Citrus Sinensis ID: 008153

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570------

MKRDHQHSYGGGSGSGKGDYSSSTGNANKAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYPQPDSETENNRNKRMRVEINTANTNTIIPTELARPVVVDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAKSTLVS

ccccccccccccccccccccccccccccccccHHHHHccccccHHHHHcccccccccHHHHHHHHcccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHccccHHHHHHHcccccEEEEEcccccccccHHHHHHHHccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccEEEEEEEccccccccccccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEEEEccEEEEEEcccEEEEEEccccccccccc

ccccHHcccccccccccccccccccccccccccccccccccHHHHHHHHcccEccHHHHHHHHHHHHHHHHHccccccccHHcccccEEccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEccHHcccHHHcccccccccEEEEEHHHHHHcccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEEcccEEEEcccccEEEEEEccccccccEcc

mkrdhqhsygggsgsgkgdyssstgnanKAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGishlatdtvhynpsdvsGWVQSMLEGlnntgfdsqarpiqdpaesstvnsilgqqtsnqsrifnddseydlraipgsaaypqpdsetennrNKRMRVEINtantntiiptelarpvvvdsqETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRiypqdcldssyndiLQMHfyetcpylkfahFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALalrpggppafrltgigppqpdntdALQQVGWKLAQLADTIGVEFEFRGFvcnsladlepdmldirppeveTVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQeanhnspvfLDRFTEALHYYSSLFdslegsgltppsqdqvMSEVYLGRQICnivacdgtdrnerhETLTQWRTRlgsagfepvhlgsNAYKQASMLLALFaggdgyrveenngclmlgwhtrplIATSAWQLAKSTLVS

mkrdhqhsygggsgsgkgdyssSTGNANKAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAipgsaaypqpdsetennrnkrmRVEINtantntiiptelarpVVVDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRllarpggiekvVSSIKAMRPKIITIVeqeanhnsPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIvacdgtdrneRHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAKSTLVS

MKRDHQHsygggsgsgkgdysssTGNANKAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYPQPDSETENNRNKRMRVEintantntiiPTELARPVVVDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAKSTLVS

********************************************LLEVLGYKV****************MVMG****DGISHLATDTVHYNPSDVSGWVQSMLE*************************************************************************INTANTNTIIPTELARPVVVDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGI********DALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLE***********VMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLA******

**********************************************EVLGYKVRSSEMADVAQKLE***************HLATDTVHYNPSDV***************************************************************************************************************VHTLMACAEAIQQENLKVADALVKHIGLLAA***GAMRKVATYFAEALARRIYRIYP**CL**SYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAKSTL**

****************************KAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAY**********RNKRMRVEINTANTNTIIPTELARPVVVDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAKSTLVS

***************************************GGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNN**************************************EYDLRAIPGSAAYP********************************RPVVVDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAKSTL**

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKRDHQHSYGGGSGSGKGDYSSSTGNANKAKMWEEEQDTGGMDELLEVLGYKVRSSExxxxxxxxxxxxxxxxxxxxxGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYPQPDSETENNRNKRMRVEINTANTNTIIPTELARPVVVDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQLAKSTLVS

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		576	2.2.26 [Sep-21-2011]
Q84TQ7		537	DELLA protein GAI OS=Goss	N/A	no	0.909	0.975	0.737	0.0
Q7Y1B6		588	DELLA protein GAI OS=Sola	N/A	no	0.939	0.920	0.687	0.0
Q8S4W7		590	DELLA protein GAI1 OS=Vit	no	no	0.961	0.938	0.659	0.0
Q6EI06		579	DELLA protein GAIP OS=Cuc	N/A	no	0.984	0.979	0.640	0.0
Q6EI05		587	DELLA protein GAIP-B OS=C	N/A	no	0.980	0.962	0.639	0.0
Q9LQT8		533	DELLA protein GAI OS=Arab	yes	no	0.899	0.971	0.627	0.0
Q5BN22		579	DELLA protein RGA2 OS=Bra	N/A	no	0.949	0.944	0.600	0.0
Q9SLH3		587	DELLA protein RGA OS=Arab	no	no	0.963	0.945	0.614	0.0
Q5BN23		573	DELLA protein RGA1 OS=Bra	N/A	no	0.954	0.959	0.608	0.0
Q9C8Y3		511	DELLA protein RGL1 OS=Ara	no	no	0.840	0.947	0.648	0.0

>sp\|Q84TQ7\|GAI_GOSHI DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1	Back alignment and function desciption

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/567 (73%), Positives = 462/567 (81%), Gaps = 43/567 (7%)

Query: 1   MKRDHQHSYGGGSGSGKGDYSSSTGNANKAKMWEEEQDTGGMD-ELLEVLGYKVRSSEMA 59
           MKRDHQ   G GS   +   SSS     K K+WEE+ D GGMD ELL VLGYKVRSS+MA
Sbjct: 1   MKRDHQEISGSGSNPAE---SSSI----KGKLWEEDPDAGGMDDELLAVLGYKVRSSDMA 53

Query: 60  DVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQ 119
           DVAQKLE LE VMGTAQEDGIS L  DTVH+NPSD+SGWVQ++L   N +          
Sbjct: 54  DVAQKLEMLEKVMGTAQEDGISQLG-DTVHFNPSDLSGWVQNLLIEFNGS---------- 102

Query: 120 DPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYP--QPDSETENNRNKRMRVE 177
                          T+     FNDDSEYDLRAIPG AAYP  + D   E  R KR + E
Sbjct: 103 ---------------TTTPDPNFNDDSEYDLRAIPGVAAYPPVKSDPGLEITR-KRAKTE 146

Query: 178 INTANTNTIIPTELARPVV-VDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLA 236
            ++++++T       RPVV +DSQE GV+LVHTLMACAEA+QQ+NLK+ADALVKHIGLLA
Sbjct: 147 SSSSSSSTT-----TRPVVLIDSQEAGVRLVHTLMACAEAVQQDNLKLADALVKHIGLLA 201

Query: 237 AAQAGAMRKVATYFAEALARRIYRIYPQDCLDSSYNDILQMHFYETCPYLKFAHFTANQA 296
           ++Q GAMRKVATYFAEALARRIYRI+P D LD SYND LQ+ FYETCPYLKFAHFTANQA
Sbjct: 202 SSQTGAMRKVATYFAEALARRIYRIFPPDSLDPSYNDKLQIPFYETCPYLKFAHFTANQA 261

Query: 297 ILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQV 356
           ILEAF+ A+RVHVIDF LKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQV
Sbjct: 262 ILEAFSMASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQV 321

Query: 357 GWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGG 416
           GWKLAQLA+ IG+EFEFRGFV NSLADLEP+MLDIRPPE+E VAVN+VFELH LLARPGG
Sbjct: 322 GWKLAQLAERIGIEFEFRGFVANSLADLEPEMLDIRPPEIEVVAVNAVFELHPLLARPGG 381

Query: 417 IEKVVSSIKAMRPKIITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQ 476
           IEKVVSSIKAM+PKI+T+VEQEANHN PVFLDRFTEALHYYS+LFDSLEGSG+ P SQD 
Sbjct: 382 IEKVVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLEGSGVAPASQDL 441

Query: 477 VMSEVYLGRQICNIVACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLAL 536
            MSE+YLGRQICN+VAC+G DR ERHE LTQWRTR+ +AG  PVHLGSNAYKQASMLLAL
Sbjct: 442 AMSELYLGRQICNVVACEGMDRVERHEPLTQWRTRMETAGVSPVHLGSNAYKQASMLLAL 501

Query: 537 FAGGDGYRVEENNGCLMLGWHTRPLIA 563
           FA GDGYRVEENNGCLMLGWHTRPLIA
Sbjct: 502 FASGDGYRVEENNGCLMLGWHTRPLIA 528

Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Gossypium hirsutum (taxid: 3635)

>sp\|Q7Y1B6\|GAI_SOLLC DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1	Back alignment and function description

>sp\|Q8S4W7\|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1	Back alignment and function description

>sp\|Q6EI06\|GAIP_CUCMA DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1	Back alignment and function description

>sp\|Q6EI05\|GAIPB_CUCMA DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1	Back alignment and function description

>sp\|Q9LQT8\|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1	Back alignment and function description

>sp\|Q5BN22\|RGA2_BRACM DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1	Back alignment and function description

>sp\|Q9SLH3\|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1	Back alignment and function description

>sp\|Q5BN23\|RGA1_BRACM DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1	Back alignment and function description

>sp\|Q9C8Y3\|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		576
224069420		620	DELLA domain GRAS family transcription f	0.984	0.914	0.737	0.0
224077280		607	DELLA domain GRAS family transcription f	0.972	0.922	0.733	0.0
255586838		567	DELLA protein GAI, putative [Ricinus com	0.961	0.977	0.760	0.0
225451399		613	PREDICTED: DELLA protein GAI1-like isofo	0.939	0.882	0.753	0.0
66816747		584	DELLA protein [Malus x domestica]	0.984	0.970	0.752	0.0
372477834		584	spur-type DELLA protein [Malus x domesti	0.984	0.970	0.752	0.0
147812753		580	hypothetical protein VITISV_036639 [Viti	0.934	0.927	0.754	0.0
372477832		580	spur-type DELLA protein [Malus x domesti	0.980	0.974	0.747	0.0
152968454		580	DELLA protein [Malus hupehensis]	0.980	0.974	0.747	0.0
66816739		580	DELLA protein [Malus x domestica]	0.980	0.974	0.744	0.0

>gi\|224069420\|ref\|XP_002302975.1\| DELLA domain GRAS family transcription factor rga-like protein [Populus trichocarpa] gi\|222844701\|gb\|EEE82248.1\| DELLA domain GRAS family transcription factor rga-like protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/605 (73%), Positives = 498/605 (82%), Gaps = 38/605 (6%)

Query: 1   MKRDHQHSYGGGSGS--GKGDYSSSTGNANKAKMW-EEEQDTGGMDELLEVLGYKVRSSE 57
           MKRDHQ + GG   S   K + SSS+    K K+W E++QD GGMDELL VLGYK++SSE
Sbjct: 1   MKRDHQETIGGAGNSIGNKAESSSSSMATGKGKLWVEDDQDAGGMDELLAVLGYKIKSSE 60

Query: 58  MADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLEGLNN---TGFDSQ 114
           MADVAQKLEQLEMV+G+  EDGISHLA+DTVHYNPSD+SGWVQSML  LNN   +  DS 
Sbjct: 61  MADVAQKLEQLEMVLGS--EDGISHLASDTVHYNPSDLSGWVQSMLSELNNLPSSDLDSS 118

Query: 115 ARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYPQPDSETENNRNKRM 174
                +   + +  + L    ++QS+ F DDSEYDLRAIPG AAYPQ + +  N+R KRM
Sbjct: 119 TLLSNNQDSNPSTMTSLDFPNNSQSKAFVDDSEYDLRAIPGVAAYPQQEFDKSNDR-KRM 177

Query: 175 RVEINTANTNTIIP---------------------------TELARPVV-VDSQETGVQL 206
           ++ +  +NT   +                            +E  RPVV +DSQETGV+L
Sbjct: 178 KLTLVGSNTAPTLAVNSLQSSNSSCTPSSSPQAIMAVSGTLSEPTRPVVLIDSQETGVRL 237

Query: 207 VHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQD- 265
           VHTL+ACAEAIQQENLK+ADALVKHIG+LAA+QAGAMRKVATYFAEALARRIY+I+PQD 
Sbjct: 238 VHTLLACAEAIQQENLKLADALVKHIGVLAASQAGAMRKVATYFAEALARRIYKIFPQDH 297

Query: 266 CLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQ 325
           CLDSSY+D L+MHFYETCPYLKFAHFTANQAILEAF NA+RVHVIDF LKQGMQWPALMQ
Sbjct: 298 CLDSSYSDTLEMHFYETCPYLKFAHFTANQAILEAFANASRVHVIDFGLKQGMQWPALMQ 357

Query: 326 ALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLADLE 385
           ALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLA TIGVEFEFRGFV +SLADLE
Sbjct: 358 ALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAQTIGVEFEFRGFVASSLADLE 417

Query: 386 PDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPKIITIVEQEANHNSPV 445
            +MLD+RPPEVE VAVNSVFELHRLL RPGGI+KV+ SIKAMRPKI+TIVEQEANHN PV
Sbjct: 418 AEMLDLRPPEVEAVAVNSVFELHRLLDRPGGIDKVLGSIKAMRPKIVTIVEQEANHNGPV 477

Query: 446 FLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVACDGTDRNERHETL 505
           FLDRFTEALHYYSSLFDSLEGSG+TP SQD VMSE+YLGRQICN+VAC+G DR ERHETL
Sbjct: 478 FLDRFTEALHYYSSLFDSLEGSGVTPTSQDLVMSELYLGRQICNVVACEGADRVERHETL 537

Query: 506 TQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATS 565
            QWRTR  SAGF+PVHLGSNA+KQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATS
Sbjct: 538 AQWRTRFDSAGFDPVHLGSNAFKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATS 597

Query: 566 AWQLA 570
           AWQLA
Sbjct: 598 AWQLA 602

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224077280\|ref\|XP_002305198.1\| DELLA domain GRAS family transcription factor [Populus trichocarpa] gi\|222848162\|gb\|EEE85709.1\| DELLA domain GRAS family transcription factor [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255586838\|ref\|XP_002534030.1\| DELLA protein GAI, putative [Ricinus communis] gi\|223525955\|gb\|EEF28350.1\| DELLA protein GAI, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225451399\|ref\|XP_002266267.1\| PREDICTED: DELLA protein GAI1-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|66816747\|gb\|AAY56750.1\| DELLA protein [Malus x domestica]	Back alignment and taxonomy information

>gi\|372477834\|gb\|AEX97111.1\| spur-type DELLA protein [Malus x domestica]	Back alignment and taxonomy information

>gi\|147812753\|emb\|CAN59753.1\| hypothetical protein VITISV_036639 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|372477832\|gb\|AEX97110.1\| spur-type DELLA protein [Malus x domestica]	Back alignment and taxonomy information

>gi\|152968454\|gb\|ABS50250.1\| DELLA protein [Malus hupehensis]	Back alignment and taxonomy information

>gi\|66816739\|gb\|AAY56749.1\| DELLA protein [Malus x domestica]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		576
TAIR\|locus:2006747		533	GAI "GIBBERELLIC ACID INSENSIT	0.737	0.797	0.672	8.7e-184
TAIR\|locus:2099624		547	RGL2 "RGA-like 2" [Arabidopsis	0.729	0.767	0.677	4.1e-175
TAIR\|locus:2005516		587	RGA1 "REPRESSOR OF GA1-3 1" [A	0.982	0.964	0.596	1.1e-174
TAIR\|locus:2201557		511	RGL1 "RGA-like 1" [Arabidopsis	0.678	0.765	0.687	3.3e-171
TAIR\|locus:2157477		523	RGL3 "RGA-like protein 3" [Ara	0.859	0.946	0.564	1.3e-139
TAIR\|locus:2164783		490	PAT1 "AT5G48150" [Arabidopsis	0.612	0.720	0.366	1.2e-60
TAIR\|locus:2080345		653	SCR "SCARECROW" [Arabidopsis t	0.612	0.540	0.369	1.9e-58
TAIR\|locus:2008076		597	SCL5 "AT1G50600" [Arabidopsis	0.611	0.589	0.360	3.2e-58
TAIR\|locus:2044973		413	SCL21 "AT2G04890" [Arabidopsis	0.628	0.876	0.347	7.8e-55
TAIR\|locus:2020487		445	LAS "AT1G55580" [Arabidopsis t	0.548	0.710	0.353	4.8e-54

TAIR\|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1532 (544.3 bits), Expect = 8.7e-184, Sum P(2) = 8.7e-184
 Identities = 296/440 (67%), Positives = 349/440 (79%)

Query:   143 NDDSEYDLRAIPGSAAYPQ--PDSETENNR---------NKRMRVEXXXXXXXXXXPTEL 191
             + ++EYDL+AIPG A   Q   DS + +N+         NKR++                
Sbjct:    95 SSNAEYDLKAIPGDAILNQFAIDSASSSNQGGGGDTYTTNKRLKCSNGVVETTTATAEST 154

Query:   192 ARPVVVDSQETGVQLVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFA 251
                V+VDSQE GV+LVH L+ACAEA+Q+ENL VA+ALVK IG LA +Q GAMRKVATYFA
Sbjct:   155 RHVVLVDSQENGVRLVHALLACAEAVQKENLTVAEALVKQIGFLAVSQIGAMRKVATYFA 214

Query:   252 EALARRIYRIYP-QDCLDSSYNDILQMHFYETCPYLKFAHFTANQAILEAFNNANRVHVI 310
             EALARRIYR+ P Q  +D S +D LQMHFYETCPYLKFAHFTANQAILEAF    RVHVI
Sbjct:   215 EALARRIYRLSPSQSPIDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFQGKKRVHVI 274

Query:   311 DFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVE 370
             DFS+ QG+QWPALMQALALRPGGPP FRLTGIGPP PDN D L +VG KLA LA+ I VE
Sbjct:   275 DFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNFDYLHEVGCKLAHLAEAIHVE 334

Query:   371 FEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSIKAMRPK 430
             FE+RGFV N+LADL+  ML++RP E+E+VAVNSVFELH+LL RPG I+KV+  +  ++P+
Sbjct:   335 FEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKLLGRPGAIDKVLGVVNQIKPE 394

Query:   431 IITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNI 490
             I T+VEQE+NHNSP+FLDRFTE+LHYYS+LFDSLEG    P  QD+VMSEVYLG+QICN+
Sbjct:   395 IFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEG---VPSGQDKVMSEVYLGKQICNV 451

Query:   491 VACDGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNG 550
             VACDG DR ERHETL+QWR R GSAGF   H+GSNA+KQASMLLALF GG+GYRVEE++G
Sbjct:   452 VACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGEGYRVEESDG 511

Query:   551 CLMLGWHTRPLIATSAWQLA 570
             CLMLGWHTRPLIATSAW+L+
Sbjct:   512 CLMLGWHTRPLIATSAWKLS 531

GO:0005634 "nucleus" evidence=ISM;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010233 "phloem transport" evidence=IMP

GO:0009651 "response to salt stress" evidence=IGI

GO:0009723 "response to ethylene stimulus" evidence=IGI;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IGI;RCA

GO:0042538 "hyperosmotic salinity response" evidence=IGI;RCA

GO:0010029 "regulation of seed germination" evidence=IGI

GO:2000033 "regulation of seed dormancy process" evidence=IGI

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0010187 "negative regulation of seed germination" evidence=IGI

GO:0010218 "response to far red light" evidence=IEP

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IGI

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IGI;RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI;RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010325 "raffinose family oligosaccharide biosynthetic process" evidence=RCA

GO:0048444 "floral organ morphogenesis" evidence=RCA

GO:0006808 "regulation of nitrogen utilization" evidence=IMP

TAIR\|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2020487 LAS "AT1G55580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7Y1B6	GAI_SOLLC	No assigned EC number	0.6871	0.9392	0.9200	N/A	no
Q6EI05	GAIPB_CUCMA	No assigned EC number	0.6397	0.9809	0.9625	N/A	no
Q8W127	SLN1_HORVU	No assigned EC number	0.5906	0.9184	0.8559	N/A	no
Q5BN22	RGA2_BRACM	No assigned EC number	0.6003	0.9496	0.9447	N/A	no
Q5BN23	RGA1_BRACM	No assigned EC number	0.6084	0.9548	0.9598	N/A	no
Q6EI06	GAIP_CUCMA	No assigned EC number	0.6405	0.9843	0.9792	N/A	no
Q9ST59	RHT1_WHEAT	No assigned EC number	0.5887	0.9166	0.8475	N/A	no
Q84TQ7	GAI_GOSHI	No assigned EC number	0.7372	0.9097	0.9757	N/A	no
Q9LQT8	GAI_ARATH	No assigned EC number	0.6272	0.8993	0.9718	yes	no
Q9ST48	DWRF8_MAIZE	No assigned EC number	0.5857	0.9149	0.8365	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GRAS87	DELLA domain GRAS family transcription factor rga-like protein (554 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		576
pfam03514		372	pfam03514, GRAS, GRAS family transcription factor	1e-180
pfam12041		74	pfam12041, DELLA, Transcriptional regulator DELLA	1e-37

>gnl\|CDD\|217595 pfam03514, GRAS, GRAS family transcription factor	Back alignment and domain information

 Score =  513 bits (1323), Expect = e-180
 Identities = 188/374 (50%), Positives = 242/374 (64%), Gaps = 15/374 (4%)

Query: 206 LVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQD 265
           LVH L+ACAEA+   +L +A A++  +  LA+     M+++A YF EALA R+ R     
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 266 C---------LDSSYNDILQMH-FYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLK 315
                        S   +     FYE  PYLKF HFTANQAILEAF    RVH+IDF + 
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDFDIG 120

Query: 316 QGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRG 375
           QG+QWP+L+QALA RPGGPP  R+TGIG PQ  + + L++ G +LAQ AD++GV FEF  
Sbjct: 121 QGLQWPSLIQALASRPGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSLGVPFEFNP 180

Query: 376 FVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEK--VVSSIKAMRPKIIT 433
            V   L DL+ +MLD+RP   E +AVN VF LHRLL     +E    +  +K++ PK++T
Sbjct: 181 LVAKRLEDLDLEMLDVRPG--EALAVNCVFALHRLLDESVSLESPTFLRLVKSLNPKVVT 238

Query: 434 IVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSEVYLGRQICNIVAC 493
           +VEQEANHNS  FL RF EALHYYS+LFDSLE +      + + +    LGR+I N+VAC
Sbjct: 239 LVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREIVNVVAC 298

Query: 494 DGTDRNERHETLTQWRTRLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLM 553
           +G +R ERHET  +WR R+  AGF PV L   A KQA +LL L+   DGYRVEE+NG L+
Sbjct: 299 EGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLY-YVDGYRVEEDNGSLV 357

Query: 554 LGWHTRPLIATSAW 567
           LGW  RPL+A SAW
Sbjct: 358 LGWKGRPLVAASAW 371

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

>gnl\|CDD\|221390 pfam12041, DELLA, Transcriptional regulator DELLA protein N terminal	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		576
PF03514		374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	100.0
PF12041		73	DELLA: Transcriptional regulator DELLA protein N t	100.0
PRK15451		247	tRNA cmo(5)U34 methyltransferase; Provisional	96.33
TIGR00740		239	methyltransferase, putative. A simple BLAST search	94.27
TIGR02716		306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	94.19
TIGR02752		231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	92.62
PLN02233		261	ubiquinone biosynthesis methyltransferase	90.22
PF12847		112	Methyltransf_18: Methyltransferase domain; PDB: 3G	88.85
PRK14103		255	trans-aconitate 2-methyltransferase; Provisional	86.49
PF13489		161	Methyltransf_23: Methyltransferase domain; PDB: 3J	84.86
TIGR00477		195	tehB tellurite resistance protein TehB. Part of a	84.13
PF13847		152	Methyltransf_31: Methyltransferase domain; PDB: 3T	81.81

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []	Back alignment and domain information

Probab=100.00  E-value=8.3e-110  Score=882.47  Aligned_cols=359  Identities=51%  Similarity=0.904  Sum_probs=333.4

Q ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHchhccCCCChhhHHHHHHHHHHHHHHhccCCCCC-----CCC---CHHHH--H
Q 008153          206 LVHTLMACAEAIQQENLKVADALVKHIGLLAAAQAGAMRKVATYFAEALARRIYRIYPQDC-----LDS---SYNDI--L  275 (576)
Q Consensus       206 Lv~LLlaCAeAV~~gd~~~A~~lL~~i~~las~~g~~~qRlA~yFaeAL~~Rl~~~~p~~~-----~~~---s~~~~--l  275 (576)
                      |+|||++||+||+.||...|+.+|++|++++|++|+|+||||+||++||++||.+.+++..     ...   ...+.  .
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999655311     111   12222  2


Q ss_pred             HHHHHhhcchhhHHHHHHHHHHHHhhccCCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHH
Q 008153          276 QMHFYETCPYLKFAHFTANQAILEAFNNANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQ  355 (576)
Q Consensus       276 ~~~fye~~P~~kfahftANqAILEA~~g~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~e  355 (576)
                      +..||+.|||+||||||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||++|.+.+.+.+++
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~  160 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQE  160 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHH
Confidence            34599999999999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             HHHHHHHHHhHcCceeEEeeeecCCCCCCCccccccCCCCCceEEEEehhhhhhccCCC----ChHHHHHHHHHhcCCcE
Q 008153          356 VGWKLAQLADTIGVEFEFRGFVCNSLADLEPDMLDIRPPEVETVAVNSVFELHRLLARP----GGIEKVVSSIKAMRPKI  431 (576)
Q Consensus       356 tG~rL~~fA~slgVpFeF~~v~~~~ledl~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~----~~~d~vL~~Ir~L~PkI  431 (576)
                      ||+||.+||+++||||||++|+..+++++++++|+++++  |+|||||+|+||||++.+    ++++.||+.||+|+|+|
T Consensus       161 ~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~--E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v  238 (374)
T PF03514_consen  161 TGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPG--EALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV  238 (374)
T ss_pred             HHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCC--cEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence            999999999999999999998889999999999999976  999999999999999643    36889999999999999


