Citrus Sinensis ID: 008253

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570--
Protein Sequence
MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIYGTQAVSHSRDSGKSNLFVAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETERDDQNTKHGISSHAVDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNEESKTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLREPGDGRLLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDFSVKENSSDANQEGLDDAKMEEQIHGEADSETDRPTLVPCVSGKYYFLKSLFYQY
Secondary Structure (PSIPRED)
cHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHcccccccccccccccccccccccccccEEEcEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHccccccccHHHHHHcccccccccccEEEEEcccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccEEEEEEcHHcccHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHcccHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHcccEEEEEcccccccccccccccccHHcccccccccccccccccHcccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccHccccccccccccccccccccccEEccccccccccEEEcccccccccccEEEEccccccccccccccccEEEccccEEccccccccEcccccccccccccccccHHHHHHHcccccccccccccEEcccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHccccccEcEEEEEccccccEEEcccEEEEccccccccEEcccccccEEcccEccccccccHHcccccccccHHHHHHHHHHHHHcccccccccccEEccccEEEccccccEEEcccccccEccccHcHHHcccccccccccccccEcEccccEEEEHHHHHccc
Coil and Loop (DISEMBL)
MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRgknlilssgassvtelrgpydvanlSSLLGISMERAKAAVSKNCRALISNALRKKHFhretirvepissgeqfdskepwsgdwlkwdpissgegdlqldDMAESFtastkvsktvktINFASvidsipshsfrvndliygtqavshsrdsgksnlfvaganeksvasngvsenrrrldilhetdqnslhnaplnnqssscennresgspsafpetiintediesqptiieeddvaeksftaketerddqntkhgissHAVDLVLSKEivkcpaltgeielgaacnvdnklegdtlpdtfhssachneesktaessgvdfdsqnvamgevgmkidikdredasvaldnvsltdnvierEHFRELVDvvsgqnllqgshdemdnkngtsfanheTEVTMEELrdgerlrepgdgrllaDKISIQESCTEMIvkddssvanhEACEEVMVEKQkngvqfrepgerlitgqnlfldsskdfsvkenssdanqeglddakmeeqihgeadsetdrptlvpcvsgkyYFLKSLFYQY
Flexible Loop (DISEMBL)
mikaaiergvyfeLTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILssgassvtelrgPYDVANLSSLLGISMERAKAAVSKNCRALISNalrkkhfhretirvepissgeqfdskEPWSGDWLKWDPISSGEGDLQLDDMAESFTastkvsktvktinfasvidsipshsFRVNDLIYGTQAVSHSRDSGKSNLFVAganeksvasngvsenrRRLDILhetdqnslhnaplnnqsssCENNRESGSPSAFPETIintediesqptiieeddvAEKSFTAketerddqntkhgisshavdlvLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNeesktaessgvdfdSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLqgshdemdnkngtsfanhetevtmeelrdgerlrepgdgrllaDKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDFSVKENSsdanqeglddAKMEEQIhgeadsetdrptlvpcvSGKYYFLKSLFYQY
Low Complexity Region (SEG)
MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQLDDMAESFTAstkvsktvktINFASVIDSIPSHSFRVNDLIYGTQAVSHSRDSGKSNLFVAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETERDDQNTKHGISSHAVDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNEESKTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLREPGDGRLLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDFSVKENSSDANQEGLDDAKMEEQIHGEADSETDRPTLVPCVSGKYYFLKSLFYQY
Disordered region (IsUnstruct)
****AIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRV**************WSGDWLKWDPI*******************TKVSKTVKTINFASVIDSIPSHSFRVNDLIYGTQA******************************************************************************************************************HAVDLVLSKEIVKCPALTGEIELGAACNVDNKL*****************************************KIDI*****ASVALDNVSLTDNVIEREHFRELVDVVSG*******************************************************C**MI**********************************************************************************TLVPCVSGKYYFLKSLFY**
Disordered Region (DISOPRED)
*IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIR**************************************************************************IY*TQAVSHSRDSGKSNL***************************TDQNSL*N*************************************************************************LSKEIVKCPALTGEIELGAACNVD***********************************************************NV***********************************NGTSFANHE***************************************************************************************************************************CVSGKYYFLKSLFYQY
Disordered Region (DISEMBL)
MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIYGTQAVSHSRDSGKSNLFVAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLN****************AFPETIINTEDIESQPTIIEEDDVAEKSF**************GISSHAVDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACH***********VDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLREPGDGRLLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDF***********EGLDDAKMEEQ*********DRPTLVPCVSGKYYFLKSLFYQY
Disordered Region (DISPRO)
MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPIS**********************************************VKTINFASVIDSIPSHSFRVNDLIYGTQ********************************RRLDILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETERDDQNTKHGISSHAVDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNEE*******G**F*SQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLRE*GD*RL******IQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDFSVKENSS**NQEGLDDAK**E************PTLVPCVSGKYYFLKSLFYQY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIYGTQAVSHSRDSGKSNLFVAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSSCENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETERDDQNTKHGISSHAVDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNEESKTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLREPGDGRLLADKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSKDFSVKENSSDANQEGLDDAKMEEQIHGEADSETDRPTLVPCVSGKYYFLKSLFYQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	572	2.2.26 [Sep-21-2011]
Q3SZ21	268	Ribonuclease P protein su	yes	no	0.169	0.361	0.551	7e-19
P78346	268	Ribonuclease P protein su	yes	no	0.169	0.361	0.530	3e-18
O88796	268	Ribonuclease P protein su	yes	no	0.169	0.361	0.520	4e-18
Q3ZE13	366	Ribonuclease P protein su	yes	no	0.166	0.259	0.368	1e-10
P87120	235	Probable ribonuclease P p	yes	no	0.173	0.421	0.313	2e-08
P38786	293	Ribonuclease P/MRP protei	yes	no	0.178	0.348	0.303	5e-05

>sp|Q3SZ21|RPP30_BOVIN Ribonuclease P protein subunit p30 OS=Bos taurus GN=RPP30 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 2   IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
           I  AI+RGV FEL YS  I D  +RR  ISNA  L+   +GKN+I+SS A    E+RGPY
Sbjct: 142 INVAIDRGVGFELLYSPAIKDSTMRRYTISNALNLMQVCKGKNVIISSAAERPLEIRGPY 201

Query: 62  DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHF 98
           DVANL  L G+S   AKAAVS NCRA L+    RK  F
Sbjct: 202 DVANLGLLFGLSESDAKAAVSTNCRAVLLHGETRKTAF 239

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: 5

>sp|P78346|RPP30_HUMAN Ribonuclease P protein subunit p30 OS=Homo sapiens GN=RPP30 PE=1 SV=1

 Score = 94.0 bits (232), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 63/98 (64%), Gaps = 1/98 (1%)

Query: 2   IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
           I  AI+RG+ FEL YS  I D  +RR  IS+A  L+   +GKN+I+SS A    E+RGPY
Sbjct: 142 INVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVIISSAAERPLEIRGPY 201

Query: 62  DVANLSSLLGISMERAKAAVSKNCR-ALISNALRKKHF 98
           DVANL  L G+S   AKAAVS NCR AL+    RK  F
Sbjct: 202 DVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAF 239

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|O88796|RPP30_MOUSE Ribonuclease P protein subunit p30 OS=Mus musculus GN=Rpp30 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 61/98 (62%), Gaps = 1/98 (1%)

Query: 2   IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
           +  AIERG+ FEL Y   I D  +RR  ISNA  L+   +GKN+ILSS A    E+RGPY
Sbjct: 142 VNVAIERGLGFELVYGPAIRDATMRRYTISNALNLMQICKGKNVILSSAAERPLEIRGPY 201

Query: 62  DVANLSSLLGISMERAKAAVSKNCRALISNA-LRKKHF 98
           DVANL  L G+S    KAAVS NCRA+  +   RK  F
Sbjct: 202 DVANLGLLFGLSENDGKAAVSTNCRAVFLHGETRKTAF 239

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q3ZE13|RPP30_DICDI Ribonuclease P protein subunit drpp30 OS=Dictyostelium discoideum GN=drpp30 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%)

Query: 2   IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
           ++  I +G++ E+ Y +L      R      A  LV  + GKN+ILSS   S T LR PY
Sbjct: 146 VRQCIAKGIFIEILYGNLFGIDADRIAFFQIASSLVRSSFGKNIILSSSGKSSTTLRSPY 205

Query: 62  DVANLSSLLGISMERAKAAVSKNCRALISNALRKK 96
           D++NL  L G++ ++AKAAVSK+    + +A+ ++
Sbjct: 206 DLSNLGHLFGLTFDQAKAAVSKHPHTAVLHAