+++++    +..|+...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            35666666666655    2122444555567777777777777777777 555665656666677777888888888777


Q ss_pred             HHH
Q 007998          436 RKA  438 (582)
Q Consensus       436 ~~~  438 (582)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            764

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.80  E-value=0.075  Score=56.63  Aligned_cols=379  Identities=15%  Similarity=0.078  Sum_probs=198.6

Q ss_pred             CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 007998           56 NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS  132 (582)
Q Consensus        56 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  132 (582)
                      |+.++|..+++...   ..|..+...+-..|.+.++.++|..+|++....  -|+......+..++.+.+++.+-.++--
T Consensus        57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~  134 (932)
T KOG2053|consen   57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAAL  134 (932)
T ss_pred             cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777776543   235566667777777777777777777777653  4556666666777777776666555444


Q ss_pred             HHHHcCCCCchHHHHHHHHHHHhcCC----------HHHHHHHHhhcCCCC--hhH---HHHHHHHHHhCCChhHHHHHH
Q 007998          133 HVLRHGFLADALLGTTLLDVYAKVGE----------IVSAKKVFDEMGVRD--IAS---WNALIAGLAQGNLASEAVDLF  197 (582)
Q Consensus       133 ~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~f~~m~~~~--~~~---~~~li~~~~~~g~~~~A~~~~  197 (582)
                      ++-+. ++.+.+.+=++++.+...-.          +.-|.+.++.+.+.+  ..+   ...-....-..|++++|++++
T Consensus       135 ~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l  213 (932)
T KOG2053|consen  135 QLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFL  213 (932)
T ss_pred             HHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHH
Confidence            44443 23344444445555543321          233555555554332  100   111112234566777777777


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----------------cCCH
Q 007998          198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK----------------CGLL  261 (582)
Q Consensus       198 ~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----------------~g~~  261 (582)
                      ..=......+-+...-+--+..+...+++.+..++-.+++..|.+ |   |...++.+.+                .+.+
T Consensus       214 ~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l  289 (932)
T KOG2053|consen  214 AITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSL  289 (932)
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhH
Confidence            433322221334444445566666777777777777777776643 2   3333332221                1112


Q ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHH---HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007998          262 DKAFEVFDNIKCRKSLVTWNTMVMAF---AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSM  338 (582)
Q Consensus       262 ~~A~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~  338 (582)
                      +...+..++......-..|-+-+.++   -.-|+.+++...|-+-  -|-+|   .+..=+..|...=..+.-..++...
T Consensus       290 ~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l  364 (932)
T KOG2053|consen  290 DECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKL  364 (932)
T ss_pred             HHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHh
Confidence            22222222111011111222222222   2345555554443321  12233   2223333444444445555555555


Q ss_pred             hHcCCccChh-------hHHhhhhHHhhcCCHH-----HHHHHHHhC------C------CCCCH---------HHHHHH
Q 007998          339 ANCGVKPNMK-------HYGSVVDLLGRAGRLQ-----EACDIVKSV------S------MGTDM---------VLWQTL  385 (582)
Q Consensus       339 ~~~~~~~~~~-------~~~~li~~~~~~g~~~-----~A~~~~~~~------~------~~p~~---------~~~~~l  385 (582)
                      ...  .++..       -+.+.+....-.|.++     .-..++++.      +      .-|..         .+-+.|
T Consensus       365 ~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~L  442 (932)
T KOG2053|consen  365 VLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHL  442 (932)
T ss_pred             hcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHH
Confidence            441  12211       1233333333334221     122222211      1      11221         134677


Q ss_pred             HHHHHhcCCh---HHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 007998          386 LGACQLYGDV---EMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP  448 (582)
Q Consensus       386 l~~~~~~g~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  448 (582)
                      +..|.+.++.   -+|+.+++..+...|.|...-..|+.+|.-.|-+..|..+++.+.-+.|..++
T Consensus       443 id~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT  508 (932)
T KOG2053|consen  443 IDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT  508 (932)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence            7888888765   56777788888888999999999999999999999999999998877776554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.79  E-value=0.00049  Score=56.49  Aligned_cols=98  Identities=14%  Similarity=0.038  Sum_probs=49.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhHcC-Ccc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 007998          317 AALCACNHAGLVDDGVRLFNSMANCG-VKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGAC  389 (582)
Q Consensus       317 ~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~  389 (582)
                      .+...+...|++++|...|..+.... -.+ ....+..+..++.+.|++++|.+.++.+ ...|+    ..++..+..++
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~   86 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL   86 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence            33444445555555555555555411 001 1223334555555555555555555544 11121    34455555566


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCch
Q 007998          390 QLYGDVEMAEIASRKLVEMGSNNCG  414 (582)
Q Consensus       390 ~~~g~~~~a~~~~~~~~~~~p~~~~  414 (582)
                      ...|+.+.|...++++++..|+++.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        87 QELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHhCChHHHHHHHHHHHHHCcCChh
Confidence            6666666666666666666665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.77  E-value=0.00033  Score=57.51  Aligned_cols=97  Identities=13%  Similarity=-0.004  Sum_probs=81.2

Q ss_pred             hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHH
Q 007998          348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLL  419 (582)
Q Consensus       348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l  419 (582)
                      .++..++..+.+.|++++|.+.++.+ ...|+    ...+..+...+...|+++.|...++++....|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            34556778889999999999999887 22333    3566778889999999999999999999998874   5678899


Q ss_pred             HHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          420 SNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       420 ~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      +.++.+.|++++|.+.++.+.+...
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCc
Confidence            9999999999999999999987654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.76  E-value=7.7e-05  Score=54.58  Aligned_cols=65  Identities=18%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC-CchHHHHHHHHHHhC
Q 007998          378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE-RWDDVGRVRKAMKNR  442 (582)
Q Consensus       378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~  442 (582)
                      ++.+|..+...+...|++++|+..|+++++.+|+++..+..++.+|...| ++++|.+.+++..+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            56789999999999999999999999999999999999999999999999 799999999887653

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.74  E-value=0.00047  Score=68.63  Aligned_cols=98  Identities=13%  Similarity=0.079  Sum_probs=51.5

Q ss_pred             HHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007998          321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMA  398 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a  398 (582)
                      .....|++++|...|+++++.. +.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++|
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence            3444556666666666665522 123344445555555555665555555544 3333 344555555555555555666


Q ss_pred             HHHHHHHHHcCCCCchhHHHH
Q 007998          399 EIASRKLVEMGSNNCGDFVLL  419 (582)
Q Consensus       399 ~~~~~~~~~~~p~~~~~~~~l  419 (582)
                      +..|+++++++|+++.....+
T Consensus        90 ~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         90 KAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHhCCCCHHHHHHH
Confidence            666655555555555444433

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.71  E-value=4.2e-05  Score=45.70  Aligned_cols=31  Identities=29%  Similarity=0.611  Sum_probs=24.6

Q ss_pred             hHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 007998          175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGV  205 (582)
Q Consensus       175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  205 (582)
                      ++||++|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4688888888888888888888888877663

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.71  E-value=3.9e-05  Score=45.83  Aligned_cols=31  Identities=13%  Similarity=0.243  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHcCCCchHHHHHHHHHHhCCC
Q 007998           74 NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH  104 (582)
Q Consensus        74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  104 (582)
                      ++||++|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            4788888888888888888888888887763

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.64  E-value=0.00013  Score=52.69  Aligned_cols=59  Identities=20%  Similarity=0.176  Sum_probs=44.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          385 LLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      +...+...|++++|+..|+++++.+|+++..+..++.++...|++++|...+++..+..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            34566777888888888888888888877888888888888888888888887776543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.57  E-value=0.0022  Score=56.69  Aligned_cols=131  Identities=12%  Similarity=0.134  Sum_probs=82.7

Q ss_pred             CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhh
Q 007998          276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD--DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV  353 (582)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  353 (582)
                      ....+..+...+...|++++|+..|++..+....|.  ...+..+...+.+.|++++|...+++..... +.+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            344566777777778888888888888776433222  2456667777777888888888887777632 1234445555


Q ss_pred             hhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998          354 VDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER  428 (582)
Q Consensus       354 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  428 (582)
                      ..+|...|+...+..-++..                  ...++.|.+.++++.+.+|++   |..+...+...|+
T Consensus       113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            56666666655544322211                  112677888888888888865   5566666665554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.57  E-value=0.0013  Score=65.52  Aligned_cols=101  Identities=17%  Similarity=0.066  Sum_probs=80.4

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC
Q 007998          283 MVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG  361 (582)
Q Consensus       283 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  361 (582)
                      ....+...|++++|+..|++.++.  .| +...|..+..++...|++++|...+++++... +.+...|..+..+|...|
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            355677889999999999999985  44 45677888889999999999999999999843 235677888899999999


Q ss_pred             CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 007998          362 RLQEACDIVKSV-SMGTDMVLWQTLL  386 (582)
Q Consensus       362 ~~~~A~~~~~~~-~~~p~~~~~~~ll  386 (582)
                      ++++|...|++. .+.|+......++
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l  110 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLI  110 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999886 5556544444444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.56  E-value=0.00053  Score=63.42  Aligned_cols=91  Identities=18%  Similarity=0.126  Sum_probs=64.0

Q ss_pred             HHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007998          322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~  399 (582)
                      ..+.+++++|...|.++++.. +-|...|..-..+|.+.|.++.|.+-.+.. .+.| -..+|..|..+|...|++++|+
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~  169 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI  169 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence            456777888888888777632 234455555667777888877777766654 5555 3567777777788888888888


Q ss_pred             HHHHHHHHcCCCCc
Q 007998          400 IASRKLVEMGSNNC  413 (582)
Q Consensus       400 ~~~~~~~~~~p~~~  413 (582)
                      +.|++.++++|++.
T Consensus       170 ~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  170 EAYKKALELDPDNE  183 (304)
T ss_pred             HHHHhhhccCCCcH
Confidence            88888888888775

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.56  E-value=0.00096  Score=59.04  Aligned_cols=95  Identities=12%  Similarity=0.039  Sum_probs=66.6

Q ss_pred             hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998          348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL  422 (582)
Q Consensus       348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  422 (582)
                      ..+..+...|.+.|++++|...|++. ...|+    ...|..+...+...|+++.|...++++++..|.++..+..++.+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            34555556666667777777766654 21221    35677788888888999999999999988888888888888888


Q ss_pred             HHhcCC--------------chHHHHHHHHHHhC
Q 007998          423 YAAYER--------------WDDVGRVRKAMKNR  442 (582)
Q Consensus       423 ~~~~g~--------------~~~a~~~~~~m~~~  442 (582)
                      |...|+              +++|.+++++....
T Consensus       116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~  149 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL  149 (172)
T ss_pred             HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence            887776              45556666555543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.54  E-value=0.099  Score=50.86  Aligned_cols=121  Identities=17%  Similarity=0.209  Sum_probs=85.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH
Q 007998          249 NAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV  328 (582)
Q Consensus       249 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~  328 (582)
                      +..+.-+...|+...|.++-.+.. -||-.-|-..+.+|+..+++++-.++...    .-.  ..-|-.++.+|.+.|+.
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~Fk-v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~~~~~~~  253 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEFK-VPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEACLKYGNK  253 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHcC-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHHHHCCCH
Confidence            334555667788888888888888 78888888889999999998877765432    122  36677888888888888


Q ss_pred             HHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007998          329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGAC  389 (582)
Q Consensus       329 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~  389 (582)
                      .+|..+...+.          +..-+.+|.++|++.+|.+.--+..   |...+..+..-|
T Consensus       254 ~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~  301 (319)
T PF04840_consen  254 KEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC  301 (319)
T ss_pred             HHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence            88888876621          1345678888888888877655443   444444444433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.003  Score=60.91  Aligned_cols=165  Identities=10%  Similarity=0.069  Sum_probs=115.3

Q ss_pred             CCHHHHHHHH-HHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHhHcCCccChhh--
Q 007998          275 KSLVTWNTMV-MAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC--ACNHAGLVDDGVRLFNSMANCGVKPNMKH--  349 (582)
Q Consensus       275 ~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~~~~~~~~~~~~~--  349 (582)
                      |...+|..+- .++...|++++|.+.--...+.  .++. .+...++  ++-..++.+.+...|++.+..  .|+-..  
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk  240 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSK  240 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHH
Confidence            3344554443 4566778888888777666553  2221 2222222  334567788888888887763  343221  


Q ss_pred             -----------HHhhhhHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          350 -----------YGSVVDLLGRAGRLQEACDIVKSV-SMGT-----DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       350 -----------~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                                 +..=..-..+.|++.+|.+.+.+. .+.|     +...|.....+..+.|+.++|+.--+++++++|.-
T Consensus       241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy  320 (486)
T KOG0550|consen  241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY  320 (486)
T ss_pred             hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence                       111123356789999999999875 4444     56667777778889999999999999999999988


Q ss_pred             chhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          413 CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       413 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ...|..-++++...++|++|.+-++...+...
T Consensus       321 ikall~ra~c~l~le~~e~AV~d~~~a~q~~~  352 (486)
T KOG0550|consen  321 IKALLRRANCHLALEKWEEAVEDYEKAMQLEK  352 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            88999999999999999999999998776543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.0023  Score=59.70  Aligned_cols=105  Identities=10%  Similarity=0.040  Sum_probs=87.8

Q ss_pred             ccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCchhHHH
Q 007998          344 KPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY---GDVEMAEIASRKLVEMGSNNCGDFVL  418 (582)
Q Consensus       344 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~  418 (582)
                      +-|...|..|...|.+.|+++.|..-|.+. .+.| ++..+..+..++...   ....++..++++++.++|.|..+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            457889999999999999999999999876 4444 666777777665433   35789999999999999999999999


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 007998          419 LSNLYAAYERWDDVGRVRKAMKNRDVKKVP  448 (582)
Q Consensus       419 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  448 (582)
                      |+..+...|++.+|...++.|.+......|
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            999999999999999999999987654433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.50  E-value=0.00028  Score=50.81  Aligned_cols=61  Identities=16%  Similarity=0.149  Sum_probs=50.9

Q ss_pred             hhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998          353 VVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC  413 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  413 (582)
                      +...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...|+++++..|++|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            456688899999999999987 4456 678888999999999999999999999999999764

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.50  E-value=0.0044  Score=64.59  Aligned_cols=66  Identities=15%  Similarity=0.103  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      +...|..+.-.....|++++|...++++++++| +...|..++.++...|+.++|...+++....+.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            445566665555556777777777777777777 456777777777777777777777776665544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.44  E-value=0.005  Score=52.08  Aligned_cols=93  Identities=12%  Similarity=0.060  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY  255 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y  255 (582)
                      ....+...+.+.|++++|..+|+.+..-.  +-+..-|-.+..+|...|++++|...|.......+ .|+..+-.+..+|
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~  113 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence            33344444555555666655555555443  34444455555555555555555555555555542 2444555555555


Q ss_pred             HhcCCHHHHHHHHhcc
Q 007998          256 AKCGLLDKAFEVFDNI  271 (582)
Q Consensus       256 ~~~g~~~~A~~~~~~~  271 (582)
                      .+.|+.+.|++.|+..
T Consensus       114 L~lG~~~~A~~aF~~A  129 (157)
T PRK15363        114 LACDNVCYAIKALKAV  129 (157)
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            5555555555555543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.42  E-value=0.0017  Score=50.15  Aligned_cols=88  Identities=17%  Similarity=0.175  Sum_probs=41.3

Q ss_pred             HHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007998          322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~  399 (582)
                      +...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+++.|.
T Consensus        10 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~   88 (100)
T cd00189          10 YYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEAL   88 (100)
T ss_pred             HHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHH
Confidence            333444444444444443311 111133333444444455555555555443 1122 3345555555666666666666


Q ss_pred             HHHHHHHHcCC
Q 007998          400 IASRKLVEMGS  410 (582)
Q Consensus       400 ~~~~~~~~~~p  410 (582)
                      ..+++..+..|
T Consensus        89 ~~~~~~~~~~~   99 (100)
T cd00189          89 EAYEKALELDP   99 (100)
T ss_pred             HHHHHHHccCC
Confidence            66666655554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.40  E-value=0.0017  Score=57.22  Aligned_cols=93  Identities=9%  Similarity=-0.141  Sum_probs=72.0

Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN  421 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  421 (582)
                      ...|..+...+...|++++|...|++. ...|+    ..+|..+...+...|++++|+..++++++..|.....+..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            445566667777788888888888765 22222    3578888899999999999999999999999988888888888


Q ss_pred             HHH-------hcCCchHHHHHHHHH
Q 007998          422 LYA-------AYERWDDVGRVRKAM  439 (582)
Q Consensus       422 ~~~-------~~g~~~~a~~~~~~m  439 (582)
                      +|.       ..|++++|...+++.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHH
Confidence            888       777877666655543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.007  Score=54.87  Aligned_cols=127  Identities=10%  Similarity=-0.020  Sum_probs=59.8

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-----hHHHHHHHH
Q 007998           77 NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD-----ALLGTTLLD  151 (582)
Q Consensus        77 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~  151 (582)
                      +.++..+.-.|.+.-.+.++.+.++...+-++.....+.+.-.+.||.+.|...++.+.+..-..|     ..+......
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            344444444555555555555555554444555555555555555555555555555444221222     222222223


Q ss_pred             HHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 007998          152 VYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKME  203 (582)
Q Consensus       152 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  203 (582)
                      .|.-.+++..|...|++++..   |++.-|.-.-...-.|+..+|++....|++.
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            344445555555555554432   3333333333333345555555555555544

>PRK15331 chaperone protein SicA; Provisional

Probab=97.38  E-value=0.0011  Score=56.35  Aligned_cols=88  Identities=13%  Similarity=0.038  Sum_probs=76.9

Q ss_pred             hhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchH
Q 007998          354 VDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD  431 (582)
Q Consensus       354 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  431 (582)
                      ..-+...|++++|..+|+-+ -..| |...|..|...|...++++.|...|.....++++||.++...+.+|...|+.+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence            33455789999999999876 2223 677889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 007998          432 VGRVRKAMKN  441 (582)
Q Consensus       432 a~~~~~~m~~  441 (582)
                      |...|+...+
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            9999998776

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.38  E-value=0.0045  Score=54.91  Aligned_cols=118  Identities=20%  Similarity=0.204  Sum_probs=76.3

Q ss_pred             CCCHHHHHHHHHHHhc-----cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHH
Q 007998          207 KPNEVTVLGALAACGH-----LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWN  281 (582)
Q Consensus       207 ~pd~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~  281 (582)
                      ..|..+|..++..+.+     .|..+-....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+-         
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------  112 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------  112 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence            4566667666666643     35666667777788888888899999998887654 2221 111222111         


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHhH
Q 007998          282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLV-DDGVRLFNSMAN  340 (582)
Q Consensus       282 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~~~~  340 (582)
                         .  -...+-+-|++++++|...|+.||..|+..+++.+.+.+.. .+..++.-.|-+
T Consensus       113 ---~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk  167 (228)
T PF06239_consen  113 ---M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK  167 (228)
T ss_pred             ---c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence               0  11234567899999999999999999999999998766542 333333333333

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.37  E-value=0.0018  Score=60.03  Aligned_cols=97  Identities=20%  Similarity=0.249  Sum_probs=77.7

Q ss_pred             HHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcC
Q 007998          284 VMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAG  361 (582)
Q Consensus       284 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g  361 (582)
                      ..-+.+.+++.+|+..|.+.++.  .| |.+-|..-..+|++.|.++.|++-.+..+..  .|. ...|..|..+|...|
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccC
Confidence            34567889999999999999884  55 4566777778999999999999888888763  343 578999999999999


Q ss_pred             CHHHHHHHHHhC-CCCCCHHHHHH
Q 007998          362 RLQEACDIVKSV-SMGTDMVLWQT  384 (582)
Q Consensus       362 ~~~~A~~~~~~~-~~~p~~~~~~~  384 (582)
                      ++++|.+.|++. .+.|+-.+|..
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~  187 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKS  187 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHH
Confidence            999999999876 77887666543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.36  E-value=0.00061  Score=50.39  Aligned_cols=58  Identities=9%  Similarity=-0.010  Sum_probs=48.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       387 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ..+.+.++++.|.++++++++++|+++..+...+.+|...|++++|...++...+.+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            4677888888888888888888888888888888888888888888888888876543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.36  E-value=0.00028  Score=51.35  Aligned_cols=53  Identities=17%  Similarity=0.206  Sum_probs=42.6

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       390 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      ...|++++|++.|+++++.+|+++.....++.+|.+.|++++|..+++++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35688888888888888888888888888888888888888888888766543

...

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.36  E-value=0.0091  Score=57.32  Aligned_cols=133  Identities=12%  Similarity=0.166  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhH
Q 007998          278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA-CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL  356 (582)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  356 (582)
                      .+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            467788888888888888888888887542 2222333333333 33457777799999998882 34567778888899


Q ss_pred             HhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          357 LGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       357 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      +.+.|+.+.|..+|++. ..-|.    ...|...+.--.+.|+++....+.+++.+.-|.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            99999999999999876 32333    3599999999999999999999999999988864

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.31  E-value=0.18  Score=48.57  Aligned_cols=92  Identities=14%  Similarity=0.173  Sum_probs=45.1

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhcCC-----CCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhH--cCCccC--hhhHH
Q 007998          282 TMVMAFAVHGDGPRALELFEQMGRAGV-----KPDDV-SYLAALCACNHAGLVDDGVRLFNSMAN--CGVKPN--MKHYG  351 (582)
Q Consensus       282 ~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~--~~~~~~--~~~~~  351 (582)
                      .+...+.+.|++++|+++|++....-.     +++.. .|...+-++...|++..|.+.+++...  .++..+  .....
T Consensus       160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~  239 (282)
T PF14938_consen  160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE  239 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence            344556666666666666666554321     11121 222333345556777777777776664  122222  23344


Q ss_pred             hhhhHHhh--cCCHHHHHHHHHhC
Q 007998          352 SVVDLLGR--AGRLQEACDIVKSV  373 (582)
Q Consensus       352 ~li~~~~~--~g~~~~A~~~~~~~  373 (582)
                      .|++++-.  ...+.+|..-|+.+
T Consensus       240 ~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  240 DLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHhCCHHHHHHHHHHHccc
Confidence            45555533  34456666666665

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.29  E-value=0.19  Score=48.56  Aligned_cols=274  Identities=15%  Similarity=0.140  Sum_probs=170.6

Q ss_pred             cCCHHHHHHHHhhcC---CCChhHHHHHHH--HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHH
Q 007998          156 VGEIVSAKKVFDEMG---VRDIASWNALIA--GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD  230 (582)
Q Consensus       156 ~g~~~~A~~~f~~m~---~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~  230 (582)
                      .||-..|+++-.+..   ..|....--++.  +-.-.|+++.|.+-|+.|....  ..-..-+..+.-...+.|+.+.|+
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr  174 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAAR  174 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHH
Confidence            355555555544332   223333333332  2234678888888888886431  111122344444556778888888


Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCCHHH--HHHHHHHHHh---CCChhHHHHHHH
Q 007998          231 KIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKSLVT--WNTMVMAFAV---HGDGPRALELFE  301 (582)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~--~~~li~~~~~---~g~~~~A~~~~~  301 (582)
                      ++-+..-..-.. -...+.+.+...+..|+++.|+++.+.-.    ..+|+.-  --.|+.+-+.   .-+...|...-.
T Consensus       175 ~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~  253 (531)
T COG3898         175 HYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL  253 (531)
T ss_pred             HHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            887776654322 35667788888999999999999988543    3555432  2233333221   234445555444


Q ss_pred             HHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHH--H--HHHHhCCCC
Q 007998          302 QMGRAGVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA--C--DIVKSVSMG  376 (582)
Q Consensus       302 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A--~--~~~~~~~~~  376 (582)
                      +..+  +.||.+ .-.....++.+.|++.++-.+++.+-+....|++  +.  .-.+.+.|+....  .  +-++.|  +
T Consensus       254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdta~dRlkRa~~L~sl--k  325 (531)
T COG3898         254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDTALDRLKRAKKLESL--K  325 (531)
T ss_pred             HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCcHHHHHHHHHHHHhc--C
Confidence            4443  577764 3444566888999999999999999886544543  32  2234556653322  1  123333  4


Q ss_pred             C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHHh
Q 007998          377 T-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY-ERWDDVGRVRKAMKN  441 (582)
Q Consensus       377 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~  441 (582)
                      | +..+--.+..+....|++..|..-.+.+....| ..+.|.+|.++-... |+-.++++.+-+..+
T Consensus       326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            4 566777778888899999999999999999999 557899999887644 988888887765543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.29  E-value=0.0053  Score=58.95  Aligned_cols=127  Identities=13%  Similarity=0.084  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA-CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM  254 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  254 (582)
                      +|..++...-+.+..+.|..+|.+.++.+  ..+...|...... +...++.+.|..+|+..++. +..+...|...++.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            45555665555555666666666665433  2233333333332 22234445566666666554 34455556666666


Q ss_pred             HHhcCCHHHHHHHHhccc-CCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998          255 YAKCGLLDKAFEVFDNIK-CRK----SLVTWNTMVMAFAVHGDGPRALELFEQMGR  305 (582)
Q Consensus       255 y~~~g~~~~A~~~~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (582)
                      +.+.|+.+.|+.+|++.. .-+    ....|...+.-=.+.|+.+.+.++.+++.+
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            666666666666666543 111    123555555555555555555555555554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.27  E-value=0.00068  Score=51.77  Aligned_cols=80  Identities=14%  Similarity=0.202  Sum_probs=36.0

Q ss_pred             CCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHH
Q 007998          290 HGDGPRALELFEQMGRAGV-KPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD  368 (582)
Q Consensus       290 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  368 (582)
                      .|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4555666666666555321 11223333345555555666666555555 22110 111222233455555555555555


Q ss_pred             HHH
Q 007998          369 IVK  371 (582)
Q Consensus       369 ~~~  371 (582)
                      .++
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.26  E-value=0.026  Score=48.59  Aligned_cols=132  Identities=9%  Similarity=-0.019  Sum_probs=96.4

Q ss_pred             CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC---CHHHHH
Q 007998          308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT---DMVLWQ  383 (582)
Q Consensus       308 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~  383 (582)
                      ..|+...-..|..+....|+..+|...|++...--+.-|....-.+..+....+++.+|...++++ ...|   ++...-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            356666666777888888888888888888776333456666667777777888888888888776 2222   233344


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       384 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      .+...+...|+++.|+..|+.++.--| ++..-......+.++|+.+++..-+..+.
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            566788889999999999999999887 55666778888999998887765444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.22  E-value=0.11  Score=48.67  Aligned_cols=67  Identities=7%  Similarity=-0.118  Sum_probs=41.2

Q ss_pred             ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHH---HHHHHHHhccCCcHHHHHHHHHHHHcCC
Q 007998          173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV---LGALAACGHLGAWKEGDKIHEYIREERL  241 (582)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~---~~ll~a~~~~~~~~~a~~~~~~~~~~~~  241 (582)
                      +...+-.....+.+.|++++|++.|+++...-  +-+..+.   ..+..++.+.+++++|...+++.++..+
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P  100 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP  100 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            33334444555667788888888888877653  2222222   3445566777777777777777776543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.19  E-value=0.00041  Score=50.50  Aligned_cols=58  Identities=16%  Similarity=0.142  Sum_probs=30.5

Q ss_pred             hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998          359 RAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF  416 (582)
Q Consensus       359 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  416 (582)
                      ..|++++|.++|+++ ...| +...+..+..+|...|++++|..+++++...+|+++..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            345555555555554 2223 455555555566666666666666666666655544333

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.19  E-value=0.0037  Score=60.16  Aligned_cols=256  Identities=12%  Similarity=0.026  Sum_probs=153.8

Q ss_pred             HHHhCCChhHHHHHHHHHHHcCCCCCCHHH----HHHHHHHHhccCCcHHHHHHHHHHHH----cCCC-CchhHHHHHHH
Q 007998          183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVT----VLGALAACGHLGAWKEGDKIHEYIRE----ERLD-MNVVVCNAVID  253 (582)
Q Consensus       183 ~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~  253 (582)
                      -+++.|+....+.+|+..++.|  ..|..|    |..+.++|.-++++++|.++|..=+-    .|-. -.......|.+
T Consensus        26 RLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            3678888888888888888887  455444    55566778888888888888764221    1100 01112223344


Q ss_pred             HHHhcCCHHHHHHHHhc-c------c-CCCCHHHHHHHHHHHHhCCC--------------------hhHHHHHHHHHHh
Q 007998          254 MYAKCGLLDKAFEVFDN-I------K-CRKSLVTWNTMVMAFAVHGD--------------------GPRALELFEQMGR  305 (582)
Q Consensus       254 ~y~~~g~~~~A~~~~~~-~------~-~~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~  305 (582)
                      .+--.|.+++|.-.-.+ +      . .......+..+...|...|+                    ++.|.+.|.+=.+
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            44445566665432211 1      1 00122334445555544332                    2233444433111


Q ss_pred             ----cCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH----cCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC--
Q 007998          306 ----AGVK-PDDVSYLAALCACNHAGLVDDGVRLFNSMAN----CGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV--  373 (582)
Q Consensus       306 ----~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~--  373 (582)
                          .|-. .-...|..|...|.-.|+++.|+...+.-..    +|-.. ....+..+..++.-.|+++.|.+.|+..  
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence                1100 0113455566666667889999887765433    33222 2356777888888899999999888743  


Q ss_pred             -----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C--CCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          374 -----SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKLVEM----G--SNNCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       374 -----~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                           +.+ ....+-.+|.+.|.-..+++.|+..+.+-+..    +  .....++.+|+++|...|..+.|..+.+.-.
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence                 211 24456667888888888899999988875442    2  2345789999999999999999988876554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.18  E-value=0.32  Score=49.10  Aligned_cols=414  Identities=12%  Similarity=0.072  Sum_probs=232.6

Q ss_pred             ccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC--CCChhHHHHHHHHHHc-CCCchH
Q 007998           16 AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN--APSTNDFNAVLRGLAH-SSKPTN   91 (582)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~-~g~~~~   91 (582)
                      .+..+..|...++++..=      |+....|..-|..-.+ .+++...++|.+.-  .-++..|..-|+---+ +|+...
T Consensus        32 t~~~~~~R~~YEq~~~~F------P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~  105 (656)
T KOG1914|consen   32 TQPIDKVRETYEQLVNVF------PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFG  105 (656)
T ss_pred             cCCHHHHHHHHHHHhccC------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcch
Confidence            445677888888886532      2222224566666556 99999999999864  3478889888865433 233333


Q ss_pred             ----HHHHHHHHH-hCCCCCChh-HHHHHH---HH------HHhcCChHHHHHHHHHHHHcCCCCchHHHHH------HH
Q 007998           92 ----AVLWYRQML-RGSHRSDAL-TCSFAL---KA------CARVLALFETLQIHSHVLRHGFLADALLGTT------LL  150 (582)
Q Consensus        92 ----A~~~~~~m~-~~g~~p~~~-~~~~ll---~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~------li  150 (582)
                          -.+.|+-.+ +-|..+-.. .|+.-+   ..      +....+++..+.+++.++..-+..=...|+-      =|
T Consensus       106 ~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~I  185 (656)
T KOG1914|consen  106 YREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEI  185 (656)
T ss_pred             HHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHH
Confidence                233343333 345444332 333333   32      2233456667777877765432211122221      11


Q ss_pred             HHH-------HhcCCHHHHHHHHhhcCC------C---------------ChhHHHHHHHHHHhCCCh--------hHHH
Q 007998          151 DVY-------AKVGEIVSAKKVFDEMGV------R---------------DIASWNALIAGLAQGNLA--------SEAV  194 (582)
Q Consensus       151 ~~y-------~~~g~~~~A~~~f~~m~~------~---------------~~~~~~~li~~~~~~g~~--------~~A~  194 (582)
                      +..       -+...+-.|+++++++..      +               .+..|-.+|.-=..++--        ....
T Consensus       186 N~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~  265 (656)
T KOG1914|consen  186 NIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVM  265 (656)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence            111       122345556666655420      0               112354444422211111        1112


Q ss_pred             HHHHHH-HHcCCCCCCHHH-HH----HHHHHHhccCC-------cHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--
Q 007998          195 DLFKRM-KMEGVFKPNEVT-VL----GALAACGHLGA-------WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG--  259 (582)
Q Consensus       195 ~~~~~m-~~~g~~~pd~~t-~~----~ll~a~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--  259 (582)
                      -.+++. .--+. .|+..- +.    ..-..+...|+       -+++..+++..+..-...+..+|..+.+.--..-  
T Consensus       266 yayeQ~ll~l~~-~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~  344 (656)
T KOG1914|consen  266 YAYEQCLLYLGY-HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDD  344 (656)
T ss_pred             HHHHHHHHHHhc-CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhccc
Confidence            222222 22233 333221 11    11122333343       3455556665554433334445544443221111  


Q ss_pred             -CHHHHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHH
Q 007998          260 -LLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRL  334 (582)
Q Consensus       260 -~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~  334 (582)
                       ..+.....++++.   ...-..+|..++..-.+..-.+.|..+|.+..+.+..+ +.....+++.-++ .++.+-|.++
T Consensus       345 n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrI  423 (656)
T KOG1914|consen  345 NKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRI  423 (656)
T ss_pred             chhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence             2344444554443   12233467778888888888999999999999998888 4556667776554 6899999999


Q ss_pred             HHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998          335 FNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV---SMGT--DMVLWQTLLGACQLYGDVEMAEIASRKLVEM  408 (582)
Q Consensus       335 ~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  408 (582)
                      |+.=.+ +|  -+..--...++-+...++-..|..+|++.   .+.|  ...+|..++.--..-|++..+.++-++....
T Consensus       424 FeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  424 FELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             HHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            998776 54  23344456788888999999999999987   2233  4689999999999999999999999998876


Q ss_pred             CCCC----chhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998          409 GSNN----CGDFVLLSNLYAAYERWDDVGRVRKAM  439 (582)
Q Consensus       409 ~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m  439 (582)
                      -|.+    ...-..+.+.|.-.+.+..-..=++.|
T Consensus       502 f~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l  536 (656)
T KOG1914|consen  502 FPADQEYEGNETALFVDRYGILDLYPCSLDELKFL  536 (656)
T ss_pred             cchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence            6522    123345666666666655444444433

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.16  E-value=0.008  Score=47.23  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHhHcCCccChhhH
Q 007998          280 WNTMVMAFAVHGDGPRALELFEQMGRAGV-KPDDVSYLAALCACNHAG--------LVDDGVRLFNSMANCGVKPNMKHY  350 (582)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~  350 (582)
                      -...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+..        .+-....+|+.|...+++|+.++|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34456666667888888899999998888 889999999888776532        244567788888887888888888


Q ss_pred             HhhhhHHhh
Q 007998          351 GSVVDLLGR  359 (582)
Q Consensus       351 ~~li~~~~~  359 (582)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            888876654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.16  E-value=0.08  Score=49.53  Aligned_cols=175  Identities=10%  Similarity=0.052  Sum_probs=103.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHhccc-CCCCH-HH---HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007998          250 AVIDMYAKCGLLDKAFEVFDNIK-CRKSL-VT---WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH  324 (582)
Q Consensus       250 ~li~~y~~~g~~~~A~~~~~~~~-~~~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  324 (582)
                      .....+.+.|++++|.+.|+.+. ..|+. ..   .-.++.+|.+.+++++|...|++..+.-..-...-+...+.+.+.
T Consensus        37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence            34455566788888888888765 12322 22   234566778888888888888888774211112333333333321


Q ss_pred             --C---------------CCH---HHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 007998          325 --A---------------GLV---DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQT  384 (582)
Q Consensus       325 --~---------------g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  384 (582)
                        .               .+.   ..|...|+.+++               -|=...-..+|...+..+...--..- -.
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~la~~e-~~  180 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRLAKYE-LS  180 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHHHHHH-HH
Confidence              1               111   233344444443               22223333444443333311000001 13


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          385 LLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      +..-|.+.|.+..|..-++.+++.-|+.   +.+...+..+|...|..++|.++...+.
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            4456888999999999999999988764   4577789999999999999999887664

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.14  E-value=0.045  Score=55.92  Aligned_cols=50  Identities=24%  Similarity=0.444  Sum_probs=31.5

Q ss_pred             HHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998          131 HSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK  201 (582)
Q Consensus       131 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  201 (582)
                      ++.+.++|-.|+...   +...++-.|.+.+|-++|.+                  +|....|+++|..|+
T Consensus       623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlR  672 (1081)
T KOG1538|consen  623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLR  672 (1081)
T ss_pred             HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHH
Confidence            344566676666543   44566777888888888765                  455556666665553

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.13  E-value=0.29  Score=47.63  Aligned_cols=109  Identities=14%  Similarity=0.161  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007998          313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY  392 (582)
Q Consensus       313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~  392 (582)
                      .+.+.-+.-|...|+...|.++-.+.   . .|+..-|...+.+|+..++|++-.++...   +.++..|..++.+|...
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY  250 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence            35555666777888888887775554   3 48888899999999999999998887654   33567899999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHH
Q 007998          393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRK  437 (582)
Q Consensus       393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~  437 (582)
                      |+..+|.....++         .+..-..+|.++|+|.+|.+.--
T Consensus       251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~  286 (319)
T PF04840_consen  251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAF  286 (319)
T ss_pred             CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHH
Confidence            9999998888772         22566788899999999987643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.11  E-value=0.021  Score=59.54  Aligned_cols=139  Identities=12%  Similarity=0.058  Sum_probs=102.6

Q ss_pred             CCCHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcC--------CCHHHHHHHHHHHh
Q 007998          274 RKSLVTWNTMVMAFAVHG-----DGPRALELFEQMGRAGVKPDD-VSYLAALCACNHA--------GLVDDGVRLFNSMA  339 (582)
Q Consensus       274 ~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~~~  339 (582)
                      +.|...|...+.+.....     +.+.|+.+|++..+.  .||. ..+..+..++...        .++..+.+...+..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            568889999998865432     367999999999984  6775 3455444433221        12334444444443


Q ss_pred             Hc-CCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998          340 NC-GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG  414 (582)
Q Consensus       340 ~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  414 (582)
                      .. ....+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            31 23345567777777777789999999999987 67789889999999999999999999999999999998874

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.10  E-value=0.02  Score=55.10  Aligned_cols=26  Identities=8%  Similarity=0.047  Sum_probs=17.5

Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHh
Q 007998           76 FNAVLRGLAHSSKPTNAVLWYRQMLR  101 (582)
Q Consensus        76 ~~~li~~~~~~g~~~~A~~~~~~m~~  101 (582)
                      |+.....|-..|++++|.+.|.+..+
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~   63 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAAD   63 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHH
Confidence            34556677777888888888877643

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.09  E-value=0.0072  Score=47.48  Aligned_cols=81  Identities=12%  Similarity=0.042  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCchHH
Q 007998           75 DFNAVLRGLAHSSKPTNAVLWYRQMLRGSH-RSDALTCSFALKACARVL--------ALFETLQIHSHVLRHGFLADALL  145 (582)
Q Consensus        75 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~  145 (582)
                      +-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++..        .+-..+.+|+.|+..++.|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            334566677777999999999999999999 999999999999887542        23456788999999999999999


Q ss_pred             HHHHHHHHHh
Q 007998          146 GTTLLDVYAK  155 (582)
Q Consensus       146 ~~~li~~y~~  155 (582)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999887654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.06  E-value=0.019  Score=57.57  Aligned_cols=119  Identities=13%  Similarity=0.073  Sum_probs=96.0

Q ss_pred             CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc---CCCCHHHHH
Q 007998          207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREER--LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK---CRKSLVTWN  281 (582)
Q Consensus       207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~  281 (582)
                      +.+...+..+++.+....+++.+..++-+.....  ...-..+..++|+.|.+.|..+++..++..=.   .=||..++|
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            6778888888888888888899988888877652  22234455689999999999999999987533   458999999


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 007998          282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA  325 (582)
Q Consensus       282 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  325 (582)
                      .|+..+.+.|++..|.++...|..++...+..|+...+.+|.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999998887777778887777777665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.04  E-value=0.021  Score=46.50  Aligned_cols=107  Identities=18%  Similarity=0.155  Sum_probs=66.9

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC--chhHHHHHHHHH
Q 007998          180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPN--EVTVLGALAACGHLGAWKEGDKIHEYIREERLDM--NVVVCNAVIDMY  255 (582)
Q Consensus       180 li~~~~~~g~~~~A~~~~~~m~~~g~~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y  255 (582)
                      +..++-..|+.++|+.+|++....|. ..+  ...+..+.+++...|++++|..+++........+  +..+...+.-++
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence            45567778888888888888888775 433  2356667777788888888888888777653221  122222334456


Q ss_pred             HhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHH
Q 007998          256 AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA  288 (582)
Q Consensus       256 ~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~  288 (582)
                      ...|+.++|.+.+-... -++...|.--|..|+
T Consensus        86 ~~~gr~~eAl~~~l~~l-a~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEAL-AETLPRYRRAIRFYA  117 (120)
T ss_pred             HHCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            66777777777765544 344445554444443

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.02  E-value=0.013  Score=58.64  Aligned_cols=120  Identities=10%  Similarity=0.007  Sum_probs=94.2

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHc--CCccChhhHHhhhhHHhhcCCHHHHHHHHHhC---CCCCCHHH
Q 007998          307 GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC--GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV---SMGTDMVL  381 (582)
Q Consensus       307 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~  381 (582)
                      +.+.+...+..+++.+....+++++..++.+....  ....-..+..++|+.|...|..++++++++.=   |+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            44557778888888888888899999888888772  22222334458999999999999999999753   88899999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCchhHHHHHHHHHhc
Q 007998          382 WQTLLGACQLYGDVEMAEIASRKLVEMG-SNNCGDFVLLSNLYAAY  426 (582)
Q Consensus       382 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~  426 (582)
                      ++.|+..+.+.|++..|.+++..|...+ .+++.++.+-..++.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999988877665 56777777666666555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.01  E-value=0.0012  Score=48.21  Aligned_cols=64  Identities=16%  Similarity=0.149  Sum_probs=50.8

Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYG-DVEMAEIASRKLVEMGS  410 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p  410 (582)
                      ...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            456667777788888888888888765 4445 5778888888888888 79999999999998887

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.99  E-value=0.017  Score=50.87  Aligned_cols=81  Identities=6%  Similarity=-0.146  Sum_probs=55.6

Q ss_pred             hhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 007998           73 TNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD--ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL  150 (582)
Q Consensus        73 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  150 (582)
                      ...|..+...+...|++++|+..|++.......|.  ..++..+...+...|+.++|.+.++.+++.. +.....++.+.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la  113 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence            44667777777788888888888888876533321  2467777777888888888888888887663 22344455555


Q ss_pred             HHHH
Q 007998          151 DVYA  154 (582)
Q Consensus       151 ~~y~  154 (582)
                      ..|.
T Consensus       114 ~i~~  117 (168)
T CHL00033        114 VICH  117 (168)
T ss_pred             HHHH
Confidence            5555

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.96  E-value=0.0071  Score=53.70  Aligned_cols=89  Identities=22%  Similarity=0.289  Sum_probs=63.2

Q ss_pred             CCCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----------------CCCHHHHH
Q 007998          274 RKSLVTWNTMVMAFAVH-----GDGPRALELFEQMGRAGVKPDDVSYLAALCACNH----------------AGLVDDGV  332 (582)
Q Consensus       274 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----------------~g~~~~a~  332 (582)
                      .+|-.+|..++..|.+.     |..+=....++.|.+-|+.-|..+|+.||+.+=+                -.+-+-|+
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i  123 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI  123 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence            45666666666666543     4555555666777777777777777777776543                23346688


Q ss_pred             HHHHHHhHcCCccChhhHHhhhhHHhhcCC
Q 007998          333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGR  362 (582)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  362 (582)
                      +++++|..+|+-||.+++..|++.+++.+.
T Consensus       124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            889999889999999999988888887664

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.11  Score=47.52  Aligned_cols=236  Identities=12%  Similarity=0.006  Sum_probs=147.8

Q ss_pred             ChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHH-HhcCC-hH-HHHHHHHHHHHcCCCCchHHHHH
Q 007998           72 STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC-ARVLA-LF-ETLQIHSHVLRHGFLADALLGTT  148 (582)
Q Consensus        72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~-~~-~a~~~~~~~~~~g~~~~~~~~~~  148 (582)
                      ...-|+.-+..+++....++|..-++...+.+ .||-+ |..-=..+ .+.|. +. ..+-+|..+.+.-  |+  -+++
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l--gn--pqes  141 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL--GN--PQES  141 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc--CC--cHHH
Confidence            44568888888888888888776666554322 12210 00000000 01111 11 1223444443321  11  2556


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCCC----------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007998          149 LLDVYAKVGEIVSAKKVFDEMGVR----------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA  218 (582)
Q Consensus       149 li~~y~~~g~~~~A~~~f~~m~~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~  218 (582)
                      |+..|.-..-+++-...|+.-..+          -...-+.++..+.-.|.+.-.+.++++.++... +.++...+.+++
T Consensus       142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~-e~~p~L~s~Lgr  220 (366)
T KOG2796|consen  142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYP-EQEPQLLSGLGR  220 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCC-cccHHHHHHHHH
Confidence            666666555555555555443322          223456777778888899999999999998876 778888889999


Q ss_pred             HHhccCCcHHHHHHHHHHHHcCCCCch-----hHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCC
Q 007998          219 ACGHLGAWKEGDKIHEYIREERLDMNV-----VVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHG  291 (582)
Q Consensus       219 a~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g  291 (582)
                      .-.+.|+.+.|..+|+.+.+..-..+.     .+.......|.-.+++..|...|+++.  .+.|++.-|.-.-+..-.|
T Consensus       221 ~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg  300 (366)
T KOG2796|consen  221 ISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG  300 (366)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence            999999999999999988765333333     333344455667788889999998776  3456666666666666688


Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHH
Q 007998          292 DGPRALELFEQMGRAGVKPDDVSYL  316 (582)
Q Consensus       292 ~~~~A~~~~~~m~~~g~~p~~~t~~  316 (582)
                      +..+|++..+.|...  .|...+-.
T Consensus       301 ~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  301 KLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             HHHHHHHHHHHHhcc--CCccchhh
Confidence            999999999999875  45544433

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.91  E-value=0.0041  Score=45.85  Aligned_cols=64  Identities=14%  Similarity=0.176  Sum_probs=52.7

Q ss_pred             hhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998          354 VDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV  417 (582)
Q Consensus       354 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  417 (582)
                      -..|.+.+++++|.++++.+ ...| +...|......+...|+++.|.+.++++++.+|+++....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            35678899999999999887 4445 6777888888999999999999999999999997765443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.90  E-value=0.00096  Score=40.60  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=30.7

Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHH
Q 007998          402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR  434 (582)
Q Consensus       402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  434 (582)
                      |+++++++|+++.+|..|+.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            688999999999999999999999999999863

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.89  E-value=0.007  Score=57.09  Aligned_cols=93  Identities=11%  Similarity=0.005  Sum_probs=52.9

Q ss_pred             HHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHH
Q 007998          350 YGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSN  421 (582)
Q Consensus       350 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~  421 (582)
                      |..-+..+.+.|++++|...|+.+ ...|+    ...+.-+...|...|+++.|...|+++++..|++   +.++..++.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            333334444456666666655554 22222    2344455566666677777777777776665543   344455566


Q ss_pred             HHHhcCCchHHHHHHHHHHhC
Q 007998          422 LYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       422 ~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      +|...|++++|..+++...+.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            666667777777777666544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.87  E-value=0.19  Score=43.50  Aligned_cols=99  Identities=15%  Similarity=0.059  Sum_probs=47.0

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHH
Q 007998          105 RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV-----RDIASWNA  179 (582)
Q Consensus       105 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~  179 (582)
                      -|+...-..|..+....|+..+|...|++...--+..|..+.-.+.++....++...|...++.+.+     +...+.-.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            3444444445555555555555555555555443444555555555555555555555555444321     11222233


Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHc
Q 007998          180 LIAGLAQGNLASEAVDLFKRMKME  203 (582)
Q Consensus       180 li~~~~~~g~~~~A~~~~~~m~~~  203 (582)
                      +.+.|.-.|++.+|..-|+.....
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~  189 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY  189 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh
Confidence            344444444444444444444433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.86  E-value=0.8  Score=48.24  Aligned_cols=339  Identities=12%  Similarity=0.031  Sum_probs=182.5

Q ss_pred             HHHcCCCchHHHHHHHHH--------HhCCCCCChhHHHH-----HHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHH
Q 007998           82 GLAHSSKPTNAVLWYRQM--------LRGSHRSDALTCSF-----ALKACARVLALFETLQIHSHVLRHGFLADALLGTT  148 (582)
Q Consensus        82 ~~~~~g~~~~A~~~~~~m--------~~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  148 (582)
                      ++.+..++++-+.+-+..        ..-|++.+..-|..     +++-+...+.+..|.++-..+-..-..- ..++..
T Consensus       398 ~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~  476 (829)
T KOG2280|consen  398 ASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLE  476 (829)
T ss_pred             cccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHH
Confidence            334445555544444333        23455555544443     3445556677777777766653221111 456666


Q ss_pred             HHHHHHhcCC---HHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CCHHHHHHHHHHH
Q 007998          149 LLDVYAKVGE---IVSAKKVFDEMGV--RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFK---PNEVTVLGALAAC  220 (582)
Q Consensus       149 li~~y~~~g~---~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---pd~~t~~~ll~a~  220 (582)
                      ...-+.+..+   -+.+.++-+++..  .+.++|..+.+-.-+.|+.+-|..+++.=...+..-   .+-.-+...+.-+
T Consensus       477 Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka  556 (829)
T KOG2280|consen  477 WARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA  556 (829)
T ss_pred             HHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence            6666666632   3344445455554  456678888877778888888877765422221100   0112344555666


Q ss_pred             hccCCcHHHHHHHHHHHHcC-----------CCCchhHHHHHHH--------HHHhcCCHHHHHHHHh--ccc----CCC
Q 007998          221 GHLGAWKEGDKIHEYIREER-----------LDMNVVVCNAVID--------MYAKCGLLDKAFEVFD--NIK----CRK  275 (582)
Q Consensus       221 ~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~li~--------~y~~~g~~~~A~~~~~--~~~----~~~  275 (582)
                      ...|+.+....++-.+...-           .+.....|.-++.        .+.+.++..++...|.  ...    ..+
T Consensus       557 ies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~  636 (829)
T KOG2280|consen  557 IESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEG  636 (829)
T ss_pred             HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcc
Confidence            67777777666665554321           1111222222221        0111222222222221  100    011


Q ss_pred             CHHHHHHHHHHHHhCCC---hhHH-------HHHHHHHHh-cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCc
Q 007998          276 SLVTWNTMVMAFAVHGD---GPRA-------LELFEQMGR-AGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK  344 (582)
Q Consensus       276 ~~~~~~~li~~~~~~g~---~~~A-------~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~  344 (582)
                      -.........++++...   .++|       +++.+.+.. .|..-...|.+--+.-+...|+..+|.++-.+..    -
T Consensus       637 r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----i  712 (829)
T KOG2280|consen  637 RIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----I  712 (829)
T ss_pred             cchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----C
Confidence            11122223334444332   1111       222222222 2223334455556666777888888888766655    4


Q ss_pred             cChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          345 PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       345 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ||...|-.-+.+++..+++++-+++-++..   .+.-|.-+..+|.+.|+.++|.+.+-+.-.        +.-...+|.
T Consensus       713 pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~  781 (829)
T KOG2280|consen  713 PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYL  781 (829)
T ss_pred             cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHH
Confidence            788888777888888888888888777663   245677778888888888888877765421        225677888


Q ss_pred             hcCCchHHHHHH
Q 007998          425 AYERWDDVGRVR  436 (582)
Q Consensus       425 ~~g~~~~a~~~~  436 (582)
                      +.|++.+|.++-
T Consensus       782 ~~~~~~eAad~A  793 (829)
T KOG2280|consen  782 RVGDVKEAADLA  793 (829)
T ss_pred             HhccHHHHHHHH
Confidence            888888887754

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.85  E-value=0.034  Score=45.29  Aligned_cols=104  Identities=13%  Similarity=0.033  Sum_probs=57.6

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chHHHHHHHHHHH
Q 007998           79 VLRGLAHSSKPTNAVLWYRQMLRGSHRSD--ALTCSFALKACARVLALFETLQIHSHVLRHGFLA--DALLGTTLLDVYA  154 (582)
Q Consensus        79 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~  154 (582)
                      +...+-..|+.++|+.+|++....|+...  ...+..+.+.+...|++++|..+++......+.+  +..+...+.-.+.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            34455566777777777777777665543  2345556666677777777777777766542210  1222222334555


Q ss_pred             hcCCHHHHHHHHhhcCCCChhHHHHHHH
Q 007998          155 KVGEIVSAKKVFDEMGVRDIASWNALIA  182 (582)
Q Consensus       155 ~~g~~~~A~~~f~~m~~~~~~~~~~li~  182 (582)
                      ..|+.++|.+.+-....++...|.--|.
T Consensus        87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~  114 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALAETLPRYRRAIR  114 (120)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666654433333333333333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.84  E-value=0.79  Score=47.79  Aligned_cols=131  Identities=10%  Similarity=-0.005  Sum_probs=75.4

Q ss_pred             HHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhC-CCCCChhHHHHH-------HHHHHhcCChHHHHH
Q 007998           58 LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-SHRSDALTCSFA-------LKACARVLALFETLQ  129 (582)
Q Consensus        58 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l-------l~~~~~~~~~~~a~~  129 (582)
                      +++|.+..+.-  |.+..|..|.......-.++-|...|-+.... |++.-. -...+       ....+-.|.+++|++
T Consensus       679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vk-rl~~i~s~~~q~aei~~~~g~feeaek  755 (1189)
T KOG2041|consen  679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVK-RLRTIHSKEQQRAEISAFYGEFEEAEK  755 (1189)
T ss_pred             hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHH-HhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence            45555555443  45567877777666666667777777665432 332100 00111       011223477888888


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----ChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998          130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-----DIASWNALIAGLAQGNLASEAVDLFKRM  200 (582)
Q Consensus       130 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m  200 (582)
                      ++-.+-++.         ..|.++.+.||+-...++++.-...     -..+|+.+...++....|++|.+.|..-
T Consensus       756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            876665543         2466777788887777777654321     1346777777666666676666666543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.77  E-value=0.0029  Score=41.25  Aligned_cols=42  Identities=19%  Similarity=0.315  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998          380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN  421 (582)
Q Consensus       380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  421 (582)
                      .+|..+..+|...|++++|+++++++++.+|+|+..+..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467888999999999999999999999999999988877754

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.76  E-value=0.2  Score=49.23  Aligned_cols=161  Identities=19%  Similarity=0.160  Sum_probs=90.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHhcccCCCC------HHHHHHHHHHHHh---CCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998          250 AVIDMYAKCGLLDKAFEVFDNIKCRKS------LVTWNTMVMAFAV---HGDGPRALELFEQMGRAGVKPDDVSYLAALC  320 (582)
Q Consensus       250 ~li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (582)
                      .++-.|....+++...++++.+...|+      ...--...-++.+   .|+.++|++++..+....-.++..||..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            444456677777777777776651221      1111223344455   6777777777777555555666666666665


Q ss_pred             HHHc---------CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCC-HH---HHHHHH---HhC-------CCCC
Q 007998          321 ACNH---------AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR-LQ---EACDIV---KSV-------SMGT  377 (582)
Q Consensus       321 a~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~A~~~~---~~~-------~~~p  377 (582)
                      .|-.         ....++|...|.+.-+  +.|+...--.++..+...|. .+   +..++-   ...       .-..
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~  303 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ  303 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence            5432         2235566666665544  33443322222223333332 11   222221   111       1123


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      |--.+.+++.++.-.|+.+.|.+.++++.++.|+.
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            55666789999999999999999999999998754

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.65  E-value=0.0088  Score=59.37  Aligned_cols=64  Identities=13%  Similarity=-0.100  Sum_probs=33.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch---hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG---DFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      +...|+.+..+|...|++++|+..|+++++++|++..   +|..++.+|...|+.++|...+++..+
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555442   255555555555555555555555444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.59  Score=45.73  Aligned_cols=45  Identities=16%  Similarity=-0.037  Sum_probs=21.3

Q ss_pred             HcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007998           84 AHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ  129 (582)
Q Consensus        84 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  129 (582)
                      -+..++.+|+..+....+..+. +..-|..-+..+...++++++.-
T Consensus        60 yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~  104 (486)
T KOG0550|consen   60 YKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALG  104 (486)
T ss_pred             HHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhccc
Confidence            3344555666666666554322 22233333444444555555443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.50  E-value=0.077  Score=45.33  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=72.2

Q ss_pred             HHcCCCHHHHHHHHHHHhH-c-CCc-cChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007998          322 CNHAGLVDDGVRLFNSMAN-C-GVK-PNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMA  398 (582)
Q Consensus       322 ~~~~g~~~~a~~~~~~~~~-~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a  398 (582)
                      ....++.+.+...+.++.. + |.- |+...          ..-.......+++.-    ......++..+...|+++.|
T Consensus        16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a   81 (146)
T PF03704_consen   16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA   81 (146)
T ss_dssp             HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence            3556788888888888877 3 311 11111          111222223333321    23566777888899999999


Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      ...+++++..+|-+...|..++.+|...|+..+|.++++++.
T Consensus        82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999875

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.44  E-value=0.052  Score=51.25  Aligned_cols=98  Identities=16%  Similarity=0.093  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHH
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV----SMGT-DMVLWQT  384 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~  384 (582)
                      .|...+....+.|++++|...|+.+.+.-  |+    ...+-.+...|...|++++|...|+.+    |..| ....+..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            34444444445566777777777666621  22    234445667777777777777777665    2222 2445555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998          385 LLGACQLYGDVEMAEIASRKLVEMGSNNC  413 (582)
Q Consensus       385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  413 (582)
                      +...+...|+.+.|...++++++..|++.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            66677788999999999999999988764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.44  E-value=0.28  Score=44.62  Aligned_cols=165  Identities=12%  Similarity=0.068  Sum_probs=84.9

Q ss_pred             HHHHHHhcCCHHHHHHHHhccc-CCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHH
Q 007998          251 VIDMYAKCGLLDKAFEVFDNIK-CRK----SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACN  323 (582)
Q Consensus       251 li~~y~~~g~~~~A~~~~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~  323 (582)
                      ....+...|++++|.+.|+.+. .-|    -..+.-.++.++.+.|++++|...|++..+.  -|+.  .-+...+.+.+
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~   88 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLS   88 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHH
Confidence            3344555666666666666654 011    1234445566667777777777777776653  2322  12222222211


Q ss_pred             c-------------CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007998          324 H-------------AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQ  390 (582)
Q Consensus       324 ~-------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~  390 (582)
                      .             .+...+|...|+.++               .-|=......+|...+..+...- ..---.+..-|.
T Consensus        89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~  152 (203)
T PF13525_consen   89 YYKQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYY  152 (203)
T ss_dssp             HHHHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             HHHhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            1             111223333343333               33333334444544443331000 001112456688


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHhcCCchHHH
Q 007998          391 LYGDVEMAEIASRKLVEMGSNNC---GDFVLLSNLYAAYERWDDVG  433 (582)
Q Consensus       391 ~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~  433 (582)
                      +.|.+..|..-++.+++.-|+.+   .+...++.+|.+.|..+.+.
T Consensus       153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            89999999999999999988754   35678888899999887444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.43  E-value=0.7  Score=41.98  Aligned_cols=61  Identities=16%  Similarity=-0.022  Sum_probs=33.6

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc
Q 007998          179 ALIAGLAQGNLASEAVDLFKRMKMEGVF-KPNEVTVLGALAACGHLGAWKEGDKIHEYIREE  239 (582)
Q Consensus       179 ~li~~~~~~g~~~~A~~~~~~m~~~g~~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~  239 (582)
                      .....+.+.|++.+|++.|+.+...-.. +--......++.++.+.|+++.|...++..++.
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3444556677777777777777655210 111234445556666666777776666666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.28  E-value=0.49  Score=48.81  Aligned_cols=80  Identities=10%  Similarity=0.016  Sum_probs=49.7

Q ss_pred             CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHH
Q 007998          209 NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA  288 (582)
Q Consensus       209 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~  288 (582)
                      +..+...+..-+-+...+..|.++|..|-+.         ..++++....+++.+|..+-++.+ +--...|-....-++
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP-e~~~dVy~pyaqwLA  815 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP-EFKDDVYMPYAQWLA  815 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc-cccccccchHHHHhh
Confidence            3445555555556667778888888776432         357788888899999999988887 322223333333444


Q ss_pred             hCCChhHHHH
Q 007998          289 VHGDGPRALE  298 (582)
Q Consensus       289 ~~g~~~~A~~  298 (582)
                      ...++++|.+
T Consensus       816 E~DrFeEAqk  825 (1081)
T KOG1538|consen  816 ENDRFEEAQK  825 (1081)
T ss_pred             hhhhHHHHHH
Confidence            4555555443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.25  E-value=1.3  Score=43.17  Aligned_cols=304  Identities=14%  Similarity=0.063  Sum_probs=192.0

Q ss_pred             CCHHHHHHHHhcCCCCChhHHHHHHHHHHc--CCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHH--hcCChHHHHHHH
Q 007998           56 NELAYAHALFRQINAPSTNDFNAVLRGLAH--SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA--RVLALFETLQIH  131 (582)
Q Consensus        56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~  131 (582)
                      .+...+.+.|..-..  -..|.+|-.++.-  .|+-..|.++-.+-.+. +..|...+..++.+-+  -.|+.+.|++-|
T Consensus        67 ~sP~t~~Ryfr~rKR--drgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kf  143 (531)
T COG3898          67 ESPYTARRYFRERKR--DRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKF  143 (531)
T ss_pred             hCcHHHHHHHHHHHh--hhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHH
Confidence            466667777765432  2356666666543  46666777666655432 4556666777775543  568999999999


Q ss_pred             HHHHHcCCCCchHH--HHHHHHHHHhcCCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 007998          132 SHVLRHGFLADALL--GTTLLDVYAKVGEIVSAKKVFDEMGV--R-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF  206 (582)
Q Consensus       132 ~~~~~~g~~~~~~~--~~~li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  206 (582)
                      +.|...   |....  ...|.-.--+.|+.+.|+..-+....  | -...|.+.+...+..|+|+.|+++++.-+...++
T Consensus       144 eAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi  220 (531)
T COG3898         144 EAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI  220 (531)
T ss_pred             HHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence            988643   22221  22233333467888888877766542  2 3457888888999999999999999888776655


Q ss_pred             CCCHHH--HHHHHHHHh--cc-CCcHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHHH
Q 007998          207 KPNEVT--VLGALAACG--HL-GAWKEGDKIHEYIREERLDMNVV-VCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVT  279 (582)
Q Consensus       207 ~pd~~t--~~~ll~a~~--~~-~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~  279 (582)
                      .+|..-  -..++.+-+  .. .+...|+..-.+..+.  .||.. .--.-..+|.+.|++.++-.+++.+- .+|-...
T Consensus       221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i  298 (531)
T COG3898         221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI  298 (531)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence            666542  223333222  11 2455566555555543  44432 22234567889999999999998774 3454444


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHh-cCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHH
Q 007998          280 WNTMVMAFAVHGDGPRALELFEQMGR-AGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL  357 (582)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  357 (582)
                      |.    .|....-.+.++.-+++... ..++||. .+...+..+-...|++..|..--+....  ..|....|..|.+.-
T Consensus       299 a~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIe  372 (531)
T COG3898         299 AL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIE  372 (531)
T ss_pred             HH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHH
Confidence            43    34444444556655555543 2356665 4666777788888998888776655554  568888888888775


Q ss_pred             hh-cCCHHHHHHHHHhC
Q 007998          358 GR-AGRLQEACDIVKSV  373 (582)
Q Consensus       358 ~~-~g~~~~A~~~~~~~  373 (582)
                      .. .|+-.++...+-+.
T Consensus       373 eAetGDqg~vR~wlAqa  389 (531)
T COG3898         373 EAETGDQGKVRQWLAQA  389 (531)
T ss_pred             hhccCchHHHHHHHHHH
Confidence            54 48888998888765

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.25  E-value=0.037  Score=53.54  Aligned_cols=259  Identities=13%  Similarity=0.022  Sum_probs=159.5

Q ss_pred             HHHHcCCCchHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCchHHHHHHHH
Q 007998           81 RGLAHSSKPTNAVLWYRQMLRGSHRSDA----LTCSFALKACARVLALFETLQIHSHVLR----HGF-LADALLGTTLLD  151 (582)
Q Consensus        81 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~li~  151 (582)
                      .-+++.|+++..+.+|+..++.|.. |.    ..|..|-++|.-.+++++|.+.|..=+.    .|- .-.......|.+
T Consensus        25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            3478899999999999999987754 43    3466667788888899999988754221    110 011222334455


Q ss_pred             HHHhcCCHHHHHHHHh-hc------CCC--ChhHHHHHHHHHHhCCCh--------------------hHHHHHHHHHH-
Q 007998          152 VYAKVGEIVSAKKVFD-EM------GVR--DIASWNALIAGLAQGNLA--------------------SEAVDLFKRMK-  201 (582)
Q Consensus       152 ~y~~~g~~~~A~~~f~-~m------~~~--~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~-  201 (582)
                      .+--.|.+++|.-.-. .+      ..+  ...++..+...|...|+.                    +.|.++|.+=+ 
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            5555677777654322 11      111  223455566666555431                    23444443321 


Q ss_pred             ---HcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHH----cCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccc-
Q 007998          202 ---MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE----ERLD-MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-  272 (582)
Q Consensus       202 ---~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-  272 (582)
                         ..|---.-...|..+.+.|.-+|+++.|...|+.-+.    -|-. .....+..|.++|.-.|+++.|.+.|+... 
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence               1111001113456666666677889999988876442    2211 234567778889999999999999887532 


Q ss_pred             -----CCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHh----cC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998          273 -----CRK--SLVTWNTMVMAFAVHGDGPRALELFEQMGR----AG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN  340 (582)
Q Consensus       273 -----~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  340 (582)
                           -.+  ...+..+|...|.-..++++|+.++.+-..    .+ ..-....+-+|..++...|..++|..+.+.-.+
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                 122  234566788888888899999988876432    11 122345777888999999999998887766655

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.14  E-value=2.6  Score=45.61  Aligned_cols=157  Identities=13%  Similarity=0.037  Sum_probs=100.6

Q ss_pred             HHHHhcCCC-CCHHHHHHHHhcCCC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC-
Q 007998           47 IEFYALSPL-NELAYAHALFRQINA--PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL-  122 (582)
Q Consensus        47 ~~li~~y~~-g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-  122 (582)
                      ..|...|.. |..++|..++++...  |+..-...+.-+|+|.+++.+-.+.--+|.+. .+-+.+.|-++++...+.- 
T Consensus        81 q~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~  159 (932)
T KOG2053|consen   81 QFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIF  159 (932)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhcc
Confidence            477777877 999999999999864  55555556666788877776533333333332 3446677778877765431 


Q ss_pred             C---------hHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHhcCCHHHHHHHHhh-----cCCCChhHHHHHHHHHHhC
Q 007998          123 A---------LFETLQIHSHVLRHG-FLADALLGTTLLDVYAKVGEIVSAKKVFDE-----MGVRDIASWNALIAGLAQG  187 (582)
Q Consensus       123 ~---------~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~-----m~~~~~~~~~~li~~~~~~  187 (582)
                      .         +..|....+.+++.+ ..-+..-.-.-.......|..++|.+++..     ...-+...-|--+..+...
T Consensus       160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l  239 (932)
T KOG2053|consen  160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL  239 (932)
T ss_pred             CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence            1         233555666666544 111111111222345578889999998832     2233555556677888889


Q ss_pred             CChhHHHHHHHHHHHcC
Q 007998          188 NLASEAVDLFKRMKMEG  204 (582)
Q Consensus       188 g~~~~A~~~~~~m~~~g  204 (582)
                      ++|.+..++-.++...|
T Consensus       240 ~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  240 NRWQELFELSSRLLEKG  256 (932)
T ss_pred             cChHHHHHHHHHHHHhC
Confidence            99999999999998886

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=2.4  Score=44.90  Aligned_cols=307  Identities=11%  Similarity=0.012  Sum_probs=165.7

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC-CCchHHHHHHHHHHH
Q 007998           77 NAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRH-GF-LADALLGTTLLDVYA  154 (582)
Q Consensus        77 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~y~  154 (582)
                      ..+|.-++..+.+..|+++-..+...-..- ...|.....-+.+..+.. -..+++.+.+. +. -.+...|..+..--.
T Consensus       441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~Ay  518 (829)
T KOG2280|consen  441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRAY  518 (829)
T ss_pred             hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHHH
Confidence            356677777788888888887774321121 345555555554442221 12222222221 11 133456777777777


Q ss_pred             hcCCHHHHHHHHhhcCCC--------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC----------CCCCHHHHHHH
Q 007998          155 KVGEIVSAKKVFDEMGVR--------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGV----------FKPNEVTVLGA  216 (582)
Q Consensus       155 ~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~~pd~~t~~~l  216 (582)
                      .+|+.+-|.++++.=+..        +..-+..-+.-..+.|+.+-...++..|.+.-.          .+.....|.-+
T Consensus       519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~  598 (829)
T KOG2280|consen  519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQF  598 (829)
T ss_pred             hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHH
Confidence            889999999888653321        222344455556677777766666655543210          01111222222


Q ss_pred             HH---------HHhccCCcHHHHHHHHHH---HH--cCCCCchhHHHHHHHHHHhcCCHHHH----------HHHHhccc
Q 007998          217 LA---------ACGHLGAWKEGDKIHEYI---RE--ERLDMNVVVCNAVIDMYAKCGLLDKA----------FEVFDNIK  272 (582)
Q Consensus       217 l~---------a~~~~~~~~~a~~~~~~~---~~--~~~~~~~~~~~~li~~y~~~g~~~~A----------~~~~~~~~  272 (582)
                      +.         .|....+......++-+-   .+  .+..|+   .....+.+.+.....-.          +++++.+.
T Consensus       599 ~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le  675 (829)
T KOG2280|consen  599 MRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE  675 (829)
T ss_pred             HHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            22         122222222222222211   11  133333   33344455544431111          11222222


Q ss_pred             C----CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChh
Q 007998          273 C----RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMK  348 (582)
Q Consensus       273 ~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~  348 (582)
                      .    .-.-.+.+--+.-+...|+-.+|.++-.+.+    -||...|-.=+.+++..+++++-+++-+....      +.
T Consensus       676 ~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PI  745 (829)
T KOG2280|consen  676 DQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PI  745 (829)
T ss_pred             HHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CC
Confidence            0    1112234445566677888888888877654    67888888888888888988887776655543      23


Q ss_pred             hHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007998          349 HYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRK  404 (582)
Q Consensus       349 ~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~  404 (582)
                      -|.-.+..+.+.|+.+||.+++.+.+-.+      -...+|.+.|++.+|.+..-+
T Consensus       746 Gy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~  795 (829)
T KOG2280|consen  746 GYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE  795 (829)
T ss_pred             CchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence            34457788889999999999988875333      345566777777777665443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.08  E-value=0.012  Score=44.03  Aligned_cols=61  Identities=11%  Similarity=0.140  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC---CchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          380 VLWQTLLGACQLYGDVEMAEIASRKLVEM----GSN---NCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      .+++.+...|...|++++|+..++++++.    +++   ...++..++.+|...|++++|.+.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45667777778888888888888877753    222   24466778888888888888888877654

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.01  E-value=1.9  Score=42.95  Aligned_cols=409  Identities=9%  Similarity=0.023  Sum_probs=220.7

Q ss_pred             ChhHHHHHHHHHHHhCCCCCCCcchhc---hHHHHHhcCCCCCHHHHHHHHhcCCCCC-hhHHHHHHHHH--HcCCCchH
Q 007998           18 SHIHIKQLQAHLTTTGQFQSKLFPVRS---KIIEFYALSPLNELAYAHALFRQINAPS-TNDFNAVLRGL--AHSSKPTN   91 (582)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~y~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~--~~~g~~~~   91 (582)
                      +...+..++..+.+.--..   +++..   -.+.++++|-..+++..........+.. ...|-.|..++  -+.+.+..
T Consensus        21 ~~~esEkifskI~~e~~~~---~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~k   97 (549)
T PF07079_consen   21 KFQESEKIFSKIYDEKESS---PFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRK   97 (549)
T ss_pred             hhhHHHHHHHHHHHHhhcc---hHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHH
Confidence            4677888888888754332   33210   0157888887655555554444332111 22344444433  36678888


Q ss_pred             HHHHHHHHHhC--CCCC-----------ChhHH-HHHHHHHHhcCChHHHHHHHHHHHHcCC----CCchHHHHHHHHHH
Q 007998           92 AVLWYRQMLRG--SHRS-----------DALTC-SFALKACARVLALFETLQIHSHVLRHGF----LADALLGTTLLDVY  153 (582)
Q Consensus        92 A~~~~~~m~~~--g~~p-----------~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~y  153 (582)
                      |++.|..-...  +-+|           +.+.+ +..+..+...|.+.+|+.+++++...=+    .-+..+|+.++-++
T Consensus        98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml  177 (549)
T PF07079_consen   98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML  177 (549)
T ss_pred             HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence            88888765543  2222           12222 3345667788999999999888876433    35778888887777


Q ss_pred             HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC-------------------------------ChhHHHHHHHHHHH
Q 007998          154 AKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGN-------------------------------LASEAVDLFKRMKM  202 (582)
Q Consensus       154 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-------------------------------~~~~A~~~~~~m~~  202 (582)
                      ++.=-++.-......+    ..-|.-||..|.+.=                               +..--++++..-..
T Consensus       178 srSYfLEl~e~~s~dl----~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~  253 (549)
T PF07079_consen  178 SRSYFLELKESMSSDL----YPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN  253 (549)
T ss_pred             hHHHHHHHHHhccccc----ChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence            7643222211111110    112233333332211                               11111222222222


Q ss_pred             cCCCCCCHHH-HHHHHHHHhccCCcHHHHHHHHHHHHcCCCC----chhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC
Q 007998          203 EGVFKPNEVT-VLGALAACGHLGAWKEGDKIHEYIREERLDM----NVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS  276 (582)
Q Consensus       203 ~g~~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~  276 (582)
                      .-+ .|+... ...+.....+  +.+++..+-+.+....+.+    =...+..++....+.++...|.+.+.-+. ..|+
T Consensus       254 ~yv-~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~  330 (549)
T PF07079_consen  254 FYV-HPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR  330 (549)
T ss_pred             hcc-CCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence            333 555332 2333333333  6666666666555442211    13456667777778888888877776554 2344


Q ss_pred             HHHHH-------HHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHH-HHHHHHH---HHHcCCC-HHHHHHHHHHHhH
Q 007998          277 LVTWN-------TMVMAFAV----HGDGPRALELFEQMGRAGVKPDDV-SYLAALC---ACNHAGL-VDDGVRLFNSMAN  340 (582)
Q Consensus       277 ~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~---a~~~~g~-~~~a~~~~~~~~~  340 (582)
                      ...-.       .+-+..+.    .-+..+-+.+|.......+  |.. ....++.   -+-+.|. -+.|..+++.+.+
T Consensus       331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~  408 (549)
T PF07079_consen  331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ  408 (549)
T ss_pred             chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            33111       12222221    1123344555555554432  332 1112222   2223444 7888888888887


Q ss_pred             cCCccChhhHHhhh----hHHhhc---CC---HHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCChHHHHHHHHH
Q 007998          341 CGVKPNMKHYGSVV----DLLGRA---GR---LQEACDIVKSVSMGT----DMVLWQTLLGA--CQLYGDVEMAEIASRK  404 (582)
Q Consensus       341 ~~~~~~~~~~~~li----~~~~~~---g~---~~~A~~~~~~~~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~  404 (582)
                      .. +-|...-|.+.    ..|..+   ..   +-+-+.++++.++.|    +...-|.|..|  +..+|++.++.-.-.-
T Consensus       409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W  487 (549)
T PF07079_consen  409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW  487 (549)
T ss_pred             hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            21 22333333222    122211   11   222334455666655    44555666654  4789999999988888


Q ss_pred             HHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          405 LVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       405 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      +.+..| ++.+|..++-+.....++++|..++..+.
T Consensus       488 L~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  488 LTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            999999 88999999999999999999999998654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.12  Score=50.46  Aligned_cols=64  Identities=13%  Similarity=0.048  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      .++..|...|.+.+++..|++...+.++++|+|.-+...-+.+|...|.++.|+..|+++.+..
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~  321 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE  321 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            3667778888999999999999999999999999999999999999999999999999988754

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.88  E-value=0.77  Score=37.41  Aligned_cols=139  Identities=15%  Similarity=0.161  Sum_probs=83.4

Q ss_pred             HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHH
Q 007998          288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEA  366 (582)
Q Consensus       288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A  366 (582)
                      .-.|..++..++..+....   .+..-++.++.-....-+-+-..+.++..-+ +++.              .+|++...
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV   75 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV   75 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence            3467777788888777653   2444555555444444444444555555444 3222              34444444


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          367 CDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       367 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      ..-+-.++  .+.......+.+...+|+-+.-.++++.+.+.+..+|....-++++|.+.|+..++..++++.=++|++
T Consensus        76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            44444443  244455667788889999999999999998766668889999999999999999999999999888874

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.80  E-value=1.4  Score=40.00  Aligned_cols=197  Identities=17%  Similarity=0.141  Sum_probs=105.7

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998          245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC  320 (582)
Q Consensus       245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (582)
                      ..........+...+.+..+...+....    .......+..+...+...+++..+...+.........+. ........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence            3444455555555555555555554432    123334455555555555666666666666554322221 11111112


Q ss_pred             -HHHcCCCHHHHHHHHHHHhHcCC--ccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 007998          321 -ACNHAGLVDDGVRLFNSMANCGV--KPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD--MVLWQTLLGACQLYGD  394 (582)
Q Consensus       321 -a~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~  394 (582)
                       .+...|+++.+...+.+......  ......+......+...++.++|...+.+. ...++  ...+..+...+...++
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence             45566666666666666644110  012222333333355566677777666655 22222  4566666666677777


Q ss_pred             hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       395 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      ++.+...+.......|.....+..+...+...|.++++...+......
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            777777777777777654455556666666556677777666655543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.79  E-value=0.014  Score=43.65  Aligned_cols=29  Identities=21%  Similarity=0.046  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998          379 MVLWQTLLGACQLYGDVEMAEIASRKLVE  407 (582)
Q Consensus       379 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  407 (582)
                      ..++..+...+...|++++|++.+++.++
T Consensus        46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen   46 ANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44566666777777777777777777655

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.76  E-value=0.19  Score=47.15  Aligned_cols=96  Identities=14%  Similarity=0.035  Sum_probs=42.9

Q ss_pred             ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---cCCcHHHHHHHHHHHHcCCCCchhHHH
Q 007998          173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH---LGAWKEGDKIHEYIREERLDMNVVVCN  249 (582)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~  249 (582)
                      |...|-.|...|...|++..|..-|.+..+.-  ++|+..+..+..++..   .....++..+++++++... .|+....
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~  231 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALS  231 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHH
Confidence            45555555555555555555555555554443  3333333333333221   1233444445554444431 1333333


Q ss_pred             HHHHHHHhcCCHHHHHHHHhcc
Q 007998          250 AVIDMYAKCGLLDKAFEVFDNI  271 (582)
Q Consensus       250 ~li~~y~~~g~~~~A~~~~~~~  271 (582)
                      -|...+...|++.+|...++.|
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~l  253 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQML  253 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHH
Confidence            3444444444444444444443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.62  E-value=1.4  Score=40.02  Aligned_cols=53  Identities=15%  Similarity=0.103  Sum_probs=27.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHc----CCCCchhHHHHHHHHHhcCCchHHHHHH
Q 007998          383 QTLLGACQLYGDVEMAEIASRKLVEM----GSNNCGDFVLLSNLYAAYERWDDVGRVR  436 (582)
Q Consensus       383 ~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~a~~~~  436 (582)
                      .+.+-.+....++..|++.++.--+.    +|++..+...|+.+| ..|+.+++.++.
T Consensus       194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            33334444445666666666664432    244445555555554 345555555443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.59  E-value=0.11  Score=42.77  Aligned_cols=23  Identities=13%  Similarity=0.079  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHH
Q 007998          313 VSYLAALCACNHAGLVDDGVRLF  335 (582)
Q Consensus       313 ~t~~~ll~a~~~~g~~~~a~~~~  335 (582)
                      .++..++.++++.|+++....+.
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i   25 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYI   25 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHH
Confidence            34445555555555555444444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.57  E-value=0.079  Score=48.80  Aligned_cols=103  Identities=11%  Similarity=0.093  Sum_probs=78.9

Q ss_pred             CCHHHHHHHHhcCC--CCChhHHHHHHHHHHcC-----CCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC------
Q 007998           56 NELAYAHALFRQIN--APSTNDFNAVLRGLAHS-----SKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL------  122 (582)
Q Consensus        56 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------  122 (582)
                      ..+-..+..|...+  ++|-.+|-+.+..+...     +..+-.-..++.|.+.|+.-|..+|..||+.+-+-.      
T Consensus        48 K~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv  127 (406)
T KOG3941|consen   48 KSLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV  127 (406)
T ss_pred             ccccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH
Confidence            35556677888887  78999999999888754     455666677889999999999999999998875432      


Q ss_pred             ----------ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 007998          123 ----------ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE  158 (582)
Q Consensus       123 ----------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  158 (582)
                                +-+-+..++++|...|+.||..+-..|++++++.+-
T Consensus       128 fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  128 FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence                      224467778888888888888887778887777664

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.54  E-value=0.17  Score=41.67  Aligned_cols=48  Identities=8%  Similarity=0.181  Sum_probs=29.7

Q ss_pred             CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhh
Q 007998          308 VKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVD  355 (582)
Q Consensus       308 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~  355 (582)
                      ..|+..+..+++.+|+..+++..|.++.+...+ ++++.+...|..|+.
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            456666666666666666666666666666666 555555555555544

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.54  E-value=0.13  Score=41.51  Aligned_cols=89  Identities=22%  Similarity=0.225  Sum_probs=70.1

Q ss_pred             HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC---chhHHHHHHHHHhcCCc
Q 007998          356 LLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG-SNN---CGDFVLLSNLYAAYERW  429 (582)
Q Consensus       356 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~---~~~~~~l~~~~~~~g~~  429 (582)
                      +++..|+++.|++.|.+. .+-| ....||.-..+++-+|+.++|+.-+++++++. |..   -.+|+.-+..|...|+-
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            466788888888888765 3333 67788888999999999999999999998875 332   24677788888999999


Q ss_pred             hHHHHHHHHHHhCCC
Q 007998          430 DDVGRVRKAMKNRDV  444 (582)
Q Consensus       430 ~~a~~~~~~m~~~~~  444 (582)
                      +.|+.-|+...+.|-
T Consensus       132 d~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  132 DAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHhHHHHHHhCC
Confidence            999999988877664

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.44  E-value=0.12  Score=47.91  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=49.1

Q ss_pred             hcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CchhHHHHHHHHHhcCC
Q 007998          359 RAGRLQEACDIVKSV-------SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN---NCGDFVLLSNLYAAYER  428 (582)
Q Consensus       359 ~~g~~~~A~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~  428 (582)
                      +.|++.+|...|...       ...||...|  |..++...|+++.|..+|..+.+..|+   -|..+.-|+.+..+.|+
T Consensus       153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~  230 (262)
T COG1729         153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN  230 (262)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence            344455555555443       122344444  556666667777777777766665543   34566666666777777


Q ss_pred             chHHHHHHHHHHhCC
Q 007998          429 WDDVGRVRKAMKNRD  443 (582)
Q Consensus       429 ~~~a~~~~~~m~~~~  443 (582)
                      .++|..+++...++-
T Consensus       231 ~d~A~atl~qv~k~Y  245 (262)
T COG1729         231 TDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHHHHHHHHHHC
Confidence            777777776666543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.44  E-value=0.17  Score=42.15  Aligned_cols=57  Identities=19%  Similarity=0.162  Sum_probs=39.9

Q ss_pred             HhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998          357 LGRAGRLQEACDIVKSV----SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC  413 (582)
Q Consensus       357 ~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  413 (582)
                      ..+.|++++|.+.|+.+    |..| ....--.|+.++.+.+++++|...+++.++++|.++
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp   81 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP   81 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence            44667777777777766    3333 344555677788888888888888888888887654

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.22  E-value=0.14  Score=47.18  Aligned_cols=102  Identities=16%  Similarity=0.164  Sum_probs=78.6

Q ss_pred             HHHHHHhccc-CCCCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC----------
Q 007998          263 KAFEVFDNIK-CRKSLVTWNTMVMAFAVH-----GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG----------  326 (582)
Q Consensus       263 ~A~~~~~~~~-~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----------  326 (582)
                      ..++.|.... .++|-.+|-+++..+..+     +..+=....++.|.+.|+.-|..+|..||+.+-+..          
T Consensus        52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~  131 (406)
T KOG3941|consen   52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV  131 (406)
T ss_pred             chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence            3455566554 456778888888877654     455666667788899999999999999998875532          


Q ss_pred             ------CHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHH
Q 007998          327 ------LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQ  364 (582)
Q Consensus       327 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  364 (582)
                            +-+-+.+++++|..+|+.||.++-..|+.++++.+..-
T Consensus       132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~  175 (406)
T KOG3941|consen  132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT  175 (406)
T ss_pred             HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence                  23457899999999999999999999999999988643

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.13  E-value=0.13  Score=43.85  Aligned_cols=70  Identities=19%  Similarity=0.116  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHH-----HcCCCCchhH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR-----EERLDMNVVV  247 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~  247 (582)
                      +...++..+...|++++|+.+...+....  |.|...|..+|.++...|+...|.++|+.+.     +.|+.|+..+
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            34445555666777777777777766665  5566667777777777777777776666553     2466665444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.09  E-value=5.3  Score=42.02  Aligned_cols=151  Identities=12%  Similarity=0.112  Sum_probs=93.3

Q ss_pred             CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 007998           56 NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSD----ALTCSFALKACARVLALFETLQIH  131 (582)
Q Consensus        56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~  131 (582)
                      |.+++|.+++-.+..+|.     .|..+.+.|+|-...++++.=   |-..|    ...|+.+...++....+++|.+.+
T Consensus       748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY  819 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY  819 (1189)
T ss_pred             cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999988887775     355666677776666665431   11111    245677777777777777777776


Q ss_pred             HHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH
Q 007998          132 SHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV  211 (582)
Q Consensus       132 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~  211 (582)
                      ..--      +.   ...+.+|.+..++++-+.+-..+++. ....-.|...+.+.|.-++|.+.|-+-   +  .|-  
T Consensus       820 ~~~~------~~---e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s--~pk--  882 (1189)
T KOG2041|consen  820 SYCG------DT---ENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S--LPK--  882 (1189)
T ss_pred             Hhcc------ch---HhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c--CcH--
Confidence            5431      11   13566666667777766666666543 334556677777777777777766433   2  222  


Q ss_pred             HHHHHHHHHhccCCcHHHHHHHH
Q 007998          212 TVLGALAACGHLGAWKEGDKIHE  234 (582)
Q Consensus       212 t~~~ll~a~~~~~~~~~a~~~~~  234 (582)
                         ..+..|..++++.+|.++-+
T Consensus       883 ---aAv~tCv~LnQW~~avelaq  902 (1189)
T KOG2041|consen  883 ---AAVHTCVELNQWGEAVELAQ  902 (1189)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHH
Confidence               23455666666666655543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.09  E-value=2.2  Score=42.23  Aligned_cols=72  Identities=13%  Similarity=0.064  Sum_probs=48.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhcCCC---Ch----hHHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 007998          148 TLLDVYAKVGEIVSAKKVFDEMGVR---DI----ASWNALIAGLAQ---GNLASEAVDLFKRMKMEGVFKPNEVTVLGAL  217 (582)
Q Consensus       148 ~li~~y~~~g~~~~A~~~f~~m~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll  217 (582)
                      .|+-.|....+++...++++.++..   ++    ..-.-..-++.+   .|+.++|++++..+..... .+++.||..+.
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~-~~~~d~~gL~G  224 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDE-NPDPDTLGLLG  224 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccC-CCChHHHHHHH
Confidence            3444588888889999988888654   11    111123334455   7888999999888655555 78888888777


Q ss_pred             HHH
Q 007998          218 AAC  220 (582)
Q Consensus       218 ~a~  220 (582)
                      ..|
T Consensus       225 RIy  227 (374)
T PF13281_consen  225 RIY  227 (374)
T ss_pred             HHH
Confidence            665

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.95  E-value=4.4  Score=40.37  Aligned_cols=129  Identities=14%  Similarity=0.092  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhHcC-CccChhhHHhhhhHHhhcCCHHHHHHHHHh-CCCCCCHHHH-HHHHHHH
Q 007998          313 VSYLAALCACNHAGLVDDGVRLFNSMANCG-VKPNMKHYGSVVDLLGRAGRLQEACDIVKS-VSMGTDMVLW-QTLLGAC  389 (582)
Q Consensus       313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~-~~ll~~~  389 (582)
                      ..|...+++-.+..-++.|+.+|-++.+.+ +.+++..+++++.-++ .|+..-|.++|+- |..-||...| +-.+.-+
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL  476 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL  476 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            345666777777888999999999999977 6688899999988765 5677889999874 3334554444 4566667


Q ss_pred             HhcCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          390 QLYGDVEMAEIASRKLVEMGS--NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       390 ~~~g~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      ...++-+.|..+|+...+.-.  .-...|..++.--..-|+...+..+-++|.+.
T Consensus       477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            778888999999996554322  22457888888778888888888877777654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.91  E-value=0.46  Score=46.50  Aligned_cols=94  Identities=12%  Similarity=0.089  Sum_probs=74.3

Q ss_pred             hHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 007998          349 HYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY  426 (582)
Q Consensus       349 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  426 (582)
                      .+..|.-.|.+.+++.+|++.-... ... +|+...--=..+|...|+++.|+..|+++++++|.|-.+-..|+.+-.+.
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            4556777888999999998887765 333 46766666778899999999999999999999999988888888777776


Q ss_pred             CCchHH-HHHHHHHHhC
Q 007998          427 ERWDDV-GRVRKAMKNR  442 (582)
Q Consensus       427 g~~~~a-~~~~~~m~~~  442 (582)
                      .+..+. .++|..|-.+
T Consensus       339 ~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  339 REYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            665554 7788888643

>PRK15331 chaperone protein SicA; Provisional

Probab=94.83  E-value=0.66  Score=39.73  Aligned_cols=86  Identities=12%  Similarity=-0.005  Sum_probs=39.3

Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007998          184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK  263 (582)
Q Consensus       184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~  263 (582)
                      +-+.|++++|..+|+-+...+  +-|..-+..+..+|...+++++|...|......+. -|+...-.....|...|+.+.
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence            334555555555555544433  23333334444444444555555555554443322 122223334455555555555


Q ss_pred             HHHHHhccc
Q 007998          264 AFEVFDNIK  272 (582)
Q Consensus       264 A~~~~~~~~  272 (582)
                      |+..|+...
T Consensus       124 A~~~f~~a~  132 (165)
T PRK15331        124 ARQCFELVN  132 (165)
T ss_pred             HHHHHHHHH
Confidence            555555443

>PRK11906 transcriptional regulator; Provisional

Probab=94.73  E-value=0.58  Score=47.00  Aligned_cols=79  Identities=11%  Similarity=0.055  Sum_probs=52.6

Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          364 QEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       364 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      .+|.++-++. ...| |+.....+..+....++++.|...|+++..++|+.+.++...+....-.|+.++|.+.+++..+
T Consensus       321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            3444444433 3333 5566555656566666677788888888888887777777777777777888777777776544


Q ss_pred             C
Q 007998          442 R  442 (582)
Q Consensus       442 ~  442 (582)
                      .
T Consensus       401 L  401 (458)
T PRK11906        401 L  401 (458)
T ss_pred             c
Confidence            3

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.63  E-value=1.7  Score=35.45  Aligned_cols=65  Identities=14%  Similarity=0.152  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD  242 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~  242 (582)
                      .....+......|+-+.-.+++..+.+.+  .+++.....+.+||.+.|+..++.+++.++-+.|++
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            44556777888888888888888887654  788888889999999999999999998888888754

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PRK11906 transcriptional regulator; Provisional

Probab=94.59  E-value=2.4  Score=42.70  Aligned_cols=157  Identities=11%  Similarity=0.098  Sum_probs=103.7

Q ss_pred             HHH--HHHHHHHHhC-----CChhHHHHHHHHHHh-cCCCCCHH-HHHHHHHHHHc---------CCCHHHHHHHHHHHh
Q 007998          278 VTW--NTMVMAFAVH-----GDGPRALELFEQMGR-AGVKPDDV-SYLAALCACNH---------AGLVDDGVRLFNSMA  339 (582)
Q Consensus       278 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~~~  339 (582)
                      ..|  ..++.+....     ...+.|+.+|.+... +...|+.. .|..+..++..         .....+|.+.-++..
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            566  6666665542     234678889999883 33567653 44333322221         234556777777777


Q ss_pred             HcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998          340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV  417 (582)
Q Consensus       340 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  417 (582)
                      +.+ +-|......+..++.-.++++.|...|++. ...|| ..+|......+.-.|+.++|.+.+++.++++|.....-+
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~  410 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV  410 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence            743 345666666777778888899999999987 55674 556666666777889999999999999999997544333


Q ss_pred             --HHHHHHHhcCCchHHHHHH
Q 007998          418 --LLSNLYAAYERWDDVGRVR  436 (582)
Q Consensus       418 --~l~~~~~~~g~~~~a~~~~  436 (582)
                        ..+++|...+ .++|.+++
T Consensus       411 ~~~~~~~~~~~~-~~~~~~~~  430 (458)
T PRK11906        411 IKECVDMYVPNP-LKNNIKLY  430 (458)
T ss_pred             HHHHHHHHcCCc-hhhhHHHH
Confidence              3344565554 55666655

>PRK09687 putative lyase; Provisional

Probab=94.55  E-value=4.6  Score=38.71  Aligned_cols=179  Identities=15%  Similarity=0.075  Sum_probs=77.8

Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCh----hHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 007998          142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLA----SEAVDLFKRMKMEGVFKPNEVTVLGAL  217 (582)
Q Consensus       142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~~pd~~t~~~ll  217 (582)
                      |..+.-..+..+...|..+....+..-+..+|...-...+.++.+.|+.    .++...+..+...   .||...-...+
T Consensus        36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~A~  112 (280)
T PRK09687         36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRASAI  112 (280)
T ss_pred             CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHHHH
Confidence            4444444444454444433222222222334444444445555555542    3455555555333   45555555555


Q ss_pred             HHHhccCCcHH--HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCC-Chh
Q 007998          218 AACGHLGAWKE--GDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG-DGP  294 (582)
Q Consensus       218 ~a~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~  294 (582)
                      .++...+....  .......+...-..++..+-...+.++++.|+.+....+...+. .+|...-..-+.++.+.+ +..
T Consensus       113 ~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~-d~~~~VR~~A~~aLg~~~~~~~  191 (280)
T PRK09687        113 NATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLK-DPNGDVRNWAAFALNSNKYDNP  191 (280)
T ss_pred             HHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc-CCCHHHHHHHHHHHhcCCCCCH
Confidence            55544432110  11122222222223355555556666666665433333333333 444444444444444432 133


Q ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC
Q 007998          295 RALELFEQMGRAGVKPDDVSYLAALCACNHAGL  327 (582)
Q Consensus       295 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~  327 (582)
                      ++...+..+..   .+|...-...+.++.+.++
T Consensus       192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~  221 (280)
T PRK09687        192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD  221 (280)
T ss_pred             HHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence            44444444442   3344444445555555555

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.49  E-value=0.47  Score=47.53  Aligned_cols=63  Identities=11%  Similarity=0.074  Sum_probs=39.2

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 007998          244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSL----VTWNTMVMAFAVHGDGPRALELFEQMGRA  306 (582)
Q Consensus       244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~  306 (582)
                      +...++.+..+|.+.|++++|...|++.. ..|+.    .+|..+..+|...|+.++|++.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35566666666667777777777766532 33442    24666666677777777777766666653

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.46  E-value=3.7  Score=37.21  Aligned_cols=199  Identities=18%  Similarity=0.115  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHhccCCcHHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC-HHHHHHHHH-H
Q 007998          211 VTVLGALAACGHLGAWKEGDKIHEYIREE-RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS-LVTWNTMVM-A  286 (582)
Q Consensus       211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~-~~~~~~li~-~  286 (582)
                      ..+......+...+.+..+...+...... ........+..+...+...+++..+.+.+.... ..++ ......... .
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            44444444455555555555555444431 122334444455555555555666666665544 0111 122222222 5


Q ss_pred             HHhCCChhHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCC
Q 007998          287 FAVHGDGPRALELFEQMGRAGVKP----DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR  362 (582)
Q Consensus       287 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  362 (582)
                      +...|+++.|...|.+...  ..|    ....+......+...++.+.+...+..............+..+...+...+.
T Consensus       140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence            6677777777777777644  233    2233333444456677888888888777763211135566667777777778


Q ss_pred             HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998          363 LQEACDIVKSV-SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN  411 (582)
Q Consensus       363 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  411 (582)
                      +++|...+... ...|+ ...+..+...+...++.+.+...+.+..+..|.
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            88888887765 33443 445555555555667789999999998888875

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.44  E-value=7.2  Score=40.53  Aligned_cols=156  Identities=16%  Similarity=0.083  Sum_probs=91.0

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHhCC-CCCCh------hHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchHH
Q 007998           77 NAVLRGLAHSSKPTNAVLWYRQMLRGS-HRSDA------LTCSFALKACAR----VLALFETLQIHSHVLRHGFLADALL  145 (582)
Q Consensus        77 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~  145 (582)
                      ..++....-.|+-+.+++++.+..+.+ +. .+      -+|..++..+..    ..+.+.+.++++.+.+.  -|+...
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            345555556677777777777765532 22 11      123333333322    34566777777777766  344444


Q ss_pred             HH-HHHHHHHhcCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 007998          146 GT-TLLDVYAKVGEIVSAKKVFDEMGVR-------DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGAL  217 (582)
Q Consensus       146 ~~-~li~~y~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll  217 (582)
                      |. .-...+...|++++|.+.|++....       ....+--+.-.+.-.++|++|.+.|..+.+..  ..+..+|.-+.
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~  346 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLA  346 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHH
Confidence            33 2345666778888888888764321       22334445555677778888888888887765  45555665555


Q ss_pred             HHH-hccCCc-------HHHHHHHHHHH
Q 007998          218 AAC-GHLGAW-------KEGDKIHEYIR  237 (582)
Q Consensus       218 ~a~-~~~~~~-------~~a~~~~~~~~  237 (582)
                      .+| ...++.       ++|.+++.++.
T Consensus       347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  347 AACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            544 345555       66666666654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=94.37  E-value=9.2  Score=41.44  Aligned_cols=114  Identities=13%  Similarity=0.061  Sum_probs=51.6

Q ss_pred             CCChhHHHHHHHHHHhc-CCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHH
Q 007998          290 HGDGPRALELFEQMGRA-GVKPDDV--SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEA  366 (582)
Q Consensus       290 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  366 (582)
                      ..+.+.|..++.+.... ++.+...  ....+.......+...++...+.......  .+......-+..-.+.++++.+
T Consensus       254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~  331 (644)
T PRK11619        254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL  331 (644)
T ss_pred             HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence            34456677777665432 2322222  22222222222221344444444433211  1223333334444466677777


Q ss_pred             HHHHHhCCCC-CCHHHHHH-HHHHHHhcCChHHHHHHHHHH
Q 007998          367 CDIVKSVSMG-TDMVLWQT-LLGACQLYGDVEMAEIASRKL  405 (582)
Q Consensus       367 ~~~~~~~~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~  405 (582)
                      ...+..|+.. .+..-|.- +..+....|+.++|...|+++
T Consensus       332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~  372 (644)
T PRK11619        332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL  372 (644)
T ss_pred             HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6777666321 11112222 334445567777777777766

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.37  E-value=1.3  Score=45.32  Aligned_cols=158  Identities=11%  Similarity=0.088  Sum_probs=90.5

Q ss_pred             HHhCCChhHHHHHHH-HHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007998          184 LAQGNLASEAVDLFK-RMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLD  262 (582)
Q Consensus       184 ~~~~g~~~~A~~~~~-~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~  262 (582)
                      ..-.++++++.++.. .-.-..+   +..-...++.-+.+.|-.+.|.++-.         |.   ..-.+...++|+++
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i---~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~  335 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNI---PKDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLD  335 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HH
T ss_pred             HHHcCChhhhhhhhhhhhhcccC---ChhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHH
Confidence            445667777666554 1111111   24446666666677777777766542         22   12345566788888


Q ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcC
Q 007998          263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG  342 (582)
Q Consensus       263 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  342 (582)
                      .|.++-++..   +...|..|.......|+++-|.+.|.+...         |..|+-.|.-.|+.+.-.++-+.....|
T Consensus       336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            8888776665   666888888888888888888888877532         3445555666777777666666665544


Q ss_pred             CccChhhHHhhhhHHhhcCCHHHHHHHHHhCC
Q 007998          343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS  374 (582)
Q Consensus       343 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  374 (582)
                            -++....++.-.|+.++..+++.+.+
T Consensus       404 ------~~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  404 ------DINIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence                  13333444555677777777777664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.31  E-value=0.096  Score=31.58  Aligned_cols=32  Identities=22%  Similarity=0.169  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998          380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSN  411 (582)
Q Consensus       380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  411 (582)
                      .+|..+...+...|++++|+..++++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            46778888888889999999999999888885

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.30  E-value=0.13  Score=30.82  Aligned_cols=33  Identities=30%  Similarity=0.251  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          380 VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      ..|..+...+...|++++|++.++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456777788888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.29  E-value=6.4  Score=39.30  Aligned_cols=133  Identities=12%  Similarity=0.110  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhH-Hhhh
Q 007998          277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY-GSVV  354 (582)
Q Consensus       277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~li  354 (582)
                      ...|...+..-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|.++|+.=..+  -||...| ...+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3467778888888888999999999999988 6788888888887665 68888999999876652  2443333 3456


Q ss_pred             hHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          355 DLLGRAGRLQEACDIVKSV--SMGTD--MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       355 ~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      ..+.+.++-+.|..+|+..  .+..+  ...|..++.--...|+...+..+-+++.++-|..
T Consensus       474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            6778899999999999854  22223  5689999999999999999999999999988864

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.29  E-value=1.9  Score=43.65  Aligned_cols=153  Identities=14%  Similarity=0.119  Sum_probs=89.4

Q ss_pred             hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHH
Q 007998          289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD  368 (582)
Q Consensus       289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  368 (582)
                      +..+...-++.-++..+  +.||-.+.-.++ +-.....+.+++++|++..+.|-    ..+..- ......|.   ..+
T Consensus       180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~---~~e  248 (539)
T PF04184_consen  180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGH---FWE  248 (539)
T ss_pred             hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccc---hhh
Confidence            34445555555555554  456654332222 33345668888888888877320    000000 00001111   111


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007998          369 IVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN--NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK  446 (582)
Q Consensus       369 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  446 (582)
                      .+..-..+|-..+-..|...+.+.|+.++|.+.++++++..|.  +......|++++...+.+.++..++.+-.+..+.+
T Consensus       249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk  328 (539)
T PF04184_consen  249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK  328 (539)
T ss_pred             hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence            1111112223344456777888999999999999999887764  45577889999999999999999988876555555


Q ss_pred             CCcccE
Q 007998          447 VPGFSY  452 (582)
Q Consensus       447 ~~~~s~  452 (582)
                      ....+|
T Consensus       329 SAti~Y  334 (539)
T PF04184_consen  329 SATICY  334 (539)
T ss_pred             hHHHHH
Confidence            444444

The molecular function of this protein is uncertain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.19  E-value=5.1  Score=37.80  Aligned_cols=142  Identities=17%  Similarity=0.114  Sum_probs=71.5

Q ss_pred             HHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHH
Q 007998          286 AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE  365 (582)
Q Consensus       286 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  365 (582)
                      .....|++.+|..+|+...... .-+...-..+..++...|+.+.|..++..+-..--.........-+..+.+.....+
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~  221 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE  221 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence            3455666666666666665532 112233445556666666666666666655431111111111122334444444443


Q ss_pred             HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCchhHHHHHHHHHhcCC
Q 007998          366 ACDIVKSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG--SNNCGDFVLLSNLYAAYER  428 (582)
Q Consensus       366 A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~  428 (582)
                      ...+-.+..-.| |...--.+...+...|+.+.|.+.+-.+++.+  -.+...-..|+..+..-|.
T Consensus       222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~  287 (304)
T COG3118         222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP  287 (304)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence            334444332334 45555556666666677776666666666543  2344555556666655554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.15  E-value=3.2  Score=37.19  Aligned_cols=182  Identities=15%  Similarity=0.100  Sum_probs=107.0

Q ss_pred             hcCCHHHHHHHHhccc-CCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007998          257 KCGLLDKAFEVFDNIK-CRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL  334 (582)
Q Consensus       257 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~  334 (582)
                      ..|-..-|+--|.+.. ..| -+..||-+.--+...|+++.|.+.|+...+....-+ .+...-.-++--.|++..|.+-
T Consensus        77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d  155 (297)
T COG4785          77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDD  155 (297)
T ss_pred             hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHH
Confidence            3444444554454322 234 456788888888899999999999998887432222 2322222244457888888877


Q ss_pred             HHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-
Q 007998          335 FNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN-  412 (582)
Q Consensus       335 ~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-  412 (582)
                      +...-+ ..-.|-...|--++.   +.-++.+|..-+.+--...|..-|...|-.+.- |++. .+.+++++.+-..++ 
T Consensus       156 ~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~  230 (297)
T COG4785         156 LLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNT  230 (297)
T ss_pred             HHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchH
Confidence            666655 222333333433322   344566776554332113456667665554432 2211 223444444433332 


Q ss_pred             ------chhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          413 ------CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       413 ------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                            ..+|.-|+.-|...|..++|..+|+.....++
T Consensus       231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV  268 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence                  35888899999999999999999998776544

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=94.10  E-value=8.5  Score=39.97  Aligned_cols=378  Identities=10%  Similarity=0.026  Sum_probs=220.5

Q ss_pred             HHHHHhcCCC-CCHHHHHHHHhcCC--CCChh-HHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHH-h
Q 007998           46 IIEFYALSPL-NELAYAHALFRQIN--APSTN-DFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACA-R  120 (582)
Q Consensus        46 ~~~li~~y~~-g~~~~A~~~f~~~~--~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~  120 (582)
                      |+.||.--.+ .+++.++.+.+.+-  -|... -|-.....=.+.|..+.+.++|++-+.. ++-+...|...+.-+. .
T Consensus        48 wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~  126 (577)
T KOG1258|consen   48 WTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNN  126 (577)
T ss_pred             hHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhcc
Confidence            5666665555 66677777777764  35554 3555555556778888899999888764 4555556665554443 5


Q ss_pred             cCChHHHHHHHHHHHHc-CCC-CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHH---hC------CC
Q 007998          121 VLALFETLQIHSHVLRH-GFL-ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLA---QG------NL  189 (582)
Q Consensus       121 ~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~---~~------g~  189 (582)
                      .|+.+..+..|+.++.. |.. .....|...|.--..++++.....+++++.+-....++..-.-|.   +.      -.
T Consensus       127 ~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~  206 (577)
T KOG1258|consen  127 NGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLS  206 (577)
T ss_pred             CCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcC
Confidence            67778888888887763 321 234467777777777888888888888886654444444443333   22      22


Q ss_pred             hhHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHhc-cCCcHHHHHH------------------------HHHHHHc--
Q 007998          190 ASEAVDLFKRMKME---GVFKPNEVTVLGALAACGH-LGAWKEGDKI------------------------HEYIREE--  239 (582)
Q Consensus       190 ~~~A~~~~~~m~~~---g~~~pd~~t~~~ll~a~~~-~~~~~~a~~~------------------------~~~~~~~--  239 (582)
                      .+++.++-......   +...+.......-+.-... .+..+++..+                        ++.-++.  
T Consensus       207 ~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpY  286 (577)
T KOG1258|consen  207 IDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPY  286 (577)
T ss_pred             HHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccc
Confidence            34444443332210   0001112222222221111 1112222211                        1111111  


Q ss_pred             ----C-CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC--CC
Q 007998          240 ----R-LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV--KP  310 (582)
Q Consensus       240 ----~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p  310 (582)
                          + ..++..+|...++.-.+.|+.+.+.-+|++..  +..=...|-..+.-....|+.+-|-.++....+--+  .|
T Consensus       287 fhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~  366 (577)
T KOG1258|consen  287 FHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP  366 (577)
T ss_pred             cccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence                0 11245677777777888888888888888765  122233455555555555777777777666554322  22


Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh-hhHHhhhhHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHH
Q 007998          311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM-KHYGSVVDLLGRAGRLQEAC---DIVKSV-SMGTDMVLWQTL  385 (582)
Q Consensus       311 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l  385 (582)
                      ....+.+.  -+-..|+...|..+++.....-  |+. ..-..-+....+.|..+.+.   +++... +.+-+......+
T Consensus       367 ~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l  442 (577)
T KOG1258|consen  367 IIHLLEAR--FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKL  442 (577)
T ss_pred             HHHHHHHH--HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHH
Confidence            22222222  3456789999999999998832  442 33333455667888888887   555443 222233333333


Q ss_pred             HH-----HHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998          386 LG-----ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER  428 (582)
Q Consensus       386 l~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  428 (582)
                      .-     -+...++.+.|..++.++.+..|++...|..+++.....+.
T Consensus       443 ~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  443 YVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence            22     23456789999999999999999999999999888877664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.08  E-value=9.9  Score=40.72  Aligned_cols=89  Identities=20%  Similarity=0.354  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHH
Q 007998          294 PRALELFEQMGRAGVKP-----DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD  368 (582)
Q Consensus       294 ~~A~~~~~~m~~~g~~p-----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  368 (582)
                      +..+++|.+.....+-|     ........+..|.+.|-+++-.-++.+|-.        ++.+|.-.--+.+++++|.+
T Consensus       611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmGn--------~k~AL~lII~el~die~AIe  682 (846)
T KOG2066|consen  611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMGN--------AKEALKLIINELRDIEKAIE  682 (846)
T ss_pred             hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhcc--------hHHHHHHHHHHhhCHHHHHH
Confidence            45556665554433222     112233444555555555555544444421        22222222334455555665


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcC
Q 007998          369 IVKSVSMGTDMVLWQTLLGACQLYG  393 (582)
Q Consensus       369 ~~~~~~~~p~~~~~~~ll~~~~~~g  393 (582)
                      +.++-   .|...|..||..+...-
T Consensus       683 fvKeq---~D~eLWe~LI~~~ldkP  704 (846)
T KOG2066|consen  683 FVKEQ---DDSELWEDLINYSLDKP  704 (846)
T ss_pred             HHHhc---CCHHHHHHHHHHhhcCc
Confidence            55543   37778888887766543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.05  E-value=1.2  Score=42.81  Aligned_cols=47  Identities=17%  Similarity=0.137  Sum_probs=21.2

Q ss_pred             HhCCChhHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHhccCCcHHHHH
Q 007998          185 AQGNLASEAVDLFKRMKMEGV-FKPNEVTVLGALAACGHLGAWKEGDK  231 (582)
Q Consensus       185 ~~~g~~~~A~~~~~~m~~~g~-~~pd~~t~~~ll~a~~~~~~~~~a~~  231 (582)
                      .+..+.++|+..+.+-+..-- ...-..+|..+..+.+..|.++++..
T Consensus        17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~   64 (518)
T KOG1941|consen   17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK   64 (518)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence            345556666666655543210 01112244444555555555554443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.92  E-value=0.25  Score=41.24  Aligned_cols=112  Identities=16%  Similarity=0.164  Sum_probs=75.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC--------ccc
Q 007998          383 QTLLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVP--------GFS  451 (582)
Q Consensus       383 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------~~s  451 (582)
                      -.-.....+.|+++.|.+.|+.+...-|..   ..+...|+.+|.+.|++++|...+++..+.....+.        |.+
T Consensus        14 y~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   14 YQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            333445567899999999999999987754   457788999999999999999999999987665332        111


Q ss_pred             EE-EECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccC
Q 007998          452 YI-EVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYAAG  494 (582)
Q Consensus       452 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd  494 (582)
                      .. ...+.++.|...++.......++..++++...-....|.+|
T Consensus        94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            11 22344445553344444566677767666665555555444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.83  E-value=3.5  Score=34.66  Aligned_cols=41  Identities=12%  Similarity=0.263  Sum_probs=18.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC
Q 007998          250 AVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH  290 (582)
Q Consensus       250 ~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~  290 (582)
                      .++..+.+.+.......+++.+.  ...+....|.++..|++.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~   54 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence            34444444455555555554432  012333445555555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.81  E-value=1.6  Score=41.60  Aligned_cols=154  Identities=14%  Similarity=0.085  Sum_probs=97.1

Q ss_pred             hcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH--HHHHH--HHHHHcCCCHHH
Q 007998          257 KCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV--SYLAA--LCACNHAGLVDD  330 (582)
Q Consensus       257 ~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~l--l~a~~~~g~~~~  330 (582)
                      ..|+.-+|-..++++.  .+.|..+|+.-=.+|..+|+.+.-...+++..-. ..||..  +|..=  .-++...|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            4566666666666654  3568888888888888888888888888887653 344543  23222  224457788888


Q ss_pred             HHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHH
Q 007998          331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTD-------MVLWQTLLGACQLYGDVEMAEIASR  403 (582)
Q Consensus       331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~~  403 (582)
                      |++.-++..+-+ +.|.-.-.++...+--.|++.++.+++.+-...-+       ..-|.. .-.+...+.++.|+++|+
T Consensus       194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHHHH
Confidence            888877777622 23445555677777788888888888876632111       112222 223344578888888887


Q ss_pred             HHH--HcCCCCc
Q 007998          404 KLV--EMGSNNC  413 (582)
Q Consensus       404 ~~~--~~~p~~~  413 (582)
                      +-+  ++..+|.
T Consensus       272 ~ei~k~l~k~Da  283 (491)
T KOG2610|consen  272 REIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHhhccch
Confidence            632  3444454

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.64  E-value=1.6  Score=44.74  Aligned_cols=58  Identities=17%  Similarity=0.143  Sum_probs=27.5

Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 007998          142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG  204 (582)
Q Consensus       142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  204 (582)
                      +...|..|.+...++|+++-|++.|.+..     -|..|+-.|.-.|+.+.-.++.+.....|
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            44455555555555555555555555543     23444444445555544444444444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.55  E-value=4  Score=34.34  Aligned_cols=84  Identities=19%  Similarity=0.191  Sum_probs=40.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhH
Q 007998          113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASE  192 (582)
Q Consensus       113 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~  192 (582)
                      .++..+...+........++.+.+.+ ..+....+.++..|++..+ ++....++.  ..+.......++.|.+.+.+++
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~   87 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE   87 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence            44444544555555666666655554 2455566666666665432 233333331  1122222334455555555555


Q ss_pred             HHHHHHHH
Q 007998          193 AVDLFKRM  200 (582)
Q Consensus       193 A~~~~~~m  200 (582)
                      +.-++.++
T Consensus        88 ~~~l~~k~   95 (140)
T smart00299       88 AVELYKKD   95 (140)
T ss_pred             HHHHHHhh
Confidence            55555444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.48  E-value=5.6  Score=36.37  Aligned_cols=144  Identities=15%  Similarity=0.124  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC--CCCH---HHHHHHHH
Q 007998          246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGV--KPDD---VSYLAALC  320 (582)
Q Consensus       246 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~---~t~~~ll~  320 (582)
                      ..++--..+|..+|.++.|-..+++..             -...+-++++|+++|++...-=.  ..+.   ..+..+-.
T Consensus        92 dl~eKAs~lY~E~GspdtAAmaleKAa-------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr  158 (308)
T KOG1585|consen   92 DLYEKASELYVECGSPDTAAMALEKAA-------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR  158 (308)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHH-------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            345555667777777776666555432             01234456666666666543100  0111   12333444


Q ss_pred             HHHcCCCHHHHHHHHHHHhHc----CCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC---C-C-CC-CHHHHHHHHHHH
Q 007998          321 ACNHAGLVDDGVRLFNSMANC----GVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV---S-M-GT-DMVLWQTLLGAC  389 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~---~-~-~p-~~~~~~~ll~~~  389 (582)
                      .+.+...+++|-..+.+-...    .--++ -..|-..|-.|.-..++..|.+.++.-   | + .| |..+...|+.+|
T Consensus       159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay  238 (308)
T KOG1585|consen  159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY  238 (308)
T ss_pred             HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence            555666666665555433220    00122 133455566677778899999999873   2 1 22 677888888887


Q ss_pred             HhcCChHHHHHHHH
Q 007998          390 QLYGDVEMAEIASR  403 (582)
Q Consensus       390 ~~~g~~~~a~~~~~  403 (582)
                      - .|+.+++..++.
T Consensus       239 d-~gD~E~~~kvl~  251 (308)
T KOG1585|consen  239 D-EGDIEEIKKVLS  251 (308)
T ss_pred             c-cCCHHHHHHHHc
Confidence            5 567777666553

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.23  E-value=1.9  Score=40.08  Aligned_cols=101  Identities=15%  Similarity=0.058  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhHcC--CccChhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMANCG--VKPNMKHYGSVVDLLGRAGRLQEACDIVKSV----SMGT-DMVLWQTLL  386 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll  386 (582)
                      .|+..+..+ ..|++..|...|...++..  -......+--|...+...|++++|..+|..+    |..| -+..+--|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            455555443 3455777777777766611  0111223334677777777777777776655    3333 235556666


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998          387 GACQLYGDVEMAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       387 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  415 (582)
                      ......|+.++|...++++.+.-|+.+.+
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            67778888888888888888888866543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.92  E-value=7.7  Score=35.90  Aligned_cols=174  Identities=15%  Similarity=0.122  Sum_probs=97.5

Q ss_pred             HHhcCCHHHHHHHHhccc-C----CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc-CCCCCH--HHHHHHHHHHHc--
Q 007998          255 YAKCGLLDKAFEVFDNIK-C----RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDD--VSYLAALCACNH--  324 (582)
Q Consensus       255 y~~~g~~~~A~~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~~ll~a~~~--  324 (582)
                      -.+.|++++|.+.|+.+. .    +-...+--.++-++.+.+++++|+..+++.... +-.||.  ..|...+.-+..  
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~  123 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID  123 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence            346788888888888775 1    112334445566777788888888888877663 223332  233333332221  


Q ss_pred             --CCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHHHH
Q 007998          325 --AGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLW--QTLLGACQLYGDVEMAE  399 (582)
Q Consensus       325 --~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~  399 (582)
                        ..+...+...+..+.+ -.--||..             -...|..-+..+.   |....  ..+..-|.+.|.+..|.
T Consensus       124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~AA~  187 (254)
T COG4105         124 DVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVAAI  187 (254)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHHHH
Confidence              1222233333333322 00012211             1111111111110   11111  23456788999999999


Q ss_pred             HHHHHHHHcCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          400 IASRKLVEMGSNNC---GDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       400 ~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      .-++++++.-|+.+   ..+..+.++|...|..++|.+.-+-+...-.
T Consensus       188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p  235 (254)
T COG4105         188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP  235 (254)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence            99999999866543   4666788899999999999998877765443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.89  E-value=3.3  Score=39.98  Aligned_cols=42  Identities=10%  Similarity=0.132  Sum_probs=25.0

Q ss_pred             hcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCChhHHHHH
Q 007998          155 KVGEIVSAKKVFDEMGVR------DIASWNALIAGLAQGNLASEAVDL  196 (582)
Q Consensus       155 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~  196 (582)
                      ...+.++|+..+.+..++      -..++..+..+..+.|.+++++..
T Consensus        18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~   65 (518)
T KOG1941|consen   18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF   65 (518)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence            456667777666554432      123555666677777777766554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.85  E-value=6.1  Score=41.06  Aligned_cols=158  Identities=13%  Similarity=0.091  Sum_probs=103.0

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhcC-CCCCH-----HHHHHHHHHHHc----CCCHHHHHHHHHHHhHcCCccChhhHH
Q 007998          282 TMVMAFAVHGDGPRALELFEQMGRAG-VKPDD-----VSYLAALCACNH----AGLVDDGVRLFNSMANCGVKPNMKHYG  351 (582)
Q Consensus       282 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~  351 (582)
                      .++....-.|+-+.+++.+.+..+.+ +.-..     .+|..++..+..    ....+.+.++++.+.+.  -|+...|.
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl  270 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL  270 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence            44555555677777777777765422 22111     123334433332    45678899999988872  36655554


Q ss_pred             hh-hhHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH-HHHHHH
Q 007998          352 SV-VDLLGRAGRLQEACDIVKSVSM-G-----TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV-LLSNLY  423 (582)
Q Consensus       352 ~l-i~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~  423 (582)
                      .. ...+...|++++|.+.|++.-. +     -....+--+...+....++++|...|.++.+.+.-....|. ..+.++
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~  350 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL  350 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            32 3556778999999999986521 1     12334445566677889999999999999998765555665 445556


Q ss_pred             HhcCCc-------hHHHHHHHHHHh
Q 007998          424 AAYERW-------DDVGRVRKAMKN  441 (582)
Q Consensus       424 ~~~g~~-------~~a~~~~~~m~~  441 (582)
                      ...|+.       ++|..++++...
T Consensus       351 ~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  351 LMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HhhccchhhhhhHHHHHHHHHHHHH
Confidence            788888       888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.17  E-value=1.4  Score=42.03  Aligned_cols=159  Identities=9%  Similarity=-0.025  Sum_probs=116.0

Q ss_pred             hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhh----hhHHhhcCCHH
Q 007998          289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV----VDLLGRAGRLQ  364 (582)
Q Consensus       289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~  364 (582)
                      -+|+..+|-..++++.+. .+.|...+.-.=.+|...|+.+.-...++++... ..|+...|..+    .-++..+|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            478888999999998875 4556677777788999999999999999988862 24555444433    33455799999


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998          365 EACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN----NCGDFVLLSNLYAAYERWDDVGRVRKA  438 (582)
Q Consensus       365 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~  438 (582)
                      +|++.-++. .++| |.-.-.++....-..|+..++.++..+-...=..    -...|-..+-.|...+.++.|+.+|++
T Consensus       193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            999998876 5555 6666677778888899999998887765332111    123455666677788999999999997


Q ss_pred             HHhCCCccCCc
Q 007998          439 MKNRDVKKVPG  449 (582)
Q Consensus       439 m~~~~~~~~~~  449 (582)
                      =.-+.+.+..+
T Consensus       273 ei~k~l~k~Da  283 (491)
T KOG2610|consen  273 EIWKRLEKDDA  283 (491)
T ss_pred             HHHHHhhccch
Confidence            66555555544

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.12  E-value=5.5  Score=42.89  Aligned_cols=175  Identities=14%  Similarity=0.093  Sum_probs=92.5

Q ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHH
Q 007998          213 VLGALAACGHLGAWKEGDKIHEYIREERLDMN--VVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFA  288 (582)
Q Consensus       213 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~  288 (582)
                      ...-+....+...++.|..+-   ...+.+++  ..+.....+-+.+.|++++|...|-+-.  .+|..     +|.-|.
T Consensus       337 le~kL~iL~kK~ly~~Ai~LA---k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~-----Vi~kfL  408 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLA---KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE-----VIKKFL  408 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH-----HHHHhc
Confidence            444455555555555555443   22333322  2233334445556777777776665432  12222     344445


Q ss_pred             hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCc-cChhhHHhhhhHHhhcCCHHHHH
Q 007998          289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVK-PNMKHYGSVVDLLGRAGRLQEAC  367 (582)
Q Consensus       289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~  367 (582)
                      ......+-..+++.+.+.|+.-...| ..|+.+|.+.++.+.-.++.+.-.+ |.. .|.   ...+..+.+.+-+++|.
T Consensus       409 daq~IknLt~YLe~L~~~gla~~dht-tlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~---e~al~Ilr~snyl~~a~  483 (933)
T KOG2114|consen  409 DAQRIKNLTSYLEALHKKGLANSDHT-TLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDV---ETALEILRKSNYLDEAE  483 (933)
T ss_pred             CHHHHHHHHHHHHHHHHcccccchhH-HHHHHHHHHhcchHHHHHHHhcCCC-cceeeeH---HHHHHHHHHhChHHHHH
Confidence            55556666667777777775433322 3577777777777776665544331 211 122   23455666667777776


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998          368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL  405 (582)
Q Consensus       368 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  405 (582)
                      -+-.+...  +......++   -..+++++|.+.++.+
T Consensus       484 ~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  484 LLATKFKK--HEWVLDILL---EDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence            66665543  233333333   3456777777776643

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.97  E-value=5.2  Score=38.57  Aligned_cols=61  Identities=21%  Similarity=0.328  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHcCCC--HHHHHHHHHHHhHcCCccChhhHHhhh
Q 007998          294 PRALELFEQMGRAGVKPDD--VSYLAALCACNHAGL--VDDGVRLFNSMANCGVKPNMKHYGSVV  354 (582)
Q Consensus       294 ~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li  354 (582)
                      +.+..+|+.+.+.|+..+.  ...+.+|..+.....  ...+..+++.+.+.|+++...+|..+.
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence            4566777777777766554  344444444333222  347778888888888888877776543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=91.93  E-value=2.4  Score=34.56  Aligned_cols=85  Identities=18%  Similarity=-0.003  Sum_probs=37.9

Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHhcCC
Q 007998          184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVV---VCNAVIDMYAKCGL  260 (582)
Q Consensus       184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~y~~~g~  260 (582)
                      .+..|+.++|++.|.+.+..-  +.....|+.-..++.-.|+.++|..-+++.++..-.-+..   .|..-...|...|+
T Consensus        53 laE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            344455555555555544332  3344455555555555555555555444444422111111   11122233455555


Q ss_pred             HHHHHHHHhc
Q 007998          261 LDKAFEVFDN  270 (582)
Q Consensus       261 ~~~A~~~~~~  270 (582)
                      .+.|+.-|+.
T Consensus       131 dd~AR~DFe~  140 (175)
T KOG4555|consen  131 DDAARADFEA  140 (175)
T ss_pred             hHHHHHhHHH
Confidence            5555555543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.85  E-value=0.55  Score=30.33  Aligned_cols=37  Identities=19%  Similarity=0.175  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVL  214 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~  214 (582)
                      +|..+...|.+.|++++|.++|++.++..  +-|...+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~   39 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWR   39 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHH
Confidence            46666777777777777777777777663  33444433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.76  E-value=0.68  Score=40.68  Aligned_cols=88  Identities=16%  Similarity=0.131  Sum_probs=67.2

Q ss_pred             HhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCc
Q 007998          357 LGRAGRLQEACDIVKSV-SMGT------DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW  429 (582)
Q Consensus       357 ~~~~g~~~~A~~~~~~~-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  429 (582)
                      +...|++++|..-|... ..-|      -...|..-..+..+.+.++.|+.-..+.++++|....+...-+.+|.+..++
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~  184 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY  184 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence            45677777777766654 1112      2334555556778889999999999999999998888888888999999999


Q ss_pred             hHHHHHHHHHHhCCC
Q 007998          430 DDVGRVRKAMKNRDV  444 (582)
Q Consensus       430 ~~a~~~~~~m~~~~~  444 (582)
                      ++|+.-++.+.+...
T Consensus       185 eealeDyKki~E~dP  199 (271)
T KOG4234|consen  185 EEALEDYKKILESDP  199 (271)
T ss_pred             HHHHHHHHHHHHhCc
Confidence            999999998887654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.58  E-value=13  Score=35.58  Aligned_cols=18  Identities=6%  Similarity=-0.337  Sum_probs=10.8

Q ss_pred             HHHhcCChHHHHHHHHHH
Q 007998          388 ACQLYGDVEMAEIASRKL  405 (582)
Q Consensus       388 ~~~~~g~~~~a~~~~~~~  405 (582)
                      .+.+.++++.|.+.|+-.
T Consensus       255 ~~~~~k~y~~A~~w~~~a  272 (278)
T PF08631_consen  255 KHYKAKNYDEAIEWYELA  272 (278)
T ss_pred             HHHhhcCHHHHHHHHHHH
Confidence            345566677776666643

It is also involved in sporulation [].

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.54  E-value=7.6  Score=33.23  Aligned_cols=88  Identities=15%  Similarity=0.143  Sum_probs=51.0

Q ss_pred             HHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHH
Q 007998          321 ACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS-MGTDMVLWQTLLGACQLYGDVEMA  398 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a  398 (582)
                      .-...++.+++..++..+.- +.-.|...++.  ...+.+.|++.+|..+|+++. ..|....-.+|+..|....+-..=
T Consensus        19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W   96 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW   96 (160)
T ss_pred             HHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence            33456677777777777765 22122233333  334567788888888888772 234444445666666555554555


Q ss_pred             HHHHHHHHHcCC
Q 007998          399 EIASRKLVEMGS  410 (582)
Q Consensus       399 ~~~~~~~~~~~p  410 (582)
                      ....+++++.++
T Consensus        97 r~~A~evle~~~  108 (160)
T PF09613_consen   97 RRYADEVLESGA  108 (160)
T ss_pred             HHHHHHHHhcCC
Confidence            555666666665

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.23  E-value=17  Score=37.15  Aligned_cols=17  Identities=24%  Similarity=0.073  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHcCCCCc
Q 007998          397 MAEIASRKLVEMGSNNC  413 (582)
Q Consensus       397 ~a~~~~~~~~~~~p~~~  413 (582)
                      .|.+++.++.+.+|..+
T Consensus       364 ~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  364 NAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             HHHHHHHHHHHhCCCCc
Confidence            46678888888888654

The molecular function of this protein is uncertain.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.16  E-value=1.2  Score=41.97  Aligned_cols=61  Identities=16%  Similarity=0.178  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      ++..++..+...|+.+.+...++++.+.+|-+...|..+..+|.+.|+...|...++.+.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            4556667777778888888888888888888888888888888888888888888877754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.78  E-value=15  Score=34.79  Aligned_cols=56  Identities=11%  Similarity=0.138  Sum_probs=41.8

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 007998          116 KACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR  172 (582)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~  172 (582)
                      ......|++.++..++..+...... +....-.++.+|...|+.+.|..+++.++..
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~  197 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ  197 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence            3455778888888888888776533 4556667888888888888888888888754

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=90.74  E-value=10  Score=32.84  Aligned_cols=133  Identities=13%  Similarity=0.121  Sum_probs=70.0

Q ss_pred             HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhc-CCHHHHHHHHhhcC
Q 007998           93 VLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL-LGTTLLDVYAKV-GEIVSAKKVFDEMG  170 (582)
Q Consensus        93 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~-g~~~~A~~~f~~m~  170 (582)
                      ++.++.+.+.+++|+...+..+++.+.+.|.+..-.+    ++..++-+|.. +-..|++.-.+. .-..-|..++.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            3455555666777777777777777777777654443    33444333332 333332221111 01233444444443


Q ss_pred             CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 007998          171 VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE  238 (582)
Q Consensus       171 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~  238 (582)
                          ..+..++..+...|++-+|+.+.+.....     +......++.+..+.++...-..++....+
T Consensus        90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                24555667777888888888877664322     112224455555555555555555554443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.72  E-value=2.3  Score=40.24  Aligned_cols=77  Identities=14%  Similarity=0.238  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----cCCCCCHHHHHH
Q 007998          245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR-----AGVKPDDVSYLA  317 (582)
Q Consensus       245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~  317 (582)
                      ..++..++..+..+|+.+.+...++++.  .+-|...|..++.+|.+.|+...|+..|+++.+     .|+.|...+...
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            4467788999999999999999998875  355788999999999999999999999998865     477787766555


Q ss_pred             HHHH
Q 007998          318 ALCA  321 (582)
Q Consensus       318 ll~a  321 (582)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4444

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.57  E-value=0.5  Score=28.96  Aligned_cols=26  Identities=19%  Similarity=0.051  Sum_probs=15.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998          382 WQTLLGACQLYGDVEMAEIASRKLVE  407 (582)
Q Consensus       382 ~~~ll~~~~~~g~~~~a~~~~~~~~~  407 (582)
                      |..|...|.+.|++++|++++++.+.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45566666666666666666666443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=90.56  E-value=0.56  Score=28.06  Aligned_cols=31  Identities=23%  Similarity=0.177  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998          381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSN  411 (582)
Q Consensus       381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  411 (582)
                      +|..+...+...|++++|...|++.++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            5666677777788888888888888777763

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.56  E-value=29  Score=37.73  Aligned_cols=170  Identities=14%  Similarity=0.063  Sum_probs=94.1

Q ss_pred             HHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHH----HHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 007998           49 FYALSPL-NELAYAHALFRQINAPSTNDFNAVL----RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA  123 (582)
Q Consensus        49 li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  123 (582)
                      -+++..+ .-++.|..+-..-.- |...-..+.    +-+-+.|++++|...|-+-... +.|.     .+++-+.....
T Consensus       340 kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~  412 (933)
T KOG2114|consen  340 KLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQR  412 (933)
T ss_pred             HHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHH
Confidence            3444444 666666666654432 222222333    3445678999998888776543 3332     34555555555


Q ss_pred             hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007998          124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIA-SWNALIAGLAQGNLASEAVDLFKRMKM  202 (582)
Q Consensus       124 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~  202 (582)
                      +..-..+++.+.+.|+. +..--+.|+++|.+.++.++-.+..+........ -....+..+.+.+-.++|.-+-.+...
T Consensus       413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~  491 (933)
T KOG2114|consen  413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK  491 (933)
T ss_pred             HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence            55566677777788865 3444567889999999988888877766521110 123344555555555555544333321


Q ss_pred             cCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHH
Q 007998          203 EGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY  235 (582)
Q Consensus       203 ~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~  235 (582)
                            .......++   -..+++++|.++++.
T Consensus       492 ------he~vl~ill---e~~~ny~eAl~yi~s  515 (933)
T KOG2114|consen  492 ------HEWVLDILL---EDLHNYEEALRYISS  515 (933)
T ss_pred             ------CHHHHHHHH---HHhcCHHHHHHHHhc
Confidence                  222222222   244566666666554

>PRK09687 putative lyase; Provisional

Probab=90.51  E-value=17  Score=34.87  Aligned_cols=240  Identities=11%  Similarity=-0.001  Sum_probs=133.0

Q ss_pred             HHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCC
Q 007998           64 LFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL----FETLQIHSHVLRHGF  139 (582)
Q Consensus        64 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~  139 (582)
                      +++.+..+|.......+.++...|. .++...+..+..   .+|...=...+.+++..|+.    .++...+..+...  
T Consensus        28 L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--  101 (280)
T PRK09687         28 LFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--  101 (280)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--
Confidence            3334456777777777777777764 445555555543   23555555666777777763    3455555554333  


Q ss_pred             CCchHHHHHHHHHHHhcCCH-----HHHHHHHhh-cCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHH
Q 007998          140 LADALLGTTLLDVYAKVGEI-----VSAKKVFDE-MGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV  213 (582)
Q Consensus       140 ~~~~~~~~~li~~y~~~g~~-----~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~  213 (582)
                      +++..+....+.+++..+.-     ..+...+.. +..++...-...+.++.+.++ ++|+..+-.+.+.    +|...-
T Consensus       102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR  176 (280)
T PRK09687        102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVR  176 (280)
T ss_pred             CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHH
Confidence            55667776677777665431     223333322 233455555556666666665 4566666666643    333444


Q ss_pred             HHHHHHHhccC-CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCC
Q 007998          214 LGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGD  292 (582)
Q Consensus       214 ~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~  292 (582)
                      ...+.++.+.+ ....+...+..++.   +++..+...-+.++.+.|+.+-.-.+.+.+. .+++  .-..+.++...|.
T Consensus       177 ~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig~  250 (280)
T PRK09687        177 NWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELGD  250 (280)
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcCC
Confidence            44444555443 23344444444442   4466677777777777777544444444444 4442  3356666777776


Q ss_pred             hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007998          293 GPRALELFEQMGRAGVKPDDVSYLAALCACN  323 (582)
Q Consensus       293 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~  323 (582)
                      . +|+..+.++.+.  .||...-...+.+|.
T Consensus       251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~  278 (280)
T PRK09687        251 K-TLLPVLDTLLYK--FDDNEIITKAIDKLK  278 (280)
T ss_pred             H-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence            4 577777776653  346555555555543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.27  E-value=15  Score=34.02  Aligned_cols=60  Identities=15%  Similarity=0.001  Sum_probs=34.2

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998          181 IAGLAQGNLASEAVDLFKRMKMEGVF-KPNEVTVLGALAACGHLGAWKEGDKIHEYIREER  240 (582)
Q Consensus       181 i~~~~~~g~~~~A~~~~~~m~~~g~~-~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~  240 (582)
                      +..-.+.|++++|.+.|+.+...-.. +-...+...++-++-+.+++++|....++.++.-
T Consensus        41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            34445667777777777777654211 1123344445555666666666666666666543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=90.22  E-value=7.8  Score=37.41  Aligned_cols=61  Identities=10%  Similarity=0.033  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHhCCCCCChhHHHHHHHHHHh--c----CChHHHHHHHHHHHHcCC---CCchHHHHHHH
Q 007998           90 TNAVLWYRQMLRGSHRSDALTCSFALKACAR--V----LALFETLQIHSHVLRHGF---LADALLGTTLL  150 (582)
Q Consensus        90 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~g~---~~~~~~~~~li  150 (582)
                      ++.+.+++.|.+.|.+-+.++|.+..-....  .    .....+.++|+.|.+..+   .++..++.+|+
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lL  148 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALL  148 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHH
Confidence            3456777788888888777776654433322  1    124456777777776542   23334444443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.01  E-value=21  Score=35.32  Aligned_cols=66  Identities=12%  Similarity=0.095  Sum_probs=55.7

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS----NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       377 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      ....+|..+...+++.|+++.|...+.++...++    ..+.....-+......|+..+|...++...+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3567899999999999999999999999988652    24567778889999999999999998887763

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=89.98  E-value=57  Score=40.14  Aligned_cols=310  Identities=12%  Similarity=0.029  Sum_probs=168.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCC--CCchHHHHHHHHHHHhcCCHHHHHHHHh-hcCCCChhHHHHHHHHHHhCCCh
Q 007998          114 ALKACARVLALFETLQIHSHVLRHGF--LADALLGTTLLDVYAKVGEIVSAKKVFD-EMGVRDIASWNALIAGLAQGNLA  190 (582)
Q Consensus       114 ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~-~m~~~~~~~~~~li~~~~~~g~~  190 (582)
                      +..+--+.+.+.+|...++.-.....  ......+..+...|+.-+++|....+.. ....++.   ..-|......|++
T Consensus      1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGNW 1465 (2382)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhccH
Confidence            33444566777777777766311000  1122345556668999999888887776 3434432   2345556678999


Q ss_pred             hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCCHHHHHHHHh
Q 007998          191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVC-NAVIDMYAKCGLLDKAFEVFD  269 (582)
Q Consensus       191 ~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~  269 (582)
                      +.|..-|+++.+.+  ++...+++.++......+.++...-..+...... .+...-+ +.=+.+--+.++++..+....
T Consensus      1466 ~da~~Cye~~~q~~--p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD--PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred             HHHHHHHHHhhcCC--CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence            99999999998876  5557788888887777777777666444443322 2222222 333444456666666655544


Q ss_pred             cccCCCCHHHHHHH--HHHHHhCCC--hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH---------H
Q 007998          270 NIKCRKSLVTWNTM--VMAFAVHGD--GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF---------N  336 (582)
Q Consensus       270 ~~~~~~~~~~~~~l--i~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~---------~  336 (582)
                          ..+..+|.+.  +....+..+  .-.-.+..+.+.+.-+.        =+.+|+..|.+..+.++.         +
T Consensus      1543 ----~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~--------~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1543 ----DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIE--------NLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred             ----cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhh--------hHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence                2344445443  222222211  11111233333221111        122233222222221111         1


Q ss_pred             HHhH--cCCccChhh------HH---hhhhHHhhcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHhcCChHHHH
Q 007998          337 SMAN--CGVKPNMKH------YG---SVVDLLGRAGRLQEACD-IVKSVSMGT-----DMVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       337 ~~~~--~~~~~~~~~------~~---~li~~~~~~g~~~~A~~-~~~~~~~~p-----~~~~~~~ll~~~~~~g~~~~a~  399 (582)
                      .+.+  .+..++..+      |.   ..++-+.+....--|.+ .+.....+|     -..+|-.....++..|.++.|.
T Consensus      1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred             HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence            1111  222332221      11   11222222222222211 111111122     3568999999999999999999


Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ...-.+.+..+  +..+.-.+......|+-..|..+++...+..
T Consensus      1691 nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             HHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            98888877763  4688999999999999999999999887544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=89.83  E-value=41  Score=38.25  Aligned_cols=89  Identities=15%  Similarity=0.113  Sum_probs=53.8

Q ss_pred             CCCHHH----HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh--
Q 007998          274 RKSLVT----WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM--  347 (582)
Q Consensus       274 ~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--  347 (582)
                      .|+...    |.+...-+.+...+++|.-.|+..-+         .--.+.+|..+|+|.+|..+..++..   ..+.  
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~  999 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELV  999 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHH
Confidence            455444    34444444556777777777665422         12356677778888888877776653   1121  


Q ss_pred             hhHHhhhhHHhhcCCHHHHHHHHHhCC
Q 007998          348 KHYGSVVDLLGRAGRLQEACDIVKSVS  374 (582)
Q Consensus       348 ~~~~~li~~~~~~g~~~~A~~~~~~~~  374 (582)
                      .+-..|+.-+...++.-+|-++..+..
T Consensus      1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             HHHHHHHHHHHHcccchhHHHHHHHHh
Confidence            222456677777788777777777663

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.54  E-value=23  Score=35.06  Aligned_cols=149  Identities=9%  Similarity=0.018  Sum_probs=75.0

Q ss_pred             CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh--hh
Q 007998          275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP---DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM--KH  349 (582)
Q Consensus       275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~--~~  349 (582)
                      ....+|..++..+.+.|.++.|...+.++...+..+   +......-....-..|+..+|...++......+..+.  ..
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            345567777888888888888888888776643111   1122222333445567777777777776662222211  11


Q ss_pred             HHhhhhHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998          350 YGSVVDLLGRAGRLQEACDI-VKSVSMGTDMVLWQTLLGACQLY------GDVEMAEIASRKLVEMGSNNCGDFVLLSNL  422 (582)
Q Consensus       350 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  422 (582)
                      ...+...+..  ..+..... ........-...+..+..-+...      ++.+.+...|+++.+..|.....+..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111000000  00000000 00000000112222233333333      788889999999999999877777777766


Q ss_pred             HHh
Q 007998          423 YAA  425 (582)
Q Consensus       423 ~~~  425 (582)
                      +.+
T Consensus       302 ~~~  304 (352)
T PF02259_consen  302 NDK  304 (352)
T ss_pred             HHH
Confidence            543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=89.47  E-value=43  Score=38.05  Aligned_cols=53  Identities=19%  Similarity=0.166  Sum_probs=27.8

Q ss_pred             CCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 007998          157 GEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG  221 (582)
Q Consensus       157 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~  221 (582)
                      +++++|+.-+.++.   ...|...+..--++|.+.+|+.++         +|+...+..+..+|+
T Consensus       894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly---------~~~~e~~k~i~~~ya  946 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY---------KPDSEKQKVIYEAYA  946 (1265)
T ss_pred             HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee---------ccCHHHHHHHHHHHH
Confidence            44555555555443   223444444444556666665553         566666665555543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=89.13  E-value=0.9  Score=27.79  Aligned_cols=26  Identities=15%  Similarity=0.107  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMK  201 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~  201 (582)
                      +|+.|...|.+.|++++|+++|++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35666677777777777777776643

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.89  E-value=7.8  Score=34.18  Aligned_cols=56  Identities=18%  Similarity=0.081  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCCCC------hhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998          145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRD------IASWNALIAGLAQGNLASEAVDLFKRM  200 (582)
Q Consensus       145 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m  200 (582)
                      .+..+.+.|.+.|+.+.|.+.|.++.+..      +..+-.+|+.....+++..+.....+.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34455555555555555555555554321      223444455555555555555544444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=88.56  E-value=9.8  Score=29.48  Aligned_cols=88  Identities=19%  Similarity=0.206  Sum_probs=62.8

Q ss_pred             ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 007998          123 ALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKM  202 (582)
Q Consensus       123 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  202 (582)
                      .-++|.-+-+.+...+-. ...+--.-+..+.+.|++++|..+.+.+..||...|-++-.  .+.|..+++..-+.+|..
T Consensus        20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~   96 (115)
T TIGR02508        20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA   96 (115)
T ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence            355666666666555422 33333344566788999999999999999999999988765  467777777778888888


Q ss_pred             cCCCCCCHHHHHH
Q 007998          203 EGVFKPNEVTVLG  215 (582)
Q Consensus       203 ~g~~~pd~~t~~~  215 (582)
                      .|  .|...+|..
T Consensus        97 sg--~p~lq~Faa  107 (115)
T TIGR02508        97 SG--DPRLQTFVA  107 (115)
T ss_pred             CC--CHHHHHHHH
Confidence            87  666666544

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=88.20  E-value=3.6  Score=35.19  Aligned_cols=68  Identities=19%  Similarity=0.137  Sum_probs=33.3

Q ss_pred             hcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998          359 RAGRLQEACDIVKSV-SMGTD---MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER  428 (582)
Q Consensus       359 ~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  428 (582)
                      +.++.+++..++..+ -.+|.   ..++...  .+...|++.+|.++++.+.+..|..+..-..++.++...|+
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            445566666665555 22232   2222222  23455666666666666655555544444444444444443

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=87.92  E-value=11  Score=29.29  Aligned_cols=88  Identities=14%  Similarity=0.213  Sum_probs=62.5

Q ss_pred             CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998          225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMG  304 (582)
Q Consensus       225 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  304 (582)
                      ..++|..|-+.+...+-. ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-.  .+.|..+++..-+.+|.
T Consensus        20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALce--~rlGl~s~l~~rl~rla   95 (115)
T TIGR02508        20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-YPDLEPWLALCE--WRLGLGSALESRLNRLA   95 (115)
T ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-CchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence            457777777776655422 33333444566788999999999999998 999999987754  46677777777787887


Q ss_pred             hcCCCCCHHHHHH
Q 007998          305 RAGVKPDDVSYLA  317 (582)
Q Consensus       305 ~~g~~p~~~t~~~  317 (582)
                      ..| .|...+|..
T Consensus        96 ~sg-~p~lq~Faa  107 (115)
T TIGR02508        96 ASG-DPRLQTFVA  107 (115)
T ss_pred             hCC-CHHHHHHHH
Confidence            765 555555543

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.64  E-value=5.6  Score=35.10  Aligned_cols=63  Identities=5%  Similarity=-0.064  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998           74 NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDA--LTCSFALKACARVLALFETLQIHSHVLR  136 (582)
Q Consensus        74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~  136 (582)
                      ..+..+...|.+.|+.++|++.|.++.+....|..  ..+..+++.+...+++..+.....++..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            36778888888888888899888888876544433  3567777888888888888777766654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=87.49  E-value=27  Score=33.39  Aligned_cols=18  Identities=11%  Similarity=0.147  Sum_probs=11.2

Q ss_pred             HHcCCCHHHHHHHHHHHh
Q 007998          322 CNHAGLVDDGVRLFNSMA  339 (582)
Q Consensus       322 ~~~~g~~~~a~~~~~~~~  339 (582)
                      +.+.++++.|.+.|+...
T Consensus       256 ~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  256 HYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHhhcCHHHHHHHHHHHH
Confidence            445677777777666443

It is also involved in sporulation [].

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.28  E-value=3.8  Score=34.43  Aligned_cols=51  Identities=16%  Similarity=0.055  Sum_probs=26.5

Q ss_pred             cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      .++.++++.++..+.-+.|+.+..-..-+..+...|+|++|.+++....+.
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            445555555555555555555554445555555555555555555554443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=87.17  E-value=36  Score=34.39  Aligned_cols=332  Identities=10%  Similarity=0.018  Sum_probs=178.0

Q ss_pred             CCHHHHHHHHhcCCC------------------CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCC----CCChhHHHH
Q 007998           56 NELAYAHALFRQINA------------------PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSH----RSDALTCSF  113 (582)
Q Consensus        56 g~~~~A~~~f~~~~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~  113 (582)
                      +.+..|.+.|..-..                  +|.+-=+..+..+...|++.++..++++|...=.    .-+..+|+.
T Consensus        93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~  172 (549)
T PF07079_consen   93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR  172 (549)
T ss_pred             hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence            888888888765421                  1112224566778889999999999999876433    367788888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH---cCCCCchHHHHHHHHHHHhcCC--------------------------------
Q 007998          114 ALKACARVLALFETLQIHSHVLR---HGFLADALLGTTLLDVYAKVGE--------------------------------  158 (582)
Q Consensus       114 ll~~~~~~~~~~~a~~~~~~~~~---~g~~~~~~~~~~li~~y~~~g~--------------------------------  158 (582)
                      ++-.+++.        .+-++.+   ..+-||   |--+|-.|.+.=.                                
T Consensus       173 ~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l  241 (549)
T PF07079_consen  173 AVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERL  241 (549)
T ss_pred             HHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhc
Confidence            55544432        2222211   112222   1222333322211                                


Q ss_pred             --HHHHHHHHhhc-CCCC-hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---CCCCHHHHHHHHHHHhccCCcHHHHH
Q 007998          159 --IVSAKKVFDEM-GVRD-IASWNALIAGLAQGNLASEAVDLFKRMKMEGV---FKPNEVTVLGALAACGHLGAWKEGDK  231 (582)
Q Consensus       159 --~~~A~~~f~~m-~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~pd~~t~~~ll~a~~~~~~~~~a~~  231 (582)
                        +-.+.+.++.- ..|+ ...-..|+..+.+  +.+++..+-+.+....+   .+-=..+|..++..+.+.++...|.+
T Consensus       242 ~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q  319 (549)
T PF07079_consen  242 PPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQ  319 (549)
T ss_pred             cHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence              11111111111 0121 1122334444444  55666655555543322   01224578999999999999999999


Q ss_pred             HHHHHHHcCCCCchhHHH-------HHHHHHHhcC----CHHHHHHHHhcccCCCCHHH---HHHHHH---HHHhCCC-h
Q 007998          232 IHEYIREERLDMNVVVCN-------AVIDMYAKCG----LLDKAFEVFDNIKCRKSLVT---WNTMVM---AFAVHGD-G  293 (582)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~-------~li~~y~~~g----~~~~A~~~~~~~~~~~~~~~---~~~li~---~~~~~g~-~  293 (582)
                      .+.-+.-.  +|+..+-.       .+.++.+.-.    ++.+=..+++... ..|+..   -.-|+.   -+-+.|. -
T Consensus       320 ~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~q-s~DiDrqQLvh~L~~~Ak~lW~~g~~d  396 (549)
T PF07079_consen  320 YLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQ-SYDIDRQQLVHYLVFGAKHLWEIGQCD  396 (549)
T ss_pred             HHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHH-hhcccHHHHHHHHHHHHHHHHhcCCcc
Confidence            99877664  44444332       2233333111    1222233333333 223221   111222   2334455 7


Q ss_pred             hHHHHHHHHHHhcCCCCCH-HHHHHH----HHHHHc---CCCHHHHHHHHHHHhHcCCccC----hhhHHhhhhH--Hhh
Q 007998          294 PRALELFEQMGRAGVKPDD-VSYLAA----LCACNH---AGLVDDGVRLFNSMANCGVKPN----MKHYGSVVDL--LGR  359 (582)
Q Consensus       294 ~~A~~~~~~m~~~g~~p~~-~t~~~l----l~a~~~---~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~--~~~  359 (582)
                      ++|+.+++...+  +.|.. ..-+.+    =.+|.+   ...+.+-.++-+-+.+.|++|-    .+.-|.|.++  +..
T Consensus       397 ekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys  474 (549)
T PF07079_consen  397 EKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS  474 (549)
T ss_pred             HHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence            899999998886  34433 222222    223322   2334444444444445777763    4556666654  456


Q ss_pred             cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998          360 AGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKL  405 (582)
Q Consensus       360 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  405 (582)
                      .|++.++.-.-.-. .+.|++.+|+-+.-......++++|...+..+
T Consensus       475 qgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  475 QGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             cccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            78888876443322 56789999998888888889999998888755

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.00  E-value=8.6  Score=33.23  Aligned_cols=49  Identities=16%  Similarity=0.145  Sum_probs=22.8

Q ss_pred             hcCCHHHHHHHHhcccCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998          257 KCGLLDKAFEVFDNIKCRKS---LVTWNTMVMAFAVHGDGPRALELFEQMGR  305 (582)
Q Consensus       257 ~~g~~~~A~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (582)
                      ..|.+++.....+.+..+.+   ...-.+|.-+-.+.|++.+|.+.|..+.+
T Consensus       144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            44555555555544431111   12233344444455555555555555544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.87  E-value=1.5  Score=26.13  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998          278 VTWNTMVMAFAVHGDGPRALELFEQMGR  305 (582)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (582)
                      .+|..+...|...|++++|+..|++.++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            3566666667777777777777766665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.08  E-value=8.1  Score=36.72  Aligned_cols=97  Identities=12%  Similarity=0.210  Sum_probs=71.0

Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCC--------CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC
Q 007998          240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK--------SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD  311 (582)
Q Consensus       240 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  311 (582)
                      |.+....+...++..-....+++++...+-++...|        ...+|-.++.    .-++++++.++..=+..|+-||
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence            444455555666666666778888888877665222        2333433333    3467789988888888999999


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998          312 DVSYLAALCACNHAGLVDDGVRLFNSMAN  340 (582)
Q Consensus       312 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  340 (582)
                      ..|+..+++.+.+.+++.+|.++.-.|..
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            99999999999999999999888877776

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.76  E-value=2.4  Score=26.48  Aligned_cols=27  Identities=22%  Similarity=0.116  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998          381 LWQTLLGACQLYGDVEMAEIASRKLVE  407 (582)
Q Consensus       381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~  407 (582)
                      +++.|...|...|++++|+.+++++++
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            455555555666666666666655554

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.35  E-value=33  Score=31.41  Aligned_cols=52  Identities=10%  Similarity=-0.033  Sum_probs=29.9

Q ss_pred             CCHHHHHHHHHhC-----CCCCCHHHHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          361 GRLQEACDIVKSV-----SMGTDMVLWQTLL---GACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       361 g~~~~A~~~~~~~-----~~~p~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      .++++|+..|+..     +.+.+...-..++   ..-...+++.+|+.+|+++.....++
T Consensus       128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n  187 (288)
T KOG1586|consen  128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN  187 (288)
T ss_pred             HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4555666655544     1122222223333   23356788999999999988765544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.28  E-value=16  Score=38.09  Aligned_cols=165  Identities=12%  Similarity=0.040  Sum_probs=94.5

Q ss_pred             CChhHHHHHHHH-----HHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHH
Q 007998           71 PSTNDFNAVLRG-----LAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALL  145 (582)
Q Consensus        71 ~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~  145 (582)
                      -++.+|..++..     ..-.|+++.|-.++....       ...-+.+...+.++|..++|+++       ..+||.. 
T Consensus       579 ~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~-------s~D~d~r-  643 (794)
T KOG0276|consen  579 LNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL-------STDPDQR-  643 (794)
T ss_pred             cceEeEeeehHHHHHHHHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc-------CCChhhh-
Confidence            355555444332     233466666665544332       22334445555555555555442       2223221 


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC
Q 007998          146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA  225 (582)
Q Consensus       146 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~  225 (582)
                          -....+.|+++.|.++..+.  .+..-|..|..+..+.|++..|.+.|.+...          |..++-.+...|+
T Consensus       644 ----Felal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~  707 (794)
T KOG0276|consen  644 ----FELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGN  707 (794)
T ss_pred             ----hhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCC
Confidence                12344667777777765443  3556788888888888888888877766543          3455666666677


Q ss_pred             cHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc
Q 007998          226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK  272 (582)
Q Consensus       226 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~  272 (582)
                      .+....+-....+.|.. |     .-..+|...|+++++.+++.+-.
T Consensus       708 ~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~~lLi~t~  748 (794)
T KOG0276|consen  708 AEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECLELLISTQ  748 (794)
T ss_pred             hhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence            66655555555665532 2     22345667888888888887654

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=84.24  E-value=39  Score=36.60  Aligned_cols=68  Identities=12%  Similarity=-0.079  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh-------HHHHHHHHHHHHcCCCCch
Q 007998           74 NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL-------FETLQIHSHVLRHGFLADA  143 (582)
Q Consensus        74 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~  143 (582)
                      ..| ++|-.|.|.|++++|.++....... .......|...+..+....+-       +....-+.+..+...+.|+
T Consensus       113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp  187 (613)
T PF04097_consen  113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP  187 (613)
T ss_dssp             EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred             ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence            355 7888899999999999999665543 455566788888888765332       2444555555554433344

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=84.19  E-value=1.8  Score=26.04  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=11.6

Q ss_pred             chhHHHHHHHHHHhcCCHHHHH
Q 007998          244 NVVVCNAVIDMYAKCGLLDKAF  265 (582)
Q Consensus       244 ~~~~~~~li~~y~~~g~~~~A~  265 (582)
                      +...|+.|...|...|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            4455555555555555555543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=83.94  E-value=2.5  Score=40.46  Aligned_cols=109  Identities=10%  Similarity=0.065  Sum_probs=74.6

Q ss_pred             HHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChH
Q 007998          320 CACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVE  396 (582)
Q Consensus       320 ~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~  396 (582)
                      +-|.++|.+++|+..|.....  +.| +..++..-..+|.+..++..|+.-.... .+. .-...|.--..+-...|+..
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            458889999999999988776  335 7777777778899999988887655543 211 11234444445555678899


Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHH
Q 007998          397 MAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR  434 (582)
Q Consensus       397 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  434 (582)
                      +|.+-++.+++++|.+.    -|-..|.+.....++.-
T Consensus       183 EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I  216 (536)
T KOG4648|consen  183 EAKKDCETVLALEPKNI----ELKKSLARINSLRERKI  216 (536)
T ss_pred             HHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhH
Confidence            99999999999999753    34444555554444433

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.85  E-value=40  Score=31.96  Aligned_cols=59  Identities=10%  Similarity=-0.108  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       382 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      ++.....|...|.+.+|.++.++++.++|-+...+-.|.+.++..|+--.|.+-++++.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            34445788999999999999999999999999999999999999999888888887775

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=83.73  E-value=2.3  Score=24.88  Aligned_cols=27  Identities=19%  Similarity=0.129  Sum_probs=15.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998          385 LLGACQLYGDVEMAEIASRKLVEMGSN  411 (582)
Q Consensus       385 ll~~~~~~g~~~~a~~~~~~~~~~~p~  411 (582)
                      +..++...|++++|.+.|+++++..|+
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            344555566666666666666666553

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=83.52  E-value=71  Score=34.63  Aligned_cols=209  Identities=16%  Similarity=0.103  Sum_probs=86.2

Q ss_pred             HHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCc-------hHHHHHHHHHHhCCCCCChh--HHHHH
Q 007998           48 EFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKP-------TNAVLWYRQMLRGSHRSDAL--TCSFA  114 (582)
Q Consensus        48 ~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p~~~--~~~~l  114 (582)
                      ++|=.+.| |.+++|.++.....   .+....+-..+..|..+.+-       ++...-|++..+.....|++  ..-.+
T Consensus       116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i  195 (613)
T PF04097_consen  116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI  195 (613)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence            67777778 99999999993322   33445677888888775332       35566677776654433554  22223


Q ss_pred             HHHHHhcCC--------hHHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH
Q 007998          115 LKACARVLA--------LFETLQIHSHVLRHGFL-----ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALI  181 (582)
Q Consensus       115 l~~~~~~~~--------~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li  181 (582)
                      |..|-....        ++.=+.+.=.+++....     .+..++..|-+...+-|     .+.|..  ..+...|   .
T Consensus       196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~Y---f  265 (613)
T PF04097_consen  196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLLY---F  265 (613)
T ss_dssp             HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------H---H
T ss_pred             HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHHH---H
Confidence            332322111        11111111111111110     11223322222221111     122222  1122222   3


Q ss_pred             HHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHh---
Q 007998          182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER-LDMNVVVCNAVIDMYAK---  257 (582)
Q Consensus       182 ~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~---  257 (582)
                      ..+.-.|+++.|++.+.+  ..+. +.|.+.+...+.-+.-.+-.+...   ..+.... -.|..--+..||..|.+   
T Consensus       266 ~~LlLtgqFE~AI~~L~~--~~~~-~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~  339 (613)
T PF04097_consen  266 QVLLLTGQFEAAIEFLYR--NEFN-RVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE  339 (613)
T ss_dssp             HHHHHTT-HHHHHHHHHT----T--HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred             HHHHHHhhHHHHHHHHHh--hccC-cccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence            344567888888888776  2233 566666666666554333222211   2222111 01111445667777776   


Q ss_pred             cCCHHHHHHHHhccc
Q 007998          258 CGLLDKAFEVFDNIK  272 (582)
Q Consensus       258 ~g~~~~A~~~~~~~~  272 (582)
                      ..+..+|.+.|--+.
T Consensus       340 ~td~~~Al~Y~~li~  354 (613)
T PF04097_consen  340 ITDPREALQYLYLIC  354 (613)
T ss_dssp             TT-HHHHHHHHHGGG
T ss_pred             ccCHHHHHHHHHHHH
Confidence            346777777776665

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.45  E-value=11  Score=33.74  Aligned_cols=72  Identities=14%  Similarity=0.003  Sum_probs=36.1

Q ss_pred             hHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCchHHHHHHHHHHHhcCCHHHH
Q 007998           90 TNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG---FLADALLGTTLLDVYAKVGEIVSA  162 (582)
Q Consensus        90 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~y~~~g~~~~A  162 (582)
                      ++|...|-.+...+.--++.....+.. |-...+.+++++++-.+++..   -.+|+.++.+|++.|.+.|+.+.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            355555555555443323333333333 333455666666665555421   234555666666666666665555

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.25  E-value=52  Score=35.16  Aligned_cols=51  Identities=20%  Similarity=0.182  Sum_probs=27.7

Q ss_pred             CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHHhCCCc
Q 007998          393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY-ERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~~~~  445 (582)
                      .+.+.|...++++-+.++  +.+...+...+.-. ++++.+.-.+..+.+.+..
T Consensus       378 r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~  429 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE  429 (552)
T ss_pred             CCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence            356667777777766662  22233333333211 6666666666666665554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=82.61  E-value=4  Score=27.59  Aligned_cols=33  Identities=21%  Similarity=0.115  Sum_probs=26.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998          384 TLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF  416 (582)
Q Consensus       384 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  416 (582)
                      .+.-++.+.|+++.|.+..+.+++.+|+|..+-
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            455688999999999999999999999886543

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=82.39  E-value=1.4e+02  Score=37.12  Aligned_cols=355  Identities=8%  Similarity=-0.035  Sum_probs=162.5

Q ss_pred             HHhcCCC-CCHHHHHHHHhc----CCCCCh--hHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 007998           49 FYALSPL-NELAYAHALFRQ----INAPST--NDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV  121 (582)
Q Consensus        49 li~~y~~-g~~~~A~~~f~~----~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  121 (582)
                      |..+--+ +.+..|.-.|++    ..+.+.  .-|-.+...|+.-++++....+...-.     .+...+ .-|-.....
T Consensus      1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEHEAS 1462 (2382)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHHHhh
Confidence            3334344 777777777777    222221  223444457888888877766665311     122222 233344566


Q ss_pred             CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHH-HHHHHhCCChhHHHHHH
Q 007998          122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR---DIASWNAL-IAGLAQGNLASEAVDLF  197 (582)
Q Consensus       122 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~l-i~~~~~~g~~~~A~~~~  197 (582)
                      |++..|...|+.+.+.+. +....++.++..-...|.+..+....+.....   ....|+++ +.+-.+.++++......
T Consensus      1463 g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred             ccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence            788888888888876642 22445555555444556666666655555322   22333333 23335666666655554


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHhcc--CCcHHHHHHHHHHH--------HcCCC-CchhHHHHHHHHHHhcCCHHHHHH
Q 007998          198 KRMKMEGVFKPNEVTVLGALAACGHL--GAWKEGDKIHEYIR--------EERLD-MNVVVCNAVIDMYAKCGLLDKAFE  266 (582)
Q Consensus       198 ~~m~~~g~~~pd~~t~~~ll~a~~~~--~~~~~a~~~~~~~~--------~~~~~-~~~~~~~~li~~y~~~g~~~~A~~  266 (582)
                      .   ..+  ..+-.+. .+.....+.  .+.-.-....+.+.        ..+.. .-...|..++....-+.--.. .+
T Consensus      1542 ~---~~n--~e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~-~~ 1614 (2382)
T KOG0890|consen 1542 S---DRN--IEYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS-IE 1614 (2382)
T ss_pred             h---ccc--ccchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH-HH
Confidence            4   111  0111111 011111111  11100001111111        11111 112344444444433322222 22


Q ss_pred             HHhccc----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH-hcCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHH
Q 007998          267 VFDNIK----CRKSLVTWNTMVMAFAVHGDGPRALELFEQMG-RAGVKPD-----DVSYLAALCACNHAGLVDDGVRLFN  336 (582)
Q Consensus       267 ~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~  336 (582)
                      ......    ..-+..-|-.-+.--....+..+-+--+++.. .....|+     ..+|....+.+...|.++.|....-
T Consensus      1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred             HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            222221    01111223332221111111222222232221 1112222     2467777777888899988888777


Q ss_pred             HHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-----C-----CCCCHHHHHHHHHH--------H-Hhc--CCh
Q 007998          337 SMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-----S-----MGTDMVLWQTLLGA--------C-QLY--GDV  395 (582)
Q Consensus       337 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~-----~~p~~~~~~~ll~~--------~-~~~--g~~  395 (582)
                      ...+.+ .|.  .+--....+-..|+-..|+.++++.     +     .++.+..-+.++..        | ...  -..
T Consensus      1695 ~A~e~r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s 1771 (2382)
T KOG0890|consen 1695 NAKESR-LPE--IVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES 1771 (2382)
T ss_pred             hhhhcc-cch--HHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH
Confidence            666643 333  3445567777888888888887654     1     11112222222211        1 122  234


Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHH
Q 007998          396 EMAEIASRKLVEMGSNNCGDFVLLS  420 (582)
Q Consensus       396 ~~a~~~~~~~~~~~p~~~~~~~~l~  420 (582)
                      +..++.|.++.+..|.....|..++
T Consensus      1772 ~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1772 KDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred             HHHHHHHHHHHHHcccccCceeeHH
Confidence            5566777777777775544444444

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=81.66  E-value=10  Score=29.20  Aligned_cols=50  Identities=10%  Similarity=0.111  Sum_probs=36.3

Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998          370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL  419 (582)
Q Consensus       370 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  419 (582)
                      +-.+..-|++.+..+.+.+|++.+++..|.++++-+...-..+...|-.+
T Consensus        33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~   82 (103)
T cd00923          33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI   82 (103)
T ss_pred             HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence            33446678889999999999999999999999998775443333344433

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.93  E-value=1.9  Score=36.50  Aligned_cols=49  Identities=4%  Similarity=-0.052  Sum_probs=21.8

Q ss_pred             HHhcCCC-CCHHHHHHHHhcCC----CCChhHHHHHHHHHHcCCCchHHHHHHH
Q 007998           49 FYALSPL-NELAYAHALFRQIN----APSTNDFNAVLRGLAHSSKPTNAVLWYR   97 (582)
Q Consensus        49 li~~y~~-g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~   97 (582)
                      +|+.|.+ +.++...+.++.+.    ..+....+.++..|++.+..+...++++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            3444444 44444443333332    2234445555555555555455555444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.92  E-value=2.2  Score=23.81  Aligned_cols=24  Identities=17%  Similarity=0.105  Sum_probs=16.8

Q ss_pred             hhHHHHHHHHHhcCCchHHHHHHH
Q 007998          414 GDFVLLSNLYAAYERWDDVGRVRK  437 (582)
Q Consensus       414 ~~~~~l~~~~~~~g~~~~a~~~~~  437 (582)
                      .....++.++...|++++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345667777777777777777654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.73  E-value=41  Score=29.92  Aligned_cols=90  Identities=11%  Similarity=0.032  Sum_probs=60.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhHcCCccChhhHH-----hhhhHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 007998          319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYG-----SVVDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQLY  392 (582)
Q Consensus       319 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~  392 (582)
                      ...+...+++++|...++.....   |....+.     .|.......|.+++|+..++...-+. ....-..-.+.+...
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k  172 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK  172 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence            44567788888888888877752   2222222     34566778899999999998764211 111122233677888


Q ss_pred             CChHHHHHHHHHHHHcCCC
Q 007998          393 GDVEMAEIASRKLVEMGSN  411 (582)
Q Consensus       393 g~~~~a~~~~~~~~~~~p~  411 (582)
                      |+-++|...|++.++.++.
T Consensus       173 g~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         173 GDKQEARAAYEKALESDAS  191 (207)
T ss_pred             CchHHHHHHHHHHHHccCC
Confidence            9999999999999888753

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=80.67  E-value=12  Score=29.16  Aligned_cols=50  Identities=12%  Similarity=0.137  Sum_probs=33.6

Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998          370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL  419 (582)
Q Consensus       370 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  419 (582)
                      +-.+..-|++.+..+.+.+|++.+++..|.++++-+...-.+....|-.+
T Consensus        36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~   85 (108)
T PF02284_consen   36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI   85 (108)
T ss_dssp             HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred             HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence            33445678999999999999999999999999998877654333355444

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=80.16  E-value=4.3  Score=25.30  Aligned_cols=27  Identities=30%  Similarity=0.378  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998          278 VTWNTMVMAFAVHGDGPRALELFEQMG  304 (582)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~  304 (582)
                      .+++.|...|...|++++|+.++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            345666666666666666666666554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.04  E-value=95  Score=33.75  Aligned_cols=151  Identities=14%  Similarity=0.122  Sum_probs=81.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCC---chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHH
Q 007998          117 ACARVLALFETLQIHSHVLRHGFLA---DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEA  193 (582)
Q Consensus       117 ~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A  193 (582)
                      .+.+.+.+++|..+.....  |..|   -..++...|+.+.-.|++++|-...-.|-..+..-|.-.+.-+...++....
T Consensus       365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I  442 (846)
T KOG2066|consen  365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI  442 (846)
T ss_pred             HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence            3444455566655443322  2222   2345667777777777777777777777666666676666666666655443


Q ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc-------------------CCCCchhHHHHHHHH
Q 007998          194 VDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE-------------------RLDMNVVVCNAVIDM  254 (582)
Q Consensus       194 ~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~li~~  254 (582)
                      ..+   +. .|..+.++..|..++..+.. .+.   ..+++.+.+.                   ...-+...-..|+..
T Consensus       443 a~~---lP-t~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L  514 (846)
T KOG2066|consen  443 APY---LP-TGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL  514 (846)
T ss_pred             hcc---CC-CCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence            222   11 11101234445555544443 111   1111111110                   001123344558899


Q ss_pred             HHhcCCHHHHHHHHhcccCCCCHH
Q 007998          255 YAKCGLLDKAFEVFDNIKCRKSLV  278 (582)
Q Consensus       255 y~~~g~~~~A~~~~~~~~~~~~~~  278 (582)
                      |...+++.+|.+.+-... .+++.
T Consensus       515 Yl~d~~Y~~Al~~ylklk-~~~vf  537 (846)
T KOG2066|consen  515 YLYDNKYEKALPIYLKLQ-DKDVF  537 (846)
T ss_pred             HHHccChHHHHHHHHhcc-ChHHH
Confidence            999999999999998887 55543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	582
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 76.4 bits (186), Expect = 1e-14
 Identities = 28/176 (15%), Positives = 55/176 (31%), Gaps = 7/176 (3%)

Query: 207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFE 266
            P E  +   L       +            + +L        A          L  A  
Sbjct: 89  SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148

Query: 267 VFDNIKCRK------SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC 320
           +      ++      +L  +N +++ +A  G     + +   +  AG+ PD +SY AAL 
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208

Query: 321 ACNHAGLVDDGV-RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSM 375
                      + R    M+  G+K        ++    RA  L+    +  + S+
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 45.2 bits (105), Expect = 6e-05
 Identities = 28/228 (12%), Positives = 62/228 (27%), Gaps = 9/228 (3%)

Query: 9   QKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPLNELAYAHALFRQI 68
           +    +     + +++L+A L    Q        R   +E   LS            +  
Sbjct: 28  KILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAP 87

Query: 69  NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV----LAL 124
            +P       +L+                Q  +              K C       LA 
Sbjct: 88  ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLA- 146

Query: 125 FETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---GVR-DIASWNAL 180
              L +H    +   L    +   ++  +A+ G       V   +   G+  D+ S+ A 
Sbjct: 147 HHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206

Query: 181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE 228
           +  + + +  +  ++       +   K   +     L+        K 
Sbjct: 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 1e-10
 Identities = 72/501 (14%), Positives = 151/501 (30%), Gaps = 128/501 (25%)

Query: 123 ALFETLQIHSHVLRHGFLADALLG---TTLLDVYAKVGEIVSAKKVFDEM--GVRDIASW 177
           AL E L+   +VL  G     +LG   T +        ++  + KV  +M   +     W
Sbjct: 143 ALLE-LRPAKNVLIDG-----VLGSGKTWV------ALDVCLSYKVQCKMDFKI----FW 186

Query: 178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR 237
                 L   N  S    L    K+     PN  +     +         +  ++   ++
Sbjct: 187 ------LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLK 239

Query: 238 EERLDMNVVVCNAVIDMYAKCGL-LD-----KAFEVFDNIKCRKSLVTWNTMVMAFAV-- 289
            +               Y  C L L      KA+  F+ + C+  L T    V  F    
Sbjct: 240 SKP--------------YENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAA 284

Query: 290 ---------HGDG---PRALELFEQMGRAGVKPDDVSYLAALCACN--HAGLVDDGVRLF 335
                    H           L  +      +P D+         N     ++ + +R  
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKY--LDCRPQDLPREV--LTTNPRRLSIIAESIRDG 340

Query: 336 NSMANCGVKPNMKHYG---------SVVDLLGRAG--RLQEACDI----VKSVSMGTDMV 380
            +  +     N KH           S +++L  A   ++ +   +       +      +
Sbjct: 341 LATWD-----NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSL 394

Query: 381 LWQTLLGACQLYGDVE--MAEIASRKLVEMGSNNCGDFVL----------LSNLYAAYER 428
           +W  ++       DV   + ++    LVE          +          L N YA +  
Sbjct: 395 IWFDVI-----KSDVMVVVNKLHKYSLVEKQPKE-STISIPSIYLELKVKLENEYALHRS 448

Query: 429 WDDVGRVRKAMKNRDVKKVPGFSYI--EVGGVIHKFFTSDKSHVKW---REIYEKLDEIM 483
             D   + K   + D+       Y    +G   H     +    +    R ++     + 
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKNIEHPE-RMTLFRMVFLDFRFLE 504

Query: 484 FKIKEYGYA-AGTSCVLHDIGEEEK-ENALCYHSEKLAVAFGLISTSEATSIQVFKNLRI 541
            KI+    A   +  +L+ + + +  +  +C +  K      L++       ++ +NL  
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---RLVNAILDFLPKIEENLIC 561

Query: 542 CRDCHDVIKLI-----SKVYN 557
            +   D++++        ++ 
Sbjct: 562 SKYT-DLLRIALMAEDEAIFE 581

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	582
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.83
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.81
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.8
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.8
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.79
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.78
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.75
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.72
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.72
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.72
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.7
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.7
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.66
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.62
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.6
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.6
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.57
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.56
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.55
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.54
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.54
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.54
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.53
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.53
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.52
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.51
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.51
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.51
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.5
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.49
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.49
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.47
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.44
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.44
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.43
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.41
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.4
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.4
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.39
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.36
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.36
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.36
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.34
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.33
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.32
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.31
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.29
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.28
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.28
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.28
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.25
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.24
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.21
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.21
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.11
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.08
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.03
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.02
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.01
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.98
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.97
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.97
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.97
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.96
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.92
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.91
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.85
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.85
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.83
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.83
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.82
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.82
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.79
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.79
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.78
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.78
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.78
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.74
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.73
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.73
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.73
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.7
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.7
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.69
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.68
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.68
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.67
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.66
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.64
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.63
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.62
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.6
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.58
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.57
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.56
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.55
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.55
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.53
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.53
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.49
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.47
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.46
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.46
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.46
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.44
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.43
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.43
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.42
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.41
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.39
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.39
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.39
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.38
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.37
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.37
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.34
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.34
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.34
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.33
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.33
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.33
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.31
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.31
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.3
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.3
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.28
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.27
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.26
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.24
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.19
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.18
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.16
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.16
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.14
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.13
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.12
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.11
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.1
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.1
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.07
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.05
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.05
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.04
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.03
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.02
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.01
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.0
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.97
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.96
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.95
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.94
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.91
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.85
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.82
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.8
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.79
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.76
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.69
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.68
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.58
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.58
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.49
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.48
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.48
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.39
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.37
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.24
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.21
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.2
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.99
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.95
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.93
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.89
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.83
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.83
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.79
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.75
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.66
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.56
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.55
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.45
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.15
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.99
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.94
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.93
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.89
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.87
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.04
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.73
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.39
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.25
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.06
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.06
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.82
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.7
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.63
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.43
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.82
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.42
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	89.99
2p58_C	116	Putative type III secretion protein YSCG; type III	89.87
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	89.42
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	88.86
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.43
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.02
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	86.5
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	86.07
2p58_C	116	Putative type III secretion protein YSCG; type III	85.68
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.64
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.89
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	83.59
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	83.28
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	82.72
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	82.4
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	82.33
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	81.62
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	80.81

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.3e-38  Score=338.20  Aligned_cols=426  Identities=10%  Similarity=-0.041  Sum_probs=374.9

Q ss_pred             chHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcC--CCCChhHHHHH
Q 007998            3 NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQI--NAPSTNDFNAV   79 (582)
Q Consensus         3 ~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~--~~~~~~~~~~l   79 (582)
                      .|..++.+|...  ++.+.|..++..+++.  .++  +..   ++.++..|.+ |++++|..+|+.+  .+++..+|+.+
T Consensus        86 ~~~~~~~~~~~~--g~~~~A~~~~~~~~~~--~p~--~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l  156 (597)
T 2xpi_A           86 YLRLWRHDALMQ--QQYKCAAFVGEKVLDI--TGN--PND---AFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLA  156 (597)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHH--HCC--HHH---HHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHH
T ss_pred             HHHHHHHHHHHc--cCchHHHHHHHHHHhh--CCC--chH---HHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHH
Confidence            356788888874  4699999999999854  345  544   3789999999 9999999999998  46899999999


Q ss_pred             HHHHHcCCCchHHHHHHHHHHhC---------------CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchH
Q 007998           80 LRGLAHSSKPTNAVLWYRQMLRG---------------SHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADAL  144 (582)
Q Consensus        80 i~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~  144 (582)
                      +..|.+.|++++|+++|+++...               +.+++..+|+.++.++.+.|++++|.++|+.+++.++. +..
T Consensus       157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~  235 (597)
T 2xpi_A          157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYE  235 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred             HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhH
Confidence            99999999999999999954221               22345789999999999999999999999999987633 333


Q ss_pred             HH--------------------------------------HHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHH
Q 007998          145 LG--------------------------------------TTLLDVYAKVGEIVSAKKVFDEMGV--RDIASWNALIAGL  184 (582)
Q Consensus       145 ~~--------------------------------------~~li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~  184 (582)
                      .+                                      +.++.+|.+.|++++|.++|+++..  ++..+|+.++.+|
T Consensus       236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  315 (597)
T 2xpi_A          236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL  315 (597)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence            32                                      3336677789999999999999987  7999999999999


Q ss_pred             HhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 007998          185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA  264 (582)
Q Consensus       185 ~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A  264 (582)
                      .+.|++++|+++|+++.+.+  +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.++|++++|
T Consensus       316 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A  392 (597)
T 2xpi_A          316 FVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA  392 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999876  5688899999999999999999999999999764 45789999999999999999999


Q ss_pred             HHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcC
Q 007998          265 FEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG  342 (582)
Q Consensus       265 ~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~  342 (582)
                      .++|+++.  .+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+.|++++|.++|+++.+..
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  471 (597)
T 2xpi_A          393 RRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF  471 (597)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999874  25678899999999999999999999999998753 4477899999999999999999999999999843


Q ss_pred             CccChhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998          343 VKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGTD--MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC  413 (582)
Q Consensus       343 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  413 (582)
                       +.+..+|..++.+|.+.|++++|.++|+++       +..|+  ..+|..++.+|.+.|++++|.+.++++++.+|+++
T Consensus       472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  550 (597)
T 2xpi_A          472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA  550 (597)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred             -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence             346789999999999999999999999887       45777  78999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       414 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      .+|..++.+|.+.|++++|.+.++++.+..
T Consensus       551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~  580 (597)
T 2xpi_A          551 NVHTAIALVYLHKKIPGLAITHLHESLAIS  580 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999998754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-37  Score=328.33  Aligned_cols=416  Identities=7%  Similarity=-0.058  Sum_probs=340.2

Q ss_pred             hcCCC-CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHH
Q 007998           51 ALSPL-NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQ  129 (582)
Q Consensus        51 ~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  129 (582)
                      ..+.+ |.+..++..|+.++.+++..|+.++..|.+.|++++|+.+|++|..  ..|+..++..++.+|...|++++|.+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~  138 (597)
T 2xpi_A           61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC  138 (597)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence            44556 8888999999999989999999999999999999999999999985  56788999999999999999999999


Q ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-------------------ChhHHHHHHHHHHhCCCh
Q 007998          130 IHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-------------------DIASWNALIAGLAQGNLA  190 (582)
Q Consensus       130 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-------------------~~~~~~~li~~~~~~g~~  190 (582)
                      +++.+...  +++..+++.++.+|.++|++++|.++|+++...                   +..+|+.++.+|.+.|++
T Consensus       139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  216 (597)
T 2xpi_A          139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF  216 (597)
T ss_dssp             HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence            99988654  678899999999999999999999999965433                   488999999999999999


Q ss_pred             hHHHHHHHHHHHcCCCCCCHHHHHHH--------------------------------------HHHHhccCCcHHHHHH
Q 007998          191 SEAVDLFKRMKMEGVFKPNEVTVLGA--------------------------------------LAACGHLGAWKEGDKI  232 (582)
Q Consensus       191 ~~A~~~~~~m~~~g~~~pd~~t~~~l--------------------------------------l~a~~~~~~~~~a~~~  232 (582)
                      ++|+++|++|.+.+  +.+...+..+                                      +..|.+.|++++|.++
T Consensus       217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~  294 (597)
T 2xpi_A          217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY  294 (597)
T ss_dssp             HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence            99999999999875  3344443333                                      4556678899999999


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 007998          233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP  310 (582)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  310 (582)
                      |+++.+.  +++..+++.++.+|.+.|++++|.++|+++.  .+.+..+|+.++.+|.+.|++++|..+|+++.+. .+.
T Consensus       295 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~  371 (597)
T 2xpi_A          295 LSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPE  371 (597)
T ss_dssp             HHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTT
T ss_pred             HHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-Ccc
Confidence            9998876  5789999999999999999999999999885  3557889999999999999999999999999865 345


Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 007998          311 DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGA  388 (582)
Q Consensus       311 ~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~  388 (582)
                      +..++..+...|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++ ... ++..+|..++.+
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  450 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ  450 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            67899999999999999999999999998832 346789999999999999999999999987 333 478999999999


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC----CCccCC-cccEEEECCEEEEEE
Q 007998          389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR----DVKKVP-GFSYIEVGGVIHKFF  463 (582)
Q Consensus       389 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~~-~~s~~~~~~~~~~~~  463 (582)
                      |.+.|++++|.+.|+++++..|.++.+|..++.+|.+.|++++|.++++++.+.    +..+.. ...|.       .+.
T Consensus       451 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~-------~l~  523 (597)
T 2xpi_A          451 HMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA-------NLG  523 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH-------HHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH-------HHH
Confidence            999999999999999999999999999999999999999999999999999765    333321 12222       112


Q ss_pred             eCCCCCcchHHHHHHHHHHH
Q 007998          464 TSDKSHVKWREIYEKLDEIM  483 (582)
Q Consensus       464 ~~~~~~~~~~~~~~~l~~l~  483 (582)
                      ..+..+++.+++...++++.
T Consensus       524 ~~~~~~g~~~~A~~~~~~~~  543 (597)
T 2xpi_A          524 HAYRKLKMYDAAIDALNQGL  543 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHH
Confidence            23455677888887666543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=8.6e-27  Score=236.16  Aligned_cols=370  Identities=11%  Similarity=0.012  Sum_probs=312.3

Q ss_pred             hcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH
Q 007998           51 ALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE  126 (582)
Q Consensus        51 ~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  126 (582)
                      ..+.+ |++++|.+.|+.+.   +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+..++...|++++
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence            33445 99999999888763   3466677788888899999999999999888753 3467789999999999999999


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC--CC-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 007998          127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG--VR-DIASWNALIAGLAQGNLASEAVDLFKRMKME  203 (582)
Q Consensus       127 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  203 (582)
                      |.+.++.+++.. +.+...+..+..+|.+.|++++|.+.|+++.  .| +...+..+...+...|++++|++.|+++.+.
T Consensus        86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  164 (388)
T 1w3b_A           86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            999999998875 3356678899999999999999999998874  23 5567888889999999999999999999887


Q ss_pred             CCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHH
Q 007998          204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWN  281 (582)
Q Consensus       204 g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~  281 (582)
                      .  +.+..++..+...+...|++++|...++++++... .+...+..+...|...|++++|...|++..  .+.+..+|.
T Consensus       165 ~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  241 (388)
T 1w3b_A          165 Q--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG  241 (388)
T ss_dssp             C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence            5  56788899999999999999999999999998753 367788889999999999999999998654  245678899


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc
Q 007998          282 TMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA  360 (582)
Q Consensus       282 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  360 (582)
                      .+...|...|++++|+..|+++.+.  .| +..++..+..++.+.|++++|...|+++.+.. +.+...+..+...|.+.
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence            9999999999999999999999875  34 45688888999999999999999999998842 45678888999999999


Q ss_pred             CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998          361 GRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER  428 (582)
Q Consensus       361 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  428 (582)
                      |++++|.+.++++ ...| +..+|..+...+.+.|++++|...++++++.+|+++.+|..++.++...|+
T Consensus       319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            9999999999886 4445 578899999999999999999999999999999999999999988877663

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=6.9e-29  Score=256.93  Aligned_cols=178  Identities=15%  Similarity=0.142  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCC---------hhHHHHHHHHHHHcCCCCCCHH
Q 007998          145 LGTTLLDVYAKVGEIVSAKKVFDEMG----VRDIASWNALIAGLAQGNL---------ASEAVDLFKRMKMEGVFKPNEV  211 (582)
Q Consensus       145 ~~~~li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~~pd~~  211 (582)
                      +++.+|++|++.|++++|.++|++|.    .||..+||+||.+|++.+.         .++|.++|++|...|+ .||..
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~-~Pd~~  106 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV-VPNEA  106 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-CCCHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-CCCHH
Confidence            34445555555555555555555553    3455555555555544333         3445555555555554 55555


Q ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc---CCCCHHHHHHHHHHHH
Q 007998          212 TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK---CRKSLVTWNTMVMAFA  288 (582)
Q Consensus       212 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~  288 (582)
                      ||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.   ..||..+|++||.+|+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            5555555555555555555555555555555555555555555555555555555555443   3445555555555555


Q ss_pred             hCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007998          289 VHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN  323 (582)
Q Consensus       289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~  323 (582)
                      +.|+.++|.++|++|.+.|..|+..||+.++..|.
T Consensus       187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~  221 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK  221 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence            55555555555555555555555555555554444

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=4.4e-26  Score=230.94  Aligned_cols=355  Identities=14%  Similarity=0.049  Sum_probs=312.2

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcC
Q 007998           79 VLRGLAHSSKPTNAVLWYRQMLRGSHRSD-ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVG  157 (582)
Q Consensus        79 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g  157 (582)
                      +...+.+.|++++|++.++++.+.  .|+ ...+..+...+...|++++|...++.+++.. +.+...+..+...|.+.|
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g   81 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence            345677889999999999999875  344 4556666777889999999999999998875 557889999999999999


Q ss_pred             CHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHH
Q 007998          158 EIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE  234 (582)
Q Consensus       158 ~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~  234 (582)
                      ++++|...|+++.   ..+..+|..+...+.+.|++++|++.|.++.+..  +.+...+..+...+...|++++|.+.+.
T Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9999999999874   3356789999999999999999999999999875  5566778888899999999999999999


Q ss_pred             HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-C
Q 007998          235 YIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-D  311 (582)
Q Consensus       235 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~  311 (582)
                      ++++.. +.+...+..+...|.+.|++++|...|+++.  .+.+...|..+...+...|++++|+..|++....  .| +
T Consensus       160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~  236 (388)
T 1w3b_A          160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH  236 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence            999875 3367899999999999999999999999875  3556788999999999999999999999999875  45 4


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 007998          312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SM-GTDMVLWQTLLGAC  389 (582)
Q Consensus       312 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~  389 (582)
                      ..++..+..++...|++++|...|+++.+.+ +.+...|..+...|.+.|++++|.+.++++ .. +++..+|..+...+
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence            6788899999999999999999999999843 234678899999999999999999999987 22 34788999999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          390 QLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       390 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      ...|++++|...++++++..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus       316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999864

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=2.2e-28  Score=253.16  Aligned_cols=199  Identities=16%  Similarity=0.150  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC---------HH
Q 007998           91 NAVLWYRQMLRGSHRSDAL-TCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE---------IV  160 (582)
Q Consensus        91 ~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~~  160 (582)
                      .+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||++|++.+.         ++
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            4455666666666655443 5777788888888888888888888888888888888888888876654         78


Q ss_pred             HHHHHHhhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHH
Q 007998          161 SAKKVFDEMG----VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYI  236 (582)
Q Consensus       161 ~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~  236 (582)
                      .|.++|++|.    .||..+||+||.+|++.|++++|.++|++|.+.|+ .||..||+++|.+|++.|++++|.++|++|
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            8999999995    57999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             HHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc---CCCCHHHHHHHHHHHHhC
Q 007998          237 REERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVH  290 (582)
Q Consensus       237 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~  290 (582)
                      .+.|+.||..+|++||++|++.|++++|.++|++|.   ..|+..||+.++..|...
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999996   689999999999988754

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=4e-23  Score=217.01  Aligned_cols=391  Identities=8%  Similarity=-0.097  Sum_probs=310.8

Q ss_pred             HHHHhcCCC-CCHHHHHHHHhcCC--CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 007998           47 IEFYALSPL-NELAYAHALFRQIN--APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA  123 (582)
Q Consensus        47 ~~li~~y~~-g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  123 (582)
                      ..+...|.+ |++++|...|+++.  .||...|..+...+.+.|++++|+..|+++.+.++ .+..++..+..++...|+
T Consensus        10 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~   88 (514)
T 2gw1_A           10 KDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGK   88 (514)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhh
Confidence            455566667 99999999998875  47888999999999999999999999999987642 255688888899999999


Q ss_pred             hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHH-------------------------------------
Q 007998          124 LFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVF-------------------------------------  166 (582)
Q Consensus       124 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f-------------------------------------  166 (582)
                      +++|.+.++.+.+.+. ++......++..+.+......+.+.+                                     
T Consensus        89 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (514)
T 2gw1_A           89 FADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF  167 (514)
T ss_dssp             HHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence            9999999999988764 33344444444444332222222222                                     


Q ss_pred             -hhcC---------CC-ChhHHHHHHHHHHh---CCChhHHHHHHHHHHH-----cCCCC-------CCHHHHHHHHHHH
Q 007998          167 -DEMG---------VR-DIASWNALIAGLAQ---GNLASEAVDLFKRMKM-----EGVFK-------PNEVTVLGALAAC  220 (582)
Q Consensus       167 -~~m~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~~-------pd~~t~~~ll~a~  220 (582)
                       ....         .+ +...|......+..   .|++++|+..|+++.+     ....+       .+..++..+...+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (514)
T 2gw1_A          168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK  247 (514)
T ss_dssp             HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence             1110         01 24455555555554   8999999999999988     31102       2345778888899


Q ss_pred             hccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHH
Q 007998          221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALE  298 (582)
Q Consensus       221 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~  298 (582)
                      ...|++++|...++.+.+....  ...+..+...|.+.|++++|...|+++.  .+.+...|..+...|...|++++|+.
T Consensus       248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  325 (514)
T 2gw1_A          248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK  325 (514)
T ss_dssp             HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            9999999999999999988644  8889999999999999999999999765  24567889999999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC----C
Q 007998          299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV----S  374 (582)
Q Consensus       299 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~  374 (582)
                      .|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.++++    +
T Consensus       326 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  403 (514)
T 2gw1_A          326 DFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN  403 (514)
T ss_dssp             HHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            999998853 2345688888999999999999999999999842 335678888999999999999999999876    3


Q ss_pred             CCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          375 MGTD----MVLWQTLLGACQL---YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       375 ~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ..++    ...|..+...+..   .|++++|...++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus       404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            2233    4588999999999   9999999999999999999999999999999999999999999999988754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=1.5e-22  Score=209.02  Aligned_cols=295  Identities=8%  Similarity=0.004  Sum_probs=174.3

Q ss_pred             CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 007998           71 PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL  150 (582)
Q Consensus        71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  150 (582)
                      .++..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|.+.++.+++.+ +.+..++..+.
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  101 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG  101 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            356678888888888888888888888887653 2356677778888888888888888888888775 33566777788


Q ss_pred             HHHHhcCCHHHHHHHHhhcCCC---Ch---hHHHHHHHH------------HHhCCChhHHHHHHHHHHHcCCCCCCHHH
Q 007998          151 DVYAKVGEIVSAKKVFDEMGVR---DI---ASWNALIAG------------LAQGNLASEAVDLFKRMKMEGVFKPNEVT  212 (582)
Q Consensus       151 ~~y~~~g~~~~A~~~f~~m~~~---~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~~pd~~t  212 (582)
                      .+|.+.|++++|.+.|+++...   +.   ..|..++..            +.+.|++++|+..|+++.+..  +.+..+
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~  179 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAEL  179 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH
Confidence            8888888888888888776432   23   455555333            666666666666666666554  445556


Q ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHH-------
Q 007998          213 VLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTM-------  283 (582)
Q Consensus       213 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~l-------  283 (582)
                      +..+..++...|++++|..+++++.+.. +.+..++..+..+|.+.|++++|...|+++.  .+.+...+..+       
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  258 (450)
T 2y4t_A          180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN  258 (450)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            6666666666666666666666665543 2245555566666666666666666665543  12233333333       


Q ss_pred             -----HHHHHhCCChhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhh
Q 007998          284 -----VMAFAVHGDGPRALELFEQMGRAGVKPD-----DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV  353 (582)
Q Consensus       284 -----i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  353 (582)
                           +..+...|++++|+..|+++.+.  .|+     ...+..+..++.+.|++++|...++++.+.. +.+...|..+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l  335 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence                 44444455555555555554442  222     1234444444444455555555444444321 1233444444


Q ss_pred             hhHHhhcCCHHHHHHHHHhC
Q 007998          354 VDLLGRAGRLQEACDIVKSV  373 (582)
Q Consensus       354 i~~~~~~g~~~~A~~~~~~~  373 (582)
                      ..+|...|++++|.+.++++
T Consensus       336 ~~~~~~~~~~~~A~~~~~~a  355 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETA  355 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHH
Confidence            44444444444444444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=2e-22  Score=208.14  Aligned_cols=339  Identities=12%  Similarity=0.032  Sum_probs=276.2

Q ss_pred             HHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 007998           91 NAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG  170 (582)
Q Consensus        91 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~  170 (582)
                      .+...|....... +.+...+..+...+...|++++|..+++.+++.. +.+..++..+..+|.+.|++++|...|+++.
T Consensus        10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A           10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3444444444432 2356678888999999999999999999999875 4578899999999999999999999999874


Q ss_pred             ---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCH---HHHHHH------------HHHHhccCCcHHHHHH
Q 007998          171 ---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE---VTVLGA------------LAACGHLGAWKEGDKI  232 (582)
Q Consensus       171 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~---~t~~~l------------l~a~~~~~~~~~a~~~  232 (582)
                         ..+..+|..+...|.+.|++++|++.|+++.+..  +.+.   ..+..+            ...+...|++++|...
T Consensus        88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~  165 (450)
T 2y4t_A           88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF  165 (450)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence               3467899999999999999999999999998864  3344   555555            4448899999999999


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC
Q 007998          233 HEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP  310 (582)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  310 (582)
                      ++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++.  .+.+..+|..++..|...|++++|+..|+++.+.  .|
T Consensus       166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p  242 (450)
T 2y4t_A          166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQ  242 (450)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred             HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence            99999875 3478899999999999999999999999874  2567899999999999999999999999999874  45


Q ss_pred             CH-HHHHHH------------HHHHHcCCCHHHHHHHHHHHhHcCCccC-----hhhHHhhhhHHhhcCCHHHHHHHHHh
Q 007998          311 DD-VSYLAA------------LCACNHAGLVDDGVRLFNSMANCGVKPN-----MKHYGSVVDLLGRAGRLQEACDIVKS  372 (582)
Q Consensus       311 ~~-~t~~~l------------l~a~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~  372 (582)
                      +. ..+..+            ..+|.+.|++++|..+|+++.+.  .|+     ..++..+..+|.+.|++++|.+.+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  320 (450)
T 2y4t_A          243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE  320 (450)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            44 334333            78899999999999999999983  233     45788999999999999999999998


Q ss_pred             C-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH------------HHHHhcC-----CchHHH
Q 007998          373 V-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS------------NLYAAYE-----RWDDVG  433 (582)
Q Consensus       373 ~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~  433 (582)
                      + ...| +...|..+..+|...|++++|...++++++++|+++..+..++            +.|...|     +.+++.
T Consensus       321 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~  400 (450)
T 2y4t_A          321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEII  400 (450)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH
T ss_pred             HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHH
Confidence            6 4345 7899999999999999999999999999999999999999988            4455556     445556


Q ss_pred             HHHHH
Q 007998          434 RVRKA  438 (582)
Q Consensus       434 ~~~~~  438 (582)
                      +.+++
T Consensus       401 ~~y~~  405 (450)
T 2y4t_A          401 KAYRK  405 (450)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66665

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.5e-22  Score=212.69  Aligned_cols=391  Identities=9%  Similarity=-0.100  Sum_probs=307.7

Q ss_pred             ccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchH
Q 007998           16 AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTN   91 (582)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~   91 (582)
                      .++.+.|...+..+++..  ++  +...   ..+...|.+ |++++|...|+++.   +.+..+|..+...+.+.|++++
T Consensus        19 ~g~~~~A~~~~~~al~~~--p~--~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~   91 (514)
T 2gw1_A           19 NKKYDDAIKYYNWALELK--ED--PVFY---SNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD   91 (514)
T ss_dssp             TSCHHHHHHHHHHHHHHC--CC--HHHH---HHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             hccHHHHHHHHHHHHhcC--cc--HHHH---HhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence            467888999999999876  35  5543   688899989 99999999999764   4577899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----------------------------------
Q 007998           92 AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLR-----------------------------------  136 (582)
Q Consensus        92 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------------------------------  136 (582)
                      |+..|+++...+. ++......++..+........+.+.+..+..                                   
T Consensus        92 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
T 2gw1_A           92 AMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI  170 (514)
T ss_dssp             HHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence            9999999998764 3444444444444332222222222211100                                   


Q ss_pred             cCC---------CCchHHHHHHHHHHHh---cCCHHHHHHHHhhcCC----------------C-ChhHHHHHHHHHHhC
Q 007998          137 HGF---------LADALLGTTLLDVYAK---VGEIVSAKKVFDEMGV----------------R-DIASWNALIAGLAQG  187 (582)
Q Consensus       137 ~g~---------~~~~~~~~~li~~y~~---~g~~~~A~~~f~~m~~----------------~-~~~~~~~li~~~~~~  187 (582)
                      ...         +.+...+..+...+..   .|++++|...|+++..                + +..+|..+...+...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (514)
T 2gw1_A          171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK  250 (514)
T ss_dssp             SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence            000         1123444444444554   8999999999987644                2 356788999999999


Q ss_pred             CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007998          188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV  267 (582)
Q Consensus       188 g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~  267 (582)
                      |++++|+..|+++.+..   |+..++..+..++...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...
T Consensus       251 ~~~~~A~~~~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  326 (514)
T 2gw1_A          251 NDPLGAHEDIKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD  326 (514)
T ss_dssp             SCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999885   338889999999999999999999999998875 33678899999999999999999999


Q ss_pred             Hhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCc
Q 007998          268 FDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVK  344 (582)
Q Consensus       268 ~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~  344 (582)
                      |++..  .+.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+ ..-.
T Consensus       327 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  405 (514)
T 2gw1_A          327 FDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL  405 (514)
T ss_dssp             HHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            99764  24567889999999999999999999999998752 23456888889999999999999999999987 2222


Q ss_pred             cC----hhhHHhhhhHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998          345 PN----MKHYGSVVDLLGR---AGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       345 ~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  415 (582)
                      ++    ...+..+...|.+   .|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++..
T Consensus       406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  485 (514)
T 2gw1_A          406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK  485 (514)
T ss_dssp             SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred             chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence            22    3478889999999   99999999999886 3334 68889999999999999999999999999999988776


Q ss_pred             HHHH
Q 007998          416 FVLL  419 (582)
Q Consensus       416 ~~~l  419 (582)
                      +..+
T Consensus       486 ~~~~  489 (514)
T 2gw1_A          486 LQAI  489 (514)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=1.2e-20  Score=199.22  Aligned_cols=386  Identities=10%  Similarity=-0.009  Sum_probs=278.9

Q ss_pred             HHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 007998           46 IIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARV  121 (582)
Q Consensus        46 ~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  121 (582)
                      |..+...|.+ |++++|...|+++.   +.+...|..+...|.+.|++++|++.|+++.+.++ .+..++..+..++...
T Consensus        28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~  106 (537)
T 3fp2_A           28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESL  106 (537)
T ss_dssp             HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHc
Confidence            3455555656 77777777777653   34666777777777777777777777777766532 2455666677777777


Q ss_pred             CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-----------------------------
Q 007998          122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-----------------------------  172 (582)
Q Consensus       122 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-----------------------------  172 (582)
                      |++++|.+.++ .+...  |+.  .+..+..+...+....|...++++...                             
T Consensus       107 g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          107 GNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             TCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             CCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence            77777777775 33221  111  111223333344444555555444221                             


Q ss_pred             --------Chh---HHHHHHHHHHhC--------CChhHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHhccCCc
Q 007998          173 --------DIA---SWNALIAGLAQG--------NLASEAVDLFKRMKMEGVFKPNE-------VTVLGALAACGHLGAW  226 (582)
Q Consensus       173 --------~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~~pd~-------~t~~~ll~a~~~~~~~  226 (582)
                              +..   .+..+...+...        |++++|+.+|+++.+..  +.+.       .++..+...+...|++
T Consensus       182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~  259 (537)
T 3fp2_A          182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNL  259 (537)
T ss_dssp             TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccH
Confidence                    110   222333222222        47899999999998764  3333       3566777788889999


Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998          227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMG  304 (582)
Q Consensus       227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  304 (582)
                      ++|...+..+.+..  |+...+..+...|...|++++|.+.|++..  .+.+..+|..+...|...|++++|+..|+++.
T Consensus       260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  337 (537)
T 3fp2_A          260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ  337 (537)
T ss_dssp             HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            99999999999875  447888899999999999999999999764  35678899999999999999999999999998


Q ss_pred             hcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCC---
Q 007998          305 RAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV----SMGT---  377 (582)
Q Consensus       305 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p---  377 (582)
                      +.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...|...|++++|.+.++++    +..+   
T Consensus       338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  415 (537)
T 3fp2_A          338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH  415 (537)
T ss_dssp             HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence            853 2235678889999999999999999999999843 345678888999999999999999999876    1111   


Q ss_pred             -CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          378 -DMVLWQTLLGACQLY----------GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       378 -~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                       ....+..+...+...          |++++|...++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus       416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence             233345556677777          999999999999999999999999999999999999999999999988654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=6.1e-20  Score=193.89  Aligned_cols=386  Identities=8%  Similarity=-0.045  Sum_probs=289.7

Q ss_pred             ccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchH
Q 007998           16 AVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTN   91 (582)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~   91 (582)
                      .++.+.|...+..+++.... +  +..   |..+...|.+ |++++|.+.|+++.   +.+..+|..+...+...|++++
T Consensus        38 ~g~~~~A~~~~~~al~~~p~-~--~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  111 (537)
T 3fp2_A           38 AKNFNEAIKYYQYAIELDPN-E--PVF---YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTD  111 (537)
T ss_dssp             TTCCC-CHHHHHHHHHHCTT-C--HHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             hccHHHHHHHHHHHHhhCCC-C--cHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHH
Confidence            45677788888888886522 2  333   4788888988 99999999999864   4578899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCchH---------------------
Q 007998           92 AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHG------FLADAL---------------------  144 (582)
Q Consensus        92 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~---------------------  144 (582)
                      |+..|+.+ ..  .|+..  ...+..+...+....|...++.++...      ..|+..                     
T Consensus       112 A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (537)
T 3fp2_A          112 AMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS  186 (537)
T ss_dssp             HHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred             HHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence            99999744 32  22221  112333344445567777777765431      111111                     


Q ss_pred             ---------HHHHHHHHHHhc--------CCHHHHHHHHhhcCCC---C-------hhHHHHHHHHHHhCCChhHHHHHH
Q 007998          145 ---------LGTTLLDVYAKV--------GEIVSAKKVFDEMGVR---D-------IASWNALIAGLAQGNLASEAVDLF  197 (582)
Q Consensus       145 ---------~~~~li~~y~~~--------g~~~~A~~~f~~m~~~---~-------~~~~~~li~~~~~~g~~~~A~~~~  197 (582)
                               ....+...+...        |++++|..+|+++...   +       ..+|..+...+...|++++|++.|
T Consensus       187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~  266 (537)
T 3fp2_A          187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL  266 (537)
T ss_dssp             CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence                     233333333322        4789999999988543   2       235777788899999999999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCC
Q 007998          198 KRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRK  275 (582)
Q Consensus       198 ~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~  275 (582)
                      ++....   .|+..++..+...+...|++++|...+..+.+... .+..++..+...|...|++++|.+.|++..  .+.
T Consensus       267 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  342 (537)
T 3fp2_A          267 QESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE  342 (537)
T ss_dssp             HHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence            999987   56688999999999999999999999999998763 368889999999999999999999999764  245


Q ss_pred             CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC-ccC----hhhH
Q 007998          276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV-KPN----MKHY  350 (582)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~  350 (582)
                      +...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+++.+... .++    ...+
T Consensus       343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  421 (537)
T 3fp2_A          343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL  421 (537)
T ss_dssp             CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence            67899999999999999999999999998863 33456888889999999999999999999987321 111    1123


Q ss_pred             HhhhhHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998          351 GSVVDLLGRA----------GRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV  417 (582)
Q Consensus       351 ~~li~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  417 (582)
                      ..+...|.+.          |++++|...+++. ...| +...|..+...+...|++++|...+++++++.|.++....
T Consensus       422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  500 (537)
T 3fp2_A          422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ  500 (537)
T ss_dssp             HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred             HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            3345667777          9999999999987 3334 6788999999999999999999999999999998765543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=1.3e-18  Score=173.12  Aligned_cols=308  Identities=12%  Similarity=0.019  Sum_probs=193.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHH
Q 007998          108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGL  184 (582)
Q Consensus       108 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~  184 (582)
                      ...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..   ..+...|..+...|
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            4456666777777788888888887777764 3356677777777777777777777777653   23556777777777


Q ss_pred             HhCCChhHHHHHHHHHHHcCCCC---CCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 007998          185 AQGNLASEAVDLFKRMKMEGVFK---PNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL  261 (582)
Q Consensus       185 ~~~g~~~~A~~~~~~m~~~g~~~---pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~  261 (582)
                      ...|++++|+..|++..+..  +   .+...+..+.....                       ...+..+...|...|++
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence            77777777777777776552  2   23333333311000                       00112234555566666


Q ss_pred             HHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 007998          262 DKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA  339 (582)
Q Consensus       262 ~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~  339 (582)
                      ++|.+.|+++.  .+.+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus       137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            66666665543  23445556666666666666666666666665531 2234455556666666666666666666665


Q ss_pred             HcCCccChhhH------------HhhhhHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChHHHHHH
Q 007998          340 NCGVKPNMKHY------------GSVVDLLGRAGRLQEACDIVKSV-SMGTD-M----VLWQTLLGACQLYGDVEMAEIA  401 (582)
Q Consensus       340 ~~~~~~~~~~~------------~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~  401 (582)
                      +.. +.+...+            ..+...+.+.|++++|.+.++++ ...|+ .    ..|..+...+...|++++|...
T Consensus       216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  294 (359)
T 3ieg_A          216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI  294 (359)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            521 1111111            12355677788888888887765 22232 2    2344566778888888888888


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            888888888888888888888888888888888888877643

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=1e-18  Score=173.84  Aligned_cols=315  Identities=10%  Similarity=0.003  Sum_probs=221.2

Q ss_pred             ChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 007998           72 STNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLD  151 (582)
Q Consensus        72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~  151 (582)
                      |+..|..+...+...|++++|+..|+++.+..+ .+..++..+...+...|++++|...++.+++.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            456788999999999999999999999988643 357788899999999999999999999999885 346788999999


Q ss_pred             HHHhcCCHHHHHHHHhhcCCC------ChhHHHHH------------HHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHH
Q 007998          152 VYAKVGEIVSAKKVFDEMGVR------DIASWNAL------------IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV  213 (582)
Q Consensus       152 ~y~~~g~~~~A~~~f~~m~~~------~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~  213 (582)
                      +|.+.|++++|...|++....      +...|..+            ...+...|++++|++.|+++.+..  +.+...+
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~  157 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELR  157 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHH
Confidence            999999999999999988542      33444444            345556666666666666655543  3444455


Q ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCCh
Q 007998          214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG  293 (582)
Q Consensus       214 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~  293 (582)
                      ..+...+...|++++|...++.+.+..                                 +.+..+|..+...|...|++
T Consensus       158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------------------------~~~~~~~~~la~~~~~~~~~  204 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAISDLKAASKLK---------------------------------SDNTEAFYKISTLYYQLGDH  204 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTC---------------------------------SCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------------CCCHHHHHHHHHHHHHcCCH
Confidence            555555555555555555555554432                                 22344444444445555555


Q ss_pred             hHHHHHHHHHHhcCCCCCH-HH------------HHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh----hhHHhhhhH
Q 007998          294 PRALELFEQMGRAGVKPDD-VS------------YLAALCACNHAGLVDDGVRLFNSMANCGVKPNM----KHYGSVVDL  356 (582)
Q Consensus       294 ~~A~~~~~~m~~~g~~p~~-~t------------~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~  356 (582)
                      ++|+..|++..+.  .|+. ..            ...+...+.+.|++++|...++++.+.... +.    ..+..+...
T Consensus       205 ~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~  281 (359)
T 3ieg_A          205 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHC  281 (359)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHH
Confidence            5555555544442  1221 11            122355677788888888888888773211 22    234557778


Q ss_pred             HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 007998          357 LGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY  426 (582)
Q Consensus       357 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  426 (582)
                      |...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++.....+..++...
T Consensus       282 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          282 FSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            88889999999888876 3334 7888999999999999999999999999999999988888877776543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.83  E-value=3.1e-18  Score=168.49  Aligned_cols=284  Identities=11%  Similarity=-0.013  Sum_probs=177.9

Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 007998          142 DALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALA  218 (582)
Q Consensus       142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~  218 (582)
                      +..++..+...+...|++++|.++|+++.   ..+...+..++..+...|++++|+.+++++.+..  +.+...+..+..
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~   98 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGC   98 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHH
Confidence            33444445555555555555555555542   1233444445555555566666666666655543  344555555555


Q ss_pred             HHhccC-CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhH
Q 007998          219 ACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPR  295 (582)
Q Consensus       219 a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~  295 (582)
                      .+...| ++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..  .+.+...|..+...|...|++++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence            666666 5666666666655543 2245556666666666666666666666543  13344556666666667777777


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcC--------CccChhhHHhhhhHHhhcCCHHHHH
Q 007998          296 ALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCG--------VKPNMKHYGSVVDLLGRAGRLQEAC  367 (582)
Q Consensus       296 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~  367 (582)
                      |+..|++..+.. +.+...+..+...+...|++++|...++++.+..        .+.....+..+...|.+.|++++|.
T Consensus       178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            777777666532 2234566666667777777777777777666511        1233456777777888888888888


Q ss_pred             HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH-hcCCc
Q 007998          368 DIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA-AYERW  429 (582)
Q Consensus       368 ~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~  429 (582)
                      +.+++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.++. ..|+.
T Consensus       257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence            887765 2223 56778888888888899999999999998888888888888888873 44543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.83  E-value=3e-19  Score=176.45  Aligned_cols=342  Identities=11%  Similarity=0.018  Sum_probs=161.4

Q ss_pred             CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998           56 NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL  135 (582)
Q Consensus        56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  135 (582)
                      |++++|...+++++.|+  +|..|+.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|+..++.+.
T Consensus        17 ~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar   88 (449)
T 1b89_A           17 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR   88 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            89999999999997664  9999999999999999999999763      577899999999999999999999888877


Q ss_pred             HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHH
Q 007998          136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLG  215 (582)
Q Consensus       136 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~  215 (582)
                      +.  .+++.+.+.|+.+|.++|++++++++|+.   |+..+|+.+...|...|++++|...|..+          ..|..
T Consensus        89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~  153 (449)
T 1b89_A           89 KK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGR  153 (449)
T ss_dssp             ----------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TCHHH
T ss_pred             Hh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHH
Confidence            75  45678899999999999999999988864   67789999999999999999999999977          25899


Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhH
Q 007998          216 ALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPR  295 (582)
Q Consensus       216 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  295 (582)
                      +..++.++|++++|.+.+.++      .++.+|..++.+|...|+++.|......+.  ..+.-...++..|.+.|.+++
T Consensus       154 LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          154 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEE  225 (449)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCHHH
Confidence            999999999999999999887      378999999999999999999988777654  333334468999999999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHhHcCCcc------ChhhHHhhhhHHhhcCCHHHHH
Q 007998          296 ALELFEQMGRAGVKPDDVSYLAALCACNH--AGLVDDGVRLFNSMANCGVKP------NMKHYGSVVDLLGRAGRLQEAC  367 (582)
Q Consensus       296 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~  367 (582)
                      |+.+++...... +-....|+-+.-++++  .+++.+..+.|..-  -+++|      +..+|..++-.|..-++++.|.
T Consensus       226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~  302 (449)
T 1b89_A          226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  302 (449)
T ss_dssp             HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence            999999987543 2233455555555554  44555555555422  34555      4678999999999999999998


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHH
Q 007998          368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVR  436 (582)
Q Consensus       368 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~  436 (582)
                      ..+-+-+  |+..--..+.....+..+.+.--+...-.++..|   ...+.|..++...=+...+.+++
T Consensus       303 ~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p---~~l~~ll~~l~~~ld~~r~v~~~  366 (449)
T 1b89_A          303 ITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYF  366 (449)
T ss_dssp             HHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred             HHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCcHHHHHHH
Confidence            8766553  1211112223333445555544444444444444   33444444444433444444433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.81  E-value=4.6e-17  Score=160.05  Aligned_cols=282  Identities=9%  Similarity=-0.054  Sum_probs=172.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHH
Q 007998          109 LTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLA  185 (582)
Q Consensus       109 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~  185 (582)
                      ..+..+...+...|++++|.++++.+++.. +.+...+..++..+.+.|++++|...|+++.   ..+...|..+...+.
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  101 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYL  101 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            334444444444455555555555544443 2223333444444455555555555554442   123445555555566


Q ss_pred             hCC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 007998          186 QGN-LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKA  264 (582)
Q Consensus       186 ~~g-~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A  264 (582)
                      ..| ++++|++.|++.....  +.+...+..+...+...|++++|...++++.+.... +...+..+...|...|++++|
T Consensus       102 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A  178 (330)
T 3hym_B          102 MVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLA  178 (330)
T ss_dssp             HSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHH
Confidence            666 5666666666665543  344555666666666666666666666666655322 344555567777777777777


Q ss_pred             HHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007998          265 FEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG--------VKPDDVSYLAALCACNHAGLVDDGVRL  334 (582)
Q Consensus       265 ~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~t~~~ll~a~~~~g~~~~a~~~  334 (582)
                      .+.|++..  .+.+...|..+...|...|++++|+..|++..+..        .+.+..++..+..++...|++++|...
T Consensus       179 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  258 (330)
T 3hym_B          179 ERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY  258 (330)
T ss_dssp             HHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            77777553  23456677777777777888888887777776531        122345777788888888888888888


Q ss_pred             HHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCCh
Q 007998          335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGAC-QLYGDV  395 (582)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~-~~~g~~  395 (582)
                      ++++.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++ ...|+.
T Consensus       259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence            88888733 235667778888888888888888888876 5555 566777777666 344543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.80  E-value=9e-18  Score=168.07  Aligned_cols=279  Identities=12%  Similarity=-0.031  Sum_probs=209.3

Q ss_pred             hcCCHHHHHH-HHhhcCC---C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCc
Q 007998          155 KVGEIVSAKK-VFDEMGV---R----DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW  226 (582)
Q Consensus       155 ~~g~~~~A~~-~f~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~  226 (582)
                      -.|++++|.. .|++...   .    +...|..+...+.+.|++++|+..|+++.+..  +.+..++..+..++...|++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~  114 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQE  114 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCH
Confidence            3466777776 6664421   1    34557777777788888888888888877765  56677777777778888888


Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC-CHHHHHH---------------HHHHHHh
Q 007998          227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK-SLVTWNT---------------MVMAFAV  289 (582)
Q Consensus       227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~-~~~~~~~---------------li~~~~~  289 (582)
                      ++|...++++++.. +.+..++..+...|.+.|++++|.+.|+++. ..| +...+..               .+..+..
T Consensus       115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (368)
T 1fch_A          115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS  193 (368)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence            88888888777765 3366777778888888888888888887654 122 2222221               1333348


Q ss_pred             CCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHH
Q 007998          290 HGDGPRALELFEQMGRAGVK-PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACD  368 (582)
Q Consensus       290 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  368 (582)
                      .|++++|+..|+++.+.... ++..++..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|.+
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            89999999999999875321 147788889999999999999999999998842 3456788899999999999999999


Q ss_pred             HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------chhHHHHHHHHHhcCCchHHHHH
Q 007998          369 IVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN-----------CGDFVLLSNLYAAYERWDDVGRV  435 (582)
Q Consensus       369 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~  435 (582)
                      .++++ ...| +...|..+...+...|++++|...++++++..|++           +.++..++.+|...|++++|..+
T Consensus       273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  352 (368)
T 1fch_A          273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  352 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence            99886 3334 68899999999999999999999999999998877           78999999999999999999998


Q ss_pred             HH
Q 007998          436 RK  437 (582)
Q Consensus       436 ~~  437 (582)
                      ++
T Consensus       353 ~~  354 (368)
T 1fch_A          353 DA  354 (368)
T ss_dssp             HT
T ss_pred             HH
Confidence            76

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.80  E-value=1.5e-15  Score=158.31  Aligned_cols=354  Identities=11%  Similarity=0.017  Sum_probs=292.0

Q ss_pred             CCChhHHHHHHHHHHc----CCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCC
Q 007998           70 APSTNDFNAVLRGLAH----SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR----VLALFETLQIHSHVLRHGFLA  141 (582)
Q Consensus        70 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~  141 (582)
                      ..+..++..+...|..    .+++++|+..|++..+.|   +...+..+...+..    .++.++|.+.++...+.|   
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---  109 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---  109 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence            4577888888888887    889999999999998764   55677777788887    889999999999998876   


Q ss_pred             chHHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCCHHH
Q 007998          142 DALLGTTLLDVYAK----VGEIVSAKKVFDEMGVR-DIASWNALIAGLAQ----GNLASEAVDLFKRMKMEGVFKPNEVT  212 (582)
Q Consensus       142 ~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~pd~~t  212 (582)
                      ++..+..|..+|..    .++.++|.+.|++.... +..++..+...|..    .+++++|++.|++..+.|    +...
T Consensus       110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a  185 (490)
T 2xm6_A          110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWS  185 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHH
Confidence            55667778888888    88999999999887543 67788888888887    789999999999988765    5677


Q ss_pred             HHHHHHHHhc----cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcccCCCCHHHHHHHH
Q 007998          213 VLGALAACGH----LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK----CGLLDKAFEVFDNIKCRKSLVTWNTMV  284 (582)
Q Consensus       213 ~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~li  284 (582)
                      +..+...+..    .++.++|...+.+..+.+   +...+..+..+|..    .+++++|.+.|++.....+...+..+.
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg  262 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLG  262 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7777777776    789999999999998875   56778888888887    789999999999876356777888888


Q ss_pred             HHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHhHcCCccChhhHHhhhh
Q 007998          285 MAFAV----HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA-----GLVDDGVRLFNSMANCGVKPNMKHYGSVVD  355 (582)
Q Consensus       285 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~  355 (582)
                      ..|..    .++.++|+..|++..+.|   +...+..+...+...     +++++|...|++..+.+   +...+..|..
T Consensus       263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  336 (490)
T 2xm6_A          263 YILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGA  336 (490)
T ss_dssp             HHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence            88888    899999999999998764   445666677777776     89999999999998854   3456667777


Q ss_pred             HHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh---
Q 007998          356 LLGRAG---RLQEACDIVKSVSMGTDMVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA---  425 (582)
Q Consensus       356 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---  425 (582)
                      +|.+.|   ++++|.+.|++.-...+...+..|...|..    .+++++|...++++.+.+  ++.++..|+.+|..   
T Consensus       337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g  414 (490)
T 2xm6_A          337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG  414 (490)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred             HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence            887766   788999999877323578888999999988    899999999999998875  57789999999998   


Q ss_pred             -cCCchHHHHHHHHHHhCCC
Q 007998          426 -YERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       426 -~g~~~~a~~~~~~m~~~~~  444 (582)
                       .+++++|...+++..+.+.
T Consensus       415 ~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          415 VERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHCCC
Confidence             8999999999999887663

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.79  E-value=2.8e-16  Score=165.69  Aligned_cols=391  Identities=8%  Similarity=-0.010  Sum_probs=287.1

Q ss_pred             chHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHH-
Q 007998           44 SKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKAC-  118 (582)
Q Consensus        44 ~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-  118 (582)
                      ..|..++.. .+ |++++|+.+|+++.   +.+...|..++..+.+.|++++|..+|++++..  .|+...|...+... 
T Consensus        14 ~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~   90 (530)
T 2ooe_A           14 DAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVR   90 (530)
T ss_dssp             HHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHH
Confidence            346788884 55 99999999999874   346778999999999999999999999999885  36766777666533 


Q ss_pred             HhcCChHHHHH----HHHHHHHc-CCCC-chHHHHHHHHHHHh---------cCCHHHHHHHHhhcCC-CC---hhHHHH
Q 007998          119 ARVLALFETLQ----IHSHVLRH-GFLA-DALLGTTLLDVYAK---------VGEIVSAKKVFDEMGV-RD---IASWNA  179 (582)
Q Consensus       119 ~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~f~~m~~-~~---~~~~~~  179 (582)
                      ...|+.+.|++    +|+.++.. |..| +..+|...+....+         .|+++.|.++|++... |+   ...|..
T Consensus        91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~  170 (530)
T 2ooe_A           91 ETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRD  170 (530)
T ss_dssp             HHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHH
T ss_pred             HHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence            34577766655    77777653 5433 46788888877665         7899999999998753 32   234443


Q ss_pred             HHHHH-------------HhCCChhHHHHHHHHHH------HcC---CCCCCH--------HHHHHHHHHHhc----cCC
Q 007998          180 LIAGL-------------AQGNLASEAVDLFKRMK------MEG---VFKPNE--------VTVLGALAACGH----LGA  225 (582)
Q Consensus       180 li~~~-------------~~~g~~~~A~~~~~~m~------~~g---~~~pd~--------~t~~~ll~a~~~----~~~  225 (582)
                      .....             .+.+++..|..++.++.      +..   + +|+.        ..|...+.....    .++
T Consensus       171 ~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~-~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~  249 (530)
T 2ooe_A          171 YNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSV-PPQNTPQEAQQVDMWKKYIQWEKSNPLRTED  249 (530)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCC-CCC--CCHHHHHHHHHHHHHHHHHCSSCCSC
T ss_pred             HHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccC-CCCCChhHHHHHHHHHHHHHHHHcCCccCCc
Confidence            32211             13456777877777632      221   2 4442        344444433222    123


Q ss_pred             c----HHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhccc--C-CCCHHHHHHHH
Q 007998          226 W----KEGDKIHEYIREERLDMNVVVCNAVIDMYAK-------CGLLD-------KAFEVFDNIK--C-RKSLVTWNTMV  284 (582)
Q Consensus       226 ~----~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~--~-~~~~~~~~~li  284 (582)
                      .    +.+..+|++.+... +.+..+|..++..+.+       .|+++       +|..+|++..  . +.+...|..++
T Consensus       250 ~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~  328 (530)
T 2ooe_A          250 QTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA  328 (530)
T ss_dssp             SHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            3    36778899888864 3468888888888876       79987       8999999765  1 34688999999


Q ss_pred             HHHHhCCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhH-HhhcC
Q 007998          285 MAFAVHGDGPRALELFEQMGRAGVKPDD--VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL-LGRAG  361 (582)
Q Consensus       285 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g  361 (582)
                      ..+.+.|++++|..+|+++.+.  .|+.  ..|...+..+.+.|++++|..+|++..+.. +.+...|...... +...|
T Consensus       329 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~  405 (530)
T 2ooe_A          329 DYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK  405 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcC
Confidence            9999999999999999999984  5653  478888888889999999999999998732 1223333322222 34689


Q ss_pred             CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch----hHHHHHHHHHhcCCchHHHHH
Q 007998          362 RLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG----DFVLLSNLYAAYERWDDVGRV  435 (582)
Q Consensus       362 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~  435 (582)
                      ++++|.++|++. ...| +...|..++..+...|+.++|..+|+++++..|.++.    .+...+......|+.+.+..+
T Consensus       406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~  485 (530)
T 2ooe_A          406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV  485 (530)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999976 3334 6889999999999999999999999999998876654    677778888889999999999


Q ss_pred             HHHHHhC
Q 007998          436 RKAMKNR  442 (582)
Q Consensus       436 ~~~m~~~  442 (582)
                      .+++.+.
T Consensus       486 ~~r~~~~  492 (530)
T 2ooe_A          486 EKRRFTA  492 (530)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.79  E-value=9.3e-16  Score=159.98  Aligned_cols=351  Identities=12%  Similarity=0.027  Sum_probs=292.2

Q ss_pred             CCHHHHHHHHhcCC-CCChhHHHHHHHHHHc----CCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChHH
Q 007998           56 NELAYAHALFRQIN-APSTNDFNAVLRGLAH----SSKPTNAVLWYRQMLRGSHRSDALTCSFALKACAR----VLALFE  126 (582)
Q Consensus        56 g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~  126 (582)
                      ++++.|...|++.. ..+..++..|...|..    .+++++|+..|++..+.|   +...+..+...+..    .+++++
T Consensus        57 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~  133 (490)
T 2xm6_A           57 KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAE  133 (490)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence            89999999998754 3577889999999998    899999999999998865   56677777778877    789999


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHh----CCChhHHHHHH
Q 007998          127 TLQIHSHVLRHGFLADALLGTTLLDVYAK----VGEIVSAKKVFDEMGV-RDIASWNALIAGLAQ----GNLASEAVDLF  197 (582)
Q Consensus       127 a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~  197 (582)
                      |.+.++...+.|   +...+..|..+|..    .++.++|.+.|++..+ .+..++..+...|..    .+++++|++.|
T Consensus       134 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  210 (490)
T 2xm6_A          134 SVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWY  210 (490)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence            999999998886   56677888888988    8899999999988753 478889999999988    89999999999


Q ss_pred             HHHHHcCCCCCCHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHh
Q 007998          198 KRMKMEGVFKPNEVTVLGALAACGH----LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK----CGLLDKAFEVFD  269 (582)
Q Consensus       198 ~~m~~~g~~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~  269 (582)
                      ++..+.|    +..++..+...+..    .++.++|..++++..+.+   +...+..+..+|..    .++.++|.+.|+
T Consensus       211 ~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~  283 (490)
T 2xm6_A          211 RKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR  283 (490)
T ss_dssp             HHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred             HHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence            9998765    45667777777765    789999999999998865   56677788888888    899999999999


Q ss_pred             cccCCCCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHhHc
Q 007998          270 NIKCRKSLVTWNTMVMAFAVH-----GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG---LVDDGVRLFNSMANC  341 (582)
Q Consensus       270 ~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~~~~~  341 (582)
                      +.....+...+..+...|...     +++++|+..|++..+.|   +...+..+...+...|   +.++|.++|++..+.
T Consensus       284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~  360 (490)
T 2xm6_A          284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK  360 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence            876355778888899999887     89999999999998865   4456667777777766   789999999999985


Q ss_pred             CCccChhhHHhhhhHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC--
Q 007998          342 GVKPNMKHYGSVVDLLGR----AGRLQEACDIVKSVSMGTDMVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSN--  411 (582)
Q Consensus       342 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~--  411 (582)
                         .+...+..|..+|..    .+++++|.+.|++.-...+...+..|...|..    .+++++|...|+++.+.+|+  
T Consensus       361 ---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  437 (490)
T 2xm6_A          361 ---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF  437 (490)
T ss_dssp             ---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred             ---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence               356777788888888    89999999999987323468888889998988    89999999999999999954  


Q ss_pred             -CchhHHHHHHHHHh
Q 007998          412 -NCGDFVLLSNLYAA  425 (582)
Q Consensus       412 -~~~~~~~l~~~~~~  425 (582)
                       ++.....|+.++..
T Consensus       438 ~~~~a~~~l~~~~~~  452 (490)
T 2xm6_A          438 GTENRNITEKKLTAK  452 (490)
T ss_dssp             HHHHHHHHHTTSCHH
T ss_pred             CCHHHHHHHHhcCHh
Confidence             66666666655543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.78  E-value=2.7e-16  Score=163.11  Aligned_cols=369  Identities=10%  Similarity=-0.040  Sum_probs=249.4

Q ss_pred             ChhHHHHHHHHHHcCCCchHHHHHHHHHHhC-----C--CCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----
Q 007998           72 STNDFNAVLRGLAHSSKPTNAVLWYRQMLRG-----S--HRS-DALTCSFALKACARVLALFETLQIHSHVLRHG-----  138 (582)
Q Consensus        72 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----  138 (582)
                      ....||.|...+...|++++|++.|++.++.     +  ..| ...+|..+..++...|++++|...++.+++..     
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3557899999999999999999999887541     1  123 34578889999999999999999998886531     


Q ss_pred             -C-CCchHHHHHHHHHHHhc--CCHHHHHHHHhhcC---CCChhHHHHHHHH---HHhCCChhHHHHHHHHHHHcCCCCC
Q 007998          139 -F-LADALLGTTLLDVYAKV--GEIVSAKKVFDEMG---VRDIASWNALIAG---LAQGNLASEAVDLFKRMKMEGVFKP  208 (582)
Q Consensus       139 -~-~~~~~~~~~li~~y~~~--g~~~~A~~~f~~m~---~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~p  208 (582)
                       . .....+++.+..++.+.  +++++|...|++..   ..+...+..+...   +...++.++|++.|++..+..  +.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~  207 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PD  207 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SS
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Cc
Confidence             1 11235566555555554  46899999998764   2355566655544   445688889999999988775  56


Q ss_pred             CHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHH
Q 007998          209 NEVTVLGALAACGH----LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNT  282 (582)
Q Consensus       209 d~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~  282 (582)
                      +..++..+...+..    .++.++|.+++++..+.. +.+..++..+...|.+.|++++|...|++..  .+.+..+|..
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  286 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ  286 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence            67777766655544    467889999999988875 3467788899999999999999999998764  2456677777


Q ss_pred             HHHHHHhC-------------------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCC
Q 007998          283 MVMAFAVH-------------------GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGV  343 (582)
Q Consensus       283 li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~  343 (582)
                      +...|...                   +..++|+..|++..+.. +.+..++..+...+...|++++|...|++..+...
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~  365 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL  365 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence            77666432                   33567888888877642 22335677888899999999999999999988443


Q ss_pred             ccCh--hhHHhhhh-HHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998          344 KPNM--KHYGSVVD-LLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL  419 (582)
Q Consensus       344 ~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  419 (582)
                      .+..  ..+..+.. .+...|++++|++.|++. .+.|+...+...         .+.+..++++.++.+|+++.+|..|
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~L  436 (472)
T 4g1t_A          366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVL  436 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3322  12223332 235679999999999875 556664433322         3456678888899999999999999


Q ss_pred             HHHHHhcCCchHHHHHHHHHHhCCCccCCcccEE
Q 007998          420 SNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYI  453 (582)
Q Consensus       420 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~  453 (582)
                      +.+|...|++++|.+.+++..+.+...+...+|+
T Consensus       437 G~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          437 AFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             HHHHHHHHHCC-----------------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            9999999999999999999988776555556664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.78  E-value=7.4e-18  Score=168.73  Aligned_cols=262  Identities=9%  Similarity=-0.056  Sum_probs=209.9

Q ss_pred             ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998          173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI  252 (582)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  252 (582)
                      +...|..+...+.+.|++++|++.|+++.+..  +.+..++..+..++...|++++|...++++++.. +.+...+..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            45568888888889999999999999988875  6678888888899999999999999999888875 33578888899


Q ss_pred             HHHHhcCCHHHHHHHHhccc-CCCC-----------HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCC-CCHHHHHHHH
Q 007998          253 DMYAKCGLLDKAFEVFDNIK-CRKS-----------LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK-PDDVSYLAAL  319 (582)
Q Consensus       253 ~~y~~~g~~~~A~~~~~~~~-~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll  319 (582)
                      ..|.+.|++++|.+.|+++. ..|+           ...+..+...+...|++++|+..|+++.+.... ++..++..+.
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999998764 1121           223445578889999999999999999885322 1577888999


Q ss_pred             HHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007998          320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEM  397 (582)
Q Consensus       320 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~  397 (582)
                      ..+...|++++|...|+++.+.. +.+...|..+..+|.+.|++++|.+.++++ ...| +..+|..+...|...|++++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999998843 345778999999999999999999999876 3345 58899999999999999999


Q ss_pred             HHHHHHHHHHcCCC------------CchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998          398 AEIASRKLVEMGSN------------NCGDFVLLSNLYAAYERWDDVGRVRKA  438 (582)
Q Consensus       398 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~  438 (582)
                      |...+++++++.|+            +...+..++.++...|+.+.+.++.++
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999998875            367889999999999999988887653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.77  E-value=6e-17  Score=162.08  Aligned_cols=285  Identities=11%  Similarity=-0.006  Sum_probs=146.2

Q ss_pred             CCCchHHHH-HHHHHHhCCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHH
Q 007998           86 SSKPTNAVL-WYRQMLRGSH---RSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVS  161 (582)
Q Consensus        86 ~g~~~~A~~-~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~  161 (582)
                      .|++++|++ .|++......   ..+...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|++++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence            356666666 6665543211   1123456666666777777777777777777664 3355666677777777777777


Q ss_pred             HHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHH---------------HHHHhcc
Q 007998          162 AKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGA---------------LAACGHL  223 (582)
Q Consensus       162 A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~l---------------l~a~~~~  223 (582)
                      |...|++..   ..+..+|..+...|...|++++|++.|+++....  +.+...+...               +..+...
T Consensus       117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (368)
T 1fch_A          117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD  194 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence            777776553   3356677777777777777777777777777653  2222222111               1111244


Q ss_pred             CCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998          224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM  303 (582)
Q Consensus       224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  303 (582)
                      |++++|...++++++.....                               ++..+|..+...|...|++++|+..|+++
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  243 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTS-------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFTAA  243 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTS-------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCc-------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44444444444444432111                               02444444455555555555555555544


Q ss_pred             HhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-----
Q 007998          304 GRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-----  377 (582)
Q Consensus       304 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----  377 (582)
                      .+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|.+.++++ ...|     
T Consensus       244 l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  321 (368)
T 1fch_A          244 LSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP  321 (368)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             HHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc
Confidence            4421 1123444444445555555555555555544421 123344444555555555555555555443 1001     


Q ss_pred             -------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998          378 -------DMVLWQTLLGACQLYGDVEMAEIASRKLV  406 (582)
Q Consensus       378 -------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  406 (582)
                             ...+|..+..++...|++++|..++++.+
T Consensus       322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence                   25566666666666677766666665443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.76  E-value=4.3e-17  Score=163.16  Aligned_cols=228  Identities=13%  Similarity=0.048  Sum_probs=152.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 007998          107 DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAG  183 (582)
Q Consensus       107 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~  183 (582)
                      +...+..+...+...|++++|.+.++.+++.. +.+..++..+..+|.+.|++++|...|++..   ..+..+|..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34456667777777777777777777777764 3356677777777777777777777777653   3356778888888


Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCC-----------HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC-chhHHHHH
Q 007998          184 LAQGNLASEAVDLFKRMKMEGVFKPN-----------EVTVLGALAACGHLGAWKEGDKIHEYIREERLDM-NVVVCNAV  251 (582)
Q Consensus       184 ~~~~g~~~~A~~~~~~m~~~g~~~pd-----------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l  251 (582)
                      |...|++++|++.|+++.+..   |+           ...+..+...+...|++++|..+++++++..... +..++..+
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQN---PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC---HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhC---ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            888888888888888877652   22           1223334666777777777777777777664321 46677777


Q ss_pred             HHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCH
Q 007998          252 IDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLV  328 (582)
Q Consensus       252 i~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~  328 (582)
                      ...|.+.|++++|.+.|++..  .+.+..+|+.+...|...|++++|+..|+++.+.  .|+ ..++..+..+|...|++
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCH
Confidence            777777777777777777653  2445667777777777777777777777777664  333 55666777777777777


Q ss_pred             HHHHHHHHHHhH
Q 007998          329 DDGVRLFNSMAN  340 (582)
Q Consensus       329 ~~a~~~~~~~~~  340 (582)
                      ++|...|+++.+
T Consensus       298 ~~A~~~~~~al~  309 (365)
T 4eqf_A          298 REAVSNFLTALS  309 (365)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777777777766

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.75  E-value=1.2e-16  Score=156.68  Aligned_cols=258  Identities=10%  Similarity=-0.059  Sum_probs=179.7

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY  255 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y  255 (582)
                      .|..+...+...|++++|+.+|+++.+..  +.+..++..+..++...|++++|...++++.+.. +.+...+..+...|
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   99 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH   99 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence            34445555555555555555555555543  3445555555555555555555555555555543 22445555555566


Q ss_pred             HhcCCHHHHHHHHhccc-C-CCCHHHHHHH--------------HH-HHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 007998          256 AKCGLLDKAFEVFDNIK-C-RKSLVTWNTM--------------VM-AFAVHGDGPRALELFEQMGRAGVKPDDVSYLAA  318 (582)
Q Consensus       256 ~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l  318 (582)
                      .+.|++++|.+.|+++. . +.+...+..+              .. .+...|++++|+..++++.+.. +.+...+..+
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  178 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL  178 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence            66666666666555443 1 1122222222              22 3667788889999998888753 3356778888


Q ss_pred             HHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007998          319 LCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVE  396 (582)
Q Consensus       319 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~  396 (582)
                      ...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+++
T Consensus       179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence            888889999999999999888743 345677888889999999999999999876 3334 6888999999999999999


Q ss_pred             HHHHHHHHHHHcCCC------------CchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998          397 MAEIASRKLVEMGSN------------NCGDFVLLSNLYAAYERWDDVGRVRKA  438 (582)
Q Consensus       397 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~  438 (582)
                      +|...++++++..|.            ++..+..++.+|...|++++|..++++
T Consensus       258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            999999999999998            688999999999999999999998864

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=5.3e-15  Score=155.89  Aligned_cols=365  Identities=10%  Similarity=0.029  Sum_probs=270.0

Q ss_pred             CChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 007998           71 PSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLL  150 (582)
Q Consensus        71 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li  150 (582)
                      .|...|..++. +.+.|++++|..+|+++++.. +-+...|...+..+.+.|+++.|+++|+.+++..  |+...|...+
T Consensus        11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~   86 (530)
T 2ooe_A           11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL   86 (530)
T ss_dssp             TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence            48889999998 478999999999999999863 3356678899999999999999999999999874  4677777777


Q ss_pred             H-HHHhcCCHHHHHH----HHhhcC------CCChhHHHHHHHHHHh---------CCChhHHHHHHHHHHHcCCCCCCH
Q 007998          151 D-VYAKVGEIVSAKK----VFDEMG------VRDIASWNALIAGLAQ---------GNLASEAVDLFKRMKMEGVFKPNE  210 (582)
Q Consensus       151 ~-~y~~~g~~~~A~~----~f~~m~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~pd~  210 (582)
                      . .....|+.+.|.+    +|++..      ..+...|...+....+         .|++++|..+|++.+.... .+..
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~-~~~~  165 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM-INIE  165 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC-TTHH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh-hhHH
Confidence            5 3345677777665    666541      2356788888877655         6889999999999987421 2212


Q ss_pred             HHHHHHHHH---H----------hccCCcHHHHHHHHHHH------HcC---CCCc--------hhHHHHHHHHHHhc--
Q 007998          211 VTVLGALAA---C----------GHLGAWKEGDKIHEYIR------EER---LDMN--------VVVCNAVIDMYAKC--  258 (582)
Q Consensus       211 ~t~~~ll~a---~----------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~li~~y~~~--  258 (582)
                      ..|......   .          ...+++..|..++..+.      +..   ++|+        ...|...+......  
T Consensus       166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~  245 (530)
T 2ooe_A          166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL  245 (530)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence            333322221   1          13455677777766532      111   2333        24555555443332  


Q ss_pred             --CCH----HHHHHHHhccc--CCCCHHHHHHHHHHHHh-------CCChh-------HHHHHHHHHHhcCCCCC-HHHH
Q 007998          259 --GLL----DKAFEVFDNIK--CRKSLVTWNTMVMAFAV-------HGDGP-------RALELFEQMGRAGVKPD-DVSY  315 (582)
Q Consensus       259 --g~~----~~A~~~~~~~~--~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~-~~t~  315 (582)
                        ++.    +.|..+|++..  .+.+...|..++..+.+       .|+.+       +|..+|++..+. +.|+ ...+
T Consensus       246 ~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~  324 (530)
T 2ooe_A          246 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLY  324 (530)
T ss_dssp             CCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHH
Confidence              232    36777887654  25578899999888876       79987       999999999863 3454 6788


Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhHcCCccC--hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HH
Q 007998          316 LAALCACNHAGLVDDGVRLFNSMANCGVKPN--MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGA-CQ  390 (582)
Q Consensus       316 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~  390 (582)
                      ..++..+.+.|++++|..+|+++.+.  .|+  ...|..++..+.+.|++++|.++|++. ...| +...|...... +.
T Consensus       325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~  402 (530)
T 2ooe_A          325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  402 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            88888999999999999999999983  454  257888899999999999999999987 3333 23333332222 34


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ..|+.++|..+|+++++..|+++..+..++..+.+.|+.++|+.++++.....
T Consensus       403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence            68999999999999999999999999999999999999999999999998764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.74  E-value=1.8e-15  Score=145.95  Aligned_cols=267  Identities=12%  Similarity=-0.002  Sum_probs=208.0

Q ss_pred             HHhcCCHHHHHHHHhhcCCCCh----hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHH
Q 007998          153 YAKVGEIVSAKKVFDEMGVRDI----ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKE  228 (582)
Q Consensus       153 y~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~  228 (582)
                      ....|++..|+..++.....+.    .....+.++|...|++++|+..++.   . - +|+..++..+...+...++.++
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~-~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-S-APELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-S-CHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-C-ChhHHHHHHHHHHHcCCCcHHH
Confidence            4457888888888877655432    3445667888888888888876654   2 2 6777788888888888888999


Q ss_pred             HHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC
Q 007998          229 GDKIHEYIREERLDM-NVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG  307 (582)
Q Consensus       229 a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  307 (582)
                      |.+.+++++..+..| +...+..+...|.+.|++++|.+.|++   +.+...+..++..|.+.|++++|++.|+++.+. 
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-  159 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-  159 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence            999998888776444 566777788999999999999999998   467889999999999999999999999999886 


Q ss_pred             CCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 007998          308 VKPDDVSY---LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLW  382 (582)
Q Consensus       308 ~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~  382 (582)
                       .|+....   ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.+.+++. ...| +..+|
T Consensus       160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l  237 (291)
T 3mkr_A          160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL  237 (291)
T ss_dssp             -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence             4664321   12334444568999999999999984 2457888999999999999999999999986 4445 78889


Q ss_pred             HHHHHHHHhcCChHH-HHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHH
Q 007998          383 QTLLGACQLYGDVEM-AEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR  434 (582)
Q Consensus       383 ~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  434 (582)
                      ..++..+...|+.++ +.++++++++.+|+++.+.    +...+.+.++++..
T Consensus       238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL  286 (291)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence            999999999999875 6789999999999887543    34455555555544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.74  E-value=7.9e-18  Score=166.39  Aligned_cols=280  Identities=11%  Similarity=0.101  Sum_probs=93.2

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHH
Q 007998          120 RVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKR  199 (582)
Q Consensus       120 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  199 (582)
                      ..|++++|.+.++++      +++.+|..|+.++.+.|++++|.+.|.+.  +|..+|..++..+...|++++|+..++.
T Consensus        15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            334556666655555      12235666666666666666666666442  4455666666666666666666665554


Q ss_pred             HHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHH
Q 007998          200 MKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT  279 (582)
Q Consensus       200 m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~  279 (582)
                      .++.   .+++.+.+.++.+|.+.|+++++.++++       .|+..+|+.+.+.|...|++++|...|..+.      .
T Consensus        87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~------n  150 (449)
T 1b89_A           87 ARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------N  150 (449)
T ss_dssp             -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT------C
T ss_pred             HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh------h
Confidence            4442   3345556666666666666666655553       2455566666666666666666666666553      5


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh
Q 007998          280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR  359 (582)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  359 (582)
                      |..++.++.+.|++++|++.++++      .+..+|..++.+|...|+++.|......     +...+.....++..|.+
T Consensus       151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek  219 (449)
T 1b89_A          151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQD  219 (449)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHH
Confidence            666666666666666666666665      1456666666666666666666433322     12222333346666666


Q ss_pred             cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCC-----CCchhHHHHHHHHHhcCCch
Q 007998          360 AGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYG--DVEMAEIASRKLVEMGS-----NNCGDFVLLSNLYAAYERWD  430 (582)
Q Consensus       360 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~  430 (582)
                      .|++++|..+++.. +.++ ....|.-|.-+|.+.+  +..+.++.|..-+...|     .++..|..+...|...++|+
T Consensus       220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d  299 (449)
T 1b89_A          220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD  299 (449)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence            66666666666543 4333 4555555555555442  33333333332222223     34556666666666667766


Q ss_pred             HHHH
Q 007998          431 DVGR  434 (582)
Q Consensus       431 ~a~~  434 (582)
                      .|..
T Consensus       300 ~A~~  303 (449)
T 1b89_A          300 NAII  303 (449)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=1.9e-15  Score=156.81  Aligned_cols=366  Identities=11%  Similarity=-0.047  Sum_probs=241.2

Q ss_pred             cchhchHHHHHhcCCC-CCHHHHHHHHhcC------------CCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhC----
Q 007998           40 FPVRSKIIEFYALSPL-NELAYAHALFRQI------------NAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG----  102 (582)
Q Consensus        40 ~~~~~~~~~li~~y~~-g~~~~A~~~f~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----  102 (582)
                      ....+.||.|...|.. |+.++|.+.|++.            .....++|+.+...|...|++++|...|++..+.    
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~  127 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF  127 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence            3333446888888888 9999999998763            1235678999999999999999999999887642    


Q ss_pred             -C-CCC-ChhHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCchHHHHHHHHH---HHhcCCHHHHHHHHhhc---CC
Q 007998          103 -S-HRS-DALTCSFALKACAR--VLALFETLQIHSHVLRHGFLADALLGTTLLDV---YAKVGEIVSAKKVFDEM---GV  171 (582)
Q Consensus       103 -g-~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~~~A~~~f~~m---~~  171 (582)
                       + ..+ ...++.....++..  .+++++|++.|+.+++..+ .++..+..+..+   +...++.++|.+.|++.   ..
T Consensus       128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p  206 (472)
T 4g1t_A          128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP  206 (472)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred             ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence             1 112 23455555555544  3578999999999998863 355556555555   44567778888887764   34


Q ss_pred             CChhHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhH
Q 007998          172 RDIASWNALIAGLAQ----GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV  247 (582)
Q Consensus       172 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~  247 (582)
                      .+..++..+...+..    .|++++|.+.+++.....  +.+..++..+...+...|++++|...+.++.+..+. +..+
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~  283 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL  283 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence            466677766655544    467889999999988876  677889999999999999999999999999987533 5677


Q ss_pred             HHHHHHHHHhc-------------------CCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 007998          248 CNAVIDMYAKC-------------------GLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA  306 (582)
Q Consensus       248 ~~~li~~y~~~-------------------g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  306 (582)
                      +..+...|...                   +..+.|...|++..  .+.+..+|..+...|...|++++|+..|++..+.
T Consensus       284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~  363 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK  363 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence            77777766532                   23566777776543  2556778999999999999999999999999886


Q ss_pred             CCCCCHH--HHHHHHH-HHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 007998          307 GVKPDDV--SYLAALC-ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVL  381 (582)
Q Consensus       307 g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~  381 (582)
                      ...|...  .+..+.. ...+.|+.++|...|++..+  +.|+......         ....+.++++.. ...| +..+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~  432 (472)
T 4g1t_A          364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQKIAKMRLSKNGADSEA  432 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTH
T ss_pred             CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHH
Confidence            4433321  2222322 34578999999999999987  3354332221         223334444432 2233 6778


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998          382 WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS  420 (582)
Q Consensus       382 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  420 (582)
                      |..|...+...|++++|++.|+++++++|.+|.+...++
T Consensus       433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             HHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence            999999999999999999999999999998877665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.72  E-value=2.1e-15  Score=147.85  Aligned_cols=255  Identities=11%  Similarity=-0.024  Sum_probs=138.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCC
Q 007998          113 FALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNL  189 (582)
Q Consensus       113 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~  189 (582)
                      .+...+...|++++|.++++.+++.. +.+...+..+...|.+.|++++|.+.|++..   ..+..+|..+...|...|+
T Consensus        26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~  104 (327)
T 3cv0_A           26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN  104 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence            33333444444444444444444432 1233344444444444444444444444432   2234455555555555555


Q ss_pred             hhHHHHHHHHHHHcCCCCCCHHHHHHH--------------HH-HHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          190 ASEAVDLFKRMKMEGVFKPNEVTVLGA--------------LA-ACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM  254 (582)
Q Consensus       190 ~~~A~~~~~~m~~~g~~~pd~~t~~~l--------------l~-a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  254 (582)
                      +++|++.|+++....  +.+...+..+              .. .+...|++++|..+++++.+... .+...+..+...
T Consensus       105 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~  181 (327)
T 3cv0_A          105 ANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVL  181 (327)
T ss_dssp             HHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence            566665555555442  1122222211              12 25566677777777777766542 256666777777


Q ss_pred             HHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 007998          255 YAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV  332 (582)
Q Consensus       255 y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  332 (582)
                      |.+.|++++|.+.|++..  .+.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.
T Consensus       182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~  260 (327)
T 3cv0_A          182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAA  260 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence            777777777777776543  24456667777777777777777777777766642 223456666666777777777777


Q ss_pred             HHHHHHhHcCCcc-----------ChhhHHhhhhHHhhcCCHHHHHHHHHh
Q 007998          333 RLFNSMANCGVKP-----------NMKHYGSVVDLLGRAGRLQEACDIVKS  372 (582)
Q Consensus       333 ~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~  372 (582)
                      ..++++.+.....           +...+..+..+|.+.|++++|..++++
T Consensus       261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            7777666521111           244555555556666666666555543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.72  E-value=7.7e-16  Score=148.56  Aligned_cols=249  Identities=11%  Similarity=0.014  Sum_probs=203.9

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 007998          181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNE--VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC  258 (582)
Q Consensus       181 i~~~~~~g~~~~A~~~~~~m~~~g~~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~  258 (582)
                      |+-....|+++.|+..+++....   .|+.  .....+..++...|+++.|...++.    .-+|+...+..+...|.+.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~---~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS---SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC---CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence            34456789999999999876543   4443  3556778899999999999876644    2456778888999999999


Q ss_pred             CCHHHHHHHHhccc-C--CC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007998          259 GLLDKAFEVFDNIK-C--RK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRL  334 (582)
Q Consensus       259 g~~~~A~~~~~~~~-~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~  334 (582)
                      |+.++|.+.++++. .  .| +...+..+...|.+.|++++|++.+++      +.+...+..+...+.+.|++++|.+.
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999863 1  24 566778888999999999999999987      45677888899999999999999999


Q ss_pred             HHHHhHcCCccChhh---HHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998          335 FNSMANCGVKPNMKH---YGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMG  409 (582)
Q Consensus       335 ~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  409 (582)
                      |+++.+..  |+...   ...++..+...|++++|..+|+++  ..+.+...|+.+..++...|++++|+..++++++.+
T Consensus       153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999843  54321   123445555669999999999987  223488999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHhcCCchH-HHHHHHHHHhCCC
Q 007998          410 SNNCGDFVLLSNLYAAYERWDD-VGRVRKAMKNRDV  444 (582)
Q Consensus       410 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~  444 (582)
                      |+++.++..++.++...|++++ +.++++++.+...
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P  266 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR  266 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence            9999999999999999999986 5788888876543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.71  E-value=6.9e-14  Score=153.61  Aligned_cols=368  Identities=13%  Similarity=0.052  Sum_probs=283.3

Q ss_pred             hhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCHHHHHHHHhcCC-CC-----ChhHHHHHHHHHHcCCCchH
Q 007998           19 HIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NELAYAHALFRQIN-AP-----STNDFNAVLRGLAHSSKPTN   91 (582)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~-~~-----~~~~~~~li~~~~~~g~~~~   91 (582)
                      -..-|++..+.+.+.++...+|.-.   ...+..|.. |.+.+|..+++++. .|     +...-|.++....+. +..+
T Consensus       964 n~~RR~Lidqv~a~aL~e~~~PeeV---s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~R 1039 (1630)
T 1xi4_A          964 NPYRRPLIDQVVQTALSETQDPEEV---SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTR 1039 (1630)
T ss_pred             cHHHHHHHHHHHHhhcccccCHHHh---HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Chhh
Confidence            4566777777777766543224433   477788888 99999999998875 22     234456677666665 5566


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 007998           92 AVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV  171 (582)
Q Consensus        92 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~  171 (582)
                      ..+...+...       ....-+...|...|.+++|.++|++..     ......+.+   +-..+++++|.++.++.. 
T Consensus      1040 v~eyI~kLd~-------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn- 1103 (1630)
T 1xi4_A         1040 VMEYINRLDN-------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN- 1103 (1630)
T ss_pred             HHHHHHHhhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC-
Confidence            6666665532       223446777888999999999998852     122222333   227889999999998774 


Q ss_pred             CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998          172 RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAV  251 (582)
Q Consensus       172 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  251 (582)
                       +..+|..+..++...|++++|++.|.+.       .|...|..++.+|.+.|+++++.+++....+..  ++..+.+.+
T Consensus      1104 -~p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A         1104 -EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred             -CHHHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence             4678999999999999999999999553       467788999999999999999999999887764  344445569


Q ss_pred             HHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 007998          252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG  331 (582)
Q Consensus       252 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a  331 (582)
                      +.+|++.+++++.....   . .++...|..+...|...|++++|..+|...         ..|..+..++.+.|++++|
T Consensus      1174 afaYAKl~rleele~fI---~-~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A         1174 IFALAKTNRLAELEEFI---N-GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred             HHHHHhhcCHHHHHHHH---h-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence            99999999998644443   4 667778888999999999999999999984         3789999999999999999


Q ss_pred             HHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998          332 VRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN  411 (582)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  411 (582)
                      .+.+++.      .+..+|..+..++...|++..|......+  ..++..+..++..|...|.+++|+.+++..+.++|.
T Consensus      1241 IEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera 1312 (1630)
T 1xi4_A         1241 VDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERA 1312 (1630)
T ss_pred             HHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh
Confidence            9999877      34578888888899999999999887754  345666779999999999999999999999999998


Q ss_pred             CchhHHHHHHHHHhc--CCchHHHHHHH
Q 007998          412 NCGDFVLLSNLYAAY--ERWDDVGRVRK  437 (582)
Q Consensus       412 ~~~~~~~l~~~~~~~--g~~~~a~~~~~  437 (582)
                      ....|..|+.+|++.  ++..++.+.|.
T Consensus      1313 H~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1313 HMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred             HhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            888998888888765  45555555554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.70  E-value=6.5e-14  Score=153.78  Aligned_cols=377  Identities=9%  Similarity=0.062  Sum_probs=285.6

Q ss_pred             hHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC---CCHHHHHHHHhcCCCCChhHHHHHH
Q 007998            4 LNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL---NELAYAHALFRQINAPSTNDFNAVL   80 (582)
Q Consensus         4 ~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~---g~~~~A~~~f~~~~~~~~~~~~~li   80 (582)
                      .+...+++...+  .+..+.++.+.++..+-....++.+.   |.|+..-.+   ++..+...-++.   -+   ...+.
T Consensus       988 Vs~~vKaf~~ag--lp~EaieLLEKivl~~s~fs~n~~Lq---nlLi~tAIkaD~~Rv~eyI~kLd~---~d---~~eIA 1056 (1630)
T 1xi4_A          988 VSVTVKAFMTAD--LPNELIELLEKIVLDNSVFSEHRNLQ---NLLILTAIKADRTRVMEYINRLDN---YD---APDIA 1056 (1630)
T ss_pred             hHHHHHHHHhCC--CHHHHHHHHHHHHcCCCcccccHHHH---HHHHHHHHHhChhhHHHHHHHhhh---cc---HHHHH
Confidence            455667777633  58889999999884322111125666   566655544   555555544442   22   45577


Q ss_pred             HHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 007998           81 RGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV  160 (582)
Q Consensus        81 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  160 (582)
                      ..+...|.+++|..+|++..    . .....+.++.   ..+++++|.++.+++      .++.+|..+..++.+.|+++
T Consensus      1057 ~Iai~lglyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A         1057 NIAISNELFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence            88889999999999999962    1 2222333333   668899999988765      35788999999999999999


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998          161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER  240 (582)
Q Consensus       161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~  240 (582)
                      +|.+.|.+.  .|...|..++..+.+.|++++|++.|...++..   +++...+.++.+|++.+++++...+.    +  
T Consensus      1123 EAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A         1123 EAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred             HHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence            999999774  678889999999999999999999999877653   33333445889999999888644442    2  


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998          241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC  320 (582)
Q Consensus       241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (582)
                       .++...+..+.+.|...|++++|..+|....      .|..+...|.+.|++++|++.+++.      .+..+|..+-.
T Consensus      1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A         1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence             3466677789999999999999999999864      8999999999999999999999986      35689999999


Q ss_pred             HHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChH
Q 007998          321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY--GDVE  396 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~  396 (582)
                      +|...|++..|......     +..+...+..++..|.+.|.+++|..+++.. +.+| ....|.-|...+.+.  ++..
T Consensus      1259 acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A         1259 ACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred             HHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence            99999999998886653     3455667778999999999999999999875 5555 456776666666654  3556


Q ss_pred             HHHHHHHHHHHcCC-----CCchhHHHHHHHHHhcCCchHHHH
Q 007998          397 MAEIASRKLVEMGS-----NNCGDFVLLSNLYAAYERWDDVGR  434 (582)
Q Consensus       397 ~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a~~  434 (582)
                      ++.+.|..-....|     .+...|.-+...|.+.|+|+.|..
T Consensus      1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            66666665555444     466788899999999999999984

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.70  E-value=3e-17  Score=174.57  Aligned_cols=129  Identities=19%  Similarity=0.149  Sum_probs=104.0

Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHH
Q 007998          241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK------CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVS  314 (582)
Q Consensus       241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t  314 (582)
                      ...-..+||+||++|+++|++++|.++|++|.      ..||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT  202 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS  202 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence            33346688888888888888888888887653      468888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCC-HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHH
Q 007998          315 YLAALCACNHAGL-VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDI  369 (582)
Q Consensus       315 ~~~ll~a~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  369 (582)
                      |+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++....+.+-++...++
T Consensus       203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv  258 (1134)
T 3spa_A          203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV  258 (1134)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence            8888888888887 477888888888888888888888888877766544444444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.66  E-value=9.7e-17  Score=170.75  Aligned_cols=152  Identities=14%  Similarity=0.158  Sum_probs=126.9

Q ss_pred             CCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC-------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH
Q 007998          139 FLADALLGTTLLDVYAKVGEIVSAKKVFDEMG-------VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV  211 (582)
Q Consensus       139 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~  211 (582)
                      ...-..+||+||++|+++|++++|.++|++|.       .||++|||+||.+|++.|++++|.++|++|.+.|+ .||.+
T Consensus       123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-~PDvv  201 (1134)
T 3spa_A          123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-TPDLL  201 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHH
T ss_pred             HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcHH
Confidence            34456789999999999999999999997763       68999999999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHhccCCc-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCC----CCHHHHHHHHHH
Q 007998          212 TVLGALAACGHLGAW-KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR----KSLVTWNTMVMA  286 (582)
Q Consensus       212 t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~~li~~  286 (582)
                      ||+++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+..+    |.+.+-+.|...
T Consensus       202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl  281 (1134)
T 3spa_A          202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV  281 (1134)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence            999999999999985 789999999999999999999999998888776666666665555411    123333445555


Q ss_pred             HHhCC
Q 007998          287 FAVHG  291 (582)
Q Consensus       287 ~~~~g  291 (582)
                      |.+.+
T Consensus       282 ~s~d~  286 (1134)
T 3spa_A          282 YAKDG  286 (1134)
T ss_dssp             HCCCS
T ss_pred             HccCC
Confidence            66544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=3.3e-14  Score=134.11  Aligned_cols=220  Identities=9%  Similarity=0.004  Sum_probs=165.2

Q ss_pred             HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-----CCCC----HHHHH
Q 007998          211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-----CRKS----LVTWN  281 (582)
Q Consensus       211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~----~~~~~  281 (582)
                      ..+..+...+...|++++|..+++++++..  .+...+..+...|...|++++|.+.|++..     ..++    ..+|.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            455556666666667777777776666665  456667777777777777777777776543     1112    46777


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC
Q 007998          282 TMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG  361 (582)
Q Consensus       282 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  361 (582)
                      .+...|...|++++|+..|++....  .|+..       .+...|++++|...++.+.... +.+...+..+...|...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence            7888888888888888888888774  45532       3455677888888888887732 234567777888888889


Q ss_pred             CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998          362 RLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM  439 (582)
Q Consensus       362 ~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  439 (582)
                      ++++|.+.+++. ...| +..+|..+...+...|++++|...++++++.+|+++..+..++.+|...|++++|...+++.
T Consensus       154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999998888876 2233 67888889999999999999999999999999999999999999999999999999999887


Q ss_pred             HhC
Q 007998          440 KNR  442 (582)
Q Consensus       440 ~~~  442 (582)
                      .+.
T Consensus       234 ~~~  236 (258)
T 3uq3_A          234 RTK  236 (258)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.62  E-value=3.6e-14  Score=130.60  Aligned_cols=195  Identities=11%  Similarity=-0.003  Sum_probs=146.4

Q ss_pred             CCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHH
Q 007998          242 DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAA  318 (582)
Q Consensus       242 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l  318 (582)
                      +++...+..+...+.+.|++++|...|++..  .+.+...|..+...+.+.|++++|+..|++..+.  .|+ ...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            3456677777788888888888888887653  2446677888888888888888888888888774  343 4567777


Q ss_pred             HHHHHcC-----------CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 007998          319 LCACNHA-----------GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLL  386 (582)
Q Consensus       319 l~a~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll  386 (582)
                      ..++...           |++++|...|++..+.. +-+...+..+..+|...|++++|++.|++. ....+...|..+.
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la  158 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence            7777777           99999999999988843 234677888888999999999999999876 1116888999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998          387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAM  439 (582)
Q Consensus       387 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  439 (582)
                      ..+...|++++|...++++++.+|+++..+..++.++...|++++|...+++.
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=6.3e-14  Score=132.15  Aligned_cols=234  Identities=11%  Similarity=0.001  Sum_probs=159.9

Q ss_pred             hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC--Cc----hhHH
Q 007998          175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLD--MN----VVVC  248 (582)
Q Consensus       175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~  248 (582)
                      ..|..+...+...|++++|+..|++..+..   .+..++..+..++...|++++|...+..+++....  ++    ..++
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            345566666666666666666666666553   44556666666666666666666666666553211  11    4666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCC
Q 007998          249 NAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAG  326 (582)
Q Consensus       249 ~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g  326 (582)
                      ..+...|.+.|++++|...|++.. ..|+.       ..+...|++++|+..++++...  .|+ ...+..+...+...|
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhc
Confidence            677777777777777777777654 23332       3355566777888888777763  343 346667777777888


Q ss_pred             CHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007998          327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRK  404 (582)
Q Consensus       327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~  404 (582)
                      ++++|...++++.+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...+++
T Consensus       154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            8888888888887732 235667777888888888888888888766 3334 578888889999999999999999999


Q ss_pred             HHHcC------CCCchhHHHHHH
Q 007998          405 LVEMG------SNNCGDFVLLSN  421 (582)
Q Consensus       405 ~~~~~------p~~~~~~~~l~~  421 (582)
                      +++..      |.+...+..+..
T Consensus       233 a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          233 ARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHhChhhcCCCchHHHHHHHHH
Confidence            99988      766655555543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.60  E-value=8e-14  Score=132.86  Aligned_cols=249  Identities=9%  Similarity=-0.029  Sum_probs=131.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC--HHHHHHHHHHH
Q 007998          146 GTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN--EVTVLGALAAC  220 (582)
Q Consensus       146 ~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd--~~t~~~ll~a~  220 (582)
                      +......|.+.|++++|...|++..   ..+...|..+...|...|++++|++.|++..+.+. .|+  ..+|..+...+
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN-ATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-TTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHH
Confidence            3444555666666666666666542   12344566666666666666666666666655321 111  22355555556


Q ss_pred             hccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHH
Q 007998          221 GHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALE  298 (582)
Q Consensus       221 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~  298 (582)
                      ...|++++|...++.+.+... .+..++..+...|.+.|++++|.+.|++..  .+.+...|..+...+...+++++|+.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666555432 234555555556666666666666665543  12234444444412222335555555


Q ss_pred             HHHHHHhcCCCCC-HHHHHHHHHHHHcCCC---HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCC
Q 007998          299 LFEQMGRAGVKPD-DVSYLAALCACNHAGL---VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVS  374 (582)
Q Consensus       299 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  374 (582)
                      .|+++.+.  .|+ ...+..+..++...|+   +++|...++++.+                            +....+
T Consensus       164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----------------------------~~~~~~  213 (272)
T 3u4t_A          164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE----------------------------VCAPGG  213 (272)
T ss_dssp             HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH----------------------------HHGGGG
T ss_pred             HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH----------------------------HHhccc
Confidence            55555543  222 2333333333333333   3333333333332                            111111


Q ss_pred             CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 007998          375 MG---TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY  426 (582)
Q Consensus       375 ~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  426 (582)
                      ..   ....+|..+...|...|++++|...++++++++|+++.+...+.......
T Consensus       214 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          214 AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred             ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence            00   01246777888889999999999999999999999988777666555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.60  E-value=6.1e-14  Score=133.77  Aligned_cols=243  Identities=11%  Similarity=-0.031  Sum_probs=182.8

Q ss_pred             hCCChhHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007998          186 QGNLASEAVDLFKRMKMEGVF--KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK  263 (582)
Q Consensus       186 ~~g~~~~A~~~~~~m~~~g~~--~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~  263 (582)
                      ..|++++|++.|+++.+....  +.+..++..+..++...|++++|...++++++... .+..++..+...|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence            457788888888888775310  11355677778888888888888888888887753 367788888888888889999


Q ss_pred             HHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHc
Q 007998          264 AFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC  341 (582)
Q Consensus       264 A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  341 (582)
                      |.+.|++..  .+.+..+|..+...|...|++++|+..|+++.+.  .|+.......+..+...|++++|...++.....
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            888888764  2456788888999999999999999999998874  455554444555566779999999999888773


Q ss_pred             CCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998          342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD-----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       342 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  415 (582)
                      . +++...+ .++..+...++.++|.+.+++. ...|+     ..+|..+...+...|++++|...++++++.+|++...
T Consensus       174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  251 (275)
T 1xnf_A          174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  251 (275)
T ss_dssp             S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence            2 2333334 3677788888889999998876 33332     5788899999999999999999999999999977544


Q ss_pred             HHHHHHHHHhcCCchHHHHHH
Q 007998          416 FVLLSNLYAAYERWDDVGRVR  436 (582)
Q Consensus       416 ~~~l~~~~~~~g~~~~a~~~~  436 (582)
                      +   ..++...|++++|.+.+
T Consensus       252 ~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          252 H---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             H---HHHHHHHHHHHHC----
T ss_pred             H---HHHHHHHHHHHhhHHHH
Confidence            4   66777888888887765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=2.2e-13  Score=135.93  Aligned_cols=247  Identities=12%  Similarity=0.026  Sum_probs=193.2

Q ss_pred             hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC-cHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998          174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA-WKEGDKIHEYIREERLDMNVVVCNAVI  252 (582)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li  252 (582)
                      ...|+.+...+.+.|++++|++.|++.+...  +-+...|..+..++...|+ +++|...++++++.... +...|+.+.
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g  173 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence            4567788888888888888888888888775  5567788888888888886 88888888888887543 677888888


Q ss_pred             HHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-CCCHH
Q 007998          253 DMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH-AGLVD  329 (582)
Q Consensus       253 ~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~g~~~  329 (582)
                      .+|.+.|++++|+..|+++.  .+.+...|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..+
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            88888888888888888664  35677888888888888899999999999888752 2245678888888887 55546


Q ss_pred             HH-----HHHHHHHhHcCCccChhhHHhhhhHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--------
Q 007998          330 DG-----VRLFNSMANCGVKPNMKHYGSVVDLLGRAG--RLQEACDIVKSVSMGT-DMVLWQTLLGACQLYG--------  393 (582)
Q Consensus       330 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g--------  393 (582)
                      +|     ...|++.++.. +-+...|..+..+|...|  ++++|.+.++++...| +...+..+...+...|        
T Consensus       253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence            66     47788887732 234567777888888877  6889998888774445 5778888888887764        


Q ss_pred             -ChHHHHHHHHHH-HHcCCCCchhHHHHHHHHHh
Q 007998          394 -DVEMAEIASRKL-VEMGSNNCGDFVLLSNLYAA  425 (582)
Q Consensus       394 -~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~  425 (582)
                       .+++|.++++++ .+.+|.....|..++..+..
T Consensus       332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence             258999999999 89999888888888776654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.57  E-value=2.9e-13  Score=124.51  Aligned_cols=195  Identities=13%  Similarity=0.033  Sum_probs=111.7

Q ss_pred             ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998          173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI  252 (582)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  252 (582)
                      +...|..+...+.+.|++++|+..|++..+..  +.+...+..+..++.+.|++++|...+++.++... .+...+..+.
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg   80 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS   80 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence            34455555666666666666666666665553  44555666666666666666666666666665542 2455555566


Q ss_pred             HHHHhc-----------CCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007998          253 DMYAKC-----------GLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL  319 (582)
Q Consensus       253 ~~y~~~-----------g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  319 (582)
                      .+|.+.           |++++|...|++..  .+.+...|..+...|...|++++|+..|++..+..  .+...+..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la  158 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence            666665           67777777766543  23455666667777777777777777777776654  5556666666


Q ss_pred             HHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998          320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV  373 (582)
Q Consensus       320 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  373 (582)
                      .++...|++++|...|+++.+.. +.+...+..+..++.+.|++++|.+.+++.
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            67777777777777777766632 224455566666666677777776666554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.56  E-value=1.3e-12  Score=122.79  Aligned_cols=207  Identities=9%  Similarity=-0.051  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998          174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID  253 (582)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  253 (582)
                      ...|..+...+...|++++|++.|+++.+..  +.+...+..+...+...|++++|.+.++++.+..             
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------  101 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------  101 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence            3455555566666666666666666655543  3344444444444444445544444444444432             


Q ss_pred             HHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHH
Q 007998          254 MYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGV  332 (582)
Q Consensus       254 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~  332 (582)
                                          +.+...|..+...|...|++++|++.|+++...+..|+. ..+..+...+...|++++|.
T Consensus       102 --------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  161 (252)
T 2ho1_A          102 --------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK  161 (252)
T ss_dssp             --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             --------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence                                223444444555555555555555555555442223332 34555555566666666666


Q ss_pred             HHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998          333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS  410 (582)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  410 (582)
                      ..++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+...+..+...+...|++++|.+.++++.+..|
T Consensus       162 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p  240 (252)
T 2ho1_A          162 EYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP  240 (252)
T ss_dssp             HHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence            6666665522 223455566666666677777777666654 222 3566677777777778888888888888888877


Q ss_pred             CCchhH
Q 007998          411 NNCGDF  416 (582)
Q Consensus       411 ~~~~~~  416 (582)
                      +++...
T Consensus       241 ~~~~~~  246 (252)
T 2ho1_A          241 GSLEYQ  246 (252)
T ss_dssp             TSHHHH
T ss_pred             CCHHHH
Confidence            765443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.55  E-value=3e-12  Score=122.15  Aligned_cols=224  Identities=10%  Similarity=-0.031  Sum_probs=119.1

Q ss_pred             ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----cCCcHHHHHHHHHHHHcCCCCchhHH
Q 007998          173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH----LGAWKEGDKIHEYIREERLDMNVVVC  248 (582)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  248 (582)
                      +..++..+...|...|++++|++.|++..+.+    +..++..+...+..    .+++++|...+++..+.+   +...+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            44556666666666666666666666665532    23445555555555    666666666666665554   44555


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHhcccCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998          249 NAVIDMYAK----CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV----HGDGPRALELFEQMGRAGVKPDDVSYLAALC  320 (582)
Q Consensus       249 ~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (582)
                      ..+..+|..    .+++++|.+.|++.....+..++..+...|..    .+++++|+..|++..+.+   +...+..+..
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  154 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence            555555555    55566666555544312344555555555555    555555555555555433   2333444444


Q ss_pred             HHHc----CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 007998          321 ACNH----AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL----Y  392 (582)
Q Consensus       321 a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~  392 (582)
                      .+..    .+++++|...|++..+.                                   .+...+..+...+..    .
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~~~~a~~~lg~~~~~g~~~~  199 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDL-----------------------------------KDSPGCFNAGNMYHHGEGAT  199 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT-----------------------------------TCHHHHHHHHHHHHHTCSSC
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHC-----------------------------------CCHHHHHHHHHHHHcCCCCC
Confidence            4444    45555555555554442                                   233444444444544    5


Q ss_pred             CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 007998          393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA----YERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~  443 (582)
                      +++++|...++++.+.+|  +..+..++.+|..    .+++++|.+.+++..+.+
T Consensus       200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            555555555555555543  3445555555555    555555555555554433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.54  E-value=8.7e-13  Score=124.08  Aligned_cols=199  Identities=9%  Similarity=-0.038  Sum_probs=173.1

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007998          245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC  322 (582)
Q Consensus       245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~  322 (582)
                      ...+..+...|...|++++|.+.|+++.  .+.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            5677888889999999999999998764  35578889999999999999999999999998753 33567888889999


Q ss_pred             HcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007998          323 NHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       323 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~  399 (582)
                      ...|++++|..+++++.+.+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999998733344 4577888999999999999999999876 3334 6888999999999999999999


Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ..++++++..|.++..+..++.+|...|++++|.+.++++.+...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p  240 (252)
T 2ho1_A          196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP  240 (252)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999987543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.54  E-value=3.3e-12  Score=121.88  Aligned_cols=226  Identities=12%  Similarity=-0.030  Sum_probs=184.0

Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCCHHHHHHH
Q 007998          142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVR-DIASWNALIAGLAQ----GNLASEAVDLFKRMKMEGVFKPNEVTVLGA  216 (582)
Q Consensus       142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~pd~~t~~~l  216 (582)
                      +...+..+...|.+.|++++|...|++..++ +..++..+...|..    .+++++|++.|++..+.+    +...+..+
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l   80 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLL   80 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHHH
Confidence            5677888999999999999999999987654 67789999999999    999999999999998865    67788888


Q ss_pred             HHHHhc----cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcccCCCCHHHHHHHHHHHH
Q 007998          217 LAACGH----LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK----CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFA  288 (582)
Q Consensus       217 l~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~  288 (582)
                      ...+..    .+++++|...+++..+.+   +...+..+..+|.+    .+++++|.+.|++.....+...+..+...|.
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~  157 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            899988    999999999999999875   77888999999999    9999999999997652447788889999999


Q ss_pred             h----CCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc
Q 007998          289 V----HGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH----AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA  360 (582)
Q Consensus       289 ~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  360 (582)
                      .    .+++++|+..|++..+.+   +...+..+...+..    .+++++|...|++..+.+                  
T Consensus       158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------  216 (273)
T 1ouv_A          158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE------------------  216 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT------------------
T ss_pred             cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC------------------
Confidence            8    999999999999998864   45666667777777    777777777777776532                  


Q ss_pred             CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCC
Q 007998          361 GRLQEACDIVKSVSMGTDMVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       361 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~  412 (582)
                                       +...+..+...+..    .+++++|.+.++++.+.+|++
T Consensus       217 -----------------~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          217 -----------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             -----------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             -----------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence                             12334444555555    667777777777777777643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.54  E-value=2.9e-13  Score=126.37  Aligned_cols=173  Identities=12%  Similarity=0.045  Sum_probs=90.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 007998          248 CNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA  325 (582)
Q Consensus       248 ~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  325 (582)
                      +..+...|.+.|++++|.+.|++..  .+.+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...
T Consensus        60 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~  138 (243)
T 2q7f_A           60 YINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKL  138 (243)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence            3333334444444444444443322  12234444444445555555555555555544431 22334444455555555


Q ss_pred             CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007998          326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASR  403 (582)
Q Consensus       326 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~  403 (582)
                      |++++|..+++++.+.. +.+...+..+...|.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++
T Consensus       139 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  217 (243)
T 2q7f_A          139 EQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD  217 (243)
T ss_dssp             SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            55555555555555421 123445555556666666666666666554 112 246667777777777777777777777


Q ss_pred             HHHHcCCCCchhHHHHHHH
Q 007998          404 KLVEMGSNNCGDFVLLSNL  422 (582)
Q Consensus       404 ~~~~~~p~~~~~~~~l~~~  422 (582)
                      ++++.+|+++..+..+..+
T Consensus       218 ~~~~~~p~~~~~~~~~~~l  236 (243)
T 2q7f_A          218 KAIDIQPDHMLALHAKKLL  236 (243)
T ss_dssp             HHHHHCTTCHHHHHHHTC-
T ss_pred             HHHccCcchHHHHHHHHHH
Confidence            7777777776666555443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.54  E-value=1e-12  Score=134.99  Aligned_cols=299  Identities=12%  Similarity=0.046  Sum_probs=161.4

Q ss_pred             cChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CCH---HHHHHHHhcCCCCChhHHHHHHHHHHcCC-----
Q 007998           17 VSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NEL---AYAHALFRQINAPSTNDFNAVLRGLAHSS-----   87 (582)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----   87 (582)
                      ++.+.|.+.+..+.+.|-     +...   ..|..+|.. |+.   ++|...|++..+.+...+..|...+...+     
T Consensus        17 g~~~~A~~~~~~aa~~g~-----~~A~---~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~   88 (452)
T 3e4b_A           17 GDTVTAQQNYQQLAELGY-----SEAQ---VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA   88 (452)
T ss_dssp             HHHHHHHHHHHHHHHHTC-----CTGG---GTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred             CCHHHHHHHHHHHHHCCC-----HHHH---HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence            357778888888777652     2222   345556655 666   78888888776556667777777555554     


Q ss_pred             CchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCCchHHHHHHHHHHHhcC----CHH
Q 007998           88 KPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE---TLQIHSHVLRHGFLADALLGTTLLDVYAKVG----EIV  160 (582)
Q Consensus        88 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~~  160 (582)
                      ++++|+..|++..+.|..   ..+..+...+...+..+.   +.+.+......|   ++.....|..+|...+    +.+
T Consensus        89 ~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~  162 (452)
T 3e4b_A           89 EHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD  162 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred             CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence            567888888888776532   255555666655443332   344444444444   3445566677777766    444


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHhCC---ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc----CCcHHHHHHH
Q 007998          161 SAKKVFDEMGVRDIASWNALIAGLAQGN---LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL----GAWKEGDKIH  233 (582)
Q Consensus       161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~----~~~~~a~~~~  233 (582)
                      .+..+++.....+..++..|...|.+.|   ++++|++.|++..+.|  +++...+..+...|...    ++.++|...|
T Consensus       163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~  240 (452)
T 3e4b_A          163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALL  240 (452)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            5555666666666667777777777777   7778888888777777  56666656666666544    5667777777


Q ss_pred             HHHHHcCCCCchhHHHHHHHH-H--HhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCC-----ChhHHHHHHHHHHh
Q 007998          234 EYIREERLDMNVVVCNAVIDM-Y--AKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHG-----DGPRALELFEQMGR  305 (582)
Q Consensus       234 ~~~~~~~~~~~~~~~~~li~~-y--~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~  305 (582)
                      +... .   -+...+..|..+ |  ...+++++|.+.|++.....+...+..|...|. .|     ++++|+..|++.. 
T Consensus       241 ~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-  314 (452)
T 3e4b_A          241 EKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-  314 (452)
T ss_dssp             HHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred             HHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence            6665 2   244555555555 3  345666666666665442335555555655555 33     5666666666554 


Q ss_pred             cCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhH
Q 007998          306 AGVKPDDVSYLAALCACNH----AGLVDDGVRLFNSMAN  340 (582)
Q Consensus       306 ~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~  340 (582)
                      .|   +......+...|..    ..++++|...|++..+
T Consensus       315 ~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  350 (452)
T 3e4b_A          315 GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR  350 (452)
T ss_dssp             TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred             CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence            22   33334444444433    2255555555555554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.53  E-value=2.7e-12  Score=118.09  Aligned_cols=201  Identities=11%  Similarity=-0.034  Sum_probs=101.0

Q ss_pred             HHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC-C
Q 007998          215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH-G  291 (582)
Q Consensus       215 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~-g  291 (582)
                      .+...+...|++++|...++.+++.. +.+...+..+...|...|++++|.+.|++..  .+.+..+|..+...|... |
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~   91 (225)
T 2vq2_A           13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN   91 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC
Confidence            33333333344444444333333332 1123344444444444444444444444332  123444555555555555 5


Q ss_pred             ChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHH
Q 007998          292 DGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV  370 (582)
Q Consensus       292 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  370 (582)
                      ++++|+..|+++.+.+..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.+
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~  170 (225)
T 2vq2_A           92 RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYF  170 (225)
T ss_dssp             CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence            55555555555554222333 2345555555566666666666666655521 123445555556666666666666666


Q ss_pred             HhC-CCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998          371 KSV-SMG--TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV  417 (582)
Q Consensus       371 ~~~-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  417 (582)
                      +++ ...  .+...|..+...+...|+.+.+...++.+.+..|+++....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  220 (225)
T 2vq2_A          171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT  220 (225)
T ss_dssp             HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence            554 111  24455555555666666677776666666666666654443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.53  E-value=1.6e-12  Score=119.56  Aligned_cols=200  Identities=11%  Similarity=-0.029  Sum_probs=174.0

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998          243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC  320 (582)
Q Consensus       243 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (582)
                      .+...+..+...|...|++++|.+.|++..  .+.+...|..+...|...|++++|+..|+++.+.. +.+..++..+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            356778889999999999999999999764  35578899999999999999999999999998753 335678888999


Q ss_pred             HHHcC-CCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007998          321 ACNHA-GLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVE  396 (582)
Q Consensus       321 a~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~  396 (582)
                      .+... |++++|...++++.+.+..|+ ...+..+...|...|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            99999 999999999999998323343 577888999999999999999999876 3334 6888999999999999999


Q ss_pred             HHHHHHHHHHHcCC-CCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          397 MAEIASRKLVEMGS-NNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       397 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      +|...++++++..| .++..+..+...+...|+.++|..+++.+.+..
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  212 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            99999999999999 999999999999999999999999999887644

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.52  E-value=6.2e-13  Score=136.71  Aligned_cols=344  Identities=10%  Similarity=-0.014  Sum_probs=195.6

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHh
Q 007998           79 VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLAL---FETLQIHSHVLRHGFLADALLGTTLLDVYAK  155 (582)
Q Consensus        79 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~  155 (582)
                      +...+.+.|++++|+++|++..+.|   +...+..+...+...|+.   ++|.+.++...+.    ++..+..|..++..
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence            4556667778888888888877655   223334444445556666   7777777777644    34445556554554


Q ss_pred             cC-----CHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCChhH---HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCc
Q 007998          156 VG-----EIVSAKKVFDEMGVR-DIASWNALIAGLAQGNLASE---AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW  226 (582)
Q Consensus       156 ~g-----~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~  226 (582)
                      .|     +.++|...|++...+ +..++..|...|...+..++   +.+.+.+....|    ++.....+...+...+.+
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~  157 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTY  157 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCG
T ss_pred             CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCc
Confidence            44     667777777766433 44567777777776665433   444444444444    233444555566666654


Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC----CChhHHH
Q 007998          227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG---LLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH----GDGPRAL  297 (582)
Q Consensus       227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~----g~~~~A~  297 (582)
                      +++......+.+.-...+...+..|..+|.+.|   +.++|.+.|++..  ..++...+..+...|...    +++++|+
T Consensus       158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~  237 (452)
T 3e4b_A          158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ  237 (452)
T ss_dssp             GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence            444444333333222233446777777777777   7777777777553  234455556666666544    5777888


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHH-H--HcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC-----CHHHHHHH
Q 007998          298 ELFEQMGRAGVKPDDVSYLAALCA-C--NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG-----RLQEACDI  369 (582)
Q Consensus       298 ~~~~~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~  369 (582)
                      ..|++.. .|   +...+..+... +  ...+++++|...|++..+.|   +...+..|..+|. .|     ++++|.+.
T Consensus       238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~  309 (452)
T 3e4b_A          238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAH  309 (452)
T ss_dssp             HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred             HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence            8887776 33   23344444444 3  45778888888888777654   4455555666665 44     78888888


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHh
Q 007998          370 VKSVSMGTDMVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA----YERWDDVGRVRKAMKN  441 (582)
Q Consensus       370 ~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~  441 (582)
                      |++.- ..+...+..|...|..    ..++++|...|++..+.+  ++.....|+.+|..    ..+.++|...+++..+
T Consensus       310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            87776 4567777777666655    337788888888776644  45677777777764    3467777777777776


Q ss_pred             CCC
Q 007998          442 RDV  444 (582)
Q Consensus       442 ~~~  444 (582)
                      .|.
T Consensus       387 ~g~  389 (452)
T 3e4b_A          387 QDT  389 (452)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            664

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.51  E-value=5.8e-13  Score=124.38  Aligned_cols=199  Identities=12%  Similarity=0.090  Sum_probs=156.8

Q ss_pred             CchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 007998          243 MNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALC  320 (582)
Q Consensus       243 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  320 (582)
                      .....+..+...|.+.|++++|...|++..  .+.+...|..+...|...|++++|+..|+++.+.. +.+...+..+..
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            345677778888999999999999998764  24578889999999999999999999999998753 335678888999


Q ss_pred             HHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007998          321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMA  398 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a  398 (582)
                      .+...|++++|..+++++.+.. +.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999843 346678888999999999999999999886 3233 688899999999999999999


Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          399 EIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ...++++++..|.++..+..++.+|...|++++|...+++..+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999999988754

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.51  E-value=2e-12  Score=123.17  Aligned_cols=239  Identities=13%  Similarity=-0.055  Sum_probs=139.8

Q ss_pred             CCCchHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHH
Q 007998           86 SSKPTNAVLWYRQMLRGSHRS---DALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSA  162 (582)
Q Consensus        86 ~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A  162 (582)
                      .|++++|+..|+++.+.....   +..++..+...+...|++++|.+.++.+++.. +.+..++..+..+|.+.|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            455666666666666542211   23455566666666677777777777666654 23556666677777777777777


Q ss_pred             HHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc
Q 007998          163 KKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE  239 (582)
Q Consensus       163 ~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~  239 (582)
                      .+.|++..   ..+..+|..+...|.+.|++++|++.|+++.+..   |+.......+..+...|++++|...+......
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            77776653   2356677777777777788888888887777653   33333333444445567777777777666665


Q ss_pred             CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCC-------HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH
Q 007998          240 RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKS-------LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD  312 (582)
Q Consensus       240 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  312 (582)
                      . +++...+ .++..+...++.++|.+.++... ..+       ...|..+...|...|++++|+..|++....  .|+.
T Consensus       174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~  248 (275)
T 1xnf_A          174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADA-TDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN  248 (275)
T ss_dssp             S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred             C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHh-cccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence            3 2233333 35666666677777777776654 221       345666666666666666666666666653  3422


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHH
Q 007998          313 VSYLAALCACNHAGLVDDGVRLF  335 (582)
Q Consensus       313 ~t~~~ll~a~~~~g~~~~a~~~~  335 (582)
                      .  .....++...|++++|.+.+
T Consensus       249 ~--~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 F--VEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             C--HHHHHHHHHHHHHHHC----
T ss_pred             H--HHHHHHHHHHHHHHhhHHHH
Confidence            1  11122344445555554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.51  E-value=2.5e-13  Score=137.97  Aligned_cols=262  Identities=10%  Similarity=-0.013  Sum_probs=159.0

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHhccCCcHHHHHHHHHHHHc----CC-CCchhHHH
Q 007998          179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE----VTVLGALAACGHLGAWKEGDKIHEYIREE----RL-DMNVVVCN  249 (582)
Q Consensus       179 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~  249 (582)
                      .+...+...|++++|+..|++..+..  +.+.    ..+..+...+...|++++|...+++.++.    +. ......+.
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            34445555555555555555555543  2222    24455555555556666665555555432    10 11234555


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccc-------C-CCCHHHHHHHHHHHHhCCC-----------------hhHHHHHHHHHH
Q 007998          250 AVIDMYAKCGLLDKAFEVFDNIK-------C-RKSLVTWNTMVMAFAVHGD-----------------GPRALELFEQMG  304 (582)
Q Consensus       250 ~li~~y~~~g~~~~A~~~~~~~~-------~-~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~  304 (582)
                      .+...|...|++++|...|++..       . .....+|..+...|...|+                 +++|+..+++..
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  210 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL  210 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            56666666666666666665432       0 1123356666666666666                 666666666654


Q ss_pred             hc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC-
Q 007998          305 RA----GVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV-  373 (582)
Q Consensus       305 ~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-  373 (582)
                      +.    +-.|. ..++..+...+...|++++|...+++..+ ..-.++    ...+..+...|...|++++|.+.+++. 
T Consensus       211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  290 (411)
T 4a1s_A          211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL  290 (411)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            31    11111 23566666677777777777777777765 111111    235666777788888888888777654 


Q ss_pred             ---CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------CchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          374 ---SMGT----DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN------NCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       374 ---~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                         +...    ...++..+...+...|++++|...++++++..+.      ...++..++.+|...|++++|...+++..
T Consensus       291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  370 (411)
T 4a1s_A          291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL  370 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence               1111    2456777888888889999999999888876432      23477888999999999999999988776


Q ss_pred             hC
Q 007998          441 NR  442 (582)
Q Consensus       441 ~~  442 (582)
                      +.
T Consensus       371 ~~  372 (411)
T 4a1s_A          371 QL  372 (411)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.50  E-value=4.6e-12  Score=120.53  Aligned_cols=229  Identities=8%  Similarity=-0.108  Sum_probs=186.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHH
Q 007998          108 ALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGV--RD----IASWNALI  181 (582)
Q Consensus       108 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li  181 (582)
                      ...+......+...|++++|.+.++.+++.. +.+..++..+...|.+.|++++|...|++...  ++    ..+|..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            3456667778889999999999999999875 33566888899999999999999999988743  22    33589999


Q ss_pred             HHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHH-HHHHhcCC
Q 007998          182 AGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVI-DMYAKCGL  260 (582)
Q Consensus       182 ~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~  260 (582)
                      ..|...|++++|++.|++..+..  +.+..++..+...+...|++++|...+++.++.. +.+...+..+. ..|. .++
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~  157 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKE  157 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTC
T ss_pred             HHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHH
Confidence            99999999999999999999876  5677899999999999999999999999988773 34677777787 5554 569


Q ss_pred             HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHHcCCCH
Q 007998          261 LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGD---GPRALELFEQMGRAG-VKPD------DVSYLAALCACNHAGLV  328 (582)
Q Consensus       261 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~t~~~ll~a~~~~g~~  328 (582)
                      +++|.+.|++..  .+.+...|..+...+...|+   +++|+..|++..+.. -.|+      ...|..+...+...|++
T Consensus       158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (272)
T 3u4t_A          158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK  237 (272)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence            999999999765  24567888889999988888   888999999987631 1233      14677777888888999


Q ss_pred             HHHHHHHHHHhHc
Q 007998          329 DDGVRLFNSMANC  341 (582)
Q Consensus       329 ~~a~~~~~~~~~~  341 (582)
                      ++|...|+++.+.
T Consensus       238 ~~A~~~~~~al~~  250 (272)
T 3u4t_A          238 VKADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999888873

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=9e-13  Score=133.22  Aligned_cols=265  Identities=12%  Similarity=0.025  Sum_probs=153.3

Q ss_pred             hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCCcHHHHHHHHHHHHc----CCCC-ch
Q 007998          175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN----EVTVLGALAACGHLGAWKEGDKIHEYIREE----RLDM-NV  245 (582)
Q Consensus       175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~-~~  245 (582)
                      ..+......+...|++++|+..|++..+..  +.+    ...+..+...+...|++++|...++++++.    +..| ..
T Consensus        10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A           10 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            344445555555666666666665555543  223    234445555555566666666655554332    1111 13


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHHHHhCCC--------------------hhHHH
Q 007998          246 VVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMAFAVHGD--------------------GPRAL  297 (582)
Q Consensus       246 ~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~--------------------~~~A~  297 (582)
                      .++..+...|...|++++|...|++..    ..++    ..++..+...|...|+                    +++|+
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            445556666666666666666665442    0011    2355666666666666                    66666


Q ss_pred             HHHHHHHhc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC----hhhHHhhhhHHhhcCCHHHHH
Q 007998          298 ELFEQMGRA----GVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN----MKHYGSVVDLLGRAGRLQEAC  367 (582)
Q Consensus       298 ~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~  367 (582)
                      ..+++....    +-.|. ..++..+...+...|++++|...+++..+ ..-.++    ...+..+...|...|++++|.
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            666655431    11111 23556666667777777777777776665 111111    235666677777777777777


Q ss_pred             HHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhHHHHHHHHHhcCCchHHH
Q 007998          368 DIVKSV----SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN------CGDFVLLSNLYAAYERWDDVG  433 (582)
Q Consensus       368 ~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~  433 (582)
                      +.+++.    +..++    ..++..+...+...|++++|...++++++..+..      ..++..++.+|...|++++|.
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            776654    11111    4566677777788888888888888877764322      456777888888888888888


Q ss_pred             HHHHHHHh
Q 007998          434 RVRKAMKN  441 (582)
Q Consensus       434 ~~~~~m~~  441 (582)
                      ..+++..+
T Consensus       328 ~~~~~al~  335 (406)
T 3sf4_A          328 HFAEKHLE  335 (406)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.49  E-value=9e-13  Score=129.16  Aligned_cols=264  Identities=13%  Similarity=0.026  Sum_probs=176.8

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCCcHHHHHHHHHHHHc----CCCC-chhH
Q 007998          177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN----EVTVLGALAACGHLGAWKEGDKIHEYIREE----RLDM-NVVV  247 (582)
Q Consensus       177 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~  247 (582)
                      +......+...|++++|+..|+++.+..  +.+    ...+..+...+...|++++|...+.+.++.    +..+ ...+
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            3444555666677777777777766653  233    245556666666777777777766665432    1111 2455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHHHHhCCC--------------------hhHHHHH
Q 007998          248 CNAVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMAFAVHGD--------------------GPRALEL  299 (582)
Q Consensus       248 ~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~--------------------~~~A~~~  299 (582)
                      +..+...|...|++++|...|++..    ..++    ..++..+...|...|+                    +++|+..
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            6667777777777777777776543    0122    2366677777777777                    7777777


Q ss_pred             HHHHHhc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC----hhhHHhhhhHHhhcCCHHHHHHH
Q 007998          300 FEQMGRA----GVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN----MKHYGSVVDLLGRAGRLQEACDI  369 (582)
Q Consensus       300 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~  369 (582)
                      +++....    +..|. ...+..+...+...|++++|...+++..+ ..-.++    ...+..+...|...|++++|.+.
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7765431    11121 23566777778888888888888888776 111111    23677778888888999999888


Q ss_pred             HHhC----CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhHHHHHHHHHhcCCchHHHHH
Q 007998          370 VKSV----SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN------CGDFVLLSNLYAAYERWDDVGRV  435 (582)
Q Consensus       370 ~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~  435 (582)
                      +++.    +..++    ..++..+...+...|++++|...++++++..|..      ..++..++.+|...|++++|...
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  325 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  325 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            8765    11112    5577788888999999999999999988865422      44778899999999999999999


Q ss_pred             HHHHHhC
Q 007998          436 RKAMKNR  442 (582)
Q Consensus       436 ~~~m~~~  442 (582)
                      +++..+.
T Consensus       326 ~~~a~~~  332 (338)
T 3ro2_A          326 AEKHLEI  332 (338)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9988754

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.49  E-value=1.3e-12  Score=130.36  Aligned_cols=229  Identities=12%  Similarity=0.055  Sum_probs=195.0

Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhccc--CCCCHHHHHHHHHH
Q 007998          210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL-LDKAFEVFDNIK--CRKSLVTWNTMVMA  286 (582)
Q Consensus       210 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~--~~~~~~~~~~li~~  286 (582)
                      ...|..+..++...|++++|...++++++... .+..+|+.+..+|.+.|+ +++|+..|++..  .+.+...|+.+...
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            45677888888999999999999999999863 368899999999999997 999999999765  35688899999999


Q ss_pred             HHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh-cCCHH
Q 007998          287 FAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR-AGRLQ  364 (582)
Q Consensus       287 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~  364 (582)
                      +...|++++|+..|+++++.  .| +...|..+..++...|++++|...|+++++.. +-+...|+.+..+|.+ .|..+
T Consensus       176 ~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            99999999999999999985  44 55788999999999999999999999999843 3467788889999998 66657


Q ss_pred             HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC--------
Q 007998          365 EA-----CDIVKSV-SMGT-DMVLWQTLLGACQLYG--DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE--------  427 (582)
Q Consensus       365 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------  427 (582)
                      +|     ++.+++. ...| +...|..+...+...|  ++++|.+.++++ +.+|+++..+..++.+|.+.|        
T Consensus       253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence            77     4667665 4455 6889999999998888  689999999998 889999999999999999875        


Q ss_pred             -CchHHHHHHHHH-HhCC
Q 007998          428 -RWDDVGRVRKAM-KNRD  443 (582)
Q Consensus       428 -~~~~a~~~~~~m-~~~~  443 (582)
                       ..++|.++++++ .+.+
T Consensus       332 ~~~~~A~~~~~~l~~~~D  349 (382)
T 2h6f_A          332 DILNKALELCEILAKEKD  349 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence             258999999988 5543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.47  E-value=9.8e-13  Score=132.98  Aligned_cols=297  Identities=11%  Similarity=-0.043  Sum_probs=177.2

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----C----C
Q 007998          106 SDALTCSFALKACARVLALFETLQIHSHVLRHGFLAD---ALLGTTLLDVYAKVGEIVSAKKVFDEMGV-----R----D  173 (582)
Q Consensus       106 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~----~  173 (582)
                      +....+......+...|++++|...++.+++......   ..++..+...|...|++++|...|++...     .    .
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3444556666777788888888888888887743211   24566777777778888877777765421     1    2


Q ss_pred             hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCC--------------------cHHH
Q 007998          174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN----EVTVLGALAACGHLGA--------------------WKEG  229 (582)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd----~~t~~~ll~a~~~~~~--------------------~~~a  229 (582)
                      ..+|..+...|...|++++|+..+.+........++    ..++..+...+...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            345666666777777777777777666543100011    2244444444444554                    3333


Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC-
Q 007998          230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-  307 (582)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-  307 (582)
                      ...+.+..+.                            +...... ....+|..+...|...|++++|+..|++..+.. 
T Consensus       167 ~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (406)
T 3sf4_A          167 VDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  218 (406)
T ss_dssp             HHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            3333332221                            1111100 012345556666666666666666666654320 


Q ss_pred             CCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC----C
Q 007998          308 VKPD----DVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV----S  374 (582)
Q Consensus       308 ~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~  374 (582)
                      -.++    ..++..+...+...|++++|...+++..+ ..-.++    ...+..+...|...|++++|.+.+++.    +
T Consensus       219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  298 (406)
T 3sf4_A          219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  298 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            0111    12556666667777777777777776665 110111    345666777777888888887777654    1


Q ss_pred             CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCchhHHHHHHHHHhcCCch
Q 007998          375 MGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGS------NNCGDFVLLSNLYAAYERWD  430 (582)
Q Consensus       375 ~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~  430 (582)
                      ..++    ..++..+...+...|++++|...++++++..+      ....++..++.+|...|+..
T Consensus       299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            1112    55777888899999999999999999888632      23457778888888888754

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.44  E-value=9.3e-12  Score=110.90  Aligned_cols=165  Identities=13%  Similarity=0.093  Sum_probs=114.6

Q ss_pred             CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhh
Q 007998          276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV  354 (582)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  354 (582)
                      +...|..+...|...|++++|++.|++..+.  .| +...+..+..++.+.|++++|...+....... +.+...+..+.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~   80 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG   80 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence            4455666666666666666666666666653  33 33456666666666777777777666666522 22344555566


Q ss_pred             hHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHH
Q 007998          355 DLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV  432 (582)
Q Consensus       355 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  432 (582)
                      ..+...+++++|.+.+++. ...| +...|..+...+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            6666777777777776654 2233 5677777888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhCC
Q 007998          433 GRVRKAMKNRD  443 (582)
Q Consensus       433 ~~~~~~m~~~~  443 (582)
                      .+.+++..+..
T Consensus       161 ~~~~~~al~~~  171 (184)
T 3vtx_A          161 VKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhCC
Confidence            88888776643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.44  E-value=1.2e-12  Score=135.42  Aligned_cols=211  Identities=9%  Similarity=-0.025  Sum_probs=137.6

Q ss_pred             hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCc-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007998          190 ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAW-KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVF  268 (582)
Q Consensus       190 ~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~  268 (582)
                      ++++++.+.+.....  +.+...+..+..++...|++ ++|...++++++..                            
T Consensus        84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----------------------------  133 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----------------------------  133 (474)
T ss_dssp             HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----------------------------
T ss_pred             HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----------------------------
Confidence            445555555444332  33455555555555555555 55555555555443                            


Q ss_pred             hcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHh
Q 007998          269 DNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA---------GLVDDGVRLFNSMA  339 (582)
Q Consensus       269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~~~  339 (582)
                           +.+...|..+...|...|++++|+..|++..+.  .|+...+..+..++...         |++++|...|+++.
T Consensus       134 -----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al  206 (474)
T 4abn_A          134 -----PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV  206 (474)
T ss_dssp             -----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence                 223445555555555555555555555555542  34445555555555555         66666666666666


Q ss_pred             HcCCccChhhHHhhhhHHhhc--------CCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998          340 NCGVKPNMKHYGSVVDLLGRA--------GRLQEACDIVKSV-SMGT----DMVLWQTLLGACQLYGDVEMAEIASRKLV  406 (582)
Q Consensus       340 ~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  406 (582)
                      +.. +.+...|..+..+|...        |++++|.+.|++. ...|    +...|..+..++...|++++|...|++++
T Consensus       207 ~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  285 (474)
T 4abn_A          207 QMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA  285 (474)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            522 22345566666666666        7777777777765 3334    78889999999999999999999999999


Q ss_pred             HcCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998          407 EMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA  438 (582)
Q Consensus       407 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  438 (582)
                      +++|+++.++..++.++...|++++|.+.+++
T Consensus       286 ~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          286 ALDPAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999876543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.43  E-value=7.4e-11  Score=114.67  Aligned_cols=219  Identities=10%  Similarity=0.032  Sum_probs=160.8

Q ss_pred             hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-------ccCCc-------HHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007998          191 SEAVDLFKRMKMEGVFKPNEVTVLGALAACG-------HLGAW-------KEGDKIHEYIREERLDMNVVVCNAVIDMYA  256 (582)
Q Consensus       191 ~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~  256 (582)
                      ++|+.+|++.+...  +.+...|...+..+.       +.|++       ++|..++++.++.-.+.+...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            67888888887764  566777777777665       34776       788888888887312335668888888888


Q ss_pred             hcCCHHHHHHHHhccc-CCC-CHH-HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HcCCCHHHHH
Q 007998          257 KCGLLDKAFEVFDNIK-CRK-SLV-TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCAC-NHAGLVDDGV  332 (582)
Q Consensus       257 ~~g~~~~A~~~~~~~~-~~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~  332 (582)
                      +.|++++|.++|++.. ..| +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|.
T Consensus       111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            8888999988888764 234 333 78888888888888999999998888753 22334444333322 2368899999


Q ss_pred             HHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998          333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-S---MGT--DMVLWQTLLGACQLYGDVEMAEIASRKLV  406 (582)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  406 (582)
                      .+|++..+.. +.+...|..++..+.+.|++++|..+|++. .   +.|  ....|..++......|+.+.|..++++++
T Consensus       190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9998888732 235677788888888888899888888876 2   344  46788888888888899999999999988


Q ss_pred             HcCCCCc
Q 007998          407 EMGSNNC  413 (582)
Q Consensus       407 ~~~p~~~  413 (582)
                      +..|++.
T Consensus       269 ~~~p~~~  275 (308)
T 2ond_A          269 TAFREEY  275 (308)
T ss_dssp             HHTTTTT
T ss_pred             HHccccc
Confidence            8888654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.41  E-value=5.5e-12  Score=127.92  Aligned_cols=132  Identities=11%  Similarity=0.011  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHhHc-C-Cc---cChh
Q 007998          279 TWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPD----DVSYLAALCACNHAGLVDDGVRLFNSMANC-G-VK---PNMK  348 (582)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~-~-~~---~~~~  348 (582)
                      +|..+...|...|++++|+..|++..+... .++    ..++..+...+...|++++|...+++.... . ..   ....
T Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  304 (411)
T 4a1s_A          225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ  304 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344444444444444444444444433100 001    124444555555555555555555555441 0 00   0134


Q ss_pred             hHHhhhhHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998          349 HYGSVVDLLGRAGRLQEACDIVKSV-------SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS  410 (582)
Q Consensus       349 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  410 (582)
                      .+..+...|...|++++|.+.+++.       +..+ ...++..+...+...|++++|...+++++++.+
T Consensus       305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence            4555666666666666666666544       1111 244677788888888999999999999888765

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.40  E-value=1.4e-11  Score=109.78  Aligned_cols=168  Identities=12%  Similarity=0.043  Sum_probs=135.3

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007998          244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA  321 (582)
Q Consensus       244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  321 (582)
                      +..+|..+...|.+.|++++|.+.|++..  .+.+..+|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            56778888888888888888888888654  25577788888888888899999988888887752 2344566667777


Q ss_pred             HHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007998          322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~  399 (582)
                      +...++++.+...+.+..+.. +.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence            888899999999988888732 345677778888899999999999998876 3344 6888999999999999999999


Q ss_pred             HHHHHHHHcCCCCc
Q 007998          400 IASRKLVEMGSNNC  413 (582)
Q Consensus       400 ~~~~~~~~~~p~~~  413 (582)
                      ..|+++++++|+++
T Consensus       162 ~~~~~al~~~p~~a  175 (184)
T 3vtx_A          162 KYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHTTHHHH
T ss_pred             HHHHHHHhCCccCH
Confidence            99999999998653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.40  E-value=1.7e-11  Score=123.23  Aligned_cols=229  Identities=10%  Similarity=-0.008  Sum_probs=143.6

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCC------CchhHHH
Q 007998          180 LIAGLAQGNLASEAVDLFKRMKMEGVFKP----NEVTVLGALAACGHLGAWKEGDKIHEYIREERLD------MNVVVCN  249 (582)
Q Consensus       180 li~~~~~~g~~~~A~~~~~~m~~~g~~~p----d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~  249 (582)
                      ....+...|++++|++.|++....-...+    ...++..+...+...|++++|...+.+.++.-..      ....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            45556677888888888777765310012    2346667777777777777777777776643111      1134667


Q ss_pred             HHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCC-HHHHH
Q 007998          250 AVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMAFAVHGDGPRALELFEQMGRA----GVKPD-DVSYL  316 (582)
Q Consensus       250 ~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~  316 (582)
                      .+...|...|++++|.+.|++..    ..++    ..++..+...|...|++++|+..|++..+.    +..|+ ..++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            77777888888888887777543    0112    236777777888888888888888777651    22233 35677


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhH-cC---CccChhhHHhhhhHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 007998          317 AALCACNHAGLVDDGVRLFNSMAN-CG---VKPNMKHYGSVVDLLGRAGR---LQEACDIVKSVSMGTD-MVLWQTLLGA  388 (582)
Q Consensus       317 ~ll~a~~~~g~~~~a~~~~~~~~~-~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~ll~~  388 (582)
                      .+...+...|++++|...+++..+ ..   -+.....+..+...|...|+   +++|..++++.+..|+ ...+..+...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  348 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY  348 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            777778888888888888877766 11   11112234556666667776   6777777776644332 3345556666


Q ss_pred             HHhcCChHHHHHHHHHHHHc
Q 007998          389 CQLYGDVEMAEIASRKLVEM  408 (582)
Q Consensus       389 ~~~~g~~~~a~~~~~~~~~~  408 (582)
                      |...|++++|...++++++.
T Consensus       349 y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          349 YHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH
Confidence            66667777777666666654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.39  E-value=9.2e-12  Score=125.20  Aligned_cols=225  Identities=7%  Similarity=-0.026  Sum_probs=172.8

Q ss_pred             HHHHHhccCCcHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC-----HHHHH
Q 007998          216 ALAACGHLGAWKEGDKIHEYIREE----RLDM-NVVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS-----LVTWN  281 (582)
Q Consensus       216 ll~a~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~-----~~~~~  281 (582)
                      ....+...|++++|...+.+..+.    +-++ ...++..+...|...|++++|...|++..    ..++     ..+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            566778899999999999999864    2111 35788899999999999999999988653    1222     35788


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhcCC-CCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHhHc----CC-ccChhhHH
Q 007998          282 TMVMAFAVHGDGPRALELFEQMGRAGV-KPDD----VSYLAALCACNHAGLVDDGVRLFNSMANC----GV-KPNMKHYG  351 (582)
Q Consensus       282 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~  351 (582)
                      .+...|...|++++|+..|++..+... .++.    .++..+...|...|++++|...+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            899999999999999999999875310 1222    47888899999999999999999998871    33 23356788


Q ss_pred             hhhhHHhhcCCHHHHHHHHHhC-CC-----CC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998          352 SVVDLLGRAGRLQEACDIVKSV-SM-----GT-DMVLWQTLLGACQLYGD---VEMAEIASRKLVEMGSNNCGDFVLLSN  421 (582)
Q Consensus       352 ~li~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~  421 (582)
                      .+...|.+.|++++|.+.+++. ..     .| ....+..+...+...|+   +++|...+++. ...|.....+..++.
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~  347 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK  347 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence            8999999999999999998865 11     12 22335667778888888   77777777665 222344567889999


Q ss_pred             HHHhcCCchHHHHHHHHHHh
Q 007998          422 LYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       422 ~~~~~g~~~~a~~~~~~m~~  441 (582)
                      +|...|++++|...+++..+
T Consensus       348 ~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          348 YYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999998764

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.39  E-value=1.3e-11  Score=120.82  Aligned_cols=97  Identities=12%  Similarity=0.008  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCC-CHH
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGT-DMV  380 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~  380 (582)
                      ++..+...+...|++++|...+++..+ ..-.++    ...+..+...|...|++++|.+.+++.       +..+ ...
T Consensus       225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  304 (338)
T 3ro2_A          225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  304 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            344444444455555555555544443 100001    234445555556666666665555543       1001 134


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 007998          381 LWQTLLGACQLYGDVEMAEIASRKLVEMGS  410 (582)
Q Consensus       381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p  410 (582)
                      ++..+...+...|++++|...+++++++.+
T Consensus       305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          305 ACWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            666677777888888888888888877654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.36  E-value=7.7e-10  Score=117.77  Aligned_cols=405  Identities=8%  Similarity=-0.035  Sum_probs=274.2

Q ss_pred             cchhchHHHHHhcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCC---chHHHHHHHHHHhCC-CCCChhHH
Q 007998           40 FPVRSKIIEFYALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSK---PTNAVLWYRQMLRGS-HRSDALTC  111 (582)
Q Consensus        40 ~~~~~~~~~li~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~~~~~  111 (582)
                      |.-...|..+++...+ +.++.|+.+|+++.   +.+...|...+..-.+.++   ++.+..+|++.+... ..|+...|
T Consensus        63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW  142 (679)
T 4e6h_A           63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW  142 (679)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence            3334557899998877 99999999999874   4567789999998888888   999999999998864 13777777


Q ss_pred             HHHHHHHHhcCCh--------HHHHHHHHHHHH-cCC-CCc-hHHHHHHHHHHH---------hcCCHHHHHHHHhhcCC
Q 007998          112 SFALKACARVLAL--------FETLQIHSHVLR-HGF-LAD-ALLGTTLLDVYA---------KVGEIVSAKKVFDEMGV  171 (582)
Q Consensus       112 ~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~---------~~g~~~~A~~~f~~m~~  171 (582)
                      ..-+......++.        +..+++|+.++. .|. .++ ..+|...+....         ..++++.++++|++...
T Consensus       143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~  222 (679)
T 4e6h_A          143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC  222 (679)
T ss_dssp             HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence            7766655554443        345578887765 355 443 467887776544         23457889999988753


Q ss_pred             -C--Ch-hHHH---HHHHHHH----------hCCChhHHHHHHHHHHHc--CCC---C-----------C-----C---H
Q 007998          172 -R--DI-ASWN---ALIAGLA----------QGNLASEAVDLFKRMKME--GVF---K-----------P-----N---E  210 (582)
Q Consensus       172 -~--~~-~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--g~~---~-----------p-----d---~  210 (582)
                       |  +. .+|.   .+.....          ...+++.|...+.++...  ++.   +           |     +   .
T Consensus       223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql  302 (679)
T 4e6h_A          223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL  302 (679)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred             CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence             2  11 2332   2222210          011233444555443211  110   1           1     1   1


Q ss_pred             HHHHHHHHHHhccC-------CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhccc--CCCCHHHH
Q 007998          211 VTVLGALAACGHLG-------AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF-EVFDNIK--CRKSLVTW  280 (582)
Q Consensus       211 ~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~--~~~~~~~~  280 (582)
                      ..|...+.---..+       ..+.+..+|++.+... +.+..+|...+..+.+.|+.++|. ++|++..  ++.+...|
T Consensus       303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lw  381 (679)
T 4e6h_A          303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLA  381 (679)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHH
Confidence            22333333222221       1233556788887763 447788888888888999999996 9998764  45677788


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHhcC---------CCCC------------HHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 007998          281 NTMVMAFAVHGDGPRALELFEQMGRAG---------VKPD------------DVSYLAALCACNHAGLVDDGVRLFNSMA  339 (582)
Q Consensus       281 ~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~ll~a~~~~g~~~~a~~~~~~~~  339 (582)
                      -..+...-+.|++++|.++|+++....         -.|+            ...|...+....+.|..+.|..+|.++.
T Consensus       382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~  461 (679)
T 4e6h_A          382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR  461 (679)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888999999999999999999988631         0142            2357777777778899999999999998


Q ss_pred             HcCCccChhhHHhhhhHHhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---Cc
Q 007998          340 NCGVKPNMKHYGSVVDLLGRAG-RLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN---NC  413 (582)
Q Consensus       340 ~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~  413 (582)
                      +....+....|...+.+-.+.+ +.+.|.++|+..  ....+...|...+......|+.+.|..+|++++...|+   ..
T Consensus       462 ~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~  541 (679)
T 4e6h_A          462 RLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK  541 (679)
T ss_dssp             HTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred             HhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence            7411223344444444444444 589999999876  22236778888888888899999999999999998873   34


Q ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          414 GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       414 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      ..+...+..-...|..+.+.++.+++.+.-..
T Consensus       542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          542 MIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             HHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            56777777778899999999999999876543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.36  E-value=2.9e-12  Score=124.35  Aligned_cols=165  Identities=10%  Similarity=0.043  Sum_probs=93.4

Q ss_pred             hHHHHHHHHHHhCCChhHHHHHHHHHHHc-------CCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc------CC
Q 007998          175 ASWNALIAGLAQGNLASEAVDLFKRMKME-------GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE------RL  241 (582)
Q Consensus       175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~  241 (582)
                      .+|..+...|...|++++|+.+|+++.+.       .. +....++..+...+...|++++|...+.++++.      +.
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            44555555566666666666666555542       11 223344555555666666666666666655543      11


Q ss_pred             -CCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C---------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc----
Q 007998          242 -DMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C---------RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA----  306 (582)
Q Consensus       242 -~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----  306 (582)
                       +.....+..+...|...|++++|.+.|++.. .         ......|..+...|...|++++|+..|+++.+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence             1124455566666666666666666665443 0         112345666666677777777777777766553    


Q ss_pred             --CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998          307 --GVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMAN  340 (582)
Q Consensus       307 --g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~  340 (582)
                        +..|+. .++..+...+...|++++|..+++++.+
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              112322 3566666677777777777777777665

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.36  E-value=3.6e-09  Score=112.67  Aligned_cols=398  Identities=7%  Similarity=-0.028  Sum_probs=272.6

Q ss_pred             chHHHHHHhhcCCccChhHHHHHHHHHHHhCCCCCCCcchhchHHHHHhcCCC-CC---HHHHHHHHhcCC--C---CCh
Q 007998            3 NLNALLQKCSSNGAVSHIHIKQLQAHLTTTGQFQSKLFPVRSKIIEFYALSPL-NE---LAYAHALFRQIN--A---PST   73 (582)
Q Consensus         3 ~~~~~l~ac~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~~-g~---~~~A~~~f~~~~--~---~~~   73 (582)
                      +|..++..+-..  +++..++.++..+++.-.. .  ..+   |..-+.+-.+ |+   ++.+..+|++..  .   |++
T Consensus        68 ~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~-~--~~l---W~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv  139 (679)
T 4e6h_A           68 LYVKLLKHHVSL--KQWKQVYETFDKLHDRFPL-M--ANI---WCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL  139 (679)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTT-C--HHH---HHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred             HHHHHHHHHHhc--CcHHHHHHHHHHHHHHCCC-C--HHH---HHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence            566777777663  3589999999999876322 2  223   4566666556 77   999999999854  2   888


Q ss_pred             hHHHHHHHHHHcCCCc----h----HHHHHHHHHHh-CCC-CCCh-hHHHHHHHHHH---------hcCChHHHHHHHHH
Q 007998           74 NDFNAVLRGLAHSSKP----T----NAVLWYRQMLR-GSH-RSDA-LTCSFALKACA---------RVLALFETLQIHSH  133 (582)
Q Consensus        74 ~~~~~li~~~~~~g~~----~----~A~~~~~~m~~-~g~-~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~  133 (582)
                      ..|...+....+.++.    +    ...++|+..+. .|. .|+. ..|...+....         ..++++.++.+|..
T Consensus       140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r  219 (679)
T 4e6h_A          140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT  219 (679)
T ss_dssp             HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence            8999988776665543    2    34477877654 366 5654 46666655432         23457789999999


Q ss_pred             HHHcCCCCchHHHHHHHHHHHh-------------cCCHHHHHHHHhhc-----------CC----------C--C----
Q 007998          134 VLRHGFLADALLGTTLLDVYAK-------------VGEIVSAKKVFDEM-----------GV----------R--D----  173 (582)
Q Consensus       134 ~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~m-----------~~----------~--~----  173 (582)
                      ++......-..+|......-..             ..+++.|...+.++           +.          |  +    
T Consensus       220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~  299 (679)
T 4e6h_A          220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV  299 (679)
T ss_dssp             HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred             HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence            8864222222333222111111             11233455555431           10          0  0    


Q ss_pred             --hhHHHHHHHHHHhCC-------ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHH-HHHHHHHHcCCCC
Q 007998          174 --IASWNALIAGLAQGN-------LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGD-KIHEYIREERLDM  243 (582)
Q Consensus       174 --~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~  243 (582)
                        ...|...+.---.++       ..+.+..+|++.+..-  +-+...|...+.-+...|+.++|. .+++..+... +.
T Consensus       300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~  376 (679)
T 4e6h_A          300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PN  376 (679)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CC
Confidence              245666665444433       1234567888888764  667888888888888889999996 9999998764 45


Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhcccC------------CCC------------HHHHHHHHHHHHhCCChhHHHHH
Q 007998          244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIKC------------RKS------------LVTWNTMVMAFAVHGDGPRALEL  299 (582)
Q Consensus       244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------~~~------------~~~~~~li~~~~~~g~~~~A~~~  299 (582)
                      +...+...+..+.+.|+++.|.++|+++..            .|+            ...|...+....+.|+.+.|..+
T Consensus       377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v  456 (679)
T 4e6h_A          377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI  456 (679)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            677888899999999999999999997651            132            23688888888889999999999


Q ss_pred             HHHHHhc-CCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC
Q 007998          300 FEQMGRA-GVKPDDVSYLAALCACNH-AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG  376 (582)
Q Consensus       300 ~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~  376 (582)
                      |.+..+. +. +....|......-.+ .++.+.|.++|+...+. .+-+...+...++.....|+.+.|..+|++. ...
T Consensus       457 f~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~  534 (679)
T 4e6h_A          457 FGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI  534 (679)
T ss_dssp             HHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred             HHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            9999875 21 122333322222223 35699999999999983 2345566778888888999999999999986 323


Q ss_pred             C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 007998          377 T----DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC  413 (582)
Q Consensus       377 p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~  413 (582)
                      |    ....|...+..-..+|+.+.+..+.+++.+..|+++
T Consensus       535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            3    357899999999999999999999999999999764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.34  E-value=1.9e-10  Score=111.73  Aligned_cols=162  Identities=12%  Similarity=0.033  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV-TVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM  254 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  254 (582)
                      .|..++..+.+.|++++|.++|++..+..  +.+.. .|..++..+.+.|++++|..+|++.++... .+...|......
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~  177 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence            44444444444444444444444444321  11121 344444444444444444444444444321 122333222222


Q ss_pred             HH-hcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCC--HHHHHHHHHHHHcCCCH
Q 007998          255 YA-KCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPD--DVSYLAALCACNHAGLV  328 (582)
Q Consensus       255 y~-~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~  328 (582)
                      .. ..|++++|.++|++..  .+.+...|..++..+.+.|+.++|..+|++..... +.|+  ...|..++....+.|+.
T Consensus       178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~  257 (308)
T 2ond_A          178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            11 2355555555555432  12344555555555555566666666666655532 2332  33455555555555666


Q ss_pred             HHHHHHHHHHhH
Q 007998          329 DDGVRLFNSMAN  340 (582)
Q Consensus       329 ~~a~~~~~~~~~  340 (582)
                      +.|..+++++.+
T Consensus       258 ~~a~~~~~~a~~  269 (308)
T 2ond_A          258 ASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666666555

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=4e-12  Score=123.35  Aligned_cols=233  Identities=11%  Similarity=0.078  Sum_probs=171.2

Q ss_pred             CHHHHHHHHHHHhccCCcHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C-------
Q 007998          209 NEVTVLGALAACGHLGAWKEGDKIHEYIREE-------RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C-------  273 (582)
Q Consensus       209 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~-------  273 (582)
                      +..++..+...+...|++++|..+++++.+.       ..+....++..+...|...|++++|...|++.. .       
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4567888889999999999999999998874       233456788899999999999999999998654 0       


Q ss_pred             --CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc------CCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHc---
Q 007998          274 --RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA------GVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANC---  341 (582)
Q Consensus       274 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~---  341 (582)
                        .....+|..+...|...|++++|+..|+++.+.      +-.|+. ..+..+...+...|++++|..+++++.+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence              123457888999999999999999999998764      223433 56788888999999999999999999873   


Q ss_pred             ---CCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC-C---------CCCC-------HHHHHHHHHHHHhcCChHHHHH
Q 007998          342 ---GVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV-S---------MGTD-------MVLWQTLLGACQLYGDVEMAEI  400 (582)
Q Consensus       342 ---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---------~~p~-------~~~~~~ll~~~~~~g~~~~a~~  400 (582)
                         +..| ....+..+...|.+.|++++|.+.++++ .         ..+.       ...+..+...+...+.+.++..
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  265 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG  265 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence               2123 3457788899999999999999998765 1         1111       1223333344556667777888


Q ss_pred             HHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          401 ASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       401 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      .+++.....|..+.++..++.+|...|++++|...+++..+
T Consensus       266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88888888888889999999999999999999999998764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.32  E-value=3.9e-11  Score=129.26  Aligned_cols=163  Identities=11%  Similarity=0.119  Sum_probs=130.0

Q ss_pred             CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhh
Q 007998          276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVV  354 (582)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  354 (582)
                      +..+|+.|...|.+.|++++|++.|++..+.  .|+ ...+..+..++.+.|++++|...|++.++.. +-+...|..+.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            4567777777888888888888888877764  454 4577777778888888888888888877732 22456777788


Q ss_pred             hHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHH
Q 007998          355 DLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV  432 (582)
Q Consensus       355 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  432 (582)
                      .+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|+..|+++++++|+++..+..|+.+|...|+|++|
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            8888888888888888765 4445 6788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 007998          433 GRVRKAMKN  441 (582)
Q Consensus       433 ~~~~~~m~~  441 (582)
                      .+.+++..+
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988887653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.31  E-value=2e-09  Score=107.56  Aligned_cols=261  Identities=15%  Similarity=0.015  Sum_probs=164.0

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHhccCCcHHHHHHHHHHHHcCCC-Cc----hhHHHH
Q 007998          180 LIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV----TVLGALAACGHLGAWKEGDKIHEYIREERLD-MN----VVVCNA  250 (582)
Q Consensus       180 li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~  250 (582)
                      ....+...|++++|...+++...... ..+..    ++..+...+...|++++|...+.+..+.... .+    ...+..
T Consensus        20 ~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   98 (373)
T 1hz4_A           20 RAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   98 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            33445566777777777766655432 22222    3444555566667777777777666542110 11    223455


Q ss_pred             HHHHHHhcCCHHHHHHHHhccc------CC---C-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCC--C--CHHHHH
Q 007998          251 VIDMYAKCGLLDKAFEVFDNIK------CR---K-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVK--P--DDVSYL  316 (582)
Q Consensus       251 li~~y~~~g~~~~A~~~~~~~~------~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~  316 (582)
                      +...|...|++++|...|++..      ..   | ....+..+...+...|++++|...+++.......  |  ...++.
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  178 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  178 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence            6677777788887777776543      01   2 1235566777778888888888888877653211  1  124566


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhHc-CCccChhhHH-----hhhhHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHH
Q 007998          317 AALCACNHAGLVDDGVRLFNSMANC-GVKPNMKHYG-----SVVDLLGRAGRLQEACDIVKSV-SMGTD-----MVLWQT  384 (582)
Q Consensus       317 ~ll~a~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~  384 (582)
                      .+...+...|++++|...+++.... .-......+.     ..+..+...|++++|...+++. ...|.     ...+..
T Consensus       179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  258 (373)
T 1hz4_A          179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  258 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence            6777778888888888888887762 1111111111     2334467888888888888876 22221     335667


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCC-----C-chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          385 LLGACQLYGDVEMAEIASRKLVEMGSN-----N-CGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       385 ll~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      +...+...|++++|...++++.+..+.     + ...+..++.++...|+.++|...+++...
T Consensus       259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            778888889999999999988775321     1 23667788889999999999998887654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.29  E-value=1.5e-10  Score=116.07  Aligned_cols=303  Identities=9%  Similarity=0.023  Sum_probs=148.4

Q ss_pred             CCChhHHHHHHHHH--HhcCChHHHHHHHHHHHHcC--C--CCchHHHHHHHHHHH--hcCCHHHHH---------HHHh
Q 007998          105 RSDALTCSFALKAC--ARVLALFETLQIHSHVLRHG--F--LADALLGTTLLDVYA--KVGEIVSAK---------KVFD  167 (582)
Q Consensus       105 ~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~y~--~~g~~~~A~---------~~f~  167 (582)
                      .|+...-..+-..+  ...+++++|.++.+.+.+..  .  .++...|-.|+..-.  -.+.+..+.         ..++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            34444444455555  57778888888887765531  1  222333333333210  011111111         3333


Q ss_pred             hcC---CC-C-h---hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCCcHHHHHHHHH
Q 007998          168 EMG---VR-D-I---ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPN----EVTVLGALAACGHLGAWKEGDKIHEY  235 (582)
Q Consensus       168 ~m~---~~-~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~  235 (582)
                      .+.   .+ + .   ..|......+...|++++|+..|++....-...+|    ..++..+..++...|+++.|...+.+
T Consensus        87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~  166 (378)
T 3q15_A           87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ  166 (378)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            332   11 0 0   11223344456677777777777776543110122    23556666666677777777776666


Q ss_pred             HHHcCC-----CC-chhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHHHHhCCChhHHHHHHH
Q 007998          236 IREERL-----DM-NVVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMAFAVHGDGPRALELFE  301 (582)
Q Consensus       236 ~~~~~~-----~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~  301 (582)
                      .++...     .+ ...+++.+...|...|++++|.+.|++..    ..++    ..+++.+...|...|++++|+..|+
T Consensus       167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~  246 (378)
T 3q15_A          167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ  246 (378)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            654210     11 13455566666666666666666665432    0011    2345556666666666666666666


Q ss_pred             HHHhc----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccC---hhhHHhhhhHHhhcCC---HHHHHHHH
Q 007998          302 QMGRA----GVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPN---MKHYGSVVDLLGRAGR---LQEACDIV  370 (582)
Q Consensus       302 ~m~~~----g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~---~~~~~~li~~~~~~g~---~~~A~~~~  370 (582)
                      +..+.    +.+....++..+...+.+.|++++|...+++..+ ..-.++   ...+..+...|...++   +++|...+
T Consensus       247 ~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~  326 (378)
T 3q15_A          247 KAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF  326 (378)
T ss_dssp             HHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            65541    1111134555555666666666666666666655 211111   2233344444445555   55555555


Q ss_pred             HhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998          371 KSVSMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVE  407 (582)
Q Consensus       371 ~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  407 (582)
                      ++.+..|+ ...+..+...|...|++++|...++++++
T Consensus       327 ~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          327 EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55432222 22333444455555555555555555443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.28  E-value=9.1e-11  Score=121.29  Aligned_cols=209  Identities=10%  Similarity=-0.065  Sum_probs=166.9

Q ss_pred             CHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCCh-hHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHH
Q 007998          158 EIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLA-SEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIH  233 (582)
Q Consensus       158 ~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~  233 (582)
                      .++++...+++..   ..+...|..+...|...|++ ++|++.|++..+..  +.+...+..+..++...|++++|...+
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3667777776653   34678999999999999999 99999999999885  567889999999999999999999999


Q ss_pred             HHHHHcCCCCchhHHHHHHHHHHhc---------CCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhC--------CChh
Q 007998          234 EYIREERLDMNVVVCNAVIDMYAKC---------GLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVH--------GDGP  294 (582)
Q Consensus       234 ~~~~~~~~~~~~~~~~~li~~y~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~--------g~~~  294 (582)
                      ++.++..  |+...+..+...|...         |++++|.+.|++..  .+.+...|..+..+|...        |+++
T Consensus       161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            9998864  5578888899999998         89999999988754  355678888888888888        8888


Q ss_pred             HHHHHHHHHHhcCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHH
Q 007998          295 RALELFEQMGRAGVKP----DDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIV  370 (582)
Q Consensus       295 ~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  370 (582)
                      +|+..|++..+.  .|    +...+..+..++...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus       239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888888774  44    56677788888888888888888888887732 224456666777777777777777766


Q ss_pred             HhC
Q 007998          371 KSV  373 (582)
Q Consensus       371 ~~~  373 (582)
                      .++
T Consensus       316 ~~~  318 (474)
T 4abn_A          316 GKT  318 (474)
T ss_dssp             TTC
T ss_pred             ccc
Confidence            554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.28  E-value=1.9e-10  Score=101.91  Aligned_cols=161  Identities=15%  Similarity=0.046  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 007998          246 VVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACN  323 (582)
Q Consensus       246 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~  323 (582)
                      ..+..+...|...|++++|...|+++.  .+.+...|..+...+...|++++|...++++.+.  .|             
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~-------------   73 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--AP-------------   73 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT-------------
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC-------------
Confidence            344555555666666666666666543  1234445555555555555555555555555443  11             


Q ss_pred             cCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHH
Q 007998          324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SM-GTDMVLWQTLLGACQLYGDVEMAEIA  401 (582)
Q Consensus       324 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~  401 (582)
                                           .+...+..+...|...|++++|.+.++++ .. +.+...|..+...+...|++++|...
T Consensus        74 ---------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~  132 (186)
T 3as5_A           74 ---------------------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS  132 (186)
T ss_dssp             ---------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ---------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence                                 22333444444445555555555555443 11 12455666666777777777777777


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      ++++++..|.++..+..++.+|...|++++|...+++..+.
T Consensus       133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  173 (186)
T 3as5_A          133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            77777777777777777777777777777777777766543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.28  E-value=2e-09  Score=107.82  Aligned_cols=300  Identities=10%  Similarity=0.004  Sum_probs=180.1

Q ss_pred             CCchHHHHHHHHHH--HhcCCHHHHHHHHhhcC-------C-CChhHHHHHHHH--HHhCCChhHHH---------HHHH
Q 007998          140 LADALLGTTLLDVY--AKVGEIVSAKKVFDEMG-------V-RDIASWNALIAG--LAQGNLASEAV---------DLFK  198 (582)
Q Consensus       140 ~~~~~~~~~li~~y--~~~g~~~~A~~~f~~m~-------~-~~~~~~~~li~~--~~~~g~~~~A~---------~~~~  198 (582)
                      .|+..+-+.|-+.|  .+.+++++|.++++++.       + .++..|-.++..  ....+....+.         +.++
T Consensus         7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~   86 (378)
T 3q15_A            7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE   86 (378)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence            45566666666666  77888888887776542       1 133334444332  11112222222         5555


Q ss_pred             HHHHcCCCCCCH----HHHHHHHHHHhccCCcHHHHHHHHHHHHcC--CC---CchhHHHHHHHHHHhcCCHHHHHHHHh
Q 007998          199 RMKMEGVFKPNE----VTVLGALAACGHLGAWKEGDKIHEYIREER--LD---MNVVVCNAVIDMYAKCGLLDKAFEVFD  269 (582)
Q Consensus       199 ~m~~~g~~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~  269 (582)
                      .+..... +.+.    ..+......+...|++++|...+.+..+..  ..   ....++..+...|...|+++.|...++
T Consensus        87 ~i~~~~~-~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~  165 (378)
T 3q15_A           87 TIETPQK-KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL  165 (378)
T ss_dssp             HHHGGGH-HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhccCC-CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            5543221 1111    123344556677888888888888776531  11   124567777888888888888877776


Q ss_pred             ccc----CCC-----CHHHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHH
Q 007998          270 NIK----CRK-----SLVTWNTMVMAFAVHGDGPRALELFEQMGRA----GVKPD-DVSYLAALCACNHAGLVDDGVRLF  335 (582)
Q Consensus       270 ~~~----~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~  335 (582)
                      +..    ..+     ...+++.+...|...|++++|++.|++..+.    +-.+. ..++..+...+...|++++|...+
T Consensus       166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~  245 (378)
T 3q15_A          166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF  245 (378)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            542    111     1346777788888888888888888776652    11111 246677777888888888888888


Q ss_pred             HHHhH-c---CCccChhhHHhhhhHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hHHHHHH
Q 007998          336 NSMAN-C---GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV----SM--GTD-MVLWQTLLGACQLYGD---VEMAEIA  401 (582)
Q Consensus       336 ~~~~~-~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~  401 (582)
                      ++..+ .   +.+....++..+...|.+.|++++|.+.+++.    +.  .|. ...+..+...+...++   +++|...
T Consensus       246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~  325 (378)
T 3q15_A          246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY  325 (378)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            87776 1   22223566777778888888888888887754    11  122 3344445555566666   6666666


Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          402 SRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       402 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      +++. ...|.....+..++..|...|++++|...+++..+
T Consensus       326 ~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          326 FEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6552 11133345666788888888888888888777643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.25  E-value=5.9e-10  Score=98.61  Aligned_cols=170  Identities=13%  Similarity=0.100  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHH
Q 007998          210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAF  287 (582)
Q Consensus       210 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~  287 (582)
                      ...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...|++..  .+.+...|..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            4567778888999999999999999887654 3467888999999999999999999999764  355778888899999


Q ss_pred             HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHH
Q 007998          288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEAC  367 (582)
Q Consensus       288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  367 (582)
                      ...|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++++.+..                         
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------------  140 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------------------------  140 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------------------------
Confidence            99999999999999887752 3345566666666667777777777666665421                         


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch
Q 007998          368 DIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG  414 (582)
Q Consensus       368 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~  414 (582)
                              ..+...|..+...+...|++++|...++++++..|+++.
T Consensus       141 --------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          141 --------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             --------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             --------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence                    124556666777777777777777777777777765543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.24  E-value=6.5e-10  Score=102.63  Aligned_cols=206  Identities=8%  Similarity=-0.004  Sum_probs=159.5

Q ss_pred             CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C-CCCHHHHHHHH
Q 007998          207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C-RKSLVTWNTMV  284 (582)
Q Consensus       207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~-~~~~~~~~~li  284 (582)
                      +.|+..+......+...|++++|...|++.++...+++...+..+...|.+.|++++|.+.|++.. . +.+...|..+.
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            457788899999999999999999999999998754677777779999999999999999999764 2 34567899999


Q ss_pred             HHHHhCCChhHHHHHHHHHHhcCCCCC-H-------HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC---hhhHHhh
Q 007998          285 MAFAVHGDGPRALELFEQMGRAGVKPD-D-------VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN---MKHYGSV  353 (582)
Q Consensus       285 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l  353 (582)
                      ..|...|++++|+..|++..+.  .|+ .       ..|..+...+...|++++|...|+++.+.  .|+   ...+..+
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l  159 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence            9999999999999999999875  343 3       35777778888999999999999999874  344   4667777


Q ss_pred             hhHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          354 VDLLGRAGRLQEACDIVKSV-SM-GTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY  423 (582)
Q Consensus       354 i~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  423 (582)
                      ..+|...|+.     .++++ .. ..+...|....  ....+.+++|...++++++++|+++.+...+..+.
T Consensus       160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            7777665543     22322 11 12344444443  33456789999999999999999988777776554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.21  E-value=6.7e-09  Score=103.63  Aligned_cols=225  Identities=8%  Similarity=-0.100  Sum_probs=121.6

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHhCCCCCChh----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-Cc----hHHHHH
Q 007998           78 AVLRGLAHSSKPTNAVLWYRQMLRGSHRSDAL----TCSFALKACARVLALFETLQIHSHVLRHGFL-AD----ALLGTT  148 (582)
Q Consensus        78 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~  148 (582)
                      .+...+...|++++|...+++.+......+..    .+..+...+...|++++|.+.++..++.... .+    ..++..
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   98 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   98 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            33445567788888888888877654222222    3445556666778888888888777653211 11    123455


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcC-------C---C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC----CHHHH
Q 007998          149 LLDVYAKVGEIVSAKKVFDEMG-------V---R-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKP----NEVTV  213 (582)
Q Consensus       149 li~~y~~~g~~~~A~~~f~~m~-------~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~p----d~~t~  213 (582)
                      +...|...|++++|...+++..       .   + ....+..+...+...|++++|...+++...... ..    ...++
T Consensus        99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~  177 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS-SYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TSCGGGGHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-ccCcHHHHHHH
Confidence            6666777777777776665542       1   1 123445556666667777777777766654321 10    12345


Q ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCCc--hhHHH----HHHHHHHhcCCHHHHHHHHhcccCCCC-------HHHH
Q 007998          214 LGALAACGHLGAWKEGDKIHEYIREERLDMN--VVVCN----AVIDMYAKCGLLDKAFEVFDNIKCRKS-------LVTW  280 (582)
Q Consensus       214 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~  280 (582)
                      ..+...+...|++++|...+++..+....++  .....    ..+..+...|++++|...+++.. .++       ...+
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA-KPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-CCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC-CCCCCcchhhHHHH
Confidence            5555566666666666666666554311111  11111    22233556666666666665543 111       1133


Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHH
Q 007998          281 NTMVMAFAVHGDGPRALELFEQMG  304 (582)
Q Consensus       281 ~~li~~~~~~g~~~~A~~~~~~m~  304 (582)
                      ..+...+...|++++|...+++..
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~  280 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELN  280 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444555555555555555555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.21  E-value=3.2e-10  Score=104.73  Aligned_cols=190  Identities=11%  Similarity=-0.031  Sum_probs=124.3

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccc--CC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHH
Q 007998          244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CR-KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAAL  319 (582)
Q Consensus       244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll  319 (582)
                      |+..+..+...|.+.|++++|...|++..  .+ ++...|..+..++...|++++|+..|++..+.  .|+. ..+..+.
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~   83 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS   83 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence            45667777777778888888888877553  23 66666666777777888888888888777763  4543 4666777


Q ss_pred             HHHHcCCCHHHHHHHHHHHhHcCCccCh-------hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 007998          320 CACNHAGLVDDGVRLFNSMANCGVKPNM-------KHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD---MVLWQTLLGA  388 (582)
Q Consensus       320 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~  388 (582)
                      .++...|++++|...+++..+.. +.+.       ..|..+...+...|++++|.+.|++. ...|+   ...|..+...
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  162 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL  162 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence            77777788888888887777622 1122       34566666677777777777777765 44554   3455555555


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       389 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      +..     .+...++++..+.+.++..|..+  .....+.+++|...+++..+..
T Consensus       163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence            543     34455566666665554444332  2334556799999999887654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.11  E-value=3.4e-09  Score=114.20  Aligned_cols=160  Identities=10%  Similarity=-0.017  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 007998          143 ALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA  219 (582)
Q Consensus       143 ~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a  219 (582)
                      ...++.|..+|.+.|++++|++.|++..   ..+..+|+.+...|.+.|++++|++.|++.++..  +-+...|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence            4456666666666666666666666542   2345566666666666667777776666666654  4456666666666


Q ss_pred             HhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHH
Q 007998          220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRAL  297 (582)
Q Consensus       220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~  297 (582)
                      +...|++++|.+.+++.++... -+...++.+..+|.+.|++++|++.|++..  .+.+...|..+...|...|++++|.
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence            7777777777777766666542 245666667777777777777777776543  2345566777777777777777777


Q ss_pred             HHHHHHHh
Q 007998          298 ELFEQMGR  305 (582)
Q Consensus       298 ~~~~~m~~  305 (582)
                      +.+++..+
T Consensus       166 ~~~~kal~  173 (723)
T 4gyw_A          166 ERMKKLVS  173 (723)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76666543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.08  E-value=1.6e-09  Score=103.11  Aligned_cols=221  Identities=11%  Similarity=0.093  Sum_probs=156.2

Q ss_pred             hccCCcHHHHHHHHHHHHc-------CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-C---------CCCHHHHHHH
Q 007998          221 GHLGAWKEGDKIHEYIREE-------RLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-C---------RKSLVTWNTM  283 (582)
Q Consensus       221 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~---------~~~~~~~~~l  283 (582)
                      ...|++++|...+++.++.       ..+....++..+...|...|++++|...|++.. .         +....+|..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4668888888888887652       222346788899999999999999999998654 0         1234578889


Q ss_pred             HHHHHhCCChhHHHHHHHHHHhc------CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHc------CCcc-Chhh
Q 007998          284 VMAFAVHGDGPRALELFEQMGRA------GVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANC------GVKP-NMKH  349 (582)
Q Consensus       284 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~  349 (582)
                      ...|...|++++|+..|++..+.      .-.|+ ..++..+...+...|++++|..+++++.+.      +-.| ....
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998764      11233 457888888999999999999999998873      1123 3567


Q ss_pred             HHhhhhHHhhcCCHHHHHHHHHhC----------CCCC-CHHHHHHHHHHHHhcCChH------HHHHHHHHHHHcCCCC
Q 007998          350 YGSVVDLLGRAGRLQEACDIVKSV----------SMGT-DMVLWQTLLGACQLYGDVE------MAEIASRKLVEMGSNN  412 (582)
Q Consensus       350 ~~~li~~~~~~g~~~~A~~~~~~~----------~~~p-~~~~~~~ll~~~~~~g~~~------~a~~~~~~~~~~~p~~  412 (582)
                      +..+...|.+.|++++|.+.+++.          ...+ ....|..+.......+...      .+...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            888899999999999999998765          1122 2333444444443333322      2222222222223445


Q ss_pred             chhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          413 CGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       413 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      +.++..++.+|...|++++|...+++..+
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66888999999999999999999998765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.04  E-value=1.9e-08  Score=94.93  Aligned_cols=205  Identities=12%  Similarity=0.018  Sum_probs=137.2

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC-C---HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCC-HHHHH
Q 007998          244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK-S---LVTWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPD-DVSYL  316 (582)
Q Consensus       244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~  316 (582)
                      +...+..+...+.+.|++++|...|+++. ..| +   ...+..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            45666667777788888888888887664 122 3   55677777788888888888888888776421 122 23455


Q ss_pred             HHHHHHHc--------CCCHHHHHHHHHHHhHcCCccCh-hhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007998          317 AALCACNH--------AGLVDDGVRLFNSMANCGVKPNM-KHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLG  387 (582)
Q Consensus       317 ~ll~a~~~--------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~  387 (582)
                      .+..++..        .|++++|...|+++.+..  |+. .....+....       .....+        ...+..+..
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~-------~~~~~~--------~~~~~~la~  156 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIR-------ELRAKL--------ARKQYEAAR  156 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHH-------HHHHHH--------HHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHH-------HHHHHH--------HHHHHHHHH
Confidence            56666666        777788888877777622  221 1111111110       000000        112466778


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHHhc----------CCchHHHHHHHHHHhCCCccCCcccEEE
Q 007998          388 ACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSNLYAAY----------ERWDDVGRVRKAMKNRDVKKVPGFSYIE  454 (582)
Q Consensus       388 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~  454 (582)
                      .+...|++++|+..++++++..|++   +..+..++.+|...          |++++|...++++.+....         
T Consensus       157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~---------  227 (261)
T 3qky_A          157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD---------  227 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT---------
T ss_pred             HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC---------
Confidence            8999999999999999999999974   45788999999877          8899999999998865432         


Q ss_pred             ECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 007998          455 VGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKE  488 (582)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~  488 (582)
                                    ++...++...+.++...+..
T Consensus       228 --------------~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          228 --------------SPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             --------------CTHHHHHHHHHHHHHHHHHH
T ss_pred             --------------ChHHHHHHHHHHHHHHHHHH
Confidence                          34456777777777666554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.03  E-value=1.9e-09  Score=102.53  Aligned_cols=197  Identities=12%  Similarity=-0.026  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CCchHHHHHHHHHHHhcCCHHHHHHHHhhcCC----------
Q 007998          109 LTCSFALKACARVLALFETLQIHSHVLRH------GF-LADALLGTTLLDVYAKVGEIVSAKKVFDEMGV----------  171 (582)
Q Consensus       109 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~----------  171 (582)
                      .++..+...+...|++++|.+.+..+++.      +- +....++..+...|...|++++|.+.|++...          
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  123 (283)
T 3edt_B           44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH  123 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34555555556666666666666655543      11 11234555566666666666666666554421          


Q ss_pred             C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc-----
Q 007998          172 R-DIASWNALIAGLAQGNLASEAVDLFKRMKME------GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE-----  239 (582)
Q Consensus       172 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----  239 (582)
                      + ...+|..+...|...|++++|++.|++..+.      +..+....++..+..++...|++++|...++++++.     
T Consensus       124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~  203 (283)
T 3edt_B          124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE  203 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            1 2345666666666666666666666666543      110122345666666666677777777766666543     


Q ss_pred             --CCCC-chhHHHHHHHHHHhcCC------HHHHHHHHhccc-C-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998          240 --RLDM-NVVVCNAVIDMYAKCGL------LDKAFEVFDNIK-C-RKSLVTWNTMVMAFAVHGDGPRALELFEQMGR  305 (582)
Q Consensus       240 --~~~~-~~~~~~~li~~y~~~g~------~~~A~~~~~~~~-~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (582)
                        ...+ ....+..+...+...+.      +..+...++... . +....++..+...|...|++++|..+|++..+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              1111 12222223333322222      223333333332 0 11223455566666666666666666665543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.02  E-value=5.9e-09  Score=100.28  Aligned_cols=193  Identities=7%  Similarity=-0.016  Sum_probs=101.3

Q ss_pred             HhccCCcHHHHHHHHHHHHc----CCCCc-hhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHH
Q 007998          220 CGHLGAWKEGDKIHEYIREE----RLDMN-VVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMA  286 (582)
Q Consensus       220 ~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~  286 (582)
                      +...|++++|...+.+..+.    |..++ ..+++.+..+|.+.|++++|...|++..    ...+    ..+|+.+...
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  126 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI  126 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33445555555555544432    11111 3455555556666666666655555432    0011    2356666666


Q ss_pred             HHhC-CChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh------hhHHhhh
Q 007998          287 FAVH-GDGPRALELFEQMGRAGV-KPD----DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM------KHYGSVV  354 (582)
Q Consensus       287 ~~~~-g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li  354 (582)
                      |... |++++|+..|++..+... ..+    ..++..+...+...|++++|...|++..+.......      ..|..+.
T Consensus       127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  206 (292)
T 1qqe_A          127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG  206 (292)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            7664 777777777776654210 001    235666666777777777777777777663211111      1345556


Q ss_pred             hHHhhcCCHHHHHHHHHhC-CCCCCH------HHHHHHHHHHH--hcCChHHHHHHHHHHHHcCCCC
Q 007998          355 DLLGRAGRLQEACDIVKSV-SMGTDM------VLWQTLLGACQ--LYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       355 ~~~~~~g~~~~A~~~~~~~-~~~p~~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      .+|...|++++|...+++. .+.|+.      ..+..++.++.  ..+++++|...|+++..++|..
T Consensus       207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~  273 (292)
T 1qqe_A          207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK  273 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence            6666777777777777665 333421      12334444443  3455666666666666665543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.01  E-value=3.8e-08  Score=93.23  Aligned_cols=57  Identities=14%  Similarity=0.045  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhccc-CC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998          249 NAVIDMYAKCGLLDKAFEVFDNIK-CR---KSLVTWNTMVMAFAVHGDGPRALELFEQMGR  305 (582)
Q Consensus       249 ~~li~~y~~~g~~~~A~~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (582)
                      ..+..+|...|++++|++++.+.. ..   -+...+-.++..+.+.|+.+.|.+.+++|.+
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            345555555555555555555442 11   1333444455555555555555555555544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.98  E-value=1.6e-08  Score=95.40  Aligned_cols=205  Identities=9%  Similarity=-0.017  Sum_probs=145.5

Q ss_pred             CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC----CHHH
Q 007998          207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMN--VVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK----SLVT  279 (582)
Q Consensus       207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~----~~~~  279 (582)
                      +.+...+......+.+.|++++|...|+.+++......  ...+..+..+|.+.|++++|...|++.. ..|    ....
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            45677888888999999999999999999998753311  6778889999999999999999999875 122    2456


Q ss_pred             HHHHHHHHHh--------CCChhHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhH
Q 007998          280 WNTMVMAFAV--------HGDGPRALELFEQMGRAGVKPDDV-SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHY  350 (582)
Q Consensus       280 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  350 (582)
                      +..+..++..        .|++++|+..|++..+.  .|+.. ....+              ..+..+..    -....+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~----~~~~~~  151 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRA----KLARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHH----HHHHHH
Confidence            7788888988        99999999999999885  34432 11111              11111111    001124


Q ss_pred             HhhhhHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCch-
Q 007998          351 GSVVDLLGRAGRLQEACDIVKSV----SMGT-DMVLWQTLLGACQLY----------GDVEMAEIASRKLVEMGSNNCG-  414 (582)
Q Consensus       351 ~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~-  414 (582)
                      ..+...|.+.|++++|...|+++    |..+ ....+..+..++...          |++++|...++++++..|+++. 
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            45677888889999998888776    3222 245677777777755          8899999999999999998753 


Q ss_pred             --hHHHHHHHHHhcCCchH
Q 007998          415 --DFVLLSNLYAAYERWDD  431 (582)
Q Consensus       415 --~~~~l~~~~~~~g~~~~  431 (582)
                        +...+..++...+++++
T Consensus       232 ~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          232 RTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence              34455555555544433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.97  E-value=1.8e-08  Score=96.86  Aligned_cols=155  Identities=8%  Similarity=-0.106  Sum_probs=77.2

Q ss_pred             HHhcCChHHHHHHHHHHHHc----CCCCc-hHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHHH
Q 007998          118 CARVLALFETLQIHSHVLRH----GFLAD-ALLGTTLLDVYAKVGEIVSAKKVFDEMGV-----RD----IASWNALIAG  183 (582)
Q Consensus       118 ~~~~~~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~  183 (582)
                      +...|++++|.+.+..+++.    |-+++ ..+++.+..+|.+.|++++|...|++...     .+    ..+|+.+...
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~  126 (292)
T 1qqe_A           47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI  126 (292)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34445555555555544432    11111 23455555555555555555555544321     01    2345556666


Q ss_pred             HHhC-CChhHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCch------hHHHHHH
Q 007998          184 LAQG-NLASEAVDLFKRMKMEGVFKPN----EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV------VVCNAVI  252 (582)
Q Consensus       184 ~~~~-g~~~~A~~~~~~m~~~g~~~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li  252 (582)
                      |... |++++|+..|++..+...-..+    ..++..+...+...|++++|...++++.+.......      ..+..+.
T Consensus       127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  206 (292)
T 1qqe_A          127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG  206 (292)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            6664 6666666666665543100001    234555566666666666666666666654322211      1344555


Q ss_pred             HHHHhcCCHHHHHHHHhccc
Q 007998          253 DMYAKCGLLDKAFEVFDNIK  272 (582)
Q Consensus       253 ~~y~~~g~~~~A~~~~~~~~  272 (582)
                      .+|...|++++|...|++..
T Consensus       207 ~~~~~~g~~~~A~~~~~~al  226 (292)
T 1qqe_A          207 LCQLAATDAVAAARTLQEGQ  226 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHGGG
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            55666666666666666543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.97  E-value=5e-08  Score=89.73  Aligned_cols=183  Identities=11%  Similarity=0.027  Sum_probs=119.9

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH----HHH
Q 007998          245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS----LVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD----VSY  315 (582)
Q Consensus       245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~  315 (582)
                      ...+..+...+.+.|++++|...|+++. ..|+    ...+..+..+|.+.|++++|+..|++..+.  .|+.    ..+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence            4455567777888899999998888765 1232    346777888888889999999998888874  3332    133


Q ss_pred             HHHHHHHHc------------------CCCHHHHHHHHHHHhHcCCccCh-hhHHhhhhHHhhcCCHHHHHHHHHhCCCC
Q 007998          316 LAALCACNH------------------AGLVDDGVRLFNSMANCGVKPNM-KHYGSVVDLLGRAGRLQEACDIVKSVSMG  376 (582)
Q Consensus       316 ~~ll~a~~~------------------~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~  376 (582)
                      ..+..++..                  .|++++|...|+++++.  .|+. ..+.++.    +.+......         
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~l~~~~~~~---------  146 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----RLVFLKDRL---------  146 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----HHHHHHHHH---------
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----HHHHHHHHH---------
Confidence            333334432                  34555555555555541  1221 1111100    000000000         


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007998          377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC---GDFVLLSNLYAAYERWDDVGRVRKAMKNRDVKK  446 (582)
Q Consensus       377 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  446 (582)
                        ......+...+...|+++.|...|+++++..|+++   .++..++.+|.+.|++++|.+.++.+...+...
T Consensus       147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence              01113455678899999999999999999999875   568899999999999999999999998876543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.97  E-value=1.5e-08  Score=84.08  Aligned_cols=129  Identities=16%  Similarity=0.207  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHh
Q 007998          279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG  358 (582)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  358 (582)
                      .|..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|..+++++...+                
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------   65 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------   65 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC----------------
Confidence            34555555566666666666666555432 1233444444445555555555555555544421                


Q ss_pred             hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHH
Q 007998          359 RAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKA  438 (582)
Q Consensus       359 ~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~  438 (582)
                                       +.+...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|...+++
T Consensus        66 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  128 (136)
T 2fo7_A           66 -----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK  128 (136)
T ss_dssp             -----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             -----------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence                             123445555556666666666666666666666666666666666666666666666666666


Q ss_pred             HHh
Q 007998          439 MKN  441 (582)
Q Consensus       439 m~~  441 (582)
                      +.+
T Consensus       129 ~~~  131 (136)
T 2fo7_A          129 ALE  131 (136)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.96  E-value=9.7e-10  Score=94.16  Aligned_cols=141  Identities=8%  Similarity=-0.062  Sum_probs=98.4

Q ss_pred             HHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCH
Q 007998          285 MAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL  363 (582)
Q Consensus       285 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  363 (582)
                      ..+...|++++|+..+.+....  .|+. ..+..+...|.+.|++++|.+.|++.++.. +-+...|..+..+|.+.|++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence            3344456666666666665442  3332 344556666777777777777777777632 23456677777777778888


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998          364 QEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIA-SRKLVEMGSNNCGDFVLLSNLYAAYER  428 (582)
Q Consensus       364 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~  428 (582)
                      ++|...|++. ...| +...|..+...+...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            8888777765 4445 577888888889999988766654 589999999999999988888887774

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.92  E-value=4.7e-08  Score=80.92  Aligned_cols=127  Identities=17%  Similarity=0.170  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY  255 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y  255 (582)
                      +|..+...+...|++++|+.+|+++.+..  +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...|
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence            45666666777777777777777776654  4455666666666666677777777766666554 22445555666666


Q ss_pred             HhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998          256 AKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR  305 (582)
Q Consensus       256 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (582)
                      .+.|++++|.+.|+++.  .+.+...|..+...+...|++++|...|+++..
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            66666666666666543  133455566666666666666666666666554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.91  E-value=3.3e-08  Score=94.72  Aligned_cols=173  Identities=10%  Similarity=-0.028  Sum_probs=130.1

Q ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHhHc
Q 007998          263 KAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRLFNSMANC  341 (582)
Q Consensus       263 ~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  341 (582)
                      ...+.+.... +.+...+..+...+.+.|++++|+..|++..+.  .| +...+..+...+...|++++|...++++...
T Consensus       104 ~l~~~l~~~l-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~  180 (287)
T 3qou_A          104 AIRALLDXVL-PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ  180 (287)
T ss_dssp             HHHHHHHHHS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred             HHHHHHHHHc-CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence            3444444544 555666777777788888888888888888774  44 3456777777888888888888888887763


Q ss_pred             CCccChhhHHh-hhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chhH
Q 007998          342 GVKPNMKHYGS-VVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN--CGDF  416 (582)
Q Consensus       342 ~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~  416 (582)
                        .|+...... ....+.+.++.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++  ...+
T Consensus       181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~  258 (287)
T 3qou_A          181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR  258 (287)
T ss_dssp             --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred             --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence              344332222 222356677777788877765 3344 68889999999999999999999999999999987  7899


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHH
Q 007998          417 VLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       417 ~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      ..++.+|...|+.++|...+++..
T Consensus       259 ~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          259 XTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHH
Confidence            999999999999999988887643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.85  E-value=2.6e-07  Score=87.55  Aligned_cols=194  Identities=8%  Similarity=0.032  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007998          193 AVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERL-DMNVVVCNAVIDMYAKCGLLDKAFEVFDNI  271 (582)
Q Consensus       193 A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~  271 (582)
                      |+..|++....+  +++..++..+..++...|++++|.+++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|
T Consensus        85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            677777777665  46666667777888888888888888888766653 236777888889999999999999999887


Q ss_pred             c-CCC-----CHHHHHHHHHHH--HhCC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHc
Q 007998          272 K-CRK-----SLVTWNTMVMAF--AVHG--DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANC  341 (582)
Q Consensus       272 ~-~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~  341 (582)
                      . ..|     +..+...++.++  ...|  ++.+|+.+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus       163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred             HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6 244     244455555552  2233  788888888888654  455333344444677777777777777655431


Q ss_pred             CCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998          342 GVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       342 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  415 (582)
                        .|+.             ++-+-       + ...|+.+...++......|+  .|.++++++.+..|+++..
T Consensus       241 --~p~~-------------~~k~~-------~-~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          241 --YYSV-------------EQKEN-------A-VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             --HHHT-------------TTCHH-------H-HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred             --cccc-------------ccccc-------C-CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence              0000             00000       0 01134444445444444555  6677777777777776543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.85  E-value=1.9e-07  Score=100.92  Aligned_cols=182  Identities=10%  Similarity=0.027  Sum_probs=148.2

Q ss_pred             HhCCChhHHHHHHHHHH--------HcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007998          185 AQGNLASEAVDLFKRMK--------MEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA  256 (582)
Q Consensus       185 ~~~g~~~~A~~~~~~m~--------~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~  256 (582)
                      ...|++++|++.|++..        +..  +.+...+..+..++...|++++|...++++++... .+...+..+..+|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~  478 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAEL  478 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHH
Confidence            77899999999999998        443  55667888889999999999999999999998753 36788899999999


Q ss_pred             hcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHH
Q 007998          257 KCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVR  333 (582)
Q Consensus       257 ~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~  333 (582)
                      +.|++++|.+.|++..  .+.+...|..+..+|.+.|++++ ++.|++..+.  .| +...+..+..++.+.|++++|..
T Consensus       479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999764  24577889999999999999999 9999999875  44 45688889999999999999999


Q ss_pred             HHHHHhHcCCccC-hhhHHhhhhHHhhcC--------CHHHHHHHHHhCC
Q 007998          334 LFNSMANCGVKPN-MKHYGSVVDLLGRAG--------RLQEACDIVKSVS  374 (582)
Q Consensus       334 ~~~~~~~~~~~~~-~~~~~~li~~~~~~g--------~~~~A~~~~~~~~  374 (582)
                      .|+++.+.  .|+ ...+..+..+|...+        ++++|.+.+..+.
T Consensus       556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~  603 (681)
T 2pzi_A          556 TLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP  603 (681)
T ss_dssp             HHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred             HHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence            99988863  454 456666777776544        4777788887774

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.83  E-value=9.6e-08  Score=86.60  Aligned_cols=24  Identities=13%  Similarity=0.206  Sum_probs=14.2

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHHc
Q 007998          180 LIAGLAQGNLASEAVDLFKRMKME  203 (582)
Q Consensus       180 li~~~~~~g~~~~A~~~~~~m~~~  203 (582)
                      ....+.+.|++++|+..|++....
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~   33 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIAL   33 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh
Confidence            344455666666666666666554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.83  E-value=2e-07  Score=84.70  Aligned_cols=163  Identities=9%  Similarity=-0.090  Sum_probs=106.4

Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHhHcCCccChhh
Q 007998          274 RKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAG----LVDDGVRLFNSMANCGVKPNMKH  349 (582)
Q Consensus       274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~~~~~~~~~~~~~  349 (582)
                      ..++.++..+...|...+++++|+..|++..+.|   +...+..+...|.. +    ++++|..+|++..+.|   +...
T Consensus        15 ~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a   87 (212)
T 3rjv_A           15 AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSG   87 (212)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            3455556666666666666666666666665543   33444445555555 4    6667777776665533   3444


Q ss_pred             HHhhhhHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhHH
Q 007998          350 YGSVVDLLGR----AGRLQEACDIVKSV-SMGTD---MVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSNNCGDFV  417 (582)
Q Consensus       350 ~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~  417 (582)
                      +..|..+|..    .+++++|.+.|++. ...|+   +..+..|...|..    .+++++|...|++..+. |.++.++.
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~  166 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence            5555555655    66777777777765 33332   6677777777776    77888888888888887 55667788


Q ss_pred             HHHHHHHhc-C-----CchHHHHHHHHHHhCCC
Q 007998          418 LLSNLYAAY-E-----RWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       418 ~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~  444 (582)
                      .|+.+|... |     ++++|...+++..+.|.
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            888888754 3     78888888888776653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.82  E-value=4.5e-06  Score=79.80  Aligned_cols=229  Identities=8%  Similarity=-0.008  Sum_probs=156.4

Q ss_pred             HhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC--CcHHHHHHHHHHHHcCCCCchhHHHHHHHHH----Hhc
Q 007998          185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG--AWKEGDKIHEYIREERLDMNVVVCNAVIDMY----AKC  258 (582)
Q Consensus       185 ~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~  258 (582)
                      .+....++|++++++++...  +-+...|+.-..++...+  +++++...++.++....+ +..+|+.-...+    .+.
T Consensus        44 ~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           44 KAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN  120 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence            33444568888888888775  555666777777777777  888888888888887544 556666555555    455


Q ss_pred             ---CCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChh--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC----
Q 007998          259 ---GLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGP--RALELFEQMGRAGVKPDDVSYLAALCACNHAGL----  327 (582)
Q Consensus       259 ---g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----  327 (582)
                         ++++++.++++.+.  .+++..+|+.-.-.+.+.|.++  ++++.++++.+.. .-|...|+.-.....+.+.    
T Consensus       121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~  199 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD  199 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred             cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence               67888888888765  4667888888888888888888  8889888888764 2355666665555666655    


Q ss_pred             --HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChHHHH
Q 007998          328 --VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE-ACDIVKSV-SM----GTDMVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       328 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~  399 (582)
                        ++++.+.++.++... +-|...|+-+-..+.+.|+..+ +.++.+++ ..    ..+...+..+...+.+.|+.++|.
T Consensus       200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~  278 (306)
T 3dra_A          200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR  278 (306)
T ss_dssp             HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence              777777777777632 3455666666666666666433 44455544 11    236667777777777777777777


Q ss_pred             HHHHHHHH-cCCCCchhHHH
Q 007998          400 IASRKLVE-MGSNNCGDFVL  418 (582)
Q Consensus       400 ~~~~~~~~-~~p~~~~~~~~  418 (582)
                      ++++.+.+ .+|.....+..
T Consensus       279 ~~~~~l~~~~Dpir~~yW~~  298 (306)
T 3dra_A          279 TVYDLLKSKYNPIRSNFWDY  298 (306)
T ss_dssp             HHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHhccChHHHHHHHH
Confidence            77777775 57765554443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.82  E-value=8.6e-08  Score=92.79  Aligned_cols=218  Identities=14%  Similarity=0.044  Sum_probs=142.4

Q ss_pred             CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007998          187 GNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGH-LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF  265 (582)
Q Consensus       187 ~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~  265 (582)
                      .|++++|.+++++..+..  +..          +.. .++++.|...|.++               ...|...|++++|.
T Consensus         4 ~~~~~eA~~~~~~a~k~~--~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL--KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc--ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence            456777777777765542  211          111 35666666665543               45667778888877


Q ss_pred             HHHhccc----CCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhcC---CCCC--HHHHHHHHHHHHcCCCHHHHH
Q 007998          266 EVFDNIK----CRKS----LVTWNTMVMAFAVHGDGPRALELFEQMGRAG---VKPD--DVSYLAALCACNHAGLVDDGV  332 (582)
Q Consensus       266 ~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~  332 (582)
                      ..|.+..    ...+    ..+|+.+...|...|++++|+..|++..+.-   -.|.  ..++..+...|.. |++++|.
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            7776543    0111    3467778888888888888888888765421   1122  2467777778877 9999999


Q ss_pred             HHHHHHhH-c---CCcc-ChhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChHHHH
Q 007998          333 RLFNSMAN-C---GVKP-NMKHYGSVVDLLGRAGRLQEACDIVKSV----SMGTD----MVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       333 ~~~~~~~~-~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~  399 (582)
                      ..|++..+ .   +-.+ ...++..+...|.+.|++++|.+.|++.    +..++    ...+..+...+...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99988876 2   1111 1356777888899999999999888765    11122    235666667777889999999


Q ss_pred             HHHHHHHHcCCCCchh-----HHHHHHHHHhcCCchHHHH
Q 007998          400 IASRKLVEMGSNNCGD-----FVLLSNLYAAYERWDDVGR  434 (582)
Q Consensus       400 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~  434 (582)
                      ..+++.+ ..|....+     ...++.++ ..|+.+.+..
T Consensus       216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            9999999 88864432     33455555 5666655554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.79  E-value=5.8e-08  Score=102.85  Aligned_cols=160  Identities=12%  Similarity=0.034  Sum_probs=125.3

Q ss_pred             cCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCCHHHHHHH
Q 007998          258 CGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGLVDDGVRL  334 (582)
Q Consensus       258 ~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~  334 (582)
                      .|++++|.+.|++..  .+.+...|..+...|...|++++|++.|++..+.  .| +...+..+..++...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999998765  2446788999999999999999999999999875  44 467888899999999999999999


Q ss_pred             HHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcC
Q 007998          335 FNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY---GDVEMAEIASRKLVEMG  409 (582)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~  409 (582)
                      +++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+...   |++++|.+.++++++.+
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            99999843 335678888999999999999999999886 3344 678899999999999   99999999999999999


Q ss_pred             CCCchhHHHHH
Q 007998          410 SNNCGDFVLLS  420 (582)
Q Consensus       410 p~~~~~~~~l~  420 (582)
                      |.+...|..++
T Consensus       159 p~~~~~~~~l~  169 (568)
T 2vsy_A          159 VGAVEPFAFLS  169 (568)
T ss_dssp             CCCSCHHHHTT
T ss_pred             CcccChHHHhC
Confidence            99888887776

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.79  E-value=3.7e-08  Score=86.70  Aligned_cols=157  Identities=9%  Similarity=-0.010  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC
Q 007998          248 CNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHA  325 (582)
Q Consensus       248 ~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~  325 (582)
                      ...+...+.+.|++++|...|++..  .+.+...|..+...|...|++++|+..|++....  .|+...+ .+...    
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~----   81 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAK----   81 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHH----
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHH----
Confidence            3344555556666666666665543  1234455555555566666666666655555432  2222111 11100    


Q ss_pred             CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 007998          326 GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASR  403 (582)
Q Consensus       326 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~  403 (582)
                                                  +. +...+...+|.+.+++. ...| +...+..+...+...|++++|...++
T Consensus        82 ----------------------------~~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  132 (176)
T 2r5s_A           82 ----------------------------LE-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW  132 (176)
T ss_dssp             ----------------------------HH-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ----------------------------HH-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence                                        00 01111112344455443 2344 57888888889999999999999999


Q ss_pred             HHHHcCCCC--chhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          404 KLVEMGSNN--CGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       404 ~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      ++++.+|+.  +..+..++.+|...|+.++|...+++..
T Consensus       133 ~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al  171 (176)
T 2r5s_A          133 NILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL  171 (176)
T ss_dssp             HHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            999999864  5588899999999999999998888654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.78  E-value=8.5e-08  Score=101.57  Aligned_cols=148  Identities=10%  Similarity=-0.081  Sum_probs=107.8

Q ss_pred             cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 007998          223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELF  300 (582)
Q Consensus       223 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~  300 (582)
                      .|++++|...++++++.. +.+...+..+...|.+.|++++|.+.|++..  .+.+...|..+...|...|++++|++.|
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            478889999999888764 3357888899999999999999999998764  2446788999999999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc---CCHHHHHHHHHhC
Q 007998          301 EQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA---GRLQEACDIVKSV  373 (582)
Q Consensus       301 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~  373 (582)
                      ++..+.. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+...|...   |++++|.+.+++.
T Consensus        81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            9988752 2345688888899999999999999999998843 23567778888899999   9999999998876

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.78  E-value=2.2e-05  Score=80.98  Aligned_cols=182  Identities=9%  Similarity=-0.081  Sum_probs=103.1

Q ss_pred             CCHHHHHHHHhcCC--CCChhHHHHHHHHHHcCCC-chHHHHHHHHHHhC-CCCC-ChhHHHHHHHHHH----hcCChHH
Q 007998           56 NELAYAHALFRQIN--APSTNDFNAVLRGLAHSSK-PTNAVLWYRQMLRG-SHRS-DALTCSFALKACA----RVLALFE  126 (582)
Q Consensus        56 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~~~~~ll~~~~----~~~~~~~  126 (582)
                      |+++.++.+|++..  .|++..|...+....+.++ .+....+|+..+.. |..| +...|..-+..+.    ..++++.
T Consensus        28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            67889999998854  4799999988887776653 45567788877654 4333 4456666555433    2456888


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHh-------------cCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCC
Q 007998          127 TLQIHSHVLRHGFLADALLGTTLLDVYAK-------------VGEIVSAKKVFDEMG----VRDIASWNALIAGLAQGNL  189 (582)
Q Consensus       127 a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------------~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~  189 (582)
                      ++.+|+.+++.....-..+|......-..             .+.+..|+.+++.+.    ..+...|...+.--..++.
T Consensus       108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~  187 (493)
T 2uy1_A          108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM  187 (493)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence            99999999874222112233322221111             111222333332221    1133455554443222211


Q ss_pred             -------hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc
Q 007998          190 -------ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE  239 (582)
Q Consensus       190 -------~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~  239 (582)
                             .+.+..+|++++...  +.+...|...+.-+.+.|+.+.|..++++.+..
T Consensus       188 ~~~~~~~~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          188 KLGGRPHESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence                   234566777766653  455666666666666777777777777777776

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.78  E-value=1.2e-07  Score=102.47  Aligned_cols=169  Identities=10%  Similarity=-0.026  Sum_probs=109.6

Q ss_pred             HhcCChHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhC
Q 007998          119 ARVLALFETLQIHSHVL--------RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQG  187 (582)
Q Consensus       119 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~  187 (582)
                      ...|++++|.+.++.++        +.. +.+...+..+...|.+.|++++|.+.|++..   ..+...|+.+...|.+.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            56677777777777776        332 3345566667777777777777777777654   23566777777777777


Q ss_pred             CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007998          188 NLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV  267 (582)
Q Consensus       188 g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~  267 (582)
                      |++++|++.|++..+..  +.+...+..+..++.+.|++++ .+.++++++.... +...+..+..+|.+.|++++|.+.
T Consensus       481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777777777777664  4456667777777777777777 7777777766432 556666777777777777777777


Q ss_pred             Hhccc-CCC-CHHHHHHHHHHHHhCCC
Q 007998          268 FDNIK-CRK-SLVTWNTMVMAFAVHGD  292 (582)
Q Consensus       268 ~~~~~-~~~-~~~~~~~li~~~~~~g~  292 (582)
                      |++.. ..| +...|..+..++...++
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccCC
Confidence            77654 223 24455555555544443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.74  E-value=3.9e-08  Score=83.84  Aligned_cols=97  Identities=11%  Similarity=-0.002  Sum_probs=85.1

Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..|+++++++|+++.+|..++.+|.
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            456667777888889999999888876 3445 78899999999999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHhCC
Q 007998          425 AYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       425 ~~g~~~~a~~~~~~m~~~~  443 (582)
                      ..|++++|...+++..+..
T Consensus       116 ~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            9999999999999888754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.73  E-value=3.2e-07  Score=80.64  Aligned_cols=155  Identities=14%  Similarity=0.002  Sum_probs=98.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-Hh
Q 007998          146 GTTLLDVYAKVGEIVSAKKVFDEMGV---RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA-CG  221 (582)
Q Consensus       146 ~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a-~~  221 (582)
                      ...+...+.+.|++++|...|++...   .+...|..+...+.+.|++++|+..|++.....   |+...+...... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHHH
Confidence            44556667777777777777777653   356677777777777888888888777776553   344333222111 11


Q ss_pred             ccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC---HHHHHHHHHHHHhCCChhHHH
Q 007998          222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS---LVTWNTMVMAFAVHGDGPRAL  297 (582)
Q Consensus       222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~---~~~~~~li~~~~~~g~~~~A~  297 (582)
                      ..+....+...+++.++... .+...+..+...|.+.|++++|...|+++. ..|+   ...+..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            22233345666777666542 256677777777777777777777777654 2232   446777777777777777777


Q ss_pred             HHHHHHH
Q 007998          298 ELFEQMG  304 (582)
Q Consensus       298 ~~~~~m~  304 (582)
                      ..|++..
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.73  E-value=5.1e-07  Score=81.74  Aligned_cols=137  Identities=9%  Similarity=-0.044  Sum_probs=98.2

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007998          177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA  256 (582)
Q Consensus       177 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~  256 (582)
                      ++.+...|.+.|++++|+..|++..+..  |.+...+..+..++...|++++|...++++++..+ .+...+..+...|.
T Consensus        57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~  133 (208)
T 3urz_A           57 ATELALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence            3457777888888888888888888775  56777888888888888888888888888888753 35777778888776


Q ss_pred             hcCC--HHHHHHHHhcccCCCCHH--HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 007998          257 KCGL--LDKAFEVFDNIKCRKSLV--TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAAL  319 (582)
Q Consensus       257 ~~g~--~~~A~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll  319 (582)
                      ..|+  .+.+...|.... .|+..  .|..+..++...|++++|+..|++..+  ..|+......+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~  197 (208)
T 3urz_A          134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD  197 (208)
T ss_dssp             HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence            6554  455677777766 55543  344456667778899999999999886  467765544433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.73  E-value=5.7e-07  Score=85.99  Aligned_cols=156  Identities=12%  Similarity=-0.003  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHH-HHHHHH
Q 007998          144 LLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTV-LGALAA  219 (582)
Q Consensus       144 ~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~-~~ll~a  219 (582)
                      ..+..+...+.+.|++++|...|++..   ..+...+..+...+.+.|++++|+..|++....   .|+.... ......
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~~~~  194 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVAQIE  194 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHHHHH
Confidence            333444444444444444444444432   123344444444445555555555554444333   2222211 111122


Q ss_pred             HhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCCC---HHHHHHHHHHHHhCCChhH
Q 007998          220 CGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKS---LVTWNTMVMAFAVHGDGPR  295 (582)
Q Consensus       220 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~---~~~~~~li~~~~~~g~~~~  295 (582)
                      +...++.+.|...+++.++.. +.+...+..+...|...|++++|...|.++. ..|+   ...+..++..|...|+.++
T Consensus       195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            334444444444454444443 1234445555555555555555555555443 1121   3445555555555555555


Q ss_pred             HHHHHHHH
Q 007998          296 ALELFEQM  303 (582)
Q Consensus       296 A~~~~~~m  303 (582)
                      |...|++.
T Consensus       274 a~~~~r~a  281 (287)
T 3qou_A          274 LASXYRRQ  281 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.72  E-value=1.1e-07  Score=78.46  Aligned_cols=108  Identities=12%  Similarity=0.013  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQL  391 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~  391 (582)
                      .+......+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++..
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            44555556666666666666666666522 234455556666666666666666666654 2233 56677777888888


Q ss_pred             cCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998          392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNL  422 (582)
Q Consensus       392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  422 (582)
                      .|++++|.+.|+++++++|+++.++..|.++
T Consensus        94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           94 MREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            8888888888888888888887777666554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.70  E-value=5.1e-08  Score=83.06  Aligned_cols=98  Identities=9%  Similarity=-0.018  Sum_probs=84.4

Q ss_pred             ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          346 NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY  423 (582)
Q Consensus       346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  423 (582)
                      +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|+++..+..++.+|
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            4456666778888899999999988876 3344 7888999999999999999999999999999999999999999999


Q ss_pred             HhcCCchHHHHHHHHHHhCC
Q 007998          424 AAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       424 ~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ...|++++|...+++..+..
T Consensus       100 ~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHC
Confidence            99999999999999887643

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.70  E-value=9.3e-08  Score=81.63  Aligned_cols=108  Identities=4%  Similarity=-0.204  Sum_probs=48.3

Q ss_pred             HHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHH
Q 007998          153 YAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG  229 (582)
Q Consensus       153 y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a  229 (582)
                      +...|++++|...|......   +...+..+...|.+.|++++|++.|++.++..  +-+..+|..+..++...|++++|
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchHHH
Confidence            33444444444444444322   12233444444555555555555555544443  33444444444444444444444


Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007998          230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK  263 (582)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~  263 (582)
                      ...++..++.... +..++..+...|.+.|+.++
T Consensus        85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHH
Confidence            4444444443211 33444444444444444433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.70  E-value=9.7e-07  Score=80.18  Aligned_cols=160  Identities=9%  Similarity=-0.001  Sum_probs=89.1

Q ss_pred             ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC----CcHHHHHHHHHHHHcCCCCchhHH
Q 007998          173 DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG----AWKEGDKIHEYIREERLDMNVVVC  248 (582)
Q Consensus       173 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~  248 (582)
                      +..++..+...|...+++++|++.|++..+.|    ++..+..+...+.. +    +.++|...+++..+.|   +...+
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~   88 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE   88 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            44555555555555556666666666555443    23444445555554 4    5666666666665543   44455


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHhcccCCCC----HHHHHHHHHHHHh----CCChhHHHHHHHHHHhcCCCCCHHHHH
Q 007998          249 NAVIDMYAK----CGLLDKAFEVFDNIKCRKS----LVTWNTMVMAFAV----HGDGPRALELFEQMGRAGVKPDDVSYL  316 (582)
Q Consensus       249 ~~li~~y~~----~g~~~~A~~~~~~~~~~~~----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~  316 (582)
                      ..|..+|..    .+++++|.+.|++.....+    ..++..|...|..    .+++++|+..|++..+.  .++...+.
T Consensus        89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~  166 (212)
T 3rjv_A           89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred             HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence            556666655    5666666666665541222    4566666666666    56667777777766654  12233444


Q ss_pred             HHHHHHHcC-C-----CHHHHHHHHHHHhHcC
Q 007998          317 AALCACNHA-G-----LVDDGVRLFNSMANCG  342 (582)
Q Consensus       317 ~ll~a~~~~-g-----~~~~a~~~~~~~~~~~  342 (582)
                      .+...|... |     ++++|...|+...+.|
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            454455432 2     6677777776666644

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.69  E-value=1.1e-06  Score=84.31  Aligned_cols=158  Identities=9%  Similarity=0.004  Sum_probs=108.7

Q ss_pred             HHHHHHhCCChhHHHHHHHHHHhcC-CCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHhHcCC-ccC----hhhHHh
Q 007998          283 MVMAFAVHGDGPRALELFEQMGRAG-VKPDDV----SYLAALCACNHAGLVDDGVRLFNSMANCGV-KPN----MKHYGS  352 (582)
Q Consensus       283 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~  352 (582)
                      .+..+...|++++|..++++..+.. ..|+..    .+..+...+...+++++|...|+++.+... .++    ...++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            3556677777777777777776532 122221    223355556666777888888877776211 222    225677


Q ss_pred             hhhHHhhcCCHHHHHHHHHhC-------CCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhHH
Q 007998          353 VVDLLGRAGRLQEACDIVKSV-------SMG-T-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN------CGDFV  417 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~-------~~~-p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~  417 (582)
                      +...|...|++++|.+.++++       +.. + ...+|..+...|...|++++|...++++++..+..      +.+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            777788888888887777654       111 1 23477888899999999999999999998865322      56889


Q ss_pred             HHHHHHHhcCC-chHHHHHHHHHH
Q 007998          418 LLSNLYAAYER-WDDVGRVRKAMK  440 (582)
Q Consensus       418 ~l~~~~~~~g~-~~~a~~~~~~m~  440 (582)
                      .++.+|.+.|+ +++|...+++..
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999995 599999888765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.68  E-value=2.3e-05  Score=74.82  Aligned_cols=215  Identities=6%  Similarity=-0.056  Sum_probs=132.8

Q ss_pred             cCCCchHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCchHHHHHHHHHH----Hhc-
Q 007998           85 HSSKPTNAVLWYRQMLRGSHRSDAL-TCSFALKACARVL--ALFETLQIHSHVLRHGFLADALLGTTLLDVY----AKV-  156 (582)
Q Consensus        85 ~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~-  156 (582)
                      .....++|+++++.++..  .|+.. .|+.--..+...+  +++++++.++.++...+. +..+|+.--.++    .+. 
T Consensus        45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence            334446888888888874  44443 4666666666777  888888888888887533 445555444444    444 


Q ss_pred             --CCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChh--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC----
Q 007998          157 --GEIVSAKKVFDEMG---VRDIASWNALIAGLAQGNLAS--EAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA----  225 (582)
Q Consensus       157 --g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~----  225 (582)
                        ++++++.++++++.   .+|-.+|+--...+.+.|.++  ++++.++++.+..  +-|...|+.......+.+.    
T Consensus       122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~  199 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATD  199 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchh
Confidence              67777777777664   346667777777777777777  7777777777765  4566667666666655554    


Q ss_pred             --cHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH-HHHHHhccc--C---CCCHHHHHHHHHHHHhCCChhHHH
Q 007998          226 --WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDK-AFEVFDNIK--C---RKSLVTWNTMVMAFAVHGDGPRAL  297 (582)
Q Consensus       226 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~-A~~~~~~~~--~---~~~~~~~~~li~~~~~~g~~~~A~  297 (582)
                        ++++.+.+..++...+. |...|+-+-..+.+.|+..+ +..+.+++.  .   .++...+..+...|.+.|+.++|+
T Consensus       200 ~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~  278 (306)
T 3dra_A          200 NTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR  278 (306)
T ss_dssp             HHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence              56666666666665432 56666666666666665333 333444332  0   224455555555555555666666


Q ss_pred             HHHHHHHh
Q 007998          298 ELFEQMGR  305 (582)
Q Consensus       298 ~~~~~m~~  305 (582)
                      ++++.+.+
T Consensus       279 ~~~~~l~~  286 (306)
T 3dra_A          279 TVYDLLKS  286 (306)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66655543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.68  E-value=2.5e-07  Score=89.53  Aligned_cols=163  Identities=8%  Similarity=-0.064  Sum_probs=81.6

Q ss_pred             cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998          121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM  200 (582)
Q Consensus       121 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  200 (582)
                      .|++++|.+++++..+.... .         .+...++++.|...|++.           ...|...|++++|.+.|.+.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a   62 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE   62 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence            35566666666666553211 0         011135666666665542           45566677777777777665


Q ss_pred             HHcCCC--CC--CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCC---CC--chhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007998          201 KMEGVF--KP--NEVTVLGALAACGHLGAWKEGDKIHEYIREERL---DM--NVVVCNAVIDMYAKCGLLDKAFEVFDNI  271 (582)
Q Consensus       201 ~~~g~~--~p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~  271 (582)
                      .....-  .+  -..+|..+..++...|++++|...+++.++.-.   .+  ...+++.+...|.+ |++++|...|++.
T Consensus        63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A  141 (307)
T 2ifu_A           63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA  141 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            432100  01  123555566666666666666666665543210   01  12344455555555 5555555555543


Q ss_pred             c----CCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998          272 K----CRKS----LVTWNTMVMAFAVHGDGPRALELFEQMGR  305 (582)
Q Consensus       272 ~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (582)
                      .    ...+    ..+++.+...|...|++++|+..|++..+
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  183 (307)
T 2ifu_A          142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS  183 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2    0000    23444555555555555555555555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.67  E-value=3e-06  Score=87.43  Aligned_cols=336  Identities=8%  Similarity=-0.046  Sum_probs=185.0

Q ss_pred             HHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 007998           58 LAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA-LFETLQIHSHVLR  136 (582)
Q Consensus        58 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~  136 (582)
                      ++.|+.+|++..           ..+-. |+++.+..+|++.+..  .|+...|..-++...+.++ .+....+|+.++.
T Consensus        11 i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~   76 (493)
T 2uy1_A           11 LSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLG   76 (493)
T ss_dssp             -CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHH
T ss_pred             hHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            666666666542           11111 7888999999988874  4677788777776665553 3556777777776


Q ss_pred             c-CCC-CchHHHHHHHHHHH----hcCCHHHHHHHHhhcCC-C--Ch-hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 007998          137 H-GFL-ADALLGTTLLDVYA----KVGEIVSAKKVFDEMGV-R--DI-ASWNALIAGLAQGNLASEAVDLFKRMKMEGVF  206 (582)
Q Consensus       137 ~-g~~-~~~~~~~~li~~y~----~~g~~~~A~~~f~~m~~-~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  206 (582)
                      . |.. .+..+|...+..+.    ..++++.+.++|++... |  +. ..|...... .+......+.++..+.      
T Consensus        77 ~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~------  149 (493)
T 2uy1_A           77 QFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDT------  149 (493)
T ss_dssp             HSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHH------
T ss_pred             HcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHH------
Confidence            4 432 35567777666544    24567778888877632 2  11 122222111 1111111122211111      


Q ss_pred             CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--C-----HHHHHHHHhccc--CCCCH
Q 007998          207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG--L-----LDKAFEVFDNIK--CRKSL  277 (582)
Q Consensus       207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~-----~~~A~~~~~~~~--~~~~~  277 (582)
                                      .+.+..|+.++..+...-...+...|...++.-...+  -     .+.+..+|++..  .+.+.
T Consensus       150 ----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~  213 (493)
T 2uy1_A          150 ----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE  213 (493)
T ss_dssp             ----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH
T ss_pred             ----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH
Confidence                            1123334444444332100113335555554432221  1     234556776654  34567


Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-c---C-----C---cc
Q 007998          278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-C---G-----V---KP  345 (582)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~---~-----~---~~  345 (582)
                      ..|-..+.-+.+.|+.++|..+|++....   |+...+..   +|......++   +++.+.+ .   .     .   ..
T Consensus       214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~~~~~~~~~~~~~~~~~  284 (493)
T 2uy1_A          214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRKYSMGEAESAEKVFSKE  284 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHHTC----------CHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHHHHhhccchhhhhcccc
Confidence            77888888888888888888888888876   44432211   1221111111   1222222 1   0     0   01


Q ss_pred             ChhhHHhhhhHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          346 NMKHYGSVVDLLGRAGRLQEACDIVKSVSMG-TDMVLWQTLLGACQL-YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY  423 (582)
Q Consensus       346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  423 (582)
                      ....|...++.+.+.+.++.|.++|++.... .+..+|......-.. .++.+.|..+|+.+++..|+++..+...++..
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            1245666677777778888999998877211 234445432222222 23688999999999888887777667777777


Q ss_pred             HhcCCchHHHHHHHHH
Q 007998          424 AAYERWDDVGRVRKAM  439 (582)
Q Consensus       424 ~~~g~~~~a~~~~~~m  439 (582)
                      .+.|+.+.|+.++++.
T Consensus       365 ~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          365 LRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHTCHHHHHHHHHHS
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            8888889999888876

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.66  E-value=5.3e-07  Score=81.68  Aligned_cols=123  Identities=9%  Similarity=-0.007  Sum_probs=84.9

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 007998          318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDV  395 (582)
Q Consensus       318 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~  395 (582)
                      +...+...|++++|...|++..    .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++
T Consensus        12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A           12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence            3444455566666665555542    344555556666666666666666666554 2222 566777788888888888


Q ss_pred             HHHHHHHHHHHHcCCCCc----------------hhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          396 EMAEIASRKLVEMGSNNC----------------GDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       396 ~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ++|...++++++..|.+.                ..+..++.+|...|++++|...+++..+...
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p  152 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  152 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence            888888888888777766                7888888888888888888888888876543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.64  E-value=1.8e-06  Score=79.20  Aligned_cols=59  Identities=10%  Similarity=-0.133  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 007998          145 LGTTLLDVYAKVGEIVSAKKVFDEMGV--RD----IASWNALIAGLAQGNLASEAVDLFKRMKME  203 (582)
Q Consensus       145 ~~~~li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  203 (582)
                      .+..+...+.+.|++++|...|+++..  |+    ...+..+..+|.+.|++++|++.|++..+.
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   70 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   70 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            344455566667777777777766532  21    235666666777777777777777776655

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.64  E-value=1.1e-06  Score=84.36  Aligned_cols=162  Identities=8%  Similarity=-0.022  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CH----HHHHHHHHHHHcCCCHHHHHHHHHHHhHcC---CccC--hh
Q 007998          279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DD----VSYLAALCACNHAGLVDDGVRLFNSMANCG---VKPN--MK  348 (582)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~---~~~~--~~  348 (582)
                      .+...+..+...|++++|++.+.+..+..... +.    ..+..+...+...|++++|...+++..+..   ..+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            34445556666777777777776665532111 11    122334445566777777777777766511   1111  34


Q ss_pred             hHHhhhhHHhhcCCHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC------Cc
Q 007998          349 HYGSVVDLLGRAGRLQEACDIVKSV-------SMGT--DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN------NC  413 (582)
Q Consensus       349 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~  413 (582)
                      .|+.+...|...|++++|.+.+++.       +..+  ...++..+...|...|++++|...++++++..+.      ..
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            6667777777788888777777654       2111  1257888889999999999999999998876431      15


Q ss_pred             hhHHHHHHHHHhcCCchHH-HHHHHHHH
Q 007998          414 GDFVLLSNLYAAYERWDDV-GRVRKAMK  440 (582)
Q Consensus       414 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~  440 (582)
                      .+|..++.+|.+.|++++| ...+++..
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            6788999999999999999 77677654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.63  E-value=1.7e-07  Score=89.32  Aligned_cols=192  Identities=7%  Similarity=-0.046  Sum_probs=120.4

Q ss_pred             chhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHH
Q 007998          244 NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALC  320 (582)
Q Consensus       244 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~  320 (582)
                      +...+..+...|.+.|++++|...|++..  .+.+...|..+...|...|++++|+..+++..+.  .| +...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            34556666677777777777777777543  2346677777777777777777887777777663  34 3456677777


Q ss_pred             HHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007998          321 ACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~  399 (582)
                      ++...|++++|...|++..+..  |+ ...+...+....+..+...... .......++......+ ..+ ..|+.++|.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~  155 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL  155 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence            7778888888888887777621  21 1112222222222111111111 2222323344443333 222 268899999


Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 007998          400 IASRKLVEMGSNNCGDFVLLSNLYAAY-ERWDDVGRVRKAMKNR  442 (582)
Q Consensus       400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~  442 (582)
                      +.++++++++|++......+...+.+. +++++|.++|....+.
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999998777777777777766 7789999999887653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.62  E-value=2.2e-07  Score=76.63  Aligned_cols=101  Identities=10%  Similarity=0.120  Sum_probs=89.7

Q ss_pred             CccC-hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998          343 VKPN-MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL  419 (582)
Q Consensus       343 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  419 (582)
                      +.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            4454 356677888999999999999999986 4445 788999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCchHHHHHHHHHHhCC
Q 007998          420 SNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       420 ~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      +.+|...|++++|.+.+++..+..
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHC
Confidence            999999999999999999887654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.60  E-value=1e-06  Score=71.64  Aligned_cols=114  Identities=17%  Similarity=0.164  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 007998          313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SM-GTDMVLWQTLLGACQ  390 (582)
Q Consensus       313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~  390 (582)
                      ..+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|...++++ .. ..+..+|..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            344445555555566666666665555521 223445555666666666666666666654 11 236677888888899


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 007998          391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE  427 (582)
Q Consensus       391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  427 (582)
                      ..|++++|...++++++..|.++..+..++.++...|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            9999999999999999999988888888888776554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.58  E-value=9.9e-07  Score=76.08  Aligned_cols=126  Identities=7%  Similarity=0.001  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQL  391 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~  391 (582)
                      .+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+..
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34444555556666666666666665522 224555666666677777777777776654 2223 57788888889999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCchhHHHHHHH--HHhcCCchHHHHHHHHHH
Q 007998          392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNL--YAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~m~  440 (582)
                      .|++++|...++++++.+|.++..+..+..+  +...|++++|...++...
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            9999999999999999999888777544444  778899999999888664

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.57  E-value=4.2e-07  Score=76.62  Aligned_cols=97  Identities=13%  Similarity=-0.031  Sum_probs=82.1

Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            345556677788888899998888876 3344 78888889999999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHhCC
Q 007998          425 AYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       425 ~~g~~~~a~~~~~~m~~~~  443 (582)
                      ..|++++|...+++..+..
T Consensus        98 ~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            9999999999999887543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.56  E-value=1.3e-05  Score=76.75  Aligned_cols=193  Identities=12%  Similarity=-0.061  Sum_probs=132.9

Q ss_pred             CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhH---HHHHHHHHHhcCCHHHHHHHHhcccC-C---CCH--
Q 007998          207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVV---CNAVIDMYAKCGLLDKAFEVFDNIKC-R---KSL--  277 (582)
Q Consensus       207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~~~~-~---~~~--  277 (582)
                      .|+..++..+...+.-.-  +       .+.......+...   +...+..+...|++++|...+++... .   ++.  
T Consensus        43 ~~~~~~l~~i~~~l~~~~--~-------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~  113 (293)
T 3u3w_A           43 YPSMDILQGIAAKLQIPI--I-------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQ  113 (293)
T ss_dssp             CCCHHHHHHHHHHHTCCT--H-------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             CCCHHHHHHHHHHhCcCH--H-------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHH
Confidence            677777766666553221  1       1122212222222   23346778889999999999987651 1   121  


Q ss_pred             --HHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHhH--c---CCcc
Q 007998          278 --VTWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPD----DVSYLAALCACNHAGLVDDGVRLFNSMAN--C---GVKP  345 (582)
Q Consensus       278 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~~~~--~---~~~~  345 (582)
                        ..+..+...+...|++++|+..|++..+... .++    ..+++.+..+|...|++++|..+|+++.+  .   +..+
T Consensus       114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  193 (293)
T 3u3w_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE  193 (293)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchh
Confidence              1333466677778899999999999987322 223    23688888999999999999999999885  1   2222


Q ss_pred             C-hhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHHc
Q 007998          346 N-MKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGTD-MVLWQTLLGACQLYGD-VEMAEIASRKLVEM  408 (582)
Q Consensus       346 ~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~  408 (582)
                      . ..++..+...|.+.|++++|.+.+++.       +..+. ..+|..+..++...|+ +++|.+.+++++++
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            2 346778889999999999999988765       22222 6788889999999995 69999999998764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.55  E-value=2.7e-06  Score=76.91  Aligned_cols=142  Identities=11%  Similarity=-0.080  Sum_probs=89.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCC
Q 007998          146 GTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGA  225 (582)
Q Consensus       146 ~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~  225 (582)
                      +..+...|.+.|++++|...|++...++...|..+...|.+.|++++|++.|++.....  +.+...+..+..++...|+
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHccc
Confidence            44556667777777777777777776677777777777777777777777777777664  4556666677777777777


Q ss_pred             cHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998          226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGR  305 (582)
Q Consensus       226 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (582)
                      +++|...++...+.........+       ...|.         ... +.....|..+...|...|++++|+..|++..+
T Consensus        87 ~~~A~~~~~~al~~~~~~~~~~~-------~~~~~---------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           87 YDLAIKDLKEALIQLRGNQLIDY-------KILGL---------QFK-LFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEEC-------GGGTB---------CCE-EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCccHHHH-------HHhcc---------ccC-ccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            77777777766664322110000       00000         000 11235666677777777777777777777766


Q ss_pred             c
Q 007998          306 A  306 (582)
Q Consensus       306 ~  306 (582)
                      .
T Consensus       150 ~  150 (213)
T 1hh8_A          150 M  150 (213)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.55  E-value=1.1e-06  Score=72.10  Aligned_cols=117  Identities=9%  Similarity=-0.046  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007998          313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQ  390 (582)
Q Consensus       313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~  390 (582)
                      ..+..+...+...|++++|...+++..... +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence            344555555666666666666666665522 224455566666667777777777776654 2223 5778888888999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCch
Q 007998          391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD  430 (582)
Q Consensus       391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  430 (582)
                      ..|++++|...++++++.+|.++..+..++.++...|+++
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999889999999998888753

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.53  E-value=5.7e-07  Score=88.15  Aligned_cols=94  Identities=12%  Similarity=-0.009  Sum_probs=79.9

Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..|+++++++|+++.++..++.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            356777888888888888888888776 3334 68889999999999999999999999999999999999999999999


Q ss_pred             hcCCchHH-HHHHHHHH
Q 007998          425 AYERWDDV-GRVRKAMK  440 (582)
Q Consensus       425 ~~g~~~~a-~~~~~~m~  440 (582)
                      ..|++++| ...++.|.
T Consensus       276 ~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          276 RIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999998 44566553

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.53  E-value=1.1e-06  Score=72.56  Aligned_cols=114  Identities=11%  Similarity=-0.005  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQL  391 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~  391 (582)
                      .+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++. ...| +...|..+...+..
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~   96 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA   96 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            33344444444444444444444444311 113344444555555555555555555543 1122 56778888888888


Q ss_pred             cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998          392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER  428 (582)
Q Consensus       392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  428 (582)
                      .|++++|...++++++.+|.+...+..++.++...|+
T Consensus        97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999888888888888877664

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.52  E-value=4e-06  Score=78.38  Aligned_cols=99  Identities=12%  Similarity=-0.096  Sum_probs=54.2

Q ss_pred             HHHcCCCHHHHHHHHHHHhHcCCccC--hhhHHhhhhHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcC
Q 007998          321 ACNHAGLVDDGVRLFNSMANCGVKPN--MKHYGSVVDLLGRAGRLQEACDIVKSV---SMGTD--MVLWQTLLGACQLYG  393 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g  393 (582)
                      .+.+.+++++|+..|+...... .|.  ...+..+..++.+.|++++|++.|++.   +..|.  ...+.....++...|
T Consensus       144 l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lG  222 (282)
T 4f3v_A          144 VYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQG  222 (282)
T ss_dssp             HHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcC
Confidence            4445555555555554333311 111  123344555566666666666666554   11132  234555666677777


Q ss_pred             ChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998          394 DVEMAEIASRKLVEMGSNNCGDFVLLSN  421 (582)
Q Consensus       394 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~  421 (582)
                      +.++|...|+++...+|+ +.....|.+
T Consensus       223 r~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          223 NESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             CHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            777788888877777776 555555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.49  E-value=4.7e-07  Score=79.47  Aligned_cols=119  Identities=7%  Similarity=0.050  Sum_probs=76.9

Q ss_pred             CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--HHHH
Q 007998          325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGA-CQLYGDV--EMAE  399 (582)
Q Consensus       325 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~~a~  399 (582)
                      .|++++|...++...+.. +.+...+..+...|...|++++|.+.|++. ...| +...|..+... +...|++  ++|.
T Consensus        23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~  101 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR  101 (177)
T ss_dssp             ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence            455555555555555422 223455555666666666666666666554 2222 55666666666 6677777  8888


Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ..++++++.+|.++..+..++.+|...|++++|...+++..+...
T Consensus       102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  146 (177)
T 2e2e_A          102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS  146 (177)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence            888888888888888888888888888888888888887776543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.49  E-value=0.00011  Score=71.10  Aligned_cols=182  Identities=9%  Similarity=0.017  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDM  254 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  254 (582)
                      .++.+-....+.+..++|++++++++...  +-+...|+.--.++...+ .++++..+++.++....+ +..+|+.-...
T Consensus        56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wl  132 (349)
T 3q7a_A           56 AMDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLL  132 (349)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence            34444444455566678888888888775  556666777777777777 488888888888877544 67777777777


Q ss_pred             HHhc-C-CHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChh--------HHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 007998          255 YAKC-G-LLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGP--------RALELFEQMGRAGVKPDDVSYLAALCAC  322 (582)
Q Consensus       255 y~~~-g-~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~  322 (582)
                      +.+. + ++++++++++++.  .+.|..+|+--.-.+.+.|.++        ++++.++++.+.. .-|...|+.....+
T Consensus       133 L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL  211 (349)
T 3q7a_A          133 LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLR  211 (349)
T ss_dssp             HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            6666 6 7788888888775  3456677776666655555555        7888888887753 23556666666666


Q ss_pred             HcCCC-------HHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCC
Q 007998          323 NHAGL-------VDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR  362 (582)
Q Consensus       323 ~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  362 (582)
                      .+.+.       ++++.+++++++... +-|...|+-+-..+.+.|+
T Consensus       212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence            66654       566666666666522 2344555554444544443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.47  E-value=1.7e-06  Score=68.85  Aligned_cols=99  Identities=13%  Similarity=0.028  Sum_probs=85.0

Q ss_pred             ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CchhHHHHHH
Q 007998          346 NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN--NCGDFVLLSN  421 (582)
Q Consensus       346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~  421 (582)
                      +...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|.  ++..+..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            4556777888888899999999888876 2233 6788888999999999999999999999999999  8999999999


Q ss_pred             HHHhc-CCchHHHHHHHHHHhCCC
Q 007998          422 LYAAY-ERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       422 ~~~~~-g~~~~a~~~~~~m~~~~~  444 (582)
                      +|... |++++|.+.++...+...
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhccc
Confidence            99999 999999999998887654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.46  E-value=9.8e-07  Score=79.09  Aligned_cols=82  Identities=12%  Similarity=0.034  Sum_probs=34.8

Q ss_pred             cCCHHHHHH---HHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHhccCCcHH
Q 007998          156 VGEIVSAKK---VFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKME----GVFKPNEVTVLGALAACGHLGAWKE  228 (582)
Q Consensus       156 ~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~pd~~t~~~ll~a~~~~~~~~~  228 (582)
                      .|++++|.+   .+..-+.....+++.+...|...|++++|+..|++....    +..+....++..+...+...|++++
T Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   84 (203)
T 3gw4_A            5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA   84 (203)
T ss_dssp             --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            444555555   333322223344555555555555555555555554431    1001112234444444444455555


Q ss_pred             HHHHHHHHH
Q 007998          229 GDKIHEYIR  237 (582)
Q Consensus       229 a~~~~~~~~  237 (582)
                      |...+.+.+
T Consensus        85 A~~~~~~al   93 (203)
T 3gw4_A           85 ARRCFLEER   93 (203)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            544444433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.46  E-value=8.7e-07  Score=72.79  Aligned_cols=96  Identities=10%  Similarity=0.001  Sum_probs=77.4

Q ss_pred             hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 007998          348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA  425 (582)
Q Consensus       348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  425 (582)
                      ..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34555666777788888888887765 3334 678888888888899999999999999999999888899999999999


Q ss_pred             cCCchHHHHHHHHHHhCC
Q 007998          426 YERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       426 ~g~~~~a~~~~~~m~~~~  443 (582)
                      .|++++|...+++..+..
T Consensus        85 ~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           85 VKEYASALETLDAARTKD  102 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhC
Confidence            999999999888877543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.46  E-value=1e-05  Score=77.44  Aligned_cols=126  Identities=12%  Similarity=0.062  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH------HHHHHHHHHhccCCcHHHHHHHHHHHHcCCC---Cc--
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV------TVLGALAACGHLGAWKEGDKIHEYIREERLD---MN--  244 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~------t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~---~~--  244 (582)
                      .+...+..+...|++++|++.+.+..+...  .+..      .+..+...+...|++++|...+.+..+....   +.  
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcccc--CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            444556677778888888888777766532  2221      1222333344445555555555544432111   00  


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998          245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS-----LVTWNTMVMAFAVHGDGPRALELFEQM  303 (582)
Q Consensus       245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m  303 (582)
                      ..+++.+...|...|++++|...|++..    ..++     ..+|+.+...|...|++++|+..+++.
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            2244444445555555555544444321    0111     124444444444444444444444444

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.44  E-value=6e-06  Score=71.02  Aligned_cols=94  Identities=6%  Similarity=-0.054  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM  254 (582)
Q Consensus       175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  254 (582)
                      ..|..+...+...|++++|+..|.+..+..  +.+..++..+..++...|++++|...+.+.++.. +.+...+..+...
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~   90 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            345555666666666666666666665553  3445555555555555566666666555555543 2234444455555


Q ss_pred             HHhcCCHHHHHHHHhcc
Q 007998          255 YAKCGLLDKAFEVFDNI  271 (582)
Q Consensus       255 y~~~g~~~~A~~~~~~~  271 (582)
                      |.+.|++++|...|++.
T Consensus        91 ~~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           91 NMALGKFRAALRDYETV  107 (166)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHH
Confidence            55555555555555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.43  E-value=3.8e-06  Score=78.51  Aligned_cols=183  Identities=10%  Similarity=-0.030  Sum_probs=134.2

Q ss_pred             hcCCHHHHHHHHhccc--CCCCHHHHHHH-------HHHHHhCCChhHHHHHHHHHHhcCCCCCH---------------
Q 007998          257 KCGLLDKAFEVFDNIK--CRKSLVTWNTM-------VMAFAVHGDGPRALELFEQMGRAGVKPDD---------------  312 (582)
Q Consensus       257 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------  312 (582)
                      ..++.+.|.+.|.+..  .+.....|+.+       ...+...++..+++..+++-.+  +.|+.               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            4678888888887664  24556778777       4555555556666666655443  22221               


Q ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCH----HH
Q 007998          313 -------VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDM----VL  381 (582)
Q Consensus       313 -------~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~~  381 (582)
                             .....+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+.....|+.    ..
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a  173 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA  173 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence                   123345567788999999999998887633  43335555667899999999999999977433433    36


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcC--CC-CchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          382 WQTLLGACQLYGDVEMAEIASRKLVEMG--SN-NCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       382 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      +..+..++...|++++|+..|++.....  |. .+.....++.++.+.|+.++|...|+++....
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            7788899999999999999999998543  43 44577899999999999999999999998754

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.43  E-value=1.5e-06  Score=77.93  Aligned_cols=150  Identities=13%  Similarity=-0.005  Sum_probs=69.3

Q ss_pred             hcCCHHHHHH---HHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHcCCCH
Q 007998          257 KCGLLDKAFE---VFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA----GVKPD-DVSYLAALCACNHAGLV  328 (582)
Q Consensus       257 ~~g~~~~A~~---~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~  328 (582)
                      ..|++++|.+   .+..-+ .....++..+...|...|++++|+..+++....    +..|. ..++..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHP-ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTST-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            3556666666   333222 234455666666666666666666666665441    11111 23455555556666666


Q ss_pred             HHHHHHHHHHhHc-CCcc-C----hhhHHhhhhHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCC
Q 007998          329 DDGVRLFNSMANC-GVKP-N----MKHYGSVVDLLGRAGRLQEACDIVKSV----SMGTD----MVLWQTLLGACQLYGD  394 (582)
Q Consensus       329 ~~a~~~~~~~~~~-~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~  394 (582)
                      ++|...+++..+. .-.+ +    ...+..+...+...|++++|.+.+++.    +..++    ..++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            6666666555541 1011 1    123344444455555555555444432    00011    1223444444555555


Q ss_pred             hHHHHHHHHHHHH
Q 007998          395 VEMAEIASRKLVE  407 (582)
Q Consensus       395 ~~~a~~~~~~~~~  407 (582)
                      +++|...++++++
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.42  E-value=6.9e-07  Score=72.96  Aligned_cols=94  Identities=12%  Similarity=-0.068  Sum_probs=81.9

Q ss_pred             HHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 007998          350 YGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE  427 (582)
Q Consensus       350 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  427 (582)
                      +..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            445667788999999999999876 3345 78889999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHhCC
Q 007998          428 RWDDVGRVRKAMKNRD  443 (582)
Q Consensus       428 ~~~~a~~~~~~m~~~~  443 (582)
                      ++++|...+++..+..
T Consensus       100 ~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A          100 NANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHhC
Confidence            9999999999887654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.41  E-value=0.00022  Score=68.85  Aligned_cols=181  Identities=10%  Similarity=-0.029  Sum_probs=130.7

Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 007998           76 FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVL-ALFETLQIHSHVLRHGFLADALLGTTLLDVYA  154 (582)
Q Consensus        76 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~  154 (582)
                      |+.+-......+..++|+++++.++..++. +...|+.--..+...+ .++++++.++.+++..+ .+..+|+.-..++.
T Consensus        57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~  134 (349)
T 3q7a_A           57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLD  134 (349)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence            344444445556667899999999885432 3345666666666777 59999999999998764 46677877777777


Q ss_pred             hc-C-CHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChh--------HHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 007998          155 KV-G-EIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLAS--------EAVDLFKRMKMEGVFKPNEVTVLGALAACG  221 (582)
Q Consensus       155 ~~-g-~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~  221 (582)
                      +. + +.+++.++++++.+.   |-.+|+--...+.+.|.++        ++++.++++.+..  +-|...|+.....+.
T Consensus       135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~  212 (349)
T 3q7a_A          135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRV  212 (349)
T ss_dssp             HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHT
T ss_pred             HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence            76 6 888999999888654   5677777666666666666        8999999998876  568888888888887


Q ss_pred             ccCC-------cHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 007998          222 HLGA-------WKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL  261 (582)
Q Consensus       222 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~  261 (582)
                      +.+.       ++++.+.....+...+ -|...|+-+-..+.+.|+.
T Consensus       213 ~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          213 SRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             TSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCC
T ss_pred             hccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCC
Confidence            7775       5677777777777653 3677777666666666653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.39  E-value=2.3e-06  Score=75.00  Aligned_cols=127  Identities=9%  Similarity=0.082  Sum_probs=93.8

Q ss_pred             HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhH-HhhcCCH--H
Q 007998          288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDL-LGRAGRL--Q  364 (582)
Q Consensus       288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~  364 (582)
                      ...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ |...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            34677788888888877642 3355677778888888888888888888888732 2345666777777 7788888  8


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998          365 EACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF  416 (582)
Q Consensus       365 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  416 (582)
                      +|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            998888876 3334 577888888999999999999999999999999876543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.39  E-value=7.3e-05  Score=71.87  Aligned_cols=192  Identities=10%  Similarity=-0.001  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC--HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCC-hhHHHHHHH
Q 007998          227 KEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL--LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGD-GPRALELFE  301 (582)
Q Consensus       227 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~-~~~A~~~~~  301 (582)
                      +++..+++.++....+ +..+|+.-...+.+.|+  ++++..+++++.  .+.|..+|+.-...+...|. ++++++.++
T Consensus        91 ~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           91 KAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            4445555555544322 44455544444444442  455555555443  24455555555555555555 355555555


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc-------
Q 007998          302 QMGRAGVKPDDVSYLAALCACNHA--------------GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA-------  360 (582)
Q Consensus       302 ~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------  360 (582)
                      ++.+.. +-|...|+.....+.+.              +.++++.+++....... +-|...|+-+--.+.+.       
T Consensus       170 ~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~  247 (331)
T 3dss_A          170 SLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELS  247 (331)
T ss_dssp             HHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred             HHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccc
Confidence            555542 22333443333332222              23445555555555421 12333333222222222       


Q ss_pred             ----CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998          361 ----GRLQEACDIVKSV-SMGTDMVLWQTLLGA-----CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNL  422 (582)
Q Consensus       361 ----g~~~~A~~~~~~~-~~~p~~~~~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  422 (582)
                          +.++++++.++++ ...||. .|..+..+     ....+..++....+.++.+++|...+-|..+...
T Consensus       248 ~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~  318 (331)
T 3dss_A          248 VEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  318 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence                3456666666655 334442 33322111     1134566677777777777777666555554433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.39  E-value=1.4e-06  Score=74.07  Aligned_cols=107  Identities=11%  Similarity=0.017  Sum_probs=78.3

Q ss_pred             CCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 007998          309 KPDD-VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTL  385 (582)
Q Consensus       309 ~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l  385 (582)
                      .|+. ..+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            4433 345556667777777777777777777632 235566677777788888888888887765 3334 56778888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998          386 LGACQLYGDVEMAEIASRKLVEMGSNNCGDF  416 (582)
Q Consensus       386 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  416 (582)
                      ..++...|++++|...|++++++.|+++...
T Consensus        96 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A           96 AECLLQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence            8899999999999999999999988776553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.38  E-value=1.9e-06  Score=73.28  Aligned_cols=94  Identities=11%  Similarity=-0.024  Sum_probs=47.5

Q ss_pred             hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998          174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID  253 (582)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  253 (582)
                      ...|..+...+.+.|++++|+..|++.....  |.+...|..+..++...|++++|...|++.++..+. +...+..+..
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~  112 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence            3445555555556666666666666555553  344455555555555555555555555555544321 3334444444


Q ss_pred             HHHhcCCHHHHHHHHhc
Q 007998          254 MYAKCGLLDKAFEVFDN  270 (582)
Q Consensus       254 ~y~~~g~~~~A~~~~~~  270 (582)
                      +|.+.|++++|...|++
T Consensus       113 ~~~~lg~~~eA~~~~~~  129 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFEL  129 (151)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            44444444444444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.37  E-value=1.2e-05  Score=65.01  Aligned_cols=60  Identities=13%  Similarity=0.090  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR  237 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~  237 (582)
                      .|..+...+...|++++|++.|+++....  +.+..++..+...+...|++++|..+++++.
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   70 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL   70 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            33444444444444444444444444332  2233333333333444444444444444333

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.37  E-value=1.6e-06  Score=74.95  Aligned_cols=95  Identities=9%  Similarity=0.011  Sum_probs=55.9

Q ss_pred             hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 007998          348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA  425 (582)
Q Consensus       348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  425 (582)
                      ..+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   91 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD   91 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34444455555555555555555543 2223 455566666666666666666666666666666666666666666666


Q ss_pred             cCCchHHHHHHHHHHhC
Q 007998          426 YERWDDVGRVRKAMKNR  442 (582)
Q Consensus       426 ~g~~~~a~~~~~~m~~~  442 (582)
                      .|++++|...+++..+.
T Consensus        92 ~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           92 MADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHh
Confidence            66666666666665543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.34  E-value=4.2e-06  Score=69.55  Aligned_cols=98  Identities=11%  Similarity=0.036  Sum_probs=79.6

Q ss_pred             ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          346 NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY  423 (582)
Q Consensus       346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  423 (582)
                      +...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            4566667777777788888888777765 2233 5778888888889999999999999999999999889999999999


Q ss_pred             HhcCCchHHHHHHHHHHhCC
Q 007998          424 AAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       424 ~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ...|++++|...+++..+..
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHC
Confidence            99999999999998877543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.34  E-value=8e-06  Score=65.39  Aligned_cols=107  Identities=14%  Similarity=0.050  Sum_probs=60.0

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 007998          315 YLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY  392 (582)
Q Consensus       315 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~  392 (582)
                      +..+...+...|++++|...|+...... +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3344444445555555555555554421 123344444555555555555555555543 1222 455666666777777


Q ss_pred             CChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998          393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNL  422 (582)
Q Consensus       393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  422 (582)
                      |++++|...++++++.+|+++..+..+..+
T Consensus        86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             TCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            777777777777777777666665555544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.34  E-value=1.8e-06  Score=82.28  Aligned_cols=49  Identities=18%  Similarity=0.134  Sum_probs=22.9

Q ss_pred             CCChhHHHHHHHHHHhcCCCCCHHHHHHHHH-HHHcC-CCHHHHHHHHHHHhH
Q 007998          290 HGDGPRALELFEQMGRAGVKPDDVSYLAALC-ACNHA-GLVDDGVRLFNSMAN  340 (582)
Q Consensus       290 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~-g~~~~a~~~~~~~~~  340 (582)
                      .|+.++|++.+++..+  ..|+......-+. .+.+. +.++++.++|..+.+
T Consensus       148 ~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          148 AAERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHHHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            4555666666555544  2444432222222 22222 445566666665554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.33  E-value=1.2e-05  Score=65.72  Aligned_cols=92  Identities=11%  Similarity=-0.043  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMY  255 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y  255 (582)
                      .|..+...+...|++++|++.|++.....  +.+...+..+..++...|++++|...+....+.. +.+...+..+...|
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence            34444445555555555555555554442  3344444444444455555555555555444432 11234444444444


Q ss_pred             HhcCCHHHHHHHHhc
Q 007998          256 AKCGLLDKAFEVFDN  270 (582)
Q Consensus       256 ~~~g~~~~A~~~~~~  270 (582)
                      .+.|++++|...|++
T Consensus        91 ~~~~~~~~A~~~~~~  105 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKK  105 (131)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHH
Confidence            444444444444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.33  E-value=3.6e-06  Score=75.35  Aligned_cols=170  Identities=10%  Similarity=-0.020  Sum_probs=98.6

Q ss_pred             HHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH
Q 007998          253 DMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD  330 (582)
Q Consensus       253 ~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~  330 (582)
                      ......|+++++.+.++.-.  .......|..+...+...|++++|+..|++..+.  .|+...+...        ....
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~   81 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD   81 (198)
T ss_dssp             ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH
T ss_pred             hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH
Confidence            33444555666655555332  0123445666666777777777777777776653  1211100000        0000


Q ss_pred             HHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998          331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEM  408 (582)
Q Consensus       331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  408 (582)
                      -.   .       ......+..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...|++++++
T Consensus        82 ~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A           82 KK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             HH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            00   0       001245666777778888888888887765 2233 6788888999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHHhcCCchHHH-HHHHHHHhC
Q 007998          409 GSNNCGDFVLLSNLYAAYERWDDVG-RVRKAMKNR  442 (582)
Q Consensus       409 ~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~  442 (582)
                      +|.++..+..+..++...++.+++. ..++.|...
T Consensus       152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999888877776 555555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.33  E-value=4.3e-06  Score=68.53  Aligned_cols=109  Identities=9%  Similarity=-0.086  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQL  391 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~  391 (582)
                      .+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34444455555666666666666555522 223455566666666666666666666654 2233 56778888888888


Q ss_pred             cCChHHHHHHHHHHHHcC------CCCchhHHHHHHHH
Q 007998          392 YGDVEMAEIASRKLVEMG------SNNCGDFVLLSNLY  423 (582)
Q Consensus       392 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~  423 (582)
                      .|++++|...++++++++      |.++.....+..+.
T Consensus        85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            888888888888888888      76666666555544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.31  E-value=2.7e-06  Score=71.55  Aligned_cols=106  Identities=13%  Similarity=0.044  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQL  391 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~  391 (582)
                      .+..+...+.+.|++++|...|+.+.... +.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++..
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            34445556666777777777777666632 234556666677777777777777777665 2233 56677778888888


Q ss_pred             cCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998          392 YGDVEMAEIASRKLVEMGSNNCGDFVLLS  420 (582)
Q Consensus       392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  420 (582)
                      .|++++|...+++++++.|+++.......
T Consensus        99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~  127 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALAAAQPAHEALAA  127 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence            89999999999999988887766554433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.31  E-value=5.4e-06  Score=66.43  Aligned_cols=97  Identities=12%  Similarity=0.136  Sum_probs=86.6

Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            455667888899999999999999986 3334 78889999999999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHHhCC
Q 007998          425 AYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       425 ~~g~~~~a~~~~~~m~~~~  443 (582)
                      ..|++++|...+++..+..
T Consensus        84 ~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTC
T ss_pred             HHhhHHHHHHHHHHHHHcC
Confidence            9999999999999887654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.30  E-value=1.3e-05  Score=65.92  Aligned_cols=95  Identities=9%  Similarity=-0.085  Sum_probs=51.0

Q ss_pred             hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998          174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID  253 (582)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  253 (582)
                      ...|..+...+.+.|++++|++.|++..+..  +.+...+..+..++...|++++|...++++.+... .+...+..+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~   92 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence            3455555555666666666666666555443  33455555555555555555555555555555432 23444555555


Q ss_pred             HHHhcCCHHHHHHHHhcc
Q 007998          254 MYAKCGLLDKAFEVFDNI  271 (582)
Q Consensus       254 ~y~~~g~~~~A~~~~~~~  271 (582)
                      +|.+.|++++|.+.|++.
T Consensus        93 ~~~~~~~~~~A~~~~~~~  110 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKA  110 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHH
Confidence            555555555555555543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.30  E-value=5.6e-06  Score=71.47  Aligned_cols=107  Identities=14%  Similarity=0.033  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007998          313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQ  390 (582)
Q Consensus       313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~  390 (582)
                      ..+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++.
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            345555556666666666666666666532 224556666777777777777777777665 3334 5788889999999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998          391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLS  420 (582)
Q Consensus       391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  420 (582)
                      ..|++++|...|+++++++|+++..+....
T Consensus        91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            999999999999999999998887655444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.28  E-value=2.1e-06  Score=70.77  Aligned_cols=93  Identities=6%  Similarity=-0.025  Sum_probs=65.1

Q ss_pred             hHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-------hhHHHH
Q 007998          349 HYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC-------GDFVLL  419 (582)
Q Consensus       349 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-------~~~~~l  419 (582)
                      .+..+...|.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++.       .+|..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            3445566666777777777777654 3334 567777777788888888888888888887776543       256667


Q ss_pred             HHHHHhcCCchHHHHHHHHHHh
Q 007998          420 SNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       420 ~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      +.+|...|++++|.+.+++..+
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            7777788888888888776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=7.6e-06  Score=68.81  Aligned_cols=91  Identities=14%  Similarity=0.065  Sum_probs=43.1

Q ss_pred             HHhhhhHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          350 YGSVVDLLGRAGRLQEACDIVKSV-SMGTD----MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       350 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      +..+...+...|++++|.+.|++. ...|+    ...|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus        31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  110 (148)
T 2dba_A           31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE  110 (148)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH
Confidence            333444444444444444444433 22333    3444444444555555555555555555555544445555555555


Q ss_pred             hcCCchHHHHHHHHHH
Q 007998          425 AYERWDDVGRVRKAMK  440 (582)
Q Consensus       425 ~~g~~~~a~~~~~~m~  440 (582)
                      ..|++++|...+++..
T Consensus       111 ~~~~~~~A~~~~~~al  126 (148)
T 2dba_A          111 KLGRLDQAVLDLQRCV  126 (148)
T ss_dssp             HHTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            5555555555554444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.26  E-value=0.00016  Score=69.49  Aligned_cols=181  Identities=13%  Similarity=0.078  Sum_probs=132.7

Q ss_pred             HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-HHHHHHHH
Q 007998          261 LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGD--GPRALELFEQMGRAGVKPDDVSYLAALCACNHAGL-VDDGVRLF  335 (582)
Q Consensus       261 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~  335 (582)
                      ++++..+++.+.  .+.+..+|+.-...+...|+  +++++.+++++.+.. +-|...|+.-.....+.|. ++++.+.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            567777777654  36788999998888888884  899999999999864 3356677777777777887 69999999


Q ss_pred             HHHhHcCCccChhhHHhhhhHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 007998          336 NSMANCGVKPNMKHYGSVVDLLGRA--------------GRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY-------  392 (582)
Q Consensus       336 ~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-------  392 (582)
                      +.+++.. +-|...|+....++.+.              +.++++++.+++. ...| |...|+-+-..+...       
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~  247 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS  247 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence            9999844 34566666555555444              4588899888876 3345 788888666555544       


Q ss_pred             ----CChHHHHHHHHHHHHcCCCCchhHHHHHHH---HHhcCCchHHHHHHHHHHhCC
Q 007998          393 ----GDVEMAEIASRKLVEMGSNNCGDFVLLSNL---YAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       393 ----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~  443 (582)
                          +.++++++.++++++.+|++.-.+..++..   ....|..+++...++++++.+
T Consensus       248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D  305 (331)
T 3dss_A          248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  305 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence                457899999999999999885555444332   224577788888888887644

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=1.9e-05  Score=66.30  Aligned_cols=109  Identities=9%  Similarity=-0.035  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLG  387 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~  387 (582)
                      .+..+...+...|++++|...|++..+.  .|+    ...+..+...|...|++++|.+.+++. ...| +...|..+..
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            3344444444444444444444444431  122    344445555566666666666666544 2223 5677778888


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          388 ACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       388 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ++...|++++|...++++++.+|+++..+..+..+..
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            8888899999999999999999988777766665543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.19  E-value=9.6e-06  Score=67.32  Aligned_cols=99  Identities=4%  Similarity=-0.128  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007998          312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGAC  389 (582)
Q Consensus       312 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~  389 (582)
                      ...+..+...+...|++++|...|+...... +.+...+..+..+|...|++++|...+++. ...| +...|..+..++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            3445555555555556666665555555522 223455555666666666666666666554 2223 566777788888


Q ss_pred             HhcCChHHHHHHHHHHHHcCCC
Q 007998          390 QLYGDVEMAEIASRKLVEMGSN  411 (582)
Q Consensus       390 ~~~g~~~~a~~~~~~~~~~~p~  411 (582)
                      ...|++++|...++++++..|+
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHChh
Confidence            8888888888888888887765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.18  E-value=2.1e-05  Score=76.90  Aligned_cols=31  Identities=6%  Similarity=-0.186  Sum_probs=20.5

Q ss_pred             hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 007998          174 IASWNALIAGLAQGNLASEAVDLFKRMKMEG  204 (582)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  204 (582)
                      ...|..+...|.+.|++++|+..|++.....
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~  177 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL  177 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            3456666666777777777777777766553

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.16  E-value=3.3e-06  Score=75.60  Aligned_cols=118  Identities=12%  Similarity=-0.050  Sum_probs=58.0

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCH----------------
Q 007998          150 LDVYAKVGEIVSAKKVFDEMGVR---DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNE----------------  210 (582)
Q Consensus       150 i~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~----------------  210 (582)
                      +......|+++.+.+.++.....   ....|..+...+.+.|++++|+..|++.....  +.+.                
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~   88 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEI   88 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHH
Confidence            33444556666666666543221   34567777788888888888888888887653  1121                


Q ss_pred             HHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007998          211 VTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDN  270 (582)
Q Consensus       211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~  270 (582)
                      ..+..+..++...|++++|...++..++.. +.+...+..+..+|...|++++|.+.|++
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  147 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYK  147 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            344444444445555555555555444442 12334444444444444444444444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.16  E-value=1.1e-05  Score=82.44  Aligned_cols=94  Identities=12%  Similarity=0.053  Sum_probs=75.4

Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++++|++..++..+..++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  396 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK  396 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            456777888888889999998888876 3334 68889999999999999999999999999999999999999999999


Q ss_pred             hcCCchHHHH-HHHHHH
Q 007998          425 AYERWDDVGR-VRKAMK  440 (582)
Q Consensus       425 ~~g~~~~a~~-~~~~m~  440 (582)
                      ..|+++++.+ .++.|.
T Consensus       397 ~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          397 KAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            9999988764 455554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.14  E-value=1.4e-05  Score=68.79  Aligned_cols=66  Identities=15%  Similarity=0.134  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      +...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+..
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            356788888888999999999999999999999999999999999999999999999998877643

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.13  E-value=5.3e-06  Score=85.33  Aligned_cols=116  Identities=8%  Similarity=0.012  Sum_probs=80.8

Q ss_pred             HHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007998          321 ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMA  398 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a  398 (582)
                      .+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...|..+..++...|++++|
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            3445666666766666666632 223566666777777777777777777655 3334 577788888888888888999


Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHH--HHhcCCchHHHHHHH
Q 007998          399 EIASRKLVEMGSNNCGDFVLLSNL--YAAYERWDDVGRVRK  437 (582)
Q Consensus       399 ~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~  437 (582)
                      ++.++++++.+|+++..+..++.+  +.+.|++++|.+.++
T Consensus        94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999998888888888888888777  778888888888876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.12  E-value=9.9e-06  Score=68.36  Aligned_cols=64  Identities=9%  Similarity=-0.078  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCchhH----HHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          379 MVLWQTLLGACQLYGDVEMAEIASRKLVEM-------GSNNCGDF----VLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       379 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      ...|..+..++...|++++|+..+++++++       +|++...|    ...+.++...|++++|...|++..+.
T Consensus        57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            348999999999999999999999999999       99999999    99999999999999999999988653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.11  E-value=2.8e-06  Score=68.73  Aligned_cols=83  Identities=13%  Similarity=0.044  Sum_probs=54.6

Q ss_pred             cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHH
Q 007998          360 AGRLQEACDIVKSV-SM---GT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR  434 (582)
Q Consensus       360 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  434 (582)
                      .|++++|++.|++. ..   .| +...|..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|..
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            45566666666654 33   23 355666677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhC
Q 007998          435 VRKAMKNR  442 (582)
Q Consensus       435 ~~~~m~~~  442 (582)
                      .+++..+.
T Consensus        83 ~~~~al~~   90 (117)
T 3k9i_A           83 LLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            77766543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.10  E-value=2.5e-05  Score=80.30  Aligned_cols=118  Identities=8%  Similarity=0.012  Sum_probs=69.0

Q ss_pred             HHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCC
Q 007998          251 VIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGL  327 (582)
Q Consensus       251 li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~  327 (582)
                      +...|.+.|++++|.+.|++..  .+.+..+|..+..+|.+.|++++|++.+++..+.  .| +...+..+..++...|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            3344566777777777776543  2345667777777777777777777777777664  33 34566666667777777


Q ss_pred             HHHHHHHHHHHhHcCCccChhhHHhhhhH--HhhcCCHHHHHHHHH
Q 007998          328 VDDGVRLFNSMANCGVKPNMKHYGSVVDL--LGRAGRLQEACDIVK  371 (582)
Q Consensus       328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~  371 (582)
                      +++|.+.|+++.+.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            777777777776622 1122233333333  566666666666666

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.10  E-value=8.7e-06  Score=66.75  Aligned_cols=90  Identities=13%  Similarity=0.078  Sum_probs=60.1

Q ss_pred             hhhHHhhcCCHHHHHHHHHhC-CCCC-CH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---chhHHHHHHHHH
Q 007998          353 VVDLLGRAGRLQEACDIVKSV-SMGT-DM---VLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN---CGDFVLLSNLYA  424 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~  424 (582)
                      +...+.+.|++++|.+.|++. ...| +.   ..+..+..++...|++++|...++++++..|++   +.++..++.+|.
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            444556666666666666654 1122 12   456666677777777777777777777777776   566777777777


Q ss_pred             hcCCchHHHHHHHHHHhC
Q 007998          425 AYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       425 ~~g~~~~a~~~~~~m~~~  442 (582)
                      ..|++++|...++...+.
T Consensus        88 ~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            777777777777776654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.08  E-value=4.6e-05  Score=62.10  Aligned_cols=45  Identities=4%  Similarity=-0.221  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       379 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ..+|..+...+...|++++|...++++++..| ++.....+..+..
T Consensus        79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            55666777777888888888888888888777 5555555555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.08  E-value=2.2e-05  Score=77.68  Aligned_cols=136  Identities=11%  Similarity=0.004  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhH
Q 007998          278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDL  356 (582)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~  356 (582)
                      ..|..+...+.+.|++++|+..|++..+.  .|+..          .....       +...+  ..| +...|..+..+
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~--~~~~~~~~~~nla~~  282 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAK--LQPVALSCVLNIGAC  282 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGG--GHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHH--HHHHHHHHHHHHHHH
Confidence            34666666777777777777777766541  01000          00000       11111  122 35677788888


Q ss_pred             HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHH
Q 007998          357 LGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGR  434 (582)
Q Consensus       357 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~  434 (582)
                      |.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++..+..+..++...++.+++.+
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999876 5555 688899999999999999999999999999999999999999999988888777754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.07  E-value=1.7e-05  Score=62.70  Aligned_cols=95  Identities=19%  Similarity=0.134  Sum_probs=52.9

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhc
Q 007998          317 AALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT---DMVLWQTLLGACQLY  392 (582)
Q Consensus       317 ~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~  392 (582)
                      .+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.+++. ...|   +...|..+...+...
T Consensus        11 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           11 LEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI   89 (112)
T ss_dssp             GHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence            33444444455555555555444421 123344444555555555555555555543 2222   456667777777777


Q ss_pred             -CChHHHHHHHHHHHHcCCCC
Q 007998          393 -GDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       393 -g~~~~a~~~~~~~~~~~p~~  412 (582)
                       |++++|.+.++++++..|.+
T Consensus        90 ~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           90 EGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             SSCSHHHHHHHHHHGGGCCCC
T ss_pred             hCCHHHHHHHHHHHhhcccCC
Confidence             77777777777777777654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.05  E-value=3.5e-05  Score=63.21  Aligned_cols=61  Identities=11%  Similarity=-0.117  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE  238 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~  238 (582)
                      +|..+...+.+.|++++|++.|++.++..  |.+...|..+..++...|++++|...+.+.++
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~   70 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE   70 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34455555555566666666665555543  34445555555555555555555555555443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.05  E-value=8.7e-05  Score=75.11  Aligned_cols=161  Identities=11%  Similarity=-0.047  Sum_probs=87.5

Q ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCC-Cch----hHHHHHHHHHHhcCCHHHHHHHHhccc-------CCC-CHHH
Q 007998          213 VLGALAACGHLGAWKEGDKIHEYIREERLD-MNV----VVCNAVIDMYAKCGLLDKAFEVFDNIK-------CRK-SLVT  279 (582)
Q Consensus       213 ~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~-~~~~  279 (582)
                      +..+...|...|++++|.+.+..+.+.-.. ++.    .+.+.+...+...|+.+.|.+++....       ..+ -..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            444555555555555555555544331100 111    122223333344555666665555432       111 1345


Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHhc--CC--CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhH--cCCc-c-C--hh
Q 007998          280 WNTMVMAFAVHGDGPRALELFEQMGRA--GV--KPD-DVSYLAALCACNHAGLVDDGVRLFNSMAN--CGVK-P-N--MK  348 (582)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~--~~~~-~-~--~~  348 (582)
                      +..+...|...|++++|..++++....  +.  .|. ...+..++..|...|++++|..++++...  ..+. | .  ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            666777777777777777777766542  11  122 23566777777888888888888777665  1111 1 1  24


Q ss_pred             hHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998          349 HYGSVVDLLGRAGRLQEACDIVKSV  373 (582)
Q Consensus       349 ~~~~li~~~~~~g~~~~A~~~~~~~  373 (582)
                      .+..+...+...|++++|...|.+.
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5566667777788888887665443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.05  E-value=6.1e-05  Score=76.28  Aligned_cols=161  Identities=4%  Similarity=-0.146  Sum_probs=90.2

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHhc-CCCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHHhH----cCCccC-hhh
Q 007998          280 WNTMVMAFAVHGDGPRALELFEQMGRA-GVKPDDV----SYLAALCACNHAGLVDDGVRLFNSMAN----CGVKPN-MKH  349 (582)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~~~~----~~~~~~-~~~  349 (582)
                      +..++..|...|++++|.+.+.++... +..++..    ..+.+-..+...|+++.+..+++....    .+..+. ..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            445556666666666666666555431 1111111    122222233345666666666666554    111111 345


Q ss_pred             HHhhhhHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCC----ch
Q 007998          350 YGSVVDLLGRAGRLQEACDIVKSV-------SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG---SNN----CG  414 (582)
Q Consensus       350 ~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~  414 (582)
                      +..|...|...|++++|.+++++.       ..+| ...++..++..|...|++++|...+++++...   +.+    ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            556677777777777777776644       1122 24466677777777888888888877776643   211    23


Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          415 DFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       415 ~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      .+..++..+...|++++|...+....
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            45566666777778888777666553

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.04  E-value=1.7e-05  Score=64.86  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=79.0

Q ss_pred             hhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-------chhHHH
Q 007998          348 KHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN-------CGDFVL  418 (582)
Q Consensus       348 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~  418 (582)
                      ..+..+...+...|++++|...+++. ... .+...|..+...+...|++++|...++++++..|.+       +.++..
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            44556677777888888888888765 222 367788888899999999999999999999988765       778999


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHhC
Q 007998          419 LSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       419 l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      ++.+|...|++++|...+++..+.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            999999999999999999988764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.04  E-value=1.6e-05  Score=64.74  Aligned_cols=96  Identities=7%  Similarity=-0.026  Sum_probs=61.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 007998          316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYG  393 (582)
Q Consensus       316 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g  393 (582)
                      ..+...+.+.|++++|...|+++.+.. +.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            334455666677777777777666632 224556666666777777777777777665 3334 5667777777888888


Q ss_pred             ChHHHHHHHHHHHHcCCCC
Q 007998          394 DVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       394 ~~~~a~~~~~~~~~~~p~~  412 (582)
                      ++++|...++++++.+|.+
T Consensus       100 ~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHhCcCC
Confidence            8888888888888877754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.03  E-value=5e-06  Score=67.19  Aligned_cols=92  Identities=14%  Similarity=0.043  Sum_probs=59.9

Q ss_pred             CCCHHHHHHHHHHHhHcC--CccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 007998          325 AGLVDDGVRLFNSMANCG--VKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEI  400 (582)
Q Consensus       325 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~  400 (582)
                      .|++++|...|++..+.+  -+.+...+..+..+|.+.|++++|.+.|++. ...| +...+..+..++...|++++|..
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            355566666666666522  1123455666666777777777777777665 2233 56777788888888888888888


Q ss_pred             HHHHHHHcCCCCchhH
Q 007998          401 ASRKLVEMGSNNCGDF  416 (582)
Q Consensus       401 ~~~~~~~~~p~~~~~~  416 (582)
                      .++++++..|+++...
T Consensus        83 ~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHhCCCcHHHH
Confidence            8888888888776543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.02  E-value=3.1e-05  Score=65.79  Aligned_cols=135  Identities=14%  Similarity=0.053  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhh
Q 007998          279 TWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPDD----VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSV  353 (582)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  353 (582)
                      ++..+...|...|++++|+..+++..+... .++.    .++..+...+...|++++|...+++..+.            
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------   78 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL------------   78 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence            455566666666666666666666554210 0111    23444444445555555555555444430            


Q ss_pred             hhHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCchhHHHHHHHHHhc
Q 007998          354 VDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGS------NNCGDFVLLSNLYAAY  426 (582)
Q Consensus       354 i~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~  426 (582)
                                      ....+..+ ....+..+...+...|++++|...+++.++..+      .....+..++.+|...
T Consensus        79 ----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~  142 (164)
T 3ro3_A           79 ----------------ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL  142 (164)
T ss_dssp             ----------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc
Confidence                            00001000 134555666677777777777777777766421      1234667788888888


Q ss_pred             CCchHHHHHHHHHHh
Q 007998          427 ERWDDVGRVRKAMKN  441 (582)
Q Consensus       427 g~~~~a~~~~~~m~~  441 (582)
                      |++++|.+.+++..+
T Consensus       143 g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          143 GNHDQAMHFAEKHLE  157 (164)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            888888888876653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.01  E-value=9e-05  Score=60.51  Aligned_cols=101  Identities=13%  Similarity=-0.073  Sum_probs=64.7

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhHcCCccCh---hhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-C---HHHHHHHHHHHH
Q 007998          319 LCACNHAGLVDDGVRLFNSMANCGVKPNM---KHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-D---MVLWQTLLGACQ  390 (582)
Q Consensus       319 l~a~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~---~~~~~~ll~~~~  390 (582)
                      ...+...|++++|...|+.+.+... .+.   ..+..+..+|.+.|++++|.+.+++. ...| +   ...+..+..++.
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            3445556666666666666665221 111   34555666667777777777776654 2223 2   556777778888


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998          391 LYGDVEMAEIASRKLVEMGSNNCGDFVLLS  420 (582)
Q Consensus       391 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  420 (582)
                      ..|++++|...++++++..|+++.......
T Consensus        88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            889999999999999998887765544333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.00  E-value=2e-05  Score=67.70  Aligned_cols=76  Identities=13%  Similarity=-0.009  Sum_probs=60.8

Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-hhHHHHHHH
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNC-GDFVLLSNL  422 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~  422 (582)
                      ...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~  141 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV  141 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            456777888888899999998888776 3344 688899999999999999999999999999999887 444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.97  E-value=0.00048  Score=72.13  Aligned_cols=169  Identities=10%  Similarity=0.010  Sum_probs=123.9

Q ss_pred             HHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCC----------hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCC--
Q 007998          261 LDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGD----------GPRALELFEQMGRAGVKPDDVSYLAALCACNHAG--  326 (582)
Q Consensus       261 ~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g--  326 (582)
                      .++|.+.++.+.  .+.+..+|+.--..+...|+          ++++++.++++.+.. +-+...|..-..++.+.+  
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence            456677776554  24455667766666666665          788888888887752 224456766666777777  


Q ss_pred             CHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 007998          327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG-RLQEACDIVKSV-SMGT-DMVLWQTLLGACQLY-----------  392 (582)
Q Consensus       327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------  392 (582)
                      +++++...++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...           
T Consensus       124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~  202 (567)
T 1dce_A          124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (567)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence            6688888888888743 345566666666666777 788888888877 4455 788888877776653           


Q ss_pred             ---CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchH
Q 007998          393 ---GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDD  431 (582)
Q Consensus       393 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  431 (582)
                         +.++++.+.+++++..+|++..+|..+...+.+.++.++
T Consensus       203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence               557999999999999999999999999999999888655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.96  E-value=5.1e-05  Score=77.65  Aligned_cols=125  Identities=10%  Similarity=0.017  Sum_probs=96.5

Q ss_pred             HHHcCCCHHHHHHHHHHHhH-cC--Ccc----ChhhHHhhhhHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 007998          321 ACNHAGLVDDGVRLFNSMAN-CG--VKP----NMKHYGSVVDLLGRAGRLQEACDIVKSV---------SMGTD-MVLWQ  383 (582)
Q Consensus       321 a~~~~g~~~~a~~~~~~~~~-~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~  383 (582)
                      .+...|++++|+.++++..+ ..  +.|    ...+++.|..+|...|++++|+.++++.         +..|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            35578888888888887776 21  112    2456788888888999999998887654         33454 46788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHH-----cCCCCch---hHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          384 TLLGACQLYGDVEMAEIASRKLVE-----MGSNNCG---DFVLLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       384 ~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      .|...|...|++++|+.+++++++     ++|+.|.   ....|..++...+++++|..++.++++.-.+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~  467 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN  467 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999887     4676654   4457888889999999999999999875433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.95  E-value=2.4e-05  Score=76.55  Aligned_cols=148  Identities=13%  Similarity=-0.038  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHH
Q 007998          278 VTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLL  357 (582)
Q Consensus       278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  357 (582)
                      ..|..+...+.+.|++++|+..|++....  .|+...       +...++.+++...+.          ...|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence            34566666777778888888888777653  344332       122233333322211          12556667777


Q ss_pred             hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH-hcCCchHHHH
Q 007998          358 GRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA-AYERWDDVGR  434 (582)
Q Consensus       358 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a~~  434 (582)
                      .+.|++++|++.+++. ...| +...|..+..++...|++++|...|+++++++|+++..+..|..+.. ..+..+.+..
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777765 3334 56777777788888888888888888888888877777777777643 4456677777


Q ss_pred             HHHHHHhCCC
Q 007998          435 VRKAMKNRDV  444 (582)
Q Consensus       435 ~~~~m~~~~~  444 (582)
                      .+++|.....
T Consensus       321 ~~~~~l~~~p  330 (338)
T 2if4_A          321 MYKGIFKGKD  330 (338)
T ss_dssp             ----------
T ss_pred             HHHHhhCCCC
Confidence            7777765443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.94  E-value=4.9e-05  Score=64.56  Aligned_cols=136  Identities=10%  Similarity=-0.016  Sum_probs=90.2

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhcCC-CCC----
Q 007998          245 VVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTMVMAFAVHGDGPRALELFEQMGRAGV-KPD----  311 (582)
Q Consensus       245 ~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----  311 (582)
                      ..++..+...|...|++++|...|++..    ..++    ..++..+...|...|++++|+..+++..+... .++    
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            4577888999999999999999998754    0122    14788899999999999999999999765210 111    


Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 007998          312 DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQ  390 (582)
Q Consensus       312 ~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~  390 (582)
                      ...+..+...+...|++++|...+++..+.                            .++.+..+ ....+..+...+.
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~la~~~~  140 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI----------------------------AQELKDRIGEGRACWSLGNAYT  140 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------------------------HHHccchHhHHHHHHHHHHHHH
Confidence            235566666777778888887777766541                            00011000 1234455556666


Q ss_pred             hcCChHHHHHHHHHHHHc
Q 007998          391 LYGDVEMAEIASRKLVEM  408 (582)
Q Consensus       391 ~~g~~~~a~~~~~~~~~~  408 (582)
                      ..|++++|.+.+++.++.
T Consensus       141 ~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          141 ALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHTCHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHH
Confidence            666777777666666554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.91  E-value=1.1e-05  Score=79.00  Aligned_cols=115  Identities=7%  Similarity=-0.066  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYG  393 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g  393 (582)
                      .+..+...+.+.|++++|...|++....  .|+...       +...|+.+++...+.       ...|..+..++.+.|
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~g  244 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLIKLK  244 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHHHcC
Confidence            4556677788899999999999998873  233221       223344555544432       137888899999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       394 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+...
T Consensus       245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p  295 (338)
T 2if4_A          245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP  295 (338)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999998876543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.85  E-value=2.6e-05  Score=61.76  Aligned_cols=92  Identities=12%  Similarity=-0.060  Sum_probs=74.0

Q ss_pred             ChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------chhHH
Q 007998          346 NMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN------CGDFV  417 (582)
Q Consensus       346 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~  417 (582)
                      +...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|++      ...+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            3455666777888888888888888765 3334 67888899999999999999999999999999988      77788


Q ss_pred             HHHHHHHhcCCchHHHHHHH
Q 007998          418 LLSNLYAAYERWDDVGRVRK  437 (582)
Q Consensus       418 ~l~~~~~~~g~~~~a~~~~~  437 (582)
                      .++.++...|++++|...++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHH
Confidence            88888888888777765543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.82  E-value=3.6e-05  Score=64.93  Aligned_cols=68  Identities=21%  Similarity=0.176  Sum_probs=48.2

Q ss_pred             hHHhhhhHHhhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998          349 HYGSVVDLLGRAGRLQEACDIVKSV--------SMGTD-MVLW----QTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       349 ~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  415 (582)
                      .|..+..++.+.|++++|+..+++.        .+.|+ ...|    .....++...|++++|+..|++++++.|.+...
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            4444444455555555554444432        33674 5678    889999999999999999999999999987654


Q ss_pred             H
Q 007998          416 F  416 (582)
Q Consensus       416 ~  416 (582)
                      +
T Consensus       139 ~  139 (159)
T 2hr2_A          139 T  139 (159)
T ss_dssp             C
T ss_pred             H
Confidence            4

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.80  E-value=6.2e-05  Score=60.29  Aligned_cols=78  Identities=12%  Similarity=0.067  Sum_probs=65.9

Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          365 EACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       365 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      +|.+.|++. ...| +...|..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345555544 3344 67888899999999999999999999999999999999999999999999999999999987653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.79  E-value=0.0001  Score=57.40  Aligned_cols=65  Identities=20%  Similarity=0.139  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      +...|..+...+...|++++|+..|+++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            67889999999999999999999999999999999999999999999999999999999987653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.76  E-value=0.00012  Score=55.47  Aligned_cols=81  Identities=19%  Similarity=0.172  Sum_probs=62.9

Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            345566667777778888887777765 2233 67778888888899999999999999999999988888888888876


Q ss_pred             hcC
Q 007998          425 AYE  427 (582)
Q Consensus       425 ~~g  427 (582)
                      ..|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.69  E-value=0.00027  Score=72.13  Aligned_cols=135  Identities=14%  Similarity=-0.026  Sum_probs=69.0

Q ss_pred             hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007998          174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVID  253 (582)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  253 (582)
                      ...|..+...|.+.|++++|+..|++.++..  +.+.. +           ..+...+    ..    ......|..+..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-~-----------~~~~~~~----~~----~~~~~~~~nla~  325 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYG-L-----------SEKESKA----SE----SFLLAAFLNLAM  325 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCS-C-----------CHHHHHH----HH----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--ccccc-C-----------ChHHHHH----HH----HHHHHHHHHHHH
Confidence            4467778888888888888888888887653  11200 0           0000000    00    001334455555


Q ss_pred             HHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHcCCCHHH
Q 007998          254 MYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD-VSYLAALCACNHAGLVDD  330 (582)
Q Consensus       254 ~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~  330 (582)
                      +|.+.|++++|+..|++..  .+.+...|..+..+|...|++++|+..|++..+.  .|+. ..+..+..++.+.++.++
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555432  1334555555555566666666666666655542  3333 244444445555555554


Q ss_pred             HH
Q 007998          331 GV  332 (582)
Q Consensus       331 a~  332 (582)
                      +.
T Consensus       404 a~  405 (457)
T 1kt0_A          404 RD  405 (457)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.68  E-value=2.3e-05  Score=66.00  Aligned_cols=88  Identities=8%  Similarity=0.048  Sum_probs=70.2

Q ss_pred             HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          357 LGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGD----------VEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       357 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      ..|.+++++|.+.+++. ...| +...|..+..++...++          +++|+..|+++++++|++..+|..++++|.
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            34556777777777765 3344 67777777777766655          469999999999999999999999999999


Q ss_pred             hcC-----------CchHHHHHHHHHHhCCC
Q 007998          425 AYE-----------RWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       425 ~~g-----------~~~~a~~~~~~m~~~~~  444 (582)
                      ..|           ++++|.+.|++..+.+.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence            875           89999999999887654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.58  E-value=0.00044  Score=68.31  Aligned_cols=117  Identities=9%  Similarity=-0.070  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhcCC-------------------CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 007998          146 GTTLLDVYAKVGEIVSAKKVFDEMGV-------------------RDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVF  206 (582)
Q Consensus       146 ~~~li~~y~~~g~~~~A~~~f~~m~~-------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  206 (582)
                      +..+...|.+.|++++|.+.|++...                   .+...|+.+...|.+.|++++|++.+++.++..  
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--  303 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--  303 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Confidence            44455556666666666665554422                   123455555566666666666666666655543  


Q ss_pred             CCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007998          207 KPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAF  265 (582)
Q Consensus       207 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~  265 (582)
                      +.+...+..+..++...|++++|...++++++... .+...+..+...+.+.++.+++.
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555555666666666666655555432 13444445555555554444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.58  E-value=0.00049  Score=52.58  Aligned_cols=69  Identities=6%  Similarity=-0.008  Sum_probs=61.7

Q ss_pred             CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          377 TDMVLWQTLLGACQLYGD---VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       377 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      +|+..|..+..++...++   .++|..+++++++.+|+++.+...++..+...|++++|...|+++.+....
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            478888888888865555   799999999999999999999999999999999999999999999987654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.0004  Score=54.67  Aligned_cols=68  Identities=6%  Similarity=-0.105  Sum_probs=62.5

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          377 TDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       377 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ++...|..+...+...|++++|...++++++.+|.++..+..++.+|...|++++|...+++..+...
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p   69 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS   69 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            35677888999999999999999999999999999999999999999999999999999999887543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.48  E-value=0.0022  Score=53.19  Aligned_cols=110  Identities=12%  Similarity=-0.026  Sum_probs=60.3

Q ss_pred             ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHH
Q 007998          189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAK----CGLLDKA  264 (582)
Q Consensus       189 ~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A  264 (582)
                      ++++|++.|++..+.|  .|+..    +...|...+..++|.+.+++..+.|   +...+..|..+|..    .+++++|
T Consensus        10 d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A           10 DLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            4566666666666655  34433    4444555555566666666665553   44555555555555    5556666


Q ss_pred             HHHHhcccCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhcC
Q 007998          265 FEVFDNIKCRKSLVTWNTMVMAFAV----HGDGPRALELFEQMGRAG  307 (582)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  307 (582)
                      .+.|++.....+..++..|...|..    .++.++|+..|++..+.|
T Consensus        81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6665544323445555555555555    555555555555555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.48  E-value=0.00065  Score=69.42  Aligned_cols=123  Identities=8%  Similarity=-0.110  Sum_probs=83.4

Q ss_pred             HHHhCCChhHHHHHHHHHHhc---CCCCC---H-HHHHHHHHHHHcCCCHHHHHHHHHHHhH-----cCC-ccC-hhhHH
Q 007998          286 AFAVHGDGPRALELFEQMGRA---GVKPD---D-VSYLAALCACNHAGLVDDGVRLFNSMAN-----CGV-KPN-MKHYG  351 (582)
Q Consensus       286 ~~~~~g~~~~A~~~~~~m~~~---g~~p~---~-~t~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~~-~~~-~~~~~  351 (582)
                      .+...|++++|+.++++.++.   -+.|+   . .+++.|..+|...|++++|..++++.++     .|. .|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            355678888888888776542   12232   2 4677788888888888888888877765     121 122 35677


Q ss_pred             hhhhHHhhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998          352 SVVDLLGRAGRLQEACDIVKSV---------SMGTDMV-LWQTLLGACQLYGDVEMAEIASRKLVEM  408 (582)
Q Consensus       352 ~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~  408 (582)
                      .|..+|...|++++|+.++++.         +..|+.. +.+.+-.++...+.++.|+.+++++.+.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888888877654         3344433 3344556667888899999999888763

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.39  E-value=0.002  Score=53.47  Aligned_cols=89  Identities=8%  Similarity=-0.116  Sum_probs=46.3

Q ss_pred             hhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh---
Q 007998          353 VVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL----YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA---  425 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---  425 (582)
                      |..+|...+.+++|.+.|++.-...+...+..|...|..    .+++++|.+.|++..+.+  ++.++..|+.+|..   
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g  108 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKG  108 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCC
Confidence            333444444444455444443112244444455555544    455666666666665542  44555666666665   


Q ss_pred             -cCCchHHHHHHHHHHhCC
Q 007998          426 -YERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       426 -~g~~~~a~~~~~~m~~~~  443 (582)
                       .+++++|...+++..+.|
T Consensus       109 ~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          109 VVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SCCCHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHCC
Confidence             566666666666555544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.37  E-value=0.0007  Score=68.08  Aligned_cols=116  Identities=11%  Similarity=0.131  Sum_probs=84.7

Q ss_pred             hhHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCC---chh
Q 007998          354 VDLLGRAGRLQEACDIVKSV---------SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVE-----MGSNN---CGD  415 (582)
Q Consensus       354 i~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~  415 (582)
                      +.-+.+.|++++|++++++.         +..| -..+++.|..+|...|++++|+.+++++++     ++|+.   ...
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            34455677888888777644         1122 245788889999999999999999999886     34554   457


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 007998          416 FVLLSNLYAAYERWDDVGRVRKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIK  487 (582)
Q Consensus       416 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~  487 (582)
                      +..|+.+|..+|++++|..++++..+--..                  .=...||...++...|.+....|+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence            788999999999999999999887642110                  011368999999888888777665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.24  E-value=0.00028  Score=59.30  Aligned_cols=51  Identities=14%  Similarity=0.102  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCc
Q 007998          363 LQEACDIVKSV-SMGT-DMVLWQTLLGACQLY-----------GDVEMAEIASRKLVEMGSNNC  413 (582)
Q Consensus       363 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~  413 (582)
                      +++|+..|++. .+.| +...|..+..+|...           |++++|++.|+++++++|++.
T Consensus        62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A           62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence            34666666654 4444 456677777777665           589999999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.24  E-value=0.018  Score=60.16  Aligned_cols=170  Identities=8%  Similarity=-0.083  Sum_probs=110.3

Q ss_pred             CCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhc
Q 007998           87 SKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLA----------LFETLQIHSHVLRHGFLADALLGTTLLDVYAKV  156 (582)
Q Consensus        87 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~  156 (582)
                      ...++|++.++++....+. +...|+.--.++...++          ++++.+.++.+++..+ -+..+|+.-..++.+.
T Consensus        43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence            3345778888888875332 33345555555555555          7888888888887753 3666777777777777


Q ss_pred             C--CHHHHHHHHhhcC---CCChhHHHHHHHHHHhCC-ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc-------
Q 007998          157 G--EIVSAKKVFDEMG---VRDIASWNALIAGLAQGN-LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL-------  223 (582)
Q Consensus       157 g--~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~-------  223 (582)
                      |  +++++.+.++++.   .+|-.+|+.-...+.+.| .++++++.++++.+..  +-|...|.....++.+.       
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccccc
Confidence            7  6688888887764   446677877777777777 7788888888887765  55667776666665543       


Q ss_pred             -------CCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCH
Q 007998          224 -------GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLL  261 (582)
Q Consensus       224 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~  261 (582)
                             +.++++.+.+..++...+ -|...|+-+-..+.+.++.
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCC
T ss_pred             ccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCc
Confidence                   334556666666655542 2455555555555555543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.21  E-value=0.00091  Score=53.24  Aligned_cols=79  Identities=16%  Similarity=0.079  Sum_probs=47.7

Q ss_pred             HHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 007998          331 GVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEM  408 (582)
Q Consensus       331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  408 (582)
                      +...|++..+.. +.+...+..+...|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...++++++.
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344444444421 223445555666666666666666666554 2223 4666777777777777888888888777777


Q ss_pred             CC
Q 007998          409 GS  410 (582)
Q Consensus       409 ~p  410 (582)
                      .|
T Consensus        83 ~~   84 (115)
T 2kat_A           83 AQ   84 (115)
T ss_dssp             HH
T ss_pred             cc
Confidence            65

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.20  E-value=0.0034  Score=47.01  Aligned_cols=79  Identities=13%  Similarity=0.036  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          175 ASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDM  254 (582)
Q Consensus       175 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  254 (582)
                      ..|..+...+.+.|++++|+..|++..+..  +.+...+..+..++...|++++|...+++..+... .+...+..+..+
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~   86 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence            344455555555555555555555555443  33444555555555555555555555555554431 133444444444


Q ss_pred             HH
Q 007998          255 YA  256 (582)
Q Consensus       255 y~  256 (582)
                      +.
T Consensus        87 ~~   88 (91)
T 1na3_A           87 KQ   88 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.99  E-value=0.0038  Score=62.62  Aligned_cols=90  Identities=8%  Similarity=0.022  Sum_probs=51.4

Q ss_pred             CCCHHHHHHHHHHHhH-cC--CccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 007998          325 AGLVDDGVRLFNSMAN-CG--VKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV---------SMGTD-MVLWQTLLG  387 (582)
Q Consensus       325 ~g~~~~a~~~~~~~~~-~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~  387 (582)
                      .|++++|..++++..+ ..  +.|+    ..+++.|..+|...|++++|+.++++.         +..|+ ..+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            4566666666666554 11  1121    245556666666666666666665543         23343 345666777


Q ss_pred             HHHhcCChHHHHHHHHHHHH-----cCCCCch
Q 007998          388 ACQLYGDVEMAEIASRKLVE-----MGSNNCG  414 (582)
Q Consensus       388 ~~~~~g~~~~a~~~~~~~~~-----~~p~~~~  414 (582)
                      .|..+|++++|+.+++++++     ++|+.|.
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            77777777777777777665     3555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.95  E-value=0.0077  Score=60.45  Aligned_cols=99  Identities=11%  Similarity=-0.087  Sum_probs=72.9

Q ss_pred             HHHHHcCCCHHHHHHHHHHHhH-cC--CccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 007998          319 LCACNHAGLVDDGVRLFNSMAN-CG--VKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV---------SMGTD-MVL  381 (582)
Q Consensus       319 l~a~~~~g~~~~a~~~~~~~~~-~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~  381 (582)
                      +..+.+.|++++|..++++..+ ..  +.|+    ..+++.|..+|...|++++|+.++++.         +..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            4455667888888888888776 21  2222    356777888888888888888887654         33453 457


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCchhHH
Q 007998          382 WQTLLGACQLYGDVEMAEIASRKLVE-----MGSNNCGDFV  417 (582)
Q Consensus       382 ~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~  417 (582)
                      ++.|...|...|++++|+.+++++++     ++|+.|.+-.
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            88899999999999999999999887     4787765443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.93  E-value=0.0012  Score=66.28  Aligned_cols=83  Identities=16%  Similarity=0.143  Sum_probs=67.3

Q ss_pred             hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCC---chhHHHHH
Q 007998          359 RAGRLQEACDIVKSV---------SMGTD-MVLWQTLLGACQLYGDVEMAEIASRKLVE-----MGSNN---CGDFVLLS  420 (582)
Q Consensus       359 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~  420 (582)
                      ..|++++|+.++++.         +..|+ ..+++.|..+|...|++++|+.+++++++     ++|+.   ..+|..|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            346788888887654         23343 46789999999999999999999999887     35554   45788999


Q ss_pred             HHHHhcCCchHHHHHHHHHHh
Q 007998          421 NLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       421 ~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      .+|..+|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999998764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.89  E-value=0.0037  Score=48.26  Aligned_cols=64  Identities=17%  Similarity=0.178  Sum_probs=33.9

Q ss_pred             CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998          276 SLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN  340 (582)
Q Consensus       276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  340 (582)
                      +...|..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|...|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44455555555555555555555555555432 11223455555555555555555555555554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.83  E-value=0.0059  Score=46.73  Aligned_cols=64  Identities=13%  Similarity=0.103  Sum_probs=51.9

Q ss_pred             hhhHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998          353 VVDLLGRAGRLQEACDIVKSV-SMGT-DMV-LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF  416 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  416 (582)
                      ....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...|+++++++|+++..+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            445677888888888888876 3344 566 888888899999999999999999999999887766

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.83  E-value=0.003  Score=52.44  Aligned_cols=104  Identities=10%  Similarity=-0.020  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcC-C-CCchhHHHHHHHHHhcCCchHHHHH
Q 007998          363 LQEACDIVKSV--SMGTDMVLWQTLLGACQLYG---DVEMAEIASRKLVEMG-S-NNCGDFVLLSNLYAAYERWDDVGRV  435 (582)
Q Consensus       363 ~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~  435 (582)
                      +..+.+.|.+.  .-.++..+.-.+..++.+.+   +.+++..+++++.+.+ | .+...+..|+-+|.+.|++++|++.
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            34444444433  12357777777777787777   5668888888888887 6 4566777888888888888888888


Q ss_pred             HHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 007998          436 RKAMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYA  492 (582)
Q Consensus       436 ~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~  492 (582)
                      ++.+.+..                          |+...+......+...+++.|.+
T Consensus        94 ~~~lL~ie--------------------------P~n~QA~~Lk~~ie~~~~kdgl~  124 (152)
T 1pc2_A           94 VRGLLQTE--------------------------PQNNQAKELERLIDKAMKKDGLV  124 (152)
T ss_dssp             HHHHHHHC--------------------------TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcC--------------------------CCCHHHHHHHHHHHHHHHHhhHH
Confidence            88877643                          33445656555666777777764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.79  E-value=0.0031  Score=48.37  Aligned_cols=60  Identities=15%  Similarity=0.187  Sum_probs=54.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCch-hHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          385 LLGACQLYGDVEMAEIASRKLVEMGSNNCG-DFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       385 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ....+...|++++|...++++++.+|.++. .+..++.+|...|++++|...+++..+...
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            455678899999999999999999999999 999999999999999999999999887553

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.75  E-value=0.034  Score=53.60  Aligned_cols=65  Identities=12%  Similarity=0.105  Sum_probs=37.5

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ++.+|..+...+...|+++.|...++++++++| +...|..++.++.-.|++++|...+++....+
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR  340 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            455555555555555666666666666666654 34455566666666666666666665555443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.66  E-value=0.056  Score=59.22  Aligned_cols=131  Identities=15%  Similarity=0.097  Sum_probs=78.2

Q ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCCh
Q 007998          214 LGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG  293 (582)
Q Consensus       214 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~  293 (582)
                      ..++..+.+.|..+.|.++.+.         .   ..-......+|++++|.++.+.+.   +...|..+...+.+.|++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~  697 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNF  697 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCH
Confidence            5555555666666666554321         1   111334566788888888877665   567888888888888888


Q ss_pred             hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC
Q 007998          294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV  373 (582)
Q Consensus       294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  373 (582)
                      +.|.+.|.++..         |..+...+...|+.+...++-+.....|      .++.-..+|.+.|++++|.+++.++
T Consensus       698 ~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          698 KLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            888888887643         2234444444666665555544444332      1223334455667777776666655


Q ss_pred             C
Q 007998          374 S  374 (582)
Q Consensus       374 ~  374 (582)
                      +
T Consensus       763 ~  763 (814)
T 3mkq_A          763 Q  763 (814)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.56  E-value=0.14  Score=55.94  Aligned_cols=155  Identities=13%  Similarity=0.086  Sum_probs=99.9

Q ss_pred             HHHcCCCchHHHH-HHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHH
Q 007998           82 GLAHSSKPTNAVL-WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIV  160 (582)
Q Consensus        82 ~~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~  160 (582)
                      .....+++++|.+ ++..+      |+......++..+.+.|..+.|.++.+.       +.     .-.......|+++
T Consensus       608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~  669 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT  669 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred             HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence            3345778888876 44221      1123346777777888888888765421       11     1134567789999


Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcC
Q 007998          161 SAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREER  240 (582)
Q Consensus       161 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~  240 (582)
                      .|.++.+.+.  +...|..+...+.+.|+++.|.+.|.++..          |..+...+...++.+...++-+.....|
T Consensus       670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            9999987764  567899999999999999999999998742          2334444444666666555555544443


Q ss_pred             CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc
Q 007998          241 LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK  272 (582)
Q Consensus       241 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~  272 (582)
                      .      ++.-..+|.+.|++++|.+++.++.
T Consensus       738 ~------~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          738 K------FNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             C------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             c------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            1      2334445666777777777666554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.55  E-value=0.22  Score=39.84  Aligned_cols=140  Identities=9%  Similarity=0.077  Sum_probs=99.8

Q ss_pred             HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHH
Q 007998          287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQE  365 (582)
Q Consensus       287 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~  365 (582)
                      +.-.|..++..++..+....   .+..-|+.++.-....-+-+-..++++..-+ +++              ..+|++..
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr   79 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS   79 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence            34467777888888777653   2445566666555555555555555555544 332              24566666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       366 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      ....+-.++.  +.......+.....+|+-+.-.+++..++..++.+|.....++++|.+.|+..+|..++++.=++|++
T Consensus        80 Vi~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           80 VVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            6666666542  45556677788899999999999999987777778999999999999999999999999999998875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.45  E-value=0.08  Score=51.04  Aligned_cols=150  Identities=7%  Similarity=-0.008  Sum_probs=82.6

Q ss_pred             CCChhHHHHHHHHHH--hCCC---hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCch
Q 007998          171 VRDIASWNALIAGLA--QGNL---ASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNV  245 (582)
Q Consensus       171 ~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~  245 (582)
                      ..+..+|...+++..  ..+.   ..+|+.+|++.++..  |-....+..+.-++..             ....+.. +.
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~-------------~~~~~~~-~~  254 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIV-------------RHSQHPL-DE  254 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH-------------HHHHSCC-CH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-------------HhccCCC-ch
Confidence            446777777776543  2232   467888888888774  3344555554444430             0011100 00


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhccc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 007998          246 VVCNAVIDMYAKCGLLDKAFEVFDNIK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNH  324 (582)
Q Consensus       246 ~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~  324 (582)
                      .....          +..+.+....+. .+.+..+|.++...+...|++++|+..++++...+  |+...|..+...+.-
T Consensus       255 ~~~~~----------l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~  322 (372)
T 3ly7_A          255 KQLAA----------LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEM  322 (372)
T ss_dssp             HHHHH----------HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred             hhHHH----------HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Confidence            00000          112222111111 24566677766666666677777777777777753  666666666667777


Q ss_pred             CCCHHHHHHHHHHHhHcCCccChhhH
Q 007998          325 AGLVDDGVRLFNSMANCGVKPNMKHY  350 (582)
Q Consensus       325 ~g~~~~a~~~~~~~~~~~~~~~~~~~  350 (582)
                      .|++++|...|++....  .|...+|
T Consensus       323 ~G~~~eA~e~~~~AlrL--~P~~~t~  346 (372)
T 3ly7_A          323 KGMNREAADAYLTAFNL--RPGANTL  346 (372)
T ss_dssp             TTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred             CCCHHHHHHHHHHHHhc--CCCcChH
Confidence            77777777777777763  3444443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.15  E-value=0.31  Score=41.43  Aligned_cols=129  Identities=15%  Similarity=0.146  Sum_probs=85.3

Q ss_pred             HHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 007998          253 DMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGV  332 (582)
Q Consensus       253 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~  332 (582)
                      +...++|+++.|.++-+.+.   +...|..|.......|+++-|.+.|.+...         |..+.-.|...|+.+.-.
T Consensus        13 ~LAL~lg~l~~A~e~a~~l~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKLN---DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHhC---CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            44567888888888877765   677888888888888888888888887643         233444455567776665


Q ss_pred             HHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007998          333 RLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKL  405 (582)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  405 (582)
                      ++-+.....|      -++.-...+.-.|+++++.+++.+.+.-|...      -....+|-.+.|.++.+++
T Consensus        81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence            5555444433      23344455667888899988888876433222      1223466677777776654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.99  E-value=0.024  Score=52.40  Aligned_cols=87  Identities=14%  Similarity=0.143  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCC-chhHHHHHHHHHhc-CCchH
Q 007998          363 LQEACDIVKSV-SMGTD---MVLWQTLLGACQL-----YGDVEMAEIASRKLVEMGSNN-CGDFVLLSNLYAAY-ERWDD  431 (582)
Q Consensus       363 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~  431 (582)
                      ..+|...+++. .+.|+   ...|..|...|..     -|+.++|++.|+++++++|+. ..+++.++..++.. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            34555555554 44565   5678888888877     499999999999999999974 99999999999884 99999


Q ss_pred             HHHHHHHHHhCCCccCCc
Q 007998          432 VGRVRKAMKNRDVKKVPG  449 (582)
Q Consensus       432 a~~~~~~m~~~~~~~~~~  449 (582)
                      +.+.+++.........|+
T Consensus       259 a~~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          259 FDEALDRALAIDPESVPH  276 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSS
T ss_pred             HHHHHHHHHcCCCCCCCC
Confidence            999999998877664443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.94  E-value=0.028  Score=46.62  Aligned_cols=88  Identities=14%  Similarity=-0.021  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhHcCCccChhhHHhhhhHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHHHHHH
Q 007998          329 DDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAG---RLQEACDIVKSV-SMG-T--DMVLWQTLLGACQLYGDVEMAEIA  401 (582)
Q Consensus       329 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~  401 (582)
                      ..+++.|.+..+.+. ++..+.-.+..++.+.+   +++++..++++. ... |  +...+..|.-+|.+.|++++|.+.
T Consensus        15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            344455555444332 45555555566666666   444666666654 212 3  345666777888999999999999


Q ss_pred             HHHHHHcCCCCchhHH
Q 007998          402 SRKLVEMGSNNCGDFV  417 (582)
Q Consensus       402 ~~~~~~~~p~~~~~~~  417 (582)
                      ++++++.+|++..+..
T Consensus        94 ~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           94 VRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHCTTCHHHHH
T ss_pred             HHHHHhcCCCCHHHHH
Confidence            9999999998865443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.93  E-value=0.031  Score=42.37  Aligned_cols=69  Identities=7%  Similarity=-0.026  Sum_probs=51.7

Q ss_pred             ccChhhHHhhhhHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          344 KPNMKHYGSVVDLLGRAGR---LQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       344 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      +.+...+..+..++...++   .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|.+
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3456666667776654444   68888888876 4445 67777778888899999999999999999998873

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.89  E-value=0.05  Score=42.16  Aligned_cols=69  Identities=13%  Similarity=0.024  Sum_probs=48.7

Q ss_pred             HhhhhHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998          351 GSVVDLLGRAGRLQEACDIVKSV-----S----MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL  419 (582)
Q Consensus       351 ~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  419 (582)
                      -.|...+.+.|+++.|...|+..     +    -.+...++..|..++.+.|+++.|...+++++++.|+++.+...+
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~   86 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL   86 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence            34455555555555555555433     0    123567888899999999999999999999999999887665444

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.87  E-value=2.1  Score=44.68  Aligned_cols=251  Identities=9%  Similarity=-0.011  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC
Q 007998          145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG  224 (582)
Q Consensus       145 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~  224 (582)
                      .-+.-+..+.+.+++......+.. +..+...--....+....|+..+|......+-..|  ...+.....++..+.+.|
T Consensus        74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~--~~~p~~c~~l~~~~~~~g  150 (618)
T 1qsa_A           74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG--KSQPNACDKLFSVWRASG  150 (618)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS--SCCCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHCC
Confidence            344455566667777777765555 33344433444555666677666666666665555  333344445555555444


Q ss_pred             CcHHH--HHHHHHHHHcC-----------CCCch-hHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHH---HHHHHHHH
Q 007998          225 AWKEG--DKIHEYIREER-----------LDMNV-VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVT---WNTMVMAF  287 (582)
Q Consensus       225 ~~~~a--~~~~~~~~~~~-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~---~~~li~~~  287 (582)
                      .+...  .+=+..+...|           ++++. .....++..+.+   ...+.......  .++...   +..-+.-+
T Consensus       151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~--~~~~~~~~~~~~~~~rl  225 (618)
T 1qsa_A          151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT--GATDFTRQMAAVAFASV  225 (618)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS--CCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc--CCChhhHHHHHHHHHHH
Confidence            33221  11111111111           11111 122222222221   12222222221  222221   11112223


Q ss_pred             HhCCChhHHHHHHHHHHhcCCCCCHHHH----HHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCH
Q 007998          288 AVHGDGPRALELFEQMGRAGVKPDDVSY----LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL  363 (582)
Q Consensus       288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  363 (582)
                      ++ .+.+.|..+|....... ..+....    ..+.......+...++...+.......  ++.....-.+..-.+.|++
T Consensus       226 ar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~  301 (618)
T 1qsa_A          226 AR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDR  301 (618)
T ss_dssp             HH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCH
T ss_pred             Hh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCH
Confidence            33 37788888888876543 2233222    222223333442445555555544422  3332233344444577899


Q ss_pred             HHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007998          364 QEACDIVKSVSMGT-D-MVLWQTLLGACQLYGDVEMAEIASRKLVE  407 (582)
Q Consensus       364 ~~A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~  407 (582)
                      +.|...|+.|+..+ + ..-.-=+..+....|+.++|..+|+++.+
T Consensus       302 ~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          302 RGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            99999999885433 2 22122234466778899999998888864

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.04  E-value=0.86  Score=36.46  Aligned_cols=85  Identities=7%  Similarity=-0.046  Sum_probs=63.3

Q ss_pred             hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHH
Q 007998          155 KVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHE  234 (582)
Q Consensus       155 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~  234 (582)
                      .||++......+-.+.. +....+..+......|+-++-.+++..+....  +|++.....+.+||.+.|+..++.+++.
T Consensus        73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r~a~eLl~  149 (172)
T 1wy6_A           73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLI  149 (172)
T ss_dssp             GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence            45555555555554432 33455666788888999999999988865443  7889999999999999999999999999


Q ss_pred             HHHHcCCC
Q 007998          235 YIREERLD  242 (582)
Q Consensus       235 ~~~~~~~~  242 (582)
                      ++-+.|++
T Consensus       150 ~AC~kG~k  157 (172)
T 1wy6_A          150 EACKKGEK  157 (172)
T ss_dssp             HHHHTTCH
T ss_pred             HHHHhhhH
Confidence            98888854

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.73  E-value=1.9  Score=39.92  Aligned_cols=113  Identities=12%  Similarity=0.074  Sum_probs=67.1

Q ss_pred             cCCHHHHHHHHhcccCCCCH--HHHHHHHHH-HHhC--CC------hhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHH
Q 007998          258 CGLLDKAFEVFDNIKCRKSL--VTWNTMVMA-FAVH--GD------GPRALELFEQMGRAGVKPD---DVSYLAALCACN  323 (582)
Q Consensus       258 ~g~~~~A~~~~~~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~  323 (582)
                      .|+..+-.+.+.+.. +.|+  ..|..++.+ +...  |.      ...|...+++..+  +.|+   ...|..+...|.
T Consensus       134 ~~~~~~~~~~l~~~~-~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~  210 (301)
T 3u64_A          134 SGDEQRLHKVLSRCT-RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA  210 (301)
T ss_dssp             SSCHHHHHHHHTTCC-GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred             hcchhhHHHHHHHcC-ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence            344444455555554 4443  357666553 3332  32      2456666666665  3566   356777777777


Q ss_pred             cC-----CCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc-CCHHHHHHHHHhC
Q 007998          324 HA-----GLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA-GRLQEACDIVKSV  373 (582)
Q Consensus       324 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~  373 (582)
                      ..     |+.++|.+.|++.++.+..-+..++....+.|++. |+.++|.+.+++.
T Consensus       211 ~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA  266 (301)
T 3u64_A          211 AAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA  266 (301)
T ss_dssp             HSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred             hCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            73     78888888888877733222355666666777663 7777777777654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.39  E-value=3.1e-05  Score=75.99  Aligned_cols=263  Identities=11%  Similarity=0.105  Sum_probs=162.5

Q ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Q 007998          142 DALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG  221 (582)
Q Consensus       142 ~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~  221 (582)
                      .+.+|..|..++.+.+++.+|.+.|-  ...|+..|..+|....+.|.+++-+..+.-.++..   -++..=+.++-+|+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayA  127 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALA  127 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHH
Confidence            34567777777777777777776653  34455667777777777788877777766554442   22233346677777


Q ss_pred             ccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 007998          222 HLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFE  301 (582)
Q Consensus       222 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  301 (582)
                      +.+++.+-.+++       -.||..-...+.+-+...|.++.|.-+|..++      -|..|...+.+.|++.+|.+.-+
T Consensus       128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is------N~akLAstLV~L~~yq~AVdaAr  194 (624)
T 3lvg_A          128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGAR  194 (624)
T ss_dssp             TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC------CCTTTSSSSSSCSGGGSSTTTTT
T ss_pred             hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence            777766544333       23555555667777777777777777777665      13334444555666665554332


Q ss_pred             HHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCC-CCH
Q 007998          302 QMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMG-TDM  379 (582)
Q Consensus       302 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~  379 (582)
                      +      .-+..||-.+-.+|...+.+..|...--.++     ...+....++..|-+.|.+++-+.+++.- +.+ ...
T Consensus       195 K------Ans~ktWKeV~~ACvd~~EfrLAqicGLniI-----vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHm  263 (624)
T 3lvg_A          195 K------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLERAHM  263 (624)
T ss_dssp             T------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCH
T ss_pred             h------cCChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhH
Confidence            2      2345678888888888888776654433333     22233446788888889998888888864 433 477


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHH-cC-CC------CchhHHHHHHHHHhcCCchHHHH
Q 007998          380 VLWQTLLGACQLYGDVEMAEIASRKLVE-MG-SN------NCGDFVLLSNLYAAYERWDDVGR  434 (582)
Q Consensus       380 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~-p~------~~~~~~~l~~~~~~~g~~~~a~~  434 (582)
                      .+++-|.-.|++. ++++-.+.++.... ++ |.      ....|.-+.-.|.+-..|+.|..
T Consensus       264 GmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          264 GMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             HHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            8888888888776 34544444443221 12 21      24456667777777777776653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.25  E-value=2.1  Score=36.25  Aligned_cols=123  Identities=9%  Similarity=-0.007  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998           56 NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL  135 (582)
Q Consensus        56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  135 (582)
                      |+++.|..+.+.+  .+...|..|.....+.|+++-|.+.|.+...         |..+.-.|...|+.+.-..+-+...
T Consensus        19 g~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~iA~   87 (177)
T 3mkq_B           19 GNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNIAQ   87 (177)
T ss_dssp             TCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            8899998888776  4677899999999999999999999988743         4555555666778777666655555


Q ss_pred             HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998          136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM  200 (582)
Q Consensus       136 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  200 (582)
                      ..| .     ++.....+.-.|+++++.++|.+....+..     .......|..+.|.++..++
T Consensus        88 ~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r~~eA-----~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           88 TRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGSLPLA-----YAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTCHHHH-----HHHHHHTTCHHHHHHHHHHT
T ss_pred             HCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCChHHH-----HHHHHHcCcHHHHHHHHHHh
Confidence            554 2     344444566678888888888765442211     11122356666677776655

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.06  E-value=0.22  Score=39.63  Aligned_cols=91  Identities=13%  Similarity=-0.037  Sum_probs=50.0

Q ss_pred             cCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChH
Q 007998          324 HAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQE---ACDIVKSV-SMG-T--DMVLWQTLLGACQLYGDVE  396 (582)
Q Consensus       324 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~  396 (582)
                      ....+..+.+.|......|. ++..+--.+..++.+.....+   +..++++. ... |  .......|.-++.+.|+++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~   91 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE   91 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence            33445555555555554332 555554455566666665554   56666654 222 2  2223344555666777777


Q ss_pred             HHHHHHHHHHHcCCCCchh
Q 007998          397 MAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       397 ~a~~~~~~~~~~~p~~~~~  415 (582)
                      +|.+.++.+++.+|+|..+
T Consensus        92 ~A~~~~~~lL~~eP~n~QA  110 (126)
T 1nzn_A           92 KALKYVRGLLQTEPQNNQA  110 (126)
T ss_dssp             HHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHhCCCCHHH
Confidence            7777777777777766443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.06  E-value=0.49  Score=37.66  Aligned_cols=84  Identities=14%  Similarity=0.069  Sum_probs=47.2

Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHhHcCCcc--ChhhHHhhhhHHhhcCCHHHH
Q 007998          292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDD---GVRLFNSMANCGVKP--NMKHYGSVVDLLGRAGRLQEA  366 (582)
Q Consensus       292 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A  366 (582)
                      ....+.+-|.+....|. |+..+--.+..++.+..+...   ++.+++.+.+.+ .|  .....-.|.-++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence            34444555555544443 555554455556666665554   777777766632 12  223333455667777777777


Q ss_pred             HHHHHhC-CCCC
Q 007998          367 CDIVKSV-SMGT  377 (582)
Q Consensus       367 ~~~~~~~-~~~p  377 (582)
                      .+.++.+ ..+|
T Consensus        94 ~~~~~~lL~~eP  105 (126)
T 1nzn_A           94 LKYVRGLLQTEP  105 (126)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCC
Confidence            7777765 3344

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.82  E-value=2.1  Score=34.65  Aligned_cols=104  Identities=8%  Similarity=-0.079  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-chhHHHHHHHHHhcCCchHHHHHHH
Q 007998          363 LQEACDIVKSV-SMGTDMVLWQTLLGACQLYGD---VEMAEIASRKLVEMGSNN-CGDFVLLSNLYAAYERWDDVGRVRK  437 (582)
Q Consensus       363 ~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~  437 (582)
                      +....+-|.+- ...|+..+--.+..++.+..+   ..+++.+++.+...+|.+ ......|+-++.+.|++++|++..+
T Consensus        22 L~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d  101 (144)
T 1y8m_A           22 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD  101 (144)
T ss_dssp             HHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34444444433 334666665566666666554   457888888888877743 4456678888889999999998888


Q ss_pred             HHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 007998          438 AMKNRDVKKVPGFSYIEVGGVIHKFFTSDKSHVKWREIYEKLDEIMFKIKEYGYA  492 (582)
Q Consensus       438 ~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~  492 (582)
                      .+.+..                          |....+...-..+..+|...|++
T Consensus       102 ~lL~~e--------------------------P~n~QA~~Lk~~Ie~~i~kdGli  130 (144)
T 1y8m_A          102 TLFEHE--------------------------RNNKQVGALKSMVEDKIQKETLK  130 (144)
T ss_dssp             HHHHTC--------------------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHhcC--------------------------CCcHHHHHHHHHHHHHHHHhchh
Confidence            887654                          33445555555566777777764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.70  E-value=0.28  Score=37.71  Aligned_cols=66  Identities=12%  Similarity=-0.077  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          378 DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG-------SNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       378 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      +..-...|...+...|+++.|..-++++++..       +..+..+..|+.+|.+.|++++|...+++..+..
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            44556678888999999999999999998852       3456788999999999999999999999887643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.63  E-value=0.2  Score=53.30  Aligned_cols=54  Identities=17%  Similarity=0.090  Sum_probs=50.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 007998          387 GACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK  440 (582)
Q Consensus       387 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  440 (582)
                      .-|...|+++.|+++.+++...-|.+-.++..|+.+|...|+|+.|+-.++.+.
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            456788999999999999999999999999999999999999999999998874

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.43  E-value=0.00052  Score=67.52  Aligned_cols=257  Identities=13%  Similarity=0.111  Sum_probs=159.1

Q ss_pred             CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007998           56 NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVL  135 (582)
Q Consensus        56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  135 (582)
                      ++++.|...-++...|  ..|..|..+....+...+|++.|-+.      -|+..|..++.++.+.|.+++-...+..+.
T Consensus        39 ~~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR  110 (624)
T 3lvg_A           39 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR  110 (624)
T ss_dssp             CCSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred             cccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            4555555555555444  46888999998888888888776432      255678888999989999888888776665


Q ss_pred             HcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC-----------
Q 007998          136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEG-----------  204 (582)
Q Consensus       136 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------  204 (582)
                      +.  ..++.+=+.|+-+|++.+++.+-++++.   .||+.-...+..-|...|.++.|.-+|..+-.-.           
T Consensus       111 k~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~  185 (624)
T 3lvg_A          111 KK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE  185 (624)
T ss_dssp             TT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred             HH--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            55  3355667788999999988777655443   2444444455555666666666555554431100           


Q ss_pred             --------CCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CC
Q 007998          205 --------VFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CR  274 (582)
Q Consensus       205 --------~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~  274 (582)
                              -...++.||-.+-.+|...+.+..|...--.++-..     .-...++..|-+.|.+++-+.+++.-.  .+
T Consensus       186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglEr  260 (624)
T 3lvg_A          186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLER  260 (624)
T ss_dssp             GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTT
T ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Confidence                    002345678888888888887776654443333211     112245666788888888888887533  25


Q ss_pred             CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 007998          275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNS  337 (582)
Q Consensus       275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~  337 (582)
                      .-...++-|.-.|++- ++++-.+.++..-.   +.|   .-.++++|.+...|.++.-++..
T Consensus       261 AHmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~~  316 (624)
T 3lvg_A          261 AHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYDK  316 (624)
T ss_dssp             CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHhc
Confidence            5677788887777765 34554444433211   111   12356677777777666655543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.82  E-value=1.4  Score=36.16  Aligned_cols=96  Identities=13%  Similarity=0.115  Sum_probs=51.4

Q ss_pred             CCCChhHHHHHHHHHHcCCCc------hHHHHHHHHHHhCCCCCChh----HHHHHHHHH---HhcCChHHHHHHHHHHH
Q 007998           69 NAPSTNDFNAVLRGLAHSSKP------TNAVLWYRQMLRGSHRSDAL----TCSFALKAC---ARVLALFETLQIHSHVL  135 (582)
Q Consensus        69 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~---~~~~~~~~a~~~~~~~~  135 (582)
                      .+.|..+|-..+...-+.|++      ++.+++|++.... ++|+..    .|..+.--|   ...+++++|+++|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            356788888888888888888      7777888877664 555431    122222111   12355666666666665


Q ss_pred             HcCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 007998          136 RHGFLADALLGTTLLDVYAKVGEIVSAKKVF  166 (582)
Q Consensus       136 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f  166 (582)
                      +.+-.. ..+|......=.+.|++..|++++
T Consensus        88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkIL  117 (161)
T 4h7y_A           88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLL  117 (161)
T ss_dssp             HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhHHH-HHHHHHHHHHHHHcccHHHHHHHH
Confidence            542121 333433333333444444444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.42  E-value=1.3  Score=36.34  Aligned_cols=54  Identities=15%  Similarity=0.045  Sum_probs=37.3

Q ss_pred             CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998          361 GRLQEACDIVKSV---SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       361 g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  415 (582)
                      ++.++|.++|+.+   ..+- ..+|-....--.++|++..|.+++.+.+.+.|.+...
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            4555555555544   1111 6677777777788999999999999999998865443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=89.99  E-value=24  Score=38.53  Aligned_cols=304  Identities=13%  Similarity=0.044  Sum_probs=158.3

Q ss_pred             HHHHHHHHcCCCchHH-HHH-HHHHHhCCCCCChhHHHHHH-HHHHhcCChHHHHHHHHHHHHcC--CCCchHHHHHHHH
Q 007998           77 NAVLRGLAHSSKPTNA-VLW-YRQMLRGSHRSDALTCSFAL-KACARVLALFETLQIHSHVLRHG--FLADALLGTTLLD  151 (582)
Q Consensus        77 ~~li~~~~~~g~~~~A-~~~-~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~  151 (582)
                      .++..++...|-..+. +.. ..++-+.  + +..-+..+. -+....|+.++++++++..+..+  -.+.......+.-
T Consensus       343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~--~-~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaL  419 (963)
T 4ady_A          343 VSVANGFMHAGTTDNSFIKANLPWLGKA--Q-NWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGL  419 (963)
T ss_dssp             HHHHHHHHTTTTCCCHHHHHCHHHHHHC--C-THHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcchhhhcchhhhhcc--c-hHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHH
Confidence            4567788888865544 221 2333332  1 222232222 34567788888888776655421  1222233334444


Q ss_pred             HHHhcCCHHHHHHHHhhcC-CCC----------hhHHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCCHH--HHHHHH
Q 007998          152 VYAKVGEIVSAKKVFDEMG-VRD----------IASWNALIAGLAQGNL-ASEAVDLFKRMKMEGVFKPNEV--TVLGAL  217 (582)
Q Consensus       152 ~y~~~g~~~~A~~~f~~m~-~~~----------~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~pd~~--t~~~ll  217 (582)
                      +...+|..+++..++.... ..+          +..-.++.-|.+-.|. -+++.+.+..+....  .+...  .-.++.
T Consensus       420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd--~~~~~~~AalALG  497 (963)
T 4ady_A          420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND--SATSGEAAALGMG  497 (963)
T ss_dssp             HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC--CHHHHHHHHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC--CHHHHHHHHHHHh
Confidence            5556666666766554432 112          1223334444444443 346677777776543  21111  222334


Q ss_pred             HHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHH-HHH---HHHHHHHhCCCh
Q 007998          218 AACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLV-TWN---TMVMAFAVHGDG  293 (582)
Q Consensus       218 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~---~li~~~~~~g~~  293 (582)
                      ..+...|+.+....++..+.+.. ..++.-..++.-++.-.|+.+.+..+.+.+....+.. -|.   ++..+|+-.|+.
T Consensus       498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~  576 (963)
T 4ady_A          498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN  576 (963)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred             hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence            44567778777777777776542 2122222333333446788888887777765223332 333   344567778887


Q ss_pred             hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCH-HHHHHHHHh
Q 007998          294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL-QEACDIVKS  372 (582)
Q Consensus       294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~  372 (582)
                      ....+++..+.+. ...+......+.-++...|+.+.+.++++.+.+.+ .|.+..-.++.-+....|.. .+|.+.+..
T Consensus       577 ~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~  654 (963)
T 4ady_A          577 SAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP  654 (963)
T ss_dssp             HHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence            6666688888764 12222222222234445666666777777666633 45554444444444444443 577778877


Q ss_pred             CCCCCCHHHHHHHHHH
Q 007998          373 VSMGTDMVLWQTLLGA  388 (582)
Q Consensus       373 ~~~~p~~~~~~~ll~~  388 (582)
                      +...+|..+-..-+.+
T Consensus       655 L~~D~d~~Vrq~Ai~A  670 (963)
T 4ady_A          655 LTKDPVDFVRQAAMIA  670 (963)
T ss_dssp             HHTCSSHHHHHHHHHH
T ss_pred             HccCCCHHHHHHHHHH
Confidence            7445555444333333

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=89.87  E-value=4.5  Score=30.24  Aligned_cols=89  Identities=18%  Similarity=0.141  Sum_probs=66.5

Q ss_pred             cCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998          121 VLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRM  200 (582)
Q Consensus       121 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  200 (582)
                      ...-++|.-+-+.+...+-  ...+--.-+..+.+.|++++|..+.+....||...|-++-..  +.|..+++..-+.++
T Consensus        20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l   95 (116)
T 2p58_C           20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL   95 (116)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence            3456788888888777653  444444445667899999999999999999999999887654  678888888888788


Q ss_pred             HHcCCCCCCHHHHHH
Q 007998          201 KMEGVFKPNEVTVLG  215 (582)
Q Consensus       201 ~~~g~~~pd~~t~~~  215 (582)
                      ...|  .|....|..
T Consensus        96 a~sg--~p~~q~Fa~  108 (116)
T 2p58_C           96 ARSQ--DPRIQTFVN  108 (116)
T ss_dssp             TTCC--CHHHHHHHH
T ss_pred             HhCC--CHHHHHHHH
Confidence            7777  565555543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=89.42  E-value=4.2  Score=30.34  Aligned_cols=88  Identities=16%  Similarity=0.074  Sum_probs=67.2

Q ss_pred             CChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 007998          122 LALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMK  201 (582)
Q Consensus       122 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  201 (582)
                      ..-++|.-+-+.+...+-  ...+--.-+..+.+.|++++|..+.+....||...|-++-.  .+.|..+++..-+.++.
T Consensus        20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la   95 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG   95 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence            456788888887777653  44444444566789999999999999999999999988765  47888888888888888


Q ss_pred             HcCCCCCCHHHHHH
Q 007998          202 MEGVFKPNEVTVLG  215 (582)
Q Consensus       202 ~~g~~~pd~~t~~~  215 (582)
                      ..|  .|....|..
T Consensus        96 ~sg--~p~~q~Fa~  107 (115)
T 2uwj_G           96 GSS--DPALADFAA  107 (115)
T ss_dssp             TCS--SHHHHHHHH
T ss_pred             hCC--CHHHHHHHH
Confidence            877  566555543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=88.86  E-value=4.1  Score=32.51  Aligned_cols=67  Identities=4%  Similarity=-0.107  Sum_probs=43.8

Q ss_pred             CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCC-CchhHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          376 GTDMVLWQTLLGACQLYGD---VEMAEIASRKLVEMGSN-NCGDFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       376 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      .|+..+--.+..++.+..+   ..+++.+++.+.+.+|. ....+..|+-++.+.|++++|++..+.+.+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3555555455555555543   45677777777777763 3445667777788888888888887777654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.43  E-value=16  Score=34.14  Aligned_cols=168  Identities=14%  Similarity=0.097  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHH----HHHHHHhcCCCCCHHHHHHHHHH
Q 007998          246 VVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALE----LFEQMGRAGVKPDDVSYLAALCA  321 (582)
Q Consensus       246 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~~~ll~a  321 (582)
                      ..|.++..=|.+.+++++|.+++..-.            ..+.++|+...|-+    +.+-..+.++++|......++..
T Consensus        34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l  101 (312)
T 2wpv_A           34 QTLRTIANRYVRSKSYEHAIELISQGA------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL  101 (312)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            456667777888899999988875433            23455666655544    34455556788888777777766


Q ss_pred             HHcCCCHH-HHHHHHHHHhH----cC--CccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--
Q 007998          322 CNHAGLVD-DGVRLFNSMAN----CG--VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY--  392 (582)
Q Consensus       322 ~~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~--  392 (582)
                      +.....-+ .=.++.+.+++    .|  ..-+......+...|.+.|++.+|+..|- .+..-|...+..++.-+...  
T Consensus       102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~~~~s~~~~a~~l~~w~~~~~  180 (312)
T 2wpv_A          102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LGTHDSMIKYVDLLWDWLCQVD  180 (312)
T ss_dssp             HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hCCCccHHHHHHHHHHHHHhcC
Confidence            65422111 12334444443    22  12356667778888889999999988776 32112455666666555443  


Q ss_pred             -CChHHHHHHHHHHHHcCCCCchhHH-HHHHHHHhcCCchHHHHHHHHHHh
Q 007998          393 -GDVEMAEIASRKLVEMGSNNCGDFV-LLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       393 -g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                       |...++               ..|. ..+--|.-.|+...|..+++...+
T Consensus       181 ~~~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          181 DIEDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             CCCHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             CCCcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence             333322               2222 222235567889999998887653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.02  E-value=1.8  Score=42.54  Aligned_cols=68  Identities=13%  Similarity=0.009  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCccCC
Q 007998          381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMK-----NRDVKKVP  448 (582)
Q Consensus       381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~  448 (582)
                      ....++.++...|+++++...++++...+|-+...+..|..+|.+.|+..+|.+.|+...     +.|+.|.+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~  245 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  245 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence            345567778889999999999999999999999999999999999999999999888764     35777655

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=86.50  E-value=41  Score=36.72  Aligned_cols=119  Identities=10%  Similarity=0.049  Sum_probs=49.9

Q ss_pred             HHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHH--HHHHHHHhcCCH
Q 007998          184 LAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCN--AVIDMYAKCGLL  261 (582)
Q Consensus       184 ~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~y~~~g~~  261 (582)
                      |.-.|+.+-...++..+.+..  ..+..-+..+.-++...|+.+.+..+.+.+... ..|......  ++.-+|+..|+.
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~  576 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNN  576 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred             hcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCH
Confidence            334455554555555444321  111112222222333556666666665555543 122222221  223345555665


Q ss_pred             HHHHHHHhcccCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 007998          262 DKAFEVFDNIKCRKS--LVTWNTMVMAFAVHGDGPRALELFEQMGR  305 (582)
Q Consensus       262 ~~A~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  305 (582)
                      ....+++..+...++  +...-.+.-++...|+.+.+.++++.+.+
T Consensus       577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~  622 (963)
T 4ady_A          577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK  622 (963)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence            555555555431222  22222222233345555555555554444

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=86.07  E-value=8.9  Score=28.65  Aligned_cols=88  Identities=16%  Similarity=0.146  Sum_probs=66.3

Q ss_pred             CCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 007998          224 GAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQM  303 (582)
Q Consensus       224 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  303 (582)
                      ...++|..|-+.+...+.  ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-.  .+.|..+++...+.++
T Consensus        20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~l   94 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAGL   94 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence            457888888888877653  34444444566789999999999999998 999999987754  4778888888888888


Q ss_pred             HhcCCCCCHHHHHH
Q 007998          304 GRAGVKPDDVSYLA  317 (582)
Q Consensus       304 ~~~g~~p~~~t~~~  317 (582)
                      ..+| .|....|..
T Consensus        95 a~sg-~p~~q~Fa~  107 (115)
T 2uwj_G           95 GGSS-DPALADFAA  107 (115)
T ss_dssp             HTCS-SHHHHHHHH
T ss_pred             HhCC-CHHHHHHHH
Confidence            7765 555555543

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=85.68  E-value=9.5  Score=28.57  Aligned_cols=89  Identities=13%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             cCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 007998          223 LGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQ  302 (582)
Q Consensus       223 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  302 (582)
                      ....++|..|-+.+...+.  ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-.  .+.|..+++...+.+
T Consensus        20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~   94 (116)
T 2p58_C           20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCE--YRLGLGSALESRLNR   94 (116)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence            3467888888888877653  34444444566789999999999999998 999999988754  467888888888878


Q ss_pred             HHhcCCCCCHHHHHH
Q 007998          303 MGRAGVKPDDVSYLA  317 (582)
Q Consensus       303 m~~~g~~p~~~t~~~  317 (582)
                      +..+| .|....|..
T Consensus        95 la~sg-~p~~q~Fa~  108 (116)
T 2p58_C           95 LARSQ-DPRIQTFVN  108 (116)
T ss_dssp             HTTCC-CHHHHHHHH
T ss_pred             HHhCC-CHHHHHHHH
Confidence            77765 555555543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.64  E-value=23  Score=33.07  Aligned_cols=168  Identities=8%  Similarity=0.040  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHH----HHHHHHcCCCCCCHHHHHHHHHHH
Q 007998          145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDL----FKRMKMEGVFKPNEVTVLGALAAC  220 (582)
Q Consensus       145 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~~pd~~t~~~ll~a~  220 (582)
                      .+.++..=|.+.+++++|.+++..-           ...+.+.|+...|-++    .+-..+.++ ++|......++..+
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~-~~~~~~~~rl~~l~  102 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEV-KVDDISVARLVRLI  102 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-CCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Confidence            4566667788889999998876442           3445667777666554    444556677 88888888887777


Q ss_pred             hccCCcH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhC---
Q 007998          221 GHLGAWK-EGDKIHEYIR----EER--LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVH---  290 (582)
Q Consensus       221 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~---  290 (582)
                      .....-+ .=.++...++    +.|  ..-++.....+...|.+.|++.+|+..|-.-. ..|...+..|+.-+...   
T Consensus       103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~  181 (312)
T 2wpv_A          103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDD  181 (312)
T ss_dssp             TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTC
T ss_pred             HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCC
Confidence            6543211 1234444444    332  22367888899999999999999999886332 23455666655544443   


Q ss_pred             CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998          291 GDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN  340 (582)
Q Consensus       291 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  340 (582)
                      |...++--              ..-..++ -|...+++..|..+|+...+
T Consensus       182 ~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          182 IEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             CCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred             CCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence            43333211              1112222 34457888888888887664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.89  E-value=25  Score=39.90  Aligned_cols=163  Identities=11%  Similarity=0.018  Sum_probs=92.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcH
Q 007998          148 TLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWK  227 (582)
Q Consensus       148 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~  227 (582)
                      .++..+.+.+..+.|.++..-.+ .+...--.+...|...|++++|.+.|.+.- .|+ ..+...          .....
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~-~~~~~l----------~~~~~  883 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVL-YSHTSQ----------FAVLR  883 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSC-TTCCCS----------CSSHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhh-cccchh----------hhhhc
Confidence            35555666677777766554443 344444556677888888888888887652 122 111000          00000


Q ss_pred             HHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--C-CCC--H--HHHHHHHHHHHhCCChhHHHH
Q 007998          228 EGDKIHEYIREER--LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--C-RKS--L--VTWNTMVMAFAVHGDGPRALE  298 (582)
Q Consensus       228 ~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~-~~~--~--~~~~~li~~~~~~g~~~~A~~  298 (582)
                      .    ...+....  ...-..-|..++..+.+.|.++.+.++-....  . ..+  .  ..|..+..++...|++++|..
T Consensus       884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~  959 (1139)
T 4fhn_B          884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV  959 (1139)
T ss_dssp             H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred             c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence            0    11111111  11123456677778888888877776554221  1 122  1  258889999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHcCCCHH
Q 007998          299 LFEQMGRAGVKPDDVSYLAALCACNHAGLVD  329 (582)
Q Consensus       299 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~  329 (582)
                      .+-.+.....+  ...+..++...+..|..+
T Consensus       960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             HHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred             HHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence            88877654333  345566666666655544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=83.59  E-value=7  Score=29.40  Aligned_cols=51  Identities=10%  Similarity=0.079  Sum_probs=38.9

Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHH
Q 007998          370 VKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLS  420 (582)
Q Consensus       370 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~  420 (582)
                      +-.+..-|++.+..+.+.+|++.+++..|.++++-+...-.+....|-.++
T Consensus        36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l   86 (109)
T 1v54_E           36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI   86 (109)
T ss_dssp             HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence            334466789999999999999999999999999988776543444555443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=83.28  E-value=31  Score=32.55  Aligned_cols=167  Identities=13%  Similarity=0.092  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHH----HHHHHhcCCCCCHHHHHHHHHHH
Q 007998          247 VCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALEL----FEQMGRAGVKPDDVSYLAALCAC  322 (582)
Q Consensus       247 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~  322 (582)
                      .|.++..=|.+.+++++|.+++..-.            ..+.++|+..-|-++    .+-..+.++++|..+...++..+
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~GA------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~  104 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASVS------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL  104 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            45566777888999999988775433            234455665544433    35555667888887777777766


Q ss_pred             HcCCCHH-HHHHHHHHHhH----cC--CccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 007998          323 NHAGLVD-DGVRLFNSMAN----CG--VKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGDV  395 (582)
Q Consensus       323 ~~~g~~~-~a~~~~~~~~~----~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~  395 (582)
                      .....-+ .=.++.+++++    .|  ..-+......+...|.+.+++.+|+..|- .+..+++..+..++.-+...+. 
T Consensus       105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-  182 (336)
T 3lpz_A          105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-  182 (336)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred             HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence            6544311 11334444443    22  22355666778889999999999998884 3434445677666655544433 


Q ss_pred             HHHHHHHHHHHHcCCCCchhHH-HHHHHHHhcCCchHHHHHHHHHHh
Q 007998          396 EMAEIASRKLVEMGSNNCGDFV-LLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       396 ~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                                    |.....|. ..+--|.-.++...|..+++...+
T Consensus       183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                          22233333 233345677888999888776654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=82.72  E-value=21  Score=38.03  Aligned_cols=53  Identities=13%  Similarity=-0.074  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcC
Q 007998          374 SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYE  427 (582)
Q Consensus       374 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  427 (582)
                      ..+.+..-|..|.....+.+++++|.+.|+..+... -++.+...|+.+|.+.+
T Consensus       608 ~~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~R-Fs~ka~~kLLeiY~~~~  660 (754)
T 4gns_B          608 DEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVAR-FDPVSCQQLLKIYLQPP  660 (754)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-CCHHHHHHHHHHHHSCC
T ss_pred             hcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC
Confidence            445678889999998888999999999999998754 47788889999998766

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=82.40  E-value=5.7  Score=38.81  Aligned_cols=58  Identities=10%  Similarity=-0.046  Sum_probs=35.7

Q ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHH
Q 007998          178 NALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR  237 (582)
Q Consensus       178 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~  237 (582)
                      ..++..+...|++.+|+..+..+....  +.+...+..+|.++.+.|+..+|.+.|+...
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            344555666666666666666665554  4566666666666666666666666666543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=82.33  E-value=34  Score=32.30  Aligned_cols=168  Identities=11%  Similarity=0.049  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCCHHHHHHHHHHH
Q 007998          145 LGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLF----KRMKMEGVFKPNEVTVLGALAAC  220 (582)
Q Consensus       145 ~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~~pd~~t~~~ll~a~  220 (582)
                      .+.++..=|.+.+++++|.+++-.           -...+.+.|+...|-++-    +-..+.++ ++|..+...++..+
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~-~~~~~~~~rL~~L~  104 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQ-RVDGASRGKLLGCL  104 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHH
Confidence            445566668889999999887643           234456667766655544    55556777 88888888888777


Q ss_pred             hccCCcH-HHHHHHHHHH----HcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCCh
Q 007998          221 GHLGAWK-EGDKIHEYIR----EER--LDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDG  293 (582)
Q Consensus       221 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~  293 (582)
                      .....-+ .=..+.+.++    +.|  ..-|+.....+...|.+.+++.+|+..|-.-. .+++..+..|+.-+...+..
T Consensus       105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~-~~s~~~~a~mL~ew~~~~~~  183 (336)
T 3lpz_A          105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGT-KESPEVLARMEYEWYKQDES  183 (336)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-TTHHHHHHHHHHHHHHTSCG
T ss_pred             HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcC-CchHHHHHHHHHHHHHhcCC
Confidence            7665422 1233444443    333  33467788889999999999999999985322 33446776666555444432


Q ss_pred             hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH
Q 007998          294 PRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN  340 (582)
Q Consensus       294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~  340 (582)
                      .++              |.+.-..++ -|...+++..|..+++...+
T Consensus       184 ~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          184 HTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             GGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred             ccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence            222              222222333 35557888888887766654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=81.62  E-value=9.2  Score=31.87  Aligned_cols=22  Identities=9%  Similarity=0.163  Sum_probs=11.7

Q ss_pred             hhhHHhhcCCHHHHHHHHHhCC
Q 007998          353 VVDLLGRAGRLQEACDIVKSVS  374 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~~  374 (582)
                      +..+|.+.+++++|+.+++.+|
T Consensus       128 ia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          128 LAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHHHCCHHHHHHHHhcCC
Confidence            4444555555555555555553

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=80.81  E-value=9.4  Score=28.73  Aligned_cols=62  Identities=21%  Similarity=0.288  Sum_probs=48.2

Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhh
Q 007998          292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVD  355 (582)
Q Consensus       292 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~  355 (582)
                      +.-+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+-++. .|  +...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence            3446667777777778899999999999999999999999999998887 43  33456666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	582
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.6
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.2
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.12
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.1
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.1
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.1
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.09
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.05
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.01
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.97
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.85
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.52
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.51
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.49
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.45
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.43
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.42
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.42
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.33
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.31
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.31
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.29
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.25
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.18
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.11
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.1
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.04
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.03
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.02
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.93
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.91
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.9
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.82
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.74
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.68
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.6
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.54
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.48
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.28
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.21
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.03
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.92
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.92
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.88
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.04
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.4
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.17
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.83
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.52
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.48
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.01
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	90.69
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	81.48
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	80.28

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-21  Score=193.75  Aligned_cols=370  Identities=11%  Similarity=0.017  Sum_probs=305.1

Q ss_pred             hcCCC-CCHHHHHHHHhcCC---CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH
Q 007998           51 ALSPL-NELAYAHALFRQIN---APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE  126 (582)
Q Consensus        51 ~~y~~-g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  126 (582)
                      ..+-+ |++++|.+.|+++.   +.+...|..+...|.+.|++++|+..|++.++..+. +..++..+...+...|++++
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccccc
Confidence            44446 99999999998863   346788999999999999999999999999886432 56688889999999999999


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 007998          127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEM---GVRDIASWNALIAGLAQGNLASEAVDLFKRMKME  203 (582)
Q Consensus       127 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  203 (582)
                      |.+.+..+.+.... +..........+...+....+.......   .......+..........+....+...+.+....
T Consensus        86 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T d1w3ba_          86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence            99999999887643 4444444555555555555554444332   3345566667777788889999999999888877


Q ss_pred             CCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHH
Q 007998          204 GVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWN  281 (582)
Q Consensus       204 g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~  281 (582)
                      .  +.+...+..+...+...|+.++|...+...++... .+...+..+...|...|++++|...|++..  .+.+...|.
T Consensus       165 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  241 (388)
T d1w3ba_         165 Q--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG  241 (388)
T ss_dssp             C--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             C--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence            5  56678888888999999999999999999988753 367788899999999999999999998764  356778888


Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhc
Q 007998          282 TMVMAFAVHGDGPRALELFEQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRA  360 (582)
Q Consensus       282 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  360 (582)
                      .+...+.+.|++++|+..|++..+.  .|+ ..++..+..++...|++++|...++...... +.+...+..+...|.+.
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  318 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHC
Confidence            9999999999999999999999874  454 5678888999999999999999999988732 45667888899999999


Q ss_pred             CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCC
Q 007998          361 GRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYER  428 (582)
Q Consensus       361 g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  428 (582)
                      |++++|.+.+++. ...| +..+|..+...+...|++++|...|+++++++|+++.+|..|+.+|.+.|+
T Consensus       319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999975 5566 578899999999999999999999999999999999999999999988875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-20  Score=185.73  Aligned_cols=358  Identities=13%  Similarity=0.033  Sum_probs=298.5

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhcCC
Q 007998           79 VLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTLLDVYAKVGE  158 (582)
Q Consensus        79 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~  158 (582)
                      +...+.+.|++++|++.|+++.+..+ -+...+..+...+...|++++|.+.++.+++.. +.+..++..+..+|.+.|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence            34556778999999999999988642 256678888899999999999999999999886 3467789999999999999


Q ss_pred             HHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHH
Q 007998          159 IVSAKKVFDEMG---VRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY  235 (582)
Q Consensus       159 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~  235 (582)
                      +++|...+....   ..+...+..........+....+...........  .................+....+...+..
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccchhhhhHHHHHH
Confidence            999999998774   3355566666666777777777777777766665  45555666666677778888888888888


Q ss_pred             HHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHH
Q 007998          236 IREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDV  313 (582)
Q Consensus       236 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  313 (582)
                      ..... +.+...+..+...+...|++++|...+++..  .+.+..+|..+...+...|++++|+..|++..... ..+..
T Consensus       161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  238 (388)
T d1w3ba_         161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV  238 (388)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred             hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence            87765 3367788889999999999999999998654  25567889999999999999999999999998753 34566


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQL  391 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~  391 (582)
                      .+..+...+.+.|++++|...|+++.+.. +-+...+..+...|...|++++|.+.++..  ..+.+...+..+...+..
T Consensus       239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence            78888889999999999999999998842 234678888999999999999999999876  223478889999999999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      .|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+..
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  369 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999887643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.2e-13  Score=133.18  Aligned_cols=251  Identities=14%  Similarity=0.011  Sum_probs=159.1

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 007998          181 IAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGL  260 (582)
Q Consensus       181 i~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~  260 (582)
                      ...+.+.|++++|+..|++.++..  |-+..+|..+..++...|++++|...+.++++.... +...+..+...|...|+
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence            334455555555555555555543  334455555555555555555555555555554322 34455555555555555


Q ss_pred             HHHHHHHHhccc-CCCC----------------HHHHHHHHHHHHhCCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHH
Q 007998          261 LDKAFEVFDNIK-CRKS----------------LVTWNTMVMAFAVHGDGPRALELFEQMGRAG-VKPDDVSYLAALCAC  322 (582)
Q Consensus       261 ~~~A~~~~~~~~-~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~  322 (582)
                      +++|.+.++... ..|+                .......+..+...+...+|...|.+..+.. -.++...+..+...+
T Consensus       103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~  182 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  182 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            555555555432 1111                1111112223344566778888888877642 233556777788888


Q ss_pred             HcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 007998          323 NHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEI  400 (582)
Q Consensus       323 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~  400 (582)
                      ...|++++|...|++..... +-+...|..+...|.+.|++++|.+.|++. ...| +..+|..+..+|...|++++|+.
T Consensus       183 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  261 (323)
T d1fcha_         183 NLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  261 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH
Confidence            89999999999999988733 234677888888999999999999998876 4445 67789999999999999999999


Q ss_pred             HHHHHHHcCCCCchh-----------HHHHHHHHHhcCCchHHHHH
Q 007998          401 ASRKLVEMGSNNCGD-----------FVLLSNLYAAYERWDDVGRV  435 (582)
Q Consensus       401 ~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~~  435 (582)
                      .|++++++.|++...           +..+..++...|+.+.+...
T Consensus       262 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         262 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999988776443           34466667677776655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.7e-14  Score=134.08  Aligned_cols=225  Identities=13%  Similarity=0.014  Sum_probs=186.5

Q ss_pred             HHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCC
Q 007998          215 GALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGD  292 (582)
Q Consensus       215 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~  292 (582)
                      .....+.+.|++++|...|+++++..+. +...+..+..+|...|++++|...|++..  .+.+...|..+...|...|+
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence            4566778999999999999999987533 68889999999999999999999998754  25578899999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCCCHHH----------------HHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhh
Q 007998          293 GPRALELFEQMGRAGVKPDDVS----------------YLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVD  355 (582)
Q Consensus       293 ~~~A~~~~~~m~~~g~~p~~~t----------------~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~  355 (582)
                      +++|++.+++....  .|+...                ....+..+...+...++...|.+..+ ..-.++...+..+..
T Consensus       103 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~  180 (323)
T d1fcha_         103 QRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV  180 (323)
T ss_dssp             HHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred             ccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence            99999999998763  232111                11122233445677888899988887 333456677888899


Q ss_pred             HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHH
Q 007998          356 LLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVG  433 (582)
Q Consensus       356 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~  433 (582)
                      .+...|++++|.+.+++. ...| +...|..+...+...|++++|.+.++++++.+|+++.++..++.+|.+.|++++|.
T Consensus       181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  260 (323)
T d1fcha_         181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV  260 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999986 3344 68899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 007998          434 RVRKAMKNR  442 (582)
Q Consensus       434 ~~~~~m~~~  442 (582)
                      ..|++..+.
T Consensus       261 ~~~~~al~l  269 (323)
T d1fcha_         261 EHFLEALNM  269 (323)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988763

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=3.5e-09  Score=101.95  Aligned_cols=259  Identities=16%  Similarity=0.038  Sum_probs=169.5

Q ss_pred             HHHHHhCCChhHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCC--C---CchhHHHH
Q 007998          181 IAGLAQGNLASEAVDLFKRMKMEGVFKPN-----EVTVLGALAACGHLGAWKEGDKIHEYIREERL--D---MNVVVCNA  250 (582)
Q Consensus       181 i~~~~~~g~~~~A~~~~~~m~~~g~~~pd-----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~  250 (582)
                      ...+...|++++|++++++..+..  +.+     ..++..+..++...|++++|...+.+..+...  .   .....+..
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            344566777777777777666542  222     23455556666777777777777776654211  1   11234455


Q ss_pred             HHHHHHhcCCHHHHHHHHhccc-------CC--C-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhcC----CCCCHHHHH
Q 007998          251 VIDMYAKCGLLDKAFEVFDNIK-------CR--K-SLVTWNTMVMAFAVHGDGPRALELFEQMGRAG----VKPDDVSYL  316 (582)
Q Consensus       251 li~~y~~~g~~~~A~~~~~~~~-------~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~  316 (582)
                      +...|...|++..|...+....       ..  + ....+..+...+...|+++.+...+.......    ......++.
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  176 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA  176 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence            6667777788777777766432       01  1 12345556677788888888888888776532    122234555


Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHhH-cC-CccC----hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHH
Q 007998          317 AALCACNHAGLVDDGVRLFNSMAN-CG-VKPN----MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-----DMVLWQT  384 (582)
Q Consensus       317 ~ll~a~~~~g~~~~a~~~~~~~~~-~~-~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~  384 (582)
                      .....+...++...+...+..... .. ....    ...+..+...+...|++++|...+++. ...|     ....+..
T Consensus       177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  256 (366)
T d1hz4a_         177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN  256 (366)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence            566667778888888888777665 21 1111    234555666788889999999988876 2222     2455667


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHc------CCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          385 LLGACQLYGDVEMAEIASRKLVEM------GSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       385 ll~~~~~~g~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      +..++...|++++|...+++++..      .|....++..++.+|...|++++|.+.+++..+
T Consensus       257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            788889999999999999988753      244556788899999999999999999887654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=6.3e-10  Score=107.07  Aligned_cols=231  Identities=7%  Similarity=-0.041  Sum_probs=171.1

Q ss_pred             HhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC--CcHHHHHHHHHHHHcCCCCchhHH-HHHHHHHHhcCCH
Q 007998          185 AQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG--AWKEGDKIHEYIREERLDMNVVVC-NAVIDMYAKCGLL  261 (582)
Q Consensus       185 ~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~  261 (582)
                      ...|++++|+.+++...+..  +-+...+..+..++...+  +.+++...+..+++.... +...+ ......+...|..
T Consensus        84 ~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~  160 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAP  160 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhcccc
Confidence            34555778888888888775  556777777766666655  478888888888887543 34444 4455777788999


Q ss_pred             HHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 007998          262 DKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMA  339 (582)
Q Consensus       262 ~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~  339 (582)
                      ++|.+.++...  .+.+..+|+.+...+.+.|++++|...+++....  .|+..   .+...+...+..+++...+....
T Consensus       161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l  235 (334)
T d1dcea1         161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWL  235 (334)
T ss_dssp             HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHH
Confidence            99999998765  2457788999999999999998887666554432  22222   22333445566677788888777


Q ss_pred             HcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998          340 NCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV  417 (582)
Q Consensus       340 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  417 (582)
                      ... +++...+..+...+...|+.++|.+.+.+. ...| +..+|..+...+...|++++|...++++++++|.+...|.
T Consensus       236 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~  314 (334)
T d1dcea1         236 LGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  314 (334)
T ss_dssp             HSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence            633 345566777888888999999999998876 5556 5678888889999999999999999999999998888888


Q ss_pred             HHHHHHH
Q 007998          418 LLSNLYA  424 (582)
Q Consensus       418 ~l~~~~~  424 (582)
                      .|...+.
T Consensus       315 ~L~~~~~  321 (334)
T d1dcea1         315 DLRSKFL  321 (334)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7776665

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1.8e-09  Score=99.43  Aligned_cols=223  Identities=12%  Similarity=-0.025  Sum_probs=132.6

Q ss_pred             hhHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007998          190 ASEAVDLFKRMKMEGVFKP--NEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEV  267 (582)
Q Consensus       190 ~~~A~~~~~~m~~~g~~~p--d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~  267 (582)
                      .+.++.-+.+........+  ...+|..+..++.+.|++++|...|++.++... .+..+++.+..+|.+.|++++|.+.
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhh
Confidence            4455555556554321011  123566666777777777777777777777643 2567777788888888888888888


Q ss_pred             Hhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc
Q 007998          268 FDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP  345 (582)
Q Consensus       268 ~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~  345 (582)
                      |++..  .+.+..+|..+...|...|++++|+..|++..+.. +.+......+..++.+.+..+....+........  +
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  170 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--K  170 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--C
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--h
Confidence            87654  24456677778888888888888888888877642 2233333333344445555555555545444421  1


Q ss_pred             ChhhHHhhhhHHhhcC----CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHH
Q 007998          346 NMKHYGSVVDLLGRAG----RLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFV  417 (582)
Q Consensus       346 ~~~~~~~li~~~~~~g----~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~  417 (582)
                      ....++ ++..+....    ..+.+...+... ...| ...+|..+...+...|++++|...|++++..+|++...|.
T Consensus       171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  247 (259)
T d1xnfa_         171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR  247 (259)
T ss_dssp             CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            111121 222222221    222222222111 1122 2346777888899999999999999999999998765543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1e-08  Score=97.20  Aligned_cols=160  Identities=13%  Similarity=0.029  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccC-CcHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          176 SWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG-AWKEGDKIHEYIREERLDMNVVVCNAVIDM  254 (582)
Q Consensus       176 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  254 (582)
                      .|+.+...+.+.+.+++|+++++++++..  |-+...|.....++...| ++++|...++.+++.... +..+|+.+...
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~  121 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence            45555556666666666776666666654  445556666666665554 356666666666665432 46666666666


Q ss_pred             HHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHcCCC----
Q 007998          255 YAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKP-DDVSYLAALCACNHAGL----  327 (582)
Q Consensus       255 y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~----  327 (582)
                      +.+.|++++|++.|+++.  .+.+...|..+...+...|++++|++.|+++.+.  .| +...|+.+...+.+.+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence            666666666666666543  2445666666666666666666666666666653  33 33444444433333332    


Q ss_pred             --HHHHHHHHHHHhH
Q 007998          328 --VDDGVRLFNSMAN  340 (582)
Q Consensus       328 --~~~a~~~~~~~~~  340 (582)
                        +++|...+..+.+
T Consensus       200 ~~~~~ai~~~~~al~  214 (315)
T d2h6fa1         200 AVLEREVQYTLEMIK  214 (315)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHH
Confidence              3445544444444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1.3e-08  Score=97.82  Aligned_cols=287  Identities=9%  Similarity=-0.030  Sum_probs=145.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CC----hhHHHHHHH
Q 007998          116 KACARVLALFETLQIHSHVLRHGFLAD----ALLGTTLLDVYAKVGEIVSAKKVFDEMGV-----RD----IASWNALIA  182 (582)
Q Consensus       116 ~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~  182 (582)
                      ..+...|++++|.++++..++.....+    ...++.+..+|...|++++|...|++...     ++    ..++..+..
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            344566677777777766665432211    12344455555566666666655554321     11    123334444


Q ss_pred             HHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcC
Q 007998          183 GLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDM---NVVVCNAVIDMYAKCG  259 (582)
Q Consensus       183 ~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~y~~~g  259 (582)
                      .+...|++..+...+.+.....                                ...+...   ....+..+...|...|
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~--------------------------------~~~~~~~~~~~~~~~~~la~~~~~~~  147 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLI--------------------------------NEQHLEQLPMHEFLVRIRAQLLWAWA  147 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH--------------------------------HHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh--------------------------------HhcccchhhHHHHHHHHHHHHHHHhc
Confidence            4455555555555544433210                                0011110   1123334445555555


Q ss_pred             CHHHHHHHHhccc-------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHcCC
Q 007998          260 LLDKAFEVFDNIK-------CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRA----GVKPD--DVSYLAALCACNHAG  326 (582)
Q Consensus       260 ~~~~A~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g  326 (582)
                      +++.+...+....       ......++..+...+...++..++...+.+....    +..+.  ...+..+...+...|
T Consensus       148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T d1hz4a_         148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG  227 (366)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence            5555555554332       0112233444445555566666666655554331    11111  123344445566667


Q ss_pred             CHHHHHHHHHHHhHcCCcc---ChhhHHhhhhHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCh
Q 007998          327 LVDDGVRLFNSMANCGVKP---NMKHYGSVVDLLGRAGRLQEACDIVKSV-------SMGT-DMVLWQTLLGACQLYGDV  395 (582)
Q Consensus       327 ~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~  395 (582)
                      +++.|...++.........   ....+..+...|...|++++|.+.+++.       +..| ....|..+...+...|++
T Consensus       228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  307 (366)
T d1hz4a_         228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK  307 (366)
T ss_dssp             CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence            7777777776665521111   1233444566677777777777766643       3333 244666777788888888


Q ss_pred             HHHHHHHHHHHHcCCC--C-------chhHHHHHHHHHhcCCchHHHH
Q 007998          396 EMAEIASRKLVEMGSN--N-------CGDFVLLSNLYAAYERWDDVGR  434 (582)
Q Consensus       396 ~~a~~~~~~~~~~~p~--~-------~~~~~~l~~~~~~~g~~~~a~~  434 (582)
                      ++|.+.+++++++.+.  .       ...+..+...+...++.+++.+
T Consensus       308 ~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         308 SDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            8888888888775431  1       1223345555566677776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=6.1e-09  Score=98.88  Aligned_cols=224  Identities=11%  Similarity=0.063  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccc--CCCCHHHHHHHHHH
Q 007998          210 EVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCG-LLDKAFEVFDNIK--CRKSLVTWNTMVMA  286 (582)
Q Consensus       210 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~--~~~~~~~~~~li~~  286 (582)
                      ...+..+...+.+.+..++|.++++.+++..+. +...|+....++.+.| ++++|...++...  .+.+..+|+.+...
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~  121 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence            345666777788889999999999999998633 6788899999988877 4999999998764  36678999999999


Q ss_pred             HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCC----
Q 007998          287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGR----  362 (582)
Q Consensus       287 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----  362 (582)
                      +...|++++|+..++++.+.. +-+...|..+...+.+.|++++|...++.+++.+ +.+...|+.+..++.+.+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence            999999999999999999852 3346789999999999999999999999999843 2355667666666655554    


Q ss_pred             --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHhc--CCchHHHH
Q 007998          363 --LQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN--CGDFVLLSNLYAAY--ERWDDVGR  434 (582)
Q Consensus       363 --~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~a~~  434 (582)
                        +++|.+.+.+. ...| +...|..+...+.. ...+++...++++.++.|..  +..+..++.+|...  +..+.+..
T Consensus       200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~  278 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED  278 (315)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence              67888888765 4455 68888877766554 45688999999999988764  34455677777543  44444444


Q ss_pred             HHH
Q 007998          435 VRK  437 (582)
Q Consensus       435 ~~~  437 (582)
                      .++
T Consensus       279 ~~~  281 (315)
T d2h6fa1         279 ILN  281 (315)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=1.5e-08  Score=95.84  Aligned_cols=186  Identities=11%  Similarity=0.055  Sum_probs=127.9

Q ss_pred             CcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccc-CCC-C-HHHHHHHHHHHHhCCChhHHHHHHH
Q 007998          225 AWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIK-CRK-S-LVTWNTMVMAFAVHGDGPRALELFE  301 (582)
Q Consensus       225 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~  301 (582)
                      ..+++..++++.++...+.+...+...+..+.+.|+++.|..+|+++. ..| + ...|...+....+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            346677777777765445566677777888888888888888887653 122 3 3467888888888888888888888


Q ss_pred             HHHhcCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC----CCC
Q 007998          302 QMGRAGVKPDDVSYLAALC-ACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV----SMG  376 (582)
Q Consensus       302 ~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~  376 (582)
                      ++.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+|++.    +..
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            88765322 2233332222 234457888888888888773 1334567777788888888888888888764    333


Q ss_pred             C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          377 T--DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       377 p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      |  ....|...+..-..+|+.+.+..+++++.+.-|..
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence            3  24577777777778888888888888887777654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=2.8e-08  Score=94.00  Aligned_cols=183  Identities=8%  Similarity=0.034  Sum_probs=143.9

Q ss_pred             CCHHHHHHHHhccc---CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 007998          259 GLLDKAFEVFDNIK---CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLF  335 (582)
Q Consensus       259 g~~~~A~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~  335 (582)
                      +..++|..+|++..   .+.+...|...+..+...|+.++|..+|+++.+.........|...+..+.+.|+++.|+.+|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34578888888643   245677899999999999999999999999987533333457888999999999999999999


Q ss_pred             HHHhHcCCccChhhHHhhhhH-HhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          336 NSMANCGVKPNMKHYGSVVDL-LGRAGRLQEACDIVKSV-S-MGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       336 ~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      +++.+.+ +.+...|...... +...|+.+.|..+|+.+ . ...+...|..++......|+++.|..+|+++++..|.+
T Consensus       158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            9998843 2233444444433 34468999999999987 2 22368899999999999999999999999999987755


Q ss_pred             ch----hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007998          413 CG----DFVLLSNLYAAYERWDDVGRVRKAMKNR  442 (582)
Q Consensus       413 ~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~  442 (582)
                      +.    .|...+..-...|+.+.+.++.+++.+.
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            43    5667777777889999999999988764

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=5.1e-09  Score=96.30  Aligned_cols=215  Identities=12%  Similarity=-0.020  Sum_probs=147.2

Q ss_pred             cHHHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 007998          226 WKEGDKIHEYIREERLDM---NVVVCNAVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELF  300 (582)
Q Consensus       226 ~~~a~~~~~~~~~~~~~~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~  300 (582)
                      .+.+..-+++++......   ...++..+..+|.+.|++++|.+.|++..  .+.++.+|+.+..+|...|++++|+..|
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence            345555556665432211   24577788999999999999999999764  3668889999999999999999999999


Q ss_pred             HHHHhcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCC
Q 007998          301 EQMGRAGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTD  378 (582)
Q Consensus       301 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~  378 (582)
                      ++..+.  .|+ ..++..+..++...|++++|...|+...+.. +.+......+...+.+.+..+.+..+.... ...++
T Consensus        95 ~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (259)
T d1xnfa_          95 DSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE  171 (259)
T ss_dssp             HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred             hHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence            999985  444 4678888899999999999999999998843 223333333444455555555544443332 11122


Q ss_pred             HHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007998          379 MVLWQTLLGACQ----LYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       379 ~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  444 (582)
                      ...+.. +..+.    ..+..+.+...+.......|....+|..++.+|...|++++|.+.+++..+..+
T Consensus       172 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         172 QWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             STHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            222221 22221    122234444444444455566667888999999999999999999999887654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=2.5e-09  Score=102.72  Aligned_cols=258  Identities=8%  Similarity=-0.071  Sum_probs=181.5

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH---H-------hccCCcHHHHHHHHHHHHcCCCCchh
Q 007998          177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAA---C-------GHLGAWKEGDKIHEYIREERLDMNVV  246 (582)
Q Consensus       177 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a---~-------~~~~~~~~a~~~~~~~~~~~~~~~~~  246 (582)
                      +..++......+..++|++++.+.++..  |-+...|+..-..   .       ...|.++++..+++.+++... .+..
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~  108 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYG  108 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHH
Confidence            3334444444445689999999988763  3334444333222   2       233457888999999888753 3677


Q ss_pred             HHHHHHHHHHhcCC--HHHHHHHHhccc--CCCCHHHHHH-HHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 007998          247 VCNAVIDMYAKCGL--LDKAFEVFDNIK--CRKSLVTWNT-MVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCA  321 (582)
Q Consensus       247 ~~~~li~~y~~~g~--~~~A~~~~~~~~--~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a  321 (582)
                      .+..+..++...++  +++|...+++..  .+++...|.. ....+...+.+++|+..++++.+.. +-+...|..+..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~  187 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            77777777777664  789999998764  2556777654 4467778899999999999988753 2345678888888


Q ss_pred             HHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHH
Q 007998          322 CNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV--SMGTDMVLWQTLLGACQLYGDVEMAE  399 (582)
Q Consensus       322 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~  399 (582)
                      +...|++++|...+....+.  .|..   ..+...+...+..+++...+...  ...++...+..+...+...++.++|.
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~  262 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC  262 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence            88888887776555544431  1211   12333445566666777666654  22234555666777778889999999


Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          400 IASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       400 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ..+.+..+.+|.+..++..++.+|...|++++|.+.+++..+.+
T Consensus       263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld  306 (334)
T d1dcea1         263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  306 (334)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999988754

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4e-07  Score=71.87  Aligned_cols=102  Identities=15%  Similarity=0.075  Sum_probs=54.9

Q ss_pred             HHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007998          320 CACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEM  397 (582)
Q Consensus       320 ~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~  397 (582)
                      ..+...|++++|...|++.++.. +.+...|..+..+|...|++++|++.+++. ...| +...|..+..++...|++++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence            34445555555555555555522 223444555555555555555555555544 2222 45555556666666666666


Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHH
Q 007998          398 AEIASRKLVEMGSNNCGDFVLLSNL  422 (582)
Q Consensus       398 a~~~~~~~~~~~p~~~~~~~~l~~~  422 (582)
                      |+..++++++.+|+++..+..+.++
T Consensus        90 A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          90 AKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            6666666666666655555554443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2e-07  Score=73.68  Aligned_cols=92  Identities=13%  Similarity=0.137  Sum_probs=83.3

Q ss_pred             hhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCch
Q 007998          353 VVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD  430 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  430 (582)
                      -...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence            346678899999999999987 4445 78899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCC
Q 007998          431 DVGRVRKAMKNRDV  444 (582)
Q Consensus       431 ~a~~~~~~m~~~~~  444 (582)
                      +|...+++..+...
T Consensus        89 ~A~~~~~~a~~~~p  102 (117)
T d1elwa_          89 EAKRTYEEGLKHEA  102 (117)
T ss_dssp             HHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999887543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.8e-06  Score=74.72  Aligned_cols=140  Identities=11%  Similarity=-0.029  Sum_probs=107.4

Q ss_pred             HHHHHhcCCHHHHHHHHhcccCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 007998          252 IDMYAKCGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDG  331 (582)
Q Consensus       252 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a  331 (582)
                      ...+...|+++.|.+.|.++. +|+..+|..+...|...|++++|++.|++.++.. +-+...|..+..++.+.|++++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHH
Confidence            556788999999999999998 8999999999999999999999999999998853 23456888889999999999999


Q ss_pred             HHHHHHHhHcCCccCh-hhHHhhhhHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 007998          332 VRLFNSMANCGVKPNM-KHYGSVVDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMG  409 (582)
Q Consensus       332 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  409 (582)
                      ...|++..... +.+. ..|..+..                  ..++ ...++..+..++...|++++|.+.+++++++.
T Consensus        90 ~~~~~kAl~~~-~~n~~~~~~~~~~------------------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          90 IKDLKEALIQL-RGNQLIDYKILGL------------------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHTT-TTCSEEECGGGTB------------------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhC-ccCchHHHHHhhh------------------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            99999988632 1111 11111100                  0111 13455667778889999999999999999988


Q ss_pred             CCC
Q 007998          410 SNN  412 (582)
Q Consensus       410 p~~  412 (582)
                      |..
T Consensus       151 ~~~  153 (192)
T d1hh8a_         151 SEP  153 (192)
T ss_dssp             CSG
T ss_pred             CCc
Confidence            864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=2e-07  Score=81.67  Aligned_cols=102  Identities=5%  Similarity=-0.096  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007998          310 PDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLG  387 (582)
Q Consensus       310 p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~  387 (582)
                      |+...+......+.+.|++++|...|+++++.. +.+...|..+..+|.+.|++++|++.|++. .+.| +...|..+..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            444455555555555566666666665555522 223444555555555555555555555543 3334 3445555555


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCC
Q 007998          388 ACQLYGDVEMAEIASRKLVEMGSNN  412 (582)
Q Consensus       388 ~~~~~g~~~~a~~~~~~~~~~~p~~  412 (582)
                      ++...|++++|...|+++++++|++
T Consensus        81 ~~~~l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCccc
Confidence            5555555555555555555554433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=1.9e-06  Score=80.15  Aligned_cols=193  Identities=8%  Similarity=-0.024  Sum_probs=97.3

Q ss_pred             HHHHhccCCcHHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccc----CCCC----HHHHHHH
Q 007998          217 LAACGHLGAWKEGDKIHEYIREE----RLDM-NVVVCNAVIDMYAKCGLLDKAFEVFDNIK----CRKS----LVTWNTM  283 (582)
Q Consensus       217 l~a~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l  283 (582)
                      ...|...+++++|...|.++.+.    +-++ -..+|..+..+|.+.|++++|.+.+++..    ...+    ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            34455566666666666655442    1111 13455666666666666666666665432    0111    2344445


Q ss_pred             HHHHHh-CCChhHHHHHHHHHHh----cCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccCh------hhHH
Q 007998          284 VMAFAV-HGDGPRALELFEQMGR----AGVKPD-DVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNM------KHYG  351 (582)
Q Consensus       284 i~~~~~-~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~  351 (582)
                      ...|.. .|++++|++.|++..+    .+..+. ..++..+...+...|++++|...|+++.........      ..+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            555533 4777777777766543    111111 134566666677777777777777776652111111      1122


Q ss_pred             hhhhHHhhcCCHHHHHHHHHhC-CCCC---C---HHHHHHHHHHHHhc--CChHHHHHHHHHHHHcC
Q 007998          352 SVVDLLGRAGRLQEACDIVKSV-SMGT---D---MVLWQTLLGACQLY--GDVEMAEIASRKLVEMG  409 (582)
Q Consensus       352 ~li~~~~~~g~~~~A~~~~~~~-~~~p---~---~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~  409 (582)
                      ..+..+...|+++.|.+.+++. ...|   +   ......++.++...  +.+++|...|+++.+++
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence            3344455667777777776665 2222   1   22334455554432  23555555555444443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4e-06  Score=72.45  Aligned_cols=137  Identities=12%  Similarity=-0.027  Sum_probs=93.0

Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHH
Q 007998          150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEG  229 (582)
Q Consensus       150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a  229 (582)
                      ...+...|+++.|.+.|+++..++..+|..+...|...|++++|++.|++.++..  +.+...|..+..++.+.|++++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--p~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh--hhhhhhHHHHHHHHHhhccHHHH
Confidence            4556778888888888888887888888888888888888888888888888776  56777888888888888888888


Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcccCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhc
Q 007998          230 DKIHEYIREERLDMNVVVCNAVIDMYAKCGLLDKAFEVFDNIKCRK-SLVTWNTMVMAFAVHGDGPRALELFEQMGRA  306 (582)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  306 (582)
                      ...|++.+..... +...      .|...|           +..+. ...++..+..+|.+.|++++|++.|.+..+.
T Consensus        90 ~~~~~kAl~~~~~-n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          90 IKDLKEALIQLRG-NQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHTTTT-CSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCcc-CchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            8888777653211 1000      000000           00001 1234555666777777788887777777664

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.43  E-value=2.9e-07  Score=72.01  Aligned_cols=89  Identities=12%  Similarity=-0.038  Sum_probs=79.7

Q ss_pred             hhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCc
Q 007998          352 SVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW  429 (582)
Q Consensus       352 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  429 (582)
                      .+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|++
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence            3556788899999999999886 4445 6889999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHH
Q 007998          430 DDVGRVRKAMK  440 (582)
Q Consensus       430 ~~a~~~~~~m~  440 (582)
                      ++|.+.+++..
T Consensus       101 ~~A~~~l~~~l  111 (112)
T d1hxia_         101 NAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.5e-06  Score=72.65  Aligned_cols=117  Identities=8%  Similarity=-0.003  Sum_probs=90.8

Q ss_pred             HHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 007998          318 ALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDV  395 (582)
Q Consensus       318 ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~  395 (582)
                      -...|.+.|++++|...|+++++.. +-+...|..+..+|...|++++|.+.|++. ...| +..+|..+..++...|++
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            3446677888888888888888743 345677778888888888888888888876 4445 678899999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHH--hcCCchHHHHH
Q 007998          396 EMAEIASRKLVEMGSNNCGDFVLLSNLYA--AYERWDDVGRV  435 (582)
Q Consensus       396 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~a~~~  435 (582)
                      ++|...++++++++|+++..+..+..+..  ..+.+++|...
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999888877766543  33445555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=4.7e-07  Score=79.13  Aligned_cols=96  Identities=9%  Similarity=-0.081  Sum_probs=57.5

Q ss_pred             CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhh
Q 007998          275 KSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSV  353 (582)
Q Consensus       275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l  353 (582)
                      |+..........|.+.|++++|+..|++.++.. +-+...|..+..+|.+.|++++|...|+.+++.  .| +...|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence            445555555666666666666666666665542 223445666666666666666666666666652  23 34555666


Q ss_pred             hhHHhhcCCHHHHHHHHHhC
Q 007998          354 VDLLGRAGRLQEACDIVKSV  373 (582)
Q Consensus       354 i~~~~~~g~~~~A~~~~~~~  373 (582)
                      ..+|.+.|++++|+..|++.
T Consensus        79 g~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            66666666666666666543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.33  E-value=9.9e-06  Score=75.09  Aligned_cols=70  Identities=9%  Similarity=-0.091  Sum_probs=43.0

Q ss_pred             CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhC----CCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 007998           56 NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRG----SHRSD-ALTCSFALKACARVLALFETLQI  130 (582)
Q Consensus        56 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~  130 (582)
                      +++++|..+|.           .....|...|++++|++.|.+..+.    +-+++ ..+|..+..++...|++++|.+.
T Consensus        31 ~~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~   99 (290)
T d1qqea_          31 YKFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS   99 (290)
T ss_dssp             HHHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            56667766544           4466777788888888888777542    11111 23566666666667777777666


Q ss_pred             HHHHHH
Q 007998          131 HSHVLR  136 (582)
Q Consensus       131 ~~~~~~  136 (582)
                      ++...+
T Consensus       100 ~~~a~~  105 (290)
T d1qqea_         100 LENAIQ  105 (290)
T ss_dssp             HHHHHH
T ss_pred             HHHhhH
Confidence            665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.31  E-value=8.9e-05  Score=67.27  Aligned_cols=113  Identities=12%  Similarity=-0.056  Sum_probs=69.6

Q ss_pred             CHHHHHHHHHHHhHcCCccChhhHHhhhhHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 007998          327 LVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGR----AGRLQEACDIVKSVSMGTDMVLWQTLLGACQL----YGDVEMA  398 (582)
Q Consensus       327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a  398 (582)
                      ....+...+.....   ..+...+..|...|..    ..+...+...++......+......|...+..    ..+++.|
T Consensus       125 ~~~~a~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A  201 (265)
T d1ouva_         125 DFKKAVEYFTKACD---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA  201 (265)
T ss_dssp             CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             hhHHHHHHhhhhhc---ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhh
Confidence            44455555554443   2233344444444443    34455555555544222355555555555544    4688999


Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007998          399 EIASRKLVEMGSNNCGDFVLLSNLYAA----YERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       399 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~  444 (582)
                      ...|++..+.+  ++..+..|+.+|..    ..+.++|.+.|++..+.|.
T Consensus       202 ~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         202 LARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            99999988875  56788888888875    3478889999988877664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.6e-06  Score=72.55  Aligned_cols=91  Identities=8%  Similarity=-0.007  Sum_probs=82.5

Q ss_pred             hhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCch
Q 007998          353 VVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWD  430 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  430 (582)
                      ....|.+.|++++|+..|++. ...| +...|..+...|...|++++|...|+++++++|.+..+|..++.+|...|+++
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~   95 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR   95 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence            345688999999999999987 4445 78899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 007998          431 DVGRVRKAMKNRD  443 (582)
Q Consensus       431 ~a~~~~~~m~~~~  443 (582)
                      +|...+++.....
T Consensus        96 eA~~~~~~a~~~~  108 (159)
T d1a17a_          96 AALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcC
Confidence            9999999887654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2e-06  Score=68.07  Aligned_cols=107  Identities=14%  Similarity=-0.056  Sum_probs=82.2

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 007998          316 LAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRL---QEACDIVKSV-SMGTDM---VLWQTLLGA  388 (582)
Q Consensus       316 ~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p~~---~~~~~ll~~  388 (582)
                      ..+++.+...+++++|++.|+.....+ +.+..++..+..++.+.++.   ++|.++++++ ...|+.   .+|..|..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            356777778888999999999888843 34567777788888765544   5688888876 444432   377888999


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007998          389 CQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLY  423 (582)
Q Consensus       389 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  423 (582)
                      |.+.|++++|++.|+++++.+|++..+...+..+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            99999999999999999999999887666555443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=7.1e-06  Score=69.26  Aligned_cols=133  Identities=11%  Similarity=0.005  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHh
Q 007998          279 TWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLG  358 (582)
Q Consensus       279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  358 (582)
                      .+......+.+.|++++|+..|++.+..-  |....            ....-......+       ...+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~~------------~~~~~~~~~~~~-------~~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESS------------FSNEEAQKAQAL-------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCC------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhccc------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence            44555667777888888888887776531  10000            000000000000       1234566788899


Q ss_pred             hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHH
Q 007998          359 RAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDV  432 (582)
Q Consensus       359 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a  432 (582)
                      +.|++++|+..+++. ...| ++..|..+..++...|++++|...|+++++++|+++.+...+..+..+.+...+.
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999876 4455 7889999999999999999999999999999999999999998888766655543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.18  E-value=0.00058  Score=61.60  Aligned_cols=111  Identities=11%  Similarity=0.032  Sum_probs=58.3

Q ss_pred             cHHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhcccCCCCHHHHHHHHHHHHh----CCChhHHH
Q 007998          226 WKEGDKIHEYIREERLDMNVVVCNAVIDMYAK----CGLLDKAFEVFDNIKCRKSLVTWNTMVMAFAV----HGDGPRAL  297 (582)
Q Consensus       226 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~  297 (582)
                      ...+...+......+   +...+..|...|..    ..+...+...++......+..+...+...|..    ..++++|+
T Consensus       126 ~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~  202 (265)
T d1ouva_         126 FKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEAL  202 (265)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred             hHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhh
Confidence            344444444444332   34445555555554    23445555555544323455555555555554    45677777


Q ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHhHcC
Q 007998          298 ELFEQMGRAGVKPDDVSYLAALCACNH----AGLVDDGVRLFNSMANCG  342 (582)
Q Consensus       298 ~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~~~~~~  342 (582)
                      ..|++..+.|   +...+..|...|.+    ..+.++|.++|++....|
T Consensus       203 ~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         203 ARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             hhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            7777776655   33344444444443    235666777776666544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.8e-05  Score=65.41  Aligned_cols=111  Identities=9%  Similarity=0.012  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY  392 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~  392 (582)
                      .+......+.+.|++++|...|.+.+. ....+....              .+ ......+    -..+|..+..+|.+.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~--------------~~-~~~~~~~----~~~~~~nla~~y~k~   75 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN--------------EE-AQKAQAL----RLASHLNLAMCHLKL   75 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS--------------HH-HHHHHHH----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch--------------HH-Hhhhchh----HHHHHHHHHHHHHhh
Confidence            344455567778888888888887776 221111100              00 0000000    123677788889999


Q ss_pred             CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      |++++|+..++++++++|.++.++..++.+|...|++++|...++...+.+
T Consensus        76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999987754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.3e-06  Score=66.05  Aligned_cols=93  Identities=11%  Similarity=0.043  Sum_probs=77.1

Q ss_pred             HhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--chhHHHHHHHH
Q 007998          351 GSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYG---DVEMAEIASRKLVEMGSNN--CGDFVLLSNLY  423 (582)
Q Consensus       351 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~  423 (582)
                      ..++..+...+++++|++.|++. ...| ++.++..+..++.+.+   ++++|+.+++++++.+|.+  ..++..|+.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45777888999999999999987 4444 7788888888887644   5567999999999988754  34788999999


Q ss_pred             HhcCCchHHHHHHHHHHhCC
Q 007998          424 AAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       424 ~~~g~~~~a~~~~~~m~~~~  443 (582)
                      .+.|++++|.+.+++..+..
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHHHHHhC
Confidence            99999999999999998754

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.04  E-value=3.1e-05  Score=65.03  Aligned_cols=92  Identities=11%  Similarity=0.009  Sum_probs=74.0

Q ss_pred             hHHhhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhc
Q 007998          349 HYGSVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAY  426 (582)
Q Consensus       349 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  426 (582)
                      .|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|+++.+...+..+....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4555777888999999999998876 3344 7888999999999999999999999999999999999888888887776


Q ss_pred             CCchH-HHHHHHHHH
Q 007998          427 ERWDD-VGRVRKAMK  440 (582)
Q Consensus       427 g~~~~-a~~~~~~m~  440 (582)
                      +...+ ..+++..|-
T Consensus       146 ~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         146 KEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHH
Confidence            65443 445555543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.6e-05  Score=63.38  Aligned_cols=90  Identities=13%  Similarity=0.131  Sum_probs=71.8

Q ss_pred             hhhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCch-------hHHHHHHH
Q 007998          352 SVVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCG-------DFVLLSNL  422 (582)
Q Consensus       352 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~  422 (582)
                      .+...|.+.|++++|++.|++. ...| +..+|..+..+|.+.|+++.|+..++++++++|.++.       +|..++..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            4556777888888888888765 3344 6888888999999999999999999999998876654       55567777


Q ss_pred             HHhcCCchHHHHHHHHHHh
Q 007998          423 YAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       423 ~~~~g~~~~a~~~~~~m~~  441 (582)
                      +...+++++|...+++...
T Consensus        89 ~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHh
Confidence            8888899999999876653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.02  E-value=5.4e-05  Score=62.32  Aligned_cols=112  Identities=9%  Similarity=-0.016  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007998          314 SYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLY  392 (582)
Q Consensus       314 t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~  392 (582)
                      .+..-...+.+.|++.+|...|.+++. ....+...              -.........    ....+|..+..+|.+.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~Nla~~~~~l   80 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------DQILLDKKKN----IEISCNLNLATCYNKN   80 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--------------CHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh--------------hHHHHHhhhh----HHHHHHhhHHHHHHHh
Confidence            444555667778888888888887776 21111000              0000000000    0234677788889999


Q ss_pred             CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      |++++|++.++++++.+|.+..+|..++.+|...|++++|...|++..+..
T Consensus        81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999998877643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.99  E-value=2.9e-05  Score=65.33  Aligned_cols=129  Identities=12%  Similarity=0.030  Sum_probs=88.7

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCcc-ChhhHHhhhhHHh
Q 007998          280 WNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKP-NMKHYGSVVDLLG  358 (582)
Q Consensus       280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~  358 (582)
                      +......+...|++++|+..|++..+.            +............         ..+.| ....|..+..+|.
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~---------~~~~~~~~~~~~nla~~~~   88 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG---------AKLQPVALSCVLNIGACKL   88 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH---------GGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH---------HHhChhhHHHHHHHHHHHH
Confidence            444556677778888888887776531            0000000000000         01112 3455667788899


Q ss_pred             hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCc
Q 007998          359 RAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW  429 (582)
Q Consensus       359 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  429 (582)
                      +.|++++|+..+++. .+.| ++..|..+..++...|+++.|+..|+++++++|+++.++..+..++.+....
T Consensus        89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1          89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999998876 5556 6888999999999999999999999999999999988888877776554433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.93  E-value=7.4e-05  Score=61.45  Aligned_cols=124  Identities=11%  Similarity=-0.028  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHhCCChhHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHh
Q 007998          277 LVTWNTMVMAFAVHGDGPRALELFEQMGRAG----VKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGS  352 (582)
Q Consensus       277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  352 (582)
                      ...+......+.+.|++.+|+..|.+..+.-    ..++.....                    ...    .....+|..
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~N   72 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD--------------------KKK----NIEISCNLN   72 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH--------------------HHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH--------------------hhh----hHHHHHHhh
Confidence            3467778889999999999999999987631    111111110                    000    012245667


Q ss_pred             hhhHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          353 VVDLLGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       353 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      +..+|.+.|++++|++.+++. ...| +..+|..+..++...|+++.|...|+++++++|+++.+...+..+..
T Consensus        73 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          73 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            888899999999999999876 4455 78999999999999999999999999999999999887776665543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.91  E-value=4e-05  Score=64.35  Aligned_cols=111  Identities=6%  Similarity=-0.035  Sum_probs=81.5

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 007998          315 YLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT-DMVLWQTLLGACQLYG  393 (582)
Q Consensus       315 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g  393 (582)
                      +......+...|++++|...|.++++..  +.          ........+      .....| +...|..+..++.+.|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~--~~----------~~~~~~~~~------~~~~~~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAEDAD------GAKLQPVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSCHHH------HGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh--hh----------hhhhhhhHH------HHHhChhhHHHHHHHHHHHHhhc
Confidence            4445556677788888888887766410  00          000000000      011123 4567788889999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          394 DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       394 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+..
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~  141 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA  141 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999888743

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.90  E-value=4.3e-05  Score=59.09  Aligned_cols=89  Identities=9%  Similarity=-0.150  Sum_probs=55.0

Q ss_pred             HHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 007998          179 ALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYAKC  258 (582)
Q Consensus       179 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~  258 (582)
                      .+...+.+.|++++|+..|++.+...  +-+..+|..+..++.+.|++++|...+++.++... .+...+..+...|.+.
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHHC
Confidence            34455666666777777666666654  34566666666666666666666666666666542 2455666666666666


Q ss_pred             CCHHHHHHHHhc
Q 007998          259 GLLDKAFEVFDN  270 (582)
Q Consensus       259 g~~~~A~~~~~~  270 (582)
                      |++++|.+.|++
T Consensus        98 g~~~~A~~~l~~  109 (112)
T d1hxia_          98 HNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            666666666654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.6e-06  Score=84.73  Aligned_cols=94  Identities=10%  Similarity=-0.121  Sum_probs=44.9

Q ss_pred             hhhHHhhhhHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh
Q 007998          347 MKHYGSVVDLLGRAGRLQEACDIVKSV-SMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA  425 (582)
Q Consensus       347 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  425 (582)
                      ...+..+...+.+.|+.++|...++.. ... ...++..+...+...|++++|+..|+++++++|++..+|..|+.+|..
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~  198 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS  198 (497)
T ss_dssp             -----------------------CCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            344555555666666666666554432 111 123455566666777777777777777777777777777777777777


Q ss_pred             cCCchHHHHHHHHHHh
Q 007998          426 YERWDDVGRVRKAMKN  441 (582)
Q Consensus       426 ~g~~~~a~~~~~~m~~  441 (582)
                      .|+..+|...+.+...
T Consensus       199 ~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         199 KGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             TTCHHHHHHHHHHHHS
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            7777777776666554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.82  E-value=0.0002  Score=59.84  Aligned_cols=112  Identities=8%  Similarity=-0.005  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007998          313 VSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQL  391 (582)
Q Consensus       313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~  391 (582)
                      ..+......+.+.|++++|...|++.+. ....+...              .+. ....+.+    ...+|..+..+|.+
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~--------------~~~-~~~~~~~----~~~~~~Nla~~~~~   76 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS--------------EKE-SKASESF----LLAAFLNLAMCYLK   76 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHH-HHHHHHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc--------------hhh-hhhcchh----HHHHHHhHHHHHHH
Confidence            3455566667777888888887777665 21111100              000 0000000    13456677888999


Q ss_pred             cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          392 YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       392 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      .|++++|+..++++++++|.+..+|..++.+|...|++++|...+++..+..
T Consensus        77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999988654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.74  E-value=0.016  Score=53.32  Aligned_cols=125  Identities=13%  Similarity=0.048  Sum_probs=74.6

Q ss_pred             HHHhcCCC-CCHHHHHHHHhcCCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHH
Q 007998           48 EFYALSPL-NELAYAHALFRQINAPSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFE  126 (582)
Q Consensus        48 ~li~~y~~-g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  126 (582)
                      .+.+.+-+ |.++.|..++..+.     .|..++..+.+.+++..|++++.+.      -+..+|..+..+|........
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~l   87 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL   87 (336)
T ss_dssp             ----------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHH
Confidence            45555656 77777877777654     3667777777788888877777654      145677777777776655543


Q ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCC
Q 007998          127 TLQIHSHVLRHGFLADALLGTTLLDVYAKVGEIVSAKKVFDEMG---VRDIASWNALIAGLAQGN  188 (582)
Q Consensus       127 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g  188 (582)
                      +.     +.......++.....++..|-..|.+++...+++...   ..+...++.++..|++.+
T Consensus        88 a~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          88 AQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             HH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence            31     2222223344444567777777787777777777542   345566777777777654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=0.00011  Score=62.02  Aligned_cols=119  Identities=11%  Similarity=-0.016  Sum_probs=85.6

Q ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007998          316 LAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGTDMVLWQTLLGACQLYGD  394 (582)
Q Consensus       316 ~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~  394 (582)
                      ..........|++++|...|..... +.-.+-..        +....-......-++.    .....+..+...+...|+
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence            3444567889999999999999987 21111100        0000001111111111    124577888999999999


Q ss_pred             hHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHh-----CCCcc
Q 007998          395 VEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKN-----RDVKK  446 (582)
Q Consensus       395 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~  446 (582)
                      +++|...++++++.+|.+...|..++.+|...|++++|.+.|+++.+     .|+.|
T Consensus        83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P  139 (179)
T d2ff4a2          83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP  139 (179)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999999998743     56654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.60  E-value=0.027  Score=51.84  Aligned_cols=136  Identities=8%  Similarity=-0.051  Sum_probs=69.2

Q ss_pred             CCChhHHHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchHHHHHH
Q 007998           70 APSTNDFNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHGFLADALLGTTL  149 (582)
Q Consensus        70 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l  149 (582)
                      .||..--.....-|.+.|.++.|..+|..+..         |..++..+.+.+++..|.++...   .+   +..+|..+
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k---~~---~~~~~k~~   75 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK---AN---STRTWKEV   75 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHH---HT---CHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHH---cC---CHHHHHHH
Confidence            34544445566666677777777777765532         56666666777777766555432   22   44566666


Q ss_pred             HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Q 007998          150 LDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL  223 (582)
Q Consensus       150 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~  223 (582)
                      ...+.+......|.-+ ......+......++..|-..|.+++.+.++.......  +++...++.++..+++.
T Consensus        76 ~~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~--~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          76 CFACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTT
T ss_pred             HHHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC--ccchHHHHHHHHHHHHh
Confidence            6666666655444222 11112234444566667777777777777776654332  45555666666666654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00043  Score=54.64  Aligned_cols=60  Identities=13%  Similarity=0.039  Sum_probs=38.0

Q ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Q 007998          177 WNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIRE  238 (582)
Q Consensus       177 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~  238 (582)
                      +-.+...|.+.|++++|+..|.+.++.+  +.+...+..+..++.+.|++++|...+.++++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            3445556666666777776666666654  45566666666666666666666666666554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.1e-05  Score=80.96  Aligned_cols=260  Identities=7%  Similarity=-0.080  Sum_probs=123.0

Q ss_pred             HHHHHHhhcC--CC-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhccCCcHHHHHHHHHH
Q 007998          161 SAKKVFDEMG--VR-DIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEV-TVLGALAACGHLGAWKEGDKIHEYI  236 (582)
Q Consensus       161 ~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~  236 (582)
                      +|.+.|++..  +| ...+|..+...|...|++++|   |++++..   .|+.. .... ....- ...+..+.+.++..
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~-e~~Lw-~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKV-EQDLW-NHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTH-HHHHH-HHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhH-HHHHH-HHHHHHHHHHHHHh
Confidence            4555555543  22 344566667777777777765   6666544   23211 1111 00000 11234445555555


Q ss_pred             HHcCCCCchhHHH--HHHHHHHhcCCHHHHHHHHhccc--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCH
Q 007998          237 REERLDMNVVVCN--AVIDMYAKCGLLDKAFEVFDNIK--CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDD  312 (582)
Q Consensus       237 ~~~~~~~~~~~~~--~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  312 (582)
                      .+....++..-..  .+...+...+.++.|...+...-  ..++...|..+...+...|+.++|...+++....  .| .
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~  152 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-Q  152 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-H
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-H
Confidence            5433333322211  12222334555666766666432  1345566777777888888888888777665532  11 2


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 007998          313 VSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSV-S-MGTDMVLWQTLLGACQ  390 (582)
Q Consensus       313 ~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~  390 (582)
                      .++..+...+...|++++|...|++..+.. +-+...|+.|...|...|+..+|...|.+. . ..|-..++..|...+.
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            466677778888888888888888887732 234567788888888888888888877765 2 2456777777776665


Q ss_pred             hcCChHHHHHHHHHHHHcCCC---CchhHHHHHHHHHhcCCchHHHHHHHHH
Q 007998          391 LYGDVEMAEIASRKLVEMGSN---NCGDFVLLSNLYAAYERWDDVGRVRKAM  439 (582)
Q Consensus       391 ~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m  439 (582)
                      +..+...+.       +..+.   -...+..+...+...+.+++...+.+++
T Consensus       232 ~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~  276 (497)
T d1ya0a1         232 KALESRDEV-------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL  276 (497)
T ss_dssp             HHTTSCCCC-------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred             Hhhhhhhhh-------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence            433221110       00011   1124445555555666666665554433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.48  E-value=5.5e-05  Score=61.58  Aligned_cols=75  Identities=11%  Similarity=0.071  Sum_probs=46.0

Q ss_pred             HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCc
Q 007998          363 LQEACDIVKSV-SMGT-DMVLWQTLLGACQLYG-----------DVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERW  429 (582)
Q Consensus       363 ~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  429 (582)
                      +++|.+.|++. .+.| +..+|..+..+|...|           +++.|.+.|+++++++|++...+..|...       
T Consensus        57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------  129 (145)
T d1zu2a1          57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------  129 (145)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------
Confidence            34444444443 2333 4455555555554332           46889999999999999887666666554       


Q ss_pred             hHHHHHHHHHHhCCC
Q 007998          430 DDVGRVRKAMKNRDV  444 (582)
Q Consensus       430 ~~a~~~~~~m~~~~~  444 (582)
                      ..|.+++.+..++|+
T Consensus       130 ~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1         130 AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HTHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHhc
Confidence            355666666665554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.41  E-value=5.7e-05  Score=61.49  Aligned_cols=87  Identities=8%  Similarity=0.013  Sum_probs=64.7

Q ss_pred             HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          357 LGRAGRLQEACDIVKSV-SMGT-DMVLWQTLLGACQL----------YGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       357 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      |-+.+.+++|.+.|+.. ...| ++.+|..+..++..          .+.+++|+..|+++++++|+++.+|..++.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            45566677777777765 3344 55666666655543          345689999999999999999999999999998


Q ss_pred             hcCC-----------chHHHHHHHHHHhCC
Q 007998          425 AYER-----------WDDVGRVRKAMKNRD  443 (582)
Q Consensus       425 ~~g~-----------~~~a~~~~~~m~~~~  443 (582)
                      ..|+           +++|.+.|++..+..
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            7764           577888888777544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.37  E-value=0.00034  Score=57.51  Aligned_cols=63  Identities=10%  Similarity=-0.117  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----------CchhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSN-----------NCGDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       379 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      ...|+.+..+|...|++++|...+++.+++.|.           ...++..++.+|...|++++|...|++..+
T Consensus        55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788888999999999999999998875431           123577899999999999999999998765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00062  Score=50.41  Aligned_cols=70  Identities=13%  Similarity=0.053  Sum_probs=51.1

Q ss_pred             hhhhHHhhcCCHHHHHHHHHhC----C----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 007998          352 SVVDLLGRAGRLQEACDIVKSV----S----MGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSN  421 (582)
Q Consensus       352 ~li~~~~~~g~~~~A~~~~~~~----~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~  421 (582)
                      .+...+.+.|++++|.+.|++.    +    ..+ ...++..|..++.+.|++++|...++++++++|+++.++..+..
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~   88 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY   88 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            3445555666666665555543    1    112 25678889999999999999999999999999999888777654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.0014  Score=54.95  Aligned_cols=72  Identities=10%  Similarity=-0.006  Sum_probs=51.1

Q ss_pred             hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHH-----HcCCCCchhH
Q 007998          174 IASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIR-----EERLDMNVVV  247 (582)
Q Consensus       174 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~  247 (582)
                      ...+..+...+...|++++|+..++++....  +-+...|..++.++.+.|+.++|.+.|+++.     +.|+.|...+
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            3456667777777777777777777777765  5677777777777777777777777777663     3467766544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.03  E-value=0.00096  Score=59.91  Aligned_cols=125  Identities=11%  Similarity=0.006  Sum_probs=75.8

Q ss_pred             HhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccC-hhhHHhhhhHHhhcCCHHHH
Q 007998          288 AVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPN-MKHYGSVVDLLGRAGRLQEA  366 (582)
Q Consensus       288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A  366 (582)
                      .+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+.  .|+ ...+..+..++...+..+++
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence            34677788888887777642 234467777777777888888888888777763  243 33333344444433434433


Q ss_pred             HHHHHhC--CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchh
Q 007998          367 CDIVKSV--SMGT-DMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGD  415 (582)
Q Consensus       367 ~~~~~~~--~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~  415 (582)
                      ..-....  ...| +...+......+...|+.++|...++++.+..|..+..
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~  135 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL  135 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence            3222221  1123 23333444566778889999999999988888876543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.92  E-value=0.0031  Score=51.44  Aligned_cols=31  Identities=23%  Similarity=-0.027  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 007998          381 LWQTLLGACQLYGDVEMAEIASRKLVEMGSN  411 (582)
Q Consensus       381 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~  411 (582)
                      .+..+..+|...|++++|...|++++++.|.
T Consensus       102 a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1         102 AVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            5677788999999999999999999987653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.92  E-value=0.0014  Score=58.84  Aligned_cols=52  Identities=8%  Similarity=-0.026  Sum_probs=28.4

Q ss_pred             hCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHc
Q 007998          186 QGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREE  239 (582)
Q Consensus       186 ~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~  239 (582)
                      +.|++++|++.+++.++..  |.|...+..+...++..|++++|.+.++...+.
T Consensus         8 ~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4455555555555555553  444555555555555555555555555555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0028  Score=46.69  Aligned_cols=65  Identities=12%  Similarity=-0.086  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-------chhHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007998          379 MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNN-------CGDFVLLSNLYAAYERWDDVGRVRKAMKNRD  443 (582)
Q Consensus       379 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  443 (582)
                      ...+-.+...+.+.|+++.|...|++++++.|.+       ..++..|+.+|.+.|++++|...+++..+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            3444567788999999999999999999875433       4578899999999999999999999988754

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.68  Score=44.17  Aligned_cols=80  Identities=9%  Similarity=-0.027  Sum_probs=38.5

Q ss_pred             CCCHHHHHHHHHHHhHcCCccChhhHHhhhhHHhhcCCHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChHHHHHHH
Q 007998          325 AGLVDDGVRLFNSMANCGVKPNMKHYGSVVDLLGRAGRLQEACDIVKSVSMGT-D-MVLWQTLLGACQLYGDVEMAEIAS  402 (582)
Q Consensus       325 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~  402 (582)
                      .+..+.+...+......+  .+.....-++....+.+++..+...++.++..| + ..-..=+..++...|+.+.|...|
T Consensus       265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~  342 (450)
T d1qsaa1         265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL  342 (450)
T ss_dssp             TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence            344455555555444422  222222223334445566666666666664332 1 111122335556666666666666


Q ss_pred             HHHH
Q 007998          403 RKLV  406 (582)
Q Consensus       403 ~~~~  406 (582)
                      ..+.
T Consensus       343 ~~~a  346 (450)
T d1qsaa1         343 HQLM  346 (450)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6654

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.40  E-value=0.35  Score=36.18  Aligned_cols=140  Identities=10%  Similarity=0.078  Sum_probs=97.6

Q ss_pred             HHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhhhHHhhcCCHHH
Q 007998          287 FAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVVDLLGRAGRLQE  365 (582)
Q Consensus       287 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~  365 (582)
                      +...|..++..++..+....   .+..-|+.++.-....-+-+...+.++..-+ .++.|              ++++..
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence            34567778888888777653   3455666666655555566666666666655 43333              444444


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007998          366 ACDIVKSVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAAYERWDDVGRVRKAMKNRDVK  445 (582)
Q Consensus       366 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  445 (582)
                      ....+-.++  .+.......++...++|+-+.-.++++.+++.+..+|.....++++|.+.|...++..++.+.=++|++
T Consensus        75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            444444443  244455666788888999999999999988877668889999999999999999999999998888874

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.17  E-value=0.42  Score=35.75  Aligned_cols=84  Identities=6%  Similarity=-0.060  Sum_probs=61.9

Q ss_pred             cCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHH
Q 007998          156 VGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEY  235 (582)
Q Consensus       156 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~  235 (582)
                      |+++......|-.+. .+....+..++...++|+-+.-.++++.+.+.+  +|++.....+..||.+.|+..++..++.+
T Consensus        69 C~Nlk~vv~C~~~~n-~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~--~i~~~~llkia~A~kkig~~re~nell~~  145 (161)
T d1wy6a1          69 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIE  145 (161)
T ss_dssp             CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            444444444443332 233445666788889999999999999977766  88899999999999999999999999999


Q ss_pred             HHHcCCC
Q 007998          236 IREERLD  242 (582)
Q Consensus       236 ~~~~~~~  242 (582)
                      .-+.|..
T Consensus       146 ACe~G~K  152 (161)
T d1wy6a1         146 ACKKGEK  152 (161)
T ss_dssp             HHHTTCH
T ss_pred             HHHHhHH
Confidence            8888754

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.83  E-value=0.33  Score=37.31  Aligned_cols=59  Identities=10%  Similarity=-0.055  Sum_probs=27.4

Q ss_pred             ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007998          189 LASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLGAWKEGDKIHEYIREERLDMNVVVCNAVIDMYA  256 (582)
Q Consensus       189 ~~~~A~~~~~~m~~~g~~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~  256 (582)
                      ++++|++.|.+..+.|.  +...  ..+.  .....+.++|.+.+.+..+.|   +......|..+|.
T Consensus         8 d~~~A~~~~~kaa~~g~--~~a~--~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~   66 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE--MFGC--LSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYE   66 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC--TTHH--HHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC--hhhh--hhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhh
Confidence            45666666666666552  2221  1111  122344555555555555544   3333344444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.52  E-value=0.23  Score=38.34  Aligned_cols=50  Identities=10%  Similarity=-0.021  Sum_probs=32.4

Q ss_pred             CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007998          393 GDVEMAEIASRKLVEMGSNNCGDFVLLSNLYAA----YERWDDVGRVRKAMKNRDV  444 (582)
Q Consensus       393 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~  444 (582)
                      .+.++|.+.|++..+.+  ++.+...|+.+|..    ..+.++|.+.+++..+.|.
T Consensus        73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            45677777777776654  34566667777665    3467777777777666554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.48  E-value=0.33  Score=36.57  Aligned_cols=47  Identities=4%  Similarity=-0.060  Sum_probs=25.2

Q ss_pred             hHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007998          395 VEMAEIASRKLVEMGSNNC-GDFVLLSNLYAAYERWDDVGRVRKAMKN  441 (582)
Q Consensus       395 ~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~  441 (582)
                      .++|+.+++++.+.+|.+. ..+..|+.+|.+.|++++|.+.++.+.+
T Consensus        54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3455555555555555432 3445555555555555555555555544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=3.8  Score=38.61  Aligned_cols=357  Identities=11%  Similarity=-0.009  Sum_probs=179.6

Q ss_pred             CCHHHHHHHHhcCCCCChhH---HHHHHHHHHcCCCchHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 007998           56 NELAYAHALFRQINAPSTND---FNAVLRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHS  132 (582)
Q Consensus        56 g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  132 (582)
                      ...++...+++.-|. .+..   -..-+..+.+.+++...+..+.     ..+++...-...+.+....|+.+.|.+...
T Consensus        53 ~~~~~i~~Fl~~~p~-~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~  126 (450)
T d1qsaa1          53 QPAVTVTNFVRANPT-LPPARTLQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAK  126 (450)
T ss_dssp             CCHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            456666666665442 1111   1222445556666655433321     112233333344555556666666665555


Q ss_pred             HHHHcCC-C----------------CchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHH
Q 007998          133 HVLRHGF-L----------------ADALLGTTLLDVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVD  195 (582)
Q Consensus       133 ~~~~~g~-~----------------~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~  195 (582)
                      .+-..|. .                .+...+-.-+......|+...|..+...++..........+.....   ...+..
T Consensus       127 ~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~  203 (450)
T d1qsaa1         127 ELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLT  203 (450)
T ss_dssp             HHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHH
T ss_pred             HHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHH
Confidence            4444331 1                1222222234445556667777777766655444444555544332   222222


Q ss_pred             HHHHHHHcCCCCCCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHcCCCCchhHH---HHHHHHHHhcCCHHHHHHHHhc
Q 007998          196 LFKRMKMEGVFKPNEVTVLGALAACGH--LGAWKEGDKIHEYIREERLDMNVVVC---NAVIDMYAKCGLLDKAFEVFDN  270 (582)
Q Consensus       196 ~~~~m~~~g~~~pd~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~y~~~g~~~~A~~~~~~  270 (582)
                      ....   .   .++......+..+..+  ..+.+.+...+...............   ..+.......+..+.+...++.
T Consensus       204 ~~~~---~---~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~  277 (450)
T d1qsaa1         204 FART---T---GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDD  277 (450)
T ss_dssp             HHHH---S---CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHH
T ss_pred             HHhc---C---CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence            2111   1   3333333333333333  24667777777766654322221111   1222222334556667666654


Q ss_pred             cc-CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhHcCCccChhh
Q 007998          271 IK-CRKSLVTWNTMVMAFAVHGDGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMANCGVKPNMKH  349 (582)
Q Consensus       271 ~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~~~~~~~~~~  349 (582)
                      .. ...+.....-.+......+++..+...++.|... ......-.--+..+....|+.+.|..+|..+..   .++  -
T Consensus       278 ~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--f  351 (450)
T d1qsaa1         278 AIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--F  351 (450)
T ss_dssp             HHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--H
T ss_pred             hcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--h
Confidence            43 1233333333444455667888888888876432 122233344566778888888888888888764   233  3


Q ss_pred             HHhhhhHHhhcCCHHHHHHHH-HhCCCCCC-HHH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007998          350 YGSVVDLLGRAGRLQEACDIV-KSVSMGTD-MVL---WQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLLSNLYA  424 (582)
Q Consensus       350 ~~~li~~~~~~g~~~~A~~~~-~~~~~~p~-~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  424 (582)
                      |..|...  +.|..-   .+- ...+..++ ...   -..-+..+...|....|...+..+.+..  ++.-...++....
T Consensus       352 YG~LAa~--~Lg~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~  424 (450)
T d1qsaa1         352 YPMVAAQ--RIGEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAF  424 (450)
T ss_dssp             HHHHHHH--HTTCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHH
T ss_pred             HHHHHHH--HcCCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence            3333211  111100   000 00011111 111   0122345678899999999998886543  4567778888888


Q ss_pred             hcCCchHHHHHHHHHH
Q 007998          425 AYERWDDVGRVRKAMK  440 (582)
Q Consensus       425 ~~g~~~~a~~~~~~m~  440 (582)
                      +.|.++.|+....+..
T Consensus       425 ~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         425 NNQWWDLSVQATIAGK  440 (450)
T ss_dssp             HTTCHHHHHHHHHHTT
T ss_pred             HCCChhHHHHHHHHHH
Confidence            9999999988776554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.69  E-value=1.4  Score=32.89  Aligned_cols=64  Identities=17%  Similarity=0.026  Sum_probs=44.7

Q ss_pred             hhhHHhhcC---CHHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhH
Q 007998          353 VVDLLGRAG---RLQEACDIVKSV-SMGT-D-MVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDF  416 (582)
Q Consensus       353 li~~~~~~g---~~~~A~~~~~~~-~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~  416 (582)
                      ..-++.+..   +.+++..++++. ...| + ...|..|.-+|.+.|++++|.+.++++++.+|++..+.
T Consensus        41 YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          41 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            344444433   345666666665 2233 3 35677788889999999999999999999999886543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.48  E-value=4.6  Score=28.38  Aligned_cols=48  Identities=10%  Similarity=0.096  Sum_probs=37.4

Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCchhHHHH
Q 007998          372 SVSMGTDMVLWQTLLGACQLYGDVEMAEIASRKLVEMGSNNCGDFVLL  419 (582)
Q Consensus       372 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l  419 (582)
                      .+..-|++.+..+.+.+|++.+++..|.++++-+...--.+...|-.+
T Consensus        34 ~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yi   81 (105)
T d1v54e_          34 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV   81 (105)
T ss_dssp             TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            345678999999999999999999999999998876543334455444

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.28  E-value=7.5  Score=27.25  Aligned_cols=61  Identities=21%  Similarity=0.287  Sum_probs=48.2

Q ss_pred             ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhH-cCCccChhhHHhhh
Q 007998          292 DGPRALELFEQMGRAGVKPDDVSYLAALCACNHAGLVDDGVRLFNSMAN-CGVKPNMKHYGSVV  354 (582)
Q Consensus       292 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li  354 (582)
                      +.-++.+-++.+....+.|+.....+.|.||.+.+++..|.++|+-... .|  ++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHH
Confidence            4456677777777778899999999999999999999999999998886 43  3455666554