Q ss_pred             EEEEecCCCCCCchhHHHHHHHHHHHHHHhhhhhccCCCCCcHHHHHHH-HHhhcccchhhcccCCCCcccccchhhHHH
Q 008153          432 ITIVEQEANHNSPVFLDRFTEALHYYSSLFDSLEGSGLTPPSQDQVMSE-VYLGRQICNIVACDGTDRNERHETLTQWRT  510 (576)
Q Consensus       432 vtlvEqeanhNsp~F~~RF~EAL~yYsalFDSLea~~~~~~s~~r~~~E-~~lgreI~NiVAcEG~eRvERhE~~~qWr~  510 (576)
                      ||++|+|+|||+|+|++||.|||+||+++|||||+++ ++.+.+|...| .+||+||+|||||||.+|+||||++++|+.
T Consensus       239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~-~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~  317 (374)
T PF03514_consen  239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACL-PRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRR  317 (374)
T ss_pred             EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHH
Confidence            9999999999999999999999999999999999997 44556776555 569999999999999999999999999999


Q ss_pred             HHhcCCCccccCChHHHHHHHHHHHhcCCCCCcEEEeeCcEEEEeeCCceeEEEeecc
Q 008153          511 RLGSAGFEPVHLGSNAYKQASMLLALFAGGDGYRVEENNGCLMLGWHTRPLIATSAWQ  568 (576)
Q Consensus       511 Rm~~AGF~pv~ls~~a~~qA~~LL~~~~~~~gy~v~e~~g~L~LgWk~rpL~a~SAW~  568 (576)
                      ||.+|||+++|+|++++.||++||+.|+ ++||+|++++|||+||||++||+++||||
T Consensus       318 r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  318 RMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             HHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            9999999999999999999999999998 89999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling	Back alignment and domain information

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional	Back alignment and domain information

>TIGR00740 methyltransferase, putative	Back alignment and domain information

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU	Back alignment and domain information

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase	Back alignment and domain information

>PLN02233 ubiquinone biosynthesis methyltransferase	Back alignment and domain information

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A	Back alignment and domain information

>PRK14103 trans-aconitate 2-methyltransferase; Provisional	Back alignment and domain information

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C	Back alignment and domain information

>TIGR00477 tehB tellurite resistance protein TehB	Back alignment and domain information

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		576
2zsh_B		110	Structural Basis Of Gibberellin(Ga3)-Induced Della		1e-24

>pdb|2ZSH|B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor Length = 110

Back alignment and structure

Iteration: 1

Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 65/133 (48%), Positives = 76/133 (57%), Gaps = 33/133 (24%) Query: 29 KAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTV 88 K M EE D GMDELL VLGYKVRSSEMADVAQKLEQLE++M QED +S LAT+TV Sbjct: 11 KTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLATETV 70 Query: 89 HYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEY 148 HYNP+++ W+ SML LN P S+ +EY Sbjct: 71 HYNPAELYTWLDSMLTDLN-------------PPSSN--------------------AEY 97 Query: 149 DLRAIPGSAAYPQ 161 DL+AIPG A Q Sbjct: 98 DLKAIPGDAILNQ 110

PyMOL of 2zsh

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		576
2zsh_B		110	Della protein GAI; plant hormone receptor, gibbere	1e-41
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B* Length = 110	Back alignment and structure

 Score =  144 bits (365), Expect = 1e-41
 Identities = 63/141 (44%), Positives = 76/141 (53%), Gaps = 33/141 (23%)

Query: 21  SSSTGNANKAKMWEEEQDTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGI 80
             +     K  M  EE D  GMDELL VLGYKVRSSEMADVAQKLEQLE++M   QED +
Sbjct: 3   GYNEPQDKKTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDL 62

Query: 81  SHLATDTVHYNPSDVSGWVQSMLEGLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSR 140
           S LAT+TVHYNP+++  W+ SML  LN                                 
Sbjct: 63  SQLATETVHYNPAELYTWLDSMLTDLNPP------------------------------- 91

Query: 141 IFNDDSEYDLRAIPGSAAYPQ 161
             + ++EYDL+AIPG A   Q
Sbjct: 92  --SSNAEYDLKAIPGDAILNQ 110

PyMOL of 2zsh

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		576
2zsh_B		110	Della protein GAI; plant hormone receptor, gibbere	100.0
4gek_A		261	TRNA (CMO5U34)-methyltransferase; structural genom	97.05
3dtn_A		234	Putative methyltransferase MM_2633; structural gen	94.92
3bkx_A		275	SAM-dependent methyltransferase; YP_807781.1, cycl	94.06
4a6d_A		353	Hydroxyindole O-methyltransferase; melatonin, circ	93.56
3dp7_A		363	SAM-dependent methyltransferase; structural genomi	93.38
2aot_A		292	HMT, histamine N-methyltransferase; classic methyl	93.34
3dh0_A		219	SAM dependent methyltransferase; cystal structure,	93.09
3mcz_A		352	O-methyltransferase; adomet_mtases, S-adenosylmeth	92.63
2r3s_A		335	Uncharacterized protein; methyltransferase domain,	92.3
2ip2_A		334	Probable phenazine-specific methyltransferase; pyo	91.89
3mgg_A		276	Methyltransferase; NYSGXRC, PSI-II, protein struct	91.03
3dlc_A		219	Putative S-adenosyl-L-methionine-dependent methylt	90.12
3i53_A		332	O-methyltransferase; CO-complex, rossmann-like fol	90.0
3gwz_A		369	MMCR; methyltransferase, mitomycin, S-adenosyl met	88.83
3p9c_A		364	Caffeic acid O-methyltransferase; S-adenosylmethio	88.7
1qzz_A		374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	88.62
3f4k_A		257	Putative methyltransferase; structural genomics, P	88.53
1xxl_A		239	YCGJ protein; structural genomics, protein structu	88.39
3htx_A		950	HEN1; HEN1, small RNA methyltransferase, protein-R	88.3
3h2b_A		203	SAM-dependent methyltransferase; alpha-beta protei	87.6
3sm3_A		235	SAM-dependent methyltransferases; NESG, structural	87.49
3ujc_A		266	Phosphoethanolamine N-methyltransferase; parasite;	87.21
1x19_A		359	CRTF-related protein; methyltransferase, bacterioc	86.26
1vl5_A		260	Unknown conserved protein BH2331; putative methylt	86.21
4fsd_A		383	Arsenic methyltransferase; rossmann fold; 1.75A {C	85.44
2qe6_A		274	Uncharacterized protein TFU_2867; putative methylt	84.89
3lst_A		348	CALO1 methyltransferase; calicheamicin, enediyne,	84.31
3reo_A		368	(ISO)eugenol O-methyltransferase; directed evoluti	84.2
4dcm_A		375	Ribosomal RNA large subunit methyltransferase G; 2	83.72
3jwg_A		219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	83.2
3e23_A		211	Uncharacterized protein RPA2492; alpha-beta protei	83.04
3vc1_A		312	Geranyl diphosphate 2-C-methyltransferase; rossman	82.94
3jwh_A		217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	82.43
3giw_A		277	Protein of unknown function DUF574; rossmann-fold	81.93
1xtp_A		254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	81.19
3m70_A		286	Tellurite resistance protein TEHB homolog; structu	80.53

>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B*	Back alignment and structure

Probab=100.00  E-value=5.9e-53  Score=364.86  Aligned_cols=103  Identities=60%  Similarity=0.911  Sum_probs=58.9

Q ss_pred             CCccccchhhhh-ccCCchhhhhhcCCccccccHHHHHHHHHHHHHHhccccccccccccccccccCCCchhhHHHHhhh
Q 008153           26 NANKAKMWEEEQ-DTGGMDELLEVLGYKVRSSEMADVAQKLEQLEMVMGTAQEDGISHLATDTVHYNPSDVSGWVQSMLE  104 (576)
Q Consensus        26 ~~~~~~~~~~~~-~~~~~d~~la~~gykv~ssd~~~vaqkle~le~~m~~~~~d~~s~lasdtvhynpsdls~w~~sml~  104 (576)
                      .++|+|||+++. +++||||||||+|||||||||+||||||||||+|||++|+||+|||||||||||||||++||||||+
T Consensus         7 ~~~k~k~w~~~~~~~~g~DelLA~lGYkVrsSDma~vAQkLEqLE~vmg~a~~dgls~LasDTVHyNPSDLs~WvesMLs   86 (110)
T 2zsh_B            7 PQDKKTMMMNEEDDGNGMDELLAVLGYKVRSSEMADVAQKLEQLEVMMSNVQEDDLSQLATETVHYNPAELYTWLDSMLT   86 (110)
T ss_dssp             ----------------CBCHHHHTTTCBCBGGGHHHHHHHHHHHHHHHTTC-------CHHHHTTSCTTBHHHHHHHHHH
T ss_pred             CCchhhhccccccccccHHHHHHHcCccccchhHHHHHHHHHHHHHHHccccchhHHHhhhhhhcCChHHHHHHHHHHHH
Confidence            378999998643 7999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCcccccccccccCCCCccccCCCccccccCCCCCCCCCC
Q 008153          105 GLNNTGFDSQARPIQDPAESSTVNSILGQQTSNQSRIFNDDSEYDLRAIPGSAAYPQ  161 (576)
Q Consensus       105 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~ipg~a~~~~  161 (576)
                      ||||+.                                 ++++||||||||+|+|++
T Consensus        87 Eln~~~---------------------------------~~~~ydL~aIpg~a~y~~  110 (110)
T 2zsh_B           87 DLNPPS---------------------------------SNAEYDLKAIPGDAILNQ  110 (110)
T ss_dssp             TC-------------------------------------------------------
T ss_pred             HcCCCC---------------------------------CccccchhcCCcccccCC
Confidence            999751                                 134599999999999974

PyMOL of 2zsh

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*	Back alignment and structure

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}	Back alignment and structure

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}	Back alignment and structure

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*	Back alignment and structure

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}	Back alignment and structure

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*	Back alignment and structure

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}	Back alignment and structure

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}	Back alignment and structure

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}	Back alignment and structure

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}	Back alignment and structure

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}	Back alignment and structure

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}	Back alignment and structure

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*	Back alignment and structure

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*	Back alignment and structure

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*	Back alignment and structure

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*	Back alignment and structure

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*	Back alignment and structure

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*	Back alignment and structure

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}	Back alignment and structure

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}	Back alignment and structure

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}	Back alignment and structure

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*	Back alignment and structure

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*	Back alignment and structure

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41	Back alignment and structure

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A	Back alignment and structure

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}	Back alignment and structure

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}	Back alignment and structure

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*	Back alignment and structure

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}	Back alignment and structure

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A	Back alignment and structure

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}	Back alignment and structure

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*	Back alignment and structure

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A	Back alignment and structure

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*	Back alignment and structure

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42	Back alignment and structure

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		576
d1im8a_		225	Hypothetical protein HI0319 (YecO) {Haemophilus in	97.01
d1qzza2		256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	96.21
d1tw3a2		253	Carminomycin 4-O-methyltransferase {Streptomyces p	96.06
d2gh1a1		281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	92.51
d1ri5a_		252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	92.41
d1jqea_		280	Histamine methyltransferase {Human (Homo sapiens)	91.89
d1vlma_		208	Possible histamine N-methyltransferase TM1293 {The	91.38
d1xxla_		234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	90.69
d2i6ga1		198	Putative methyltransferase TehB {Salmonella typhim	89.18
d1fp2a2		244	Isoflavone O-methyltransferase {Alfalfa (Medicago	88.96
d1fp1d2		244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	87.43
d1nkva_		245	Hypothetical Protein YjhP {Escherichia coli [TaxId	87.11
d2fk8a1		280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	83.84
d1vl5a_		231	Hypothetical protein BH2331 {Bacillus halodurans [	83.37
d1ve3a1		226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	82.84
d2o57a1		282	Putative sarcosine dimethylglycine methyltransfera	82.69
d2ex4a1		222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	82.5

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.01  E-value=0.018  Score=52.71  Aligned_cols=107  Identities=14%  Similarity=0.215  Sum_probs=64.7

Q ss_pred             CCeeEEEecccCCCcchHHHHHHHhcCCCCCCeeeEeecCCCCCCChHHHHHHHHHHHHHHhHcCceeEEeeeecCCCCC
Q 008153          304 ANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLADTIGVEFEFRGFVCNSLAD  383 (576)
Q Consensus       304 ~~~VHIIDf~I~~G~QWpsLiqaLA~RpgGPP~LRITgI~~p~~~~~~~L~etG~rL~~fA~slgVpFeF~~v~~~~led  383 (576)
                      ...-||+|+|.|.|.    +...|+... ..|..++|||++    +...|+...+++.+..  ..+.+++..   ....+
T Consensus        38 ~~~~~vLDlGCGtG~----~~~~l~~~~-~~~~~~v~giD~----S~~ml~~A~~~~~~~~--~~~~~~~~~---~d~~~  103 (225)
T d1im8a_          38 TADSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDN----SQPMVERCRQHIAAYH--SEIPVEILC---NDIRH  103 (225)
T ss_dssp             CTTCEEEEESCTTCH----HHHHHHHTC-CCSSCEEEEECS----CHHHHHHHHHHHHTSC--CSSCEEEEC---SCTTT
T ss_pred             CCCCEEEEeccchhh----HHHHHHHhh-cCCCCceEEeCC----CHHHHHHHHHHhHhhc--ccchhhhcc---chhhc
Confidence            344589999999886    445555432 246789999994    4566766666665322  333444432   11111


Q ss_pred             CCccccccCCCCCceEEEEehhhhhhccCCCChHHHHHHHH-HhcCCcEEEEE
Q 008153          384 LEPDMLDIRPPEVETVAVNSVFELHRLLARPGGIEKVVSSI-KAMRPKIITIV  435 (576)
Q Consensus       384 l~~~~L~lr~~~~EaLaVN~~~~Lh~L~~~~~~~d~vL~~I-r~L~PkIvtlv  435 (576)
                             ...+  ..-+|-|.+.||++..  .....+|+.| |.|+|.-.+++
T Consensus       104 -------~~~~--~~d~i~~~~~l~~~~~--~d~~~~l~~i~~~LkpgG~li~  145 (225)
T d1im8a_         104 -------VEIK--NASMVILNFTLQFLPP--EDRIALLTKIYEGLNPNGVLVL  145 (225)
T ss_dssp             -------CCCC--SEEEEEEESCGGGSCG--GGHHHHHHHHHHHEEEEEEEEE
T ss_pred             -------cccc--cceeeEEeeeccccCh--hhHHHHHHHHHHhCCCCceeec
Confidence                   2222  4455666677888742  2456778777 77999986665

PyMOL of d1im8a_

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}	Back information, alignment and structure

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}	Back information, alignment and structure

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}	Back information, alignment and structure

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}	Back information, alignment and structure

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}	Back information, alignment and structure

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}	Back information, alignment and structure

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}	Back information, alignment and structure

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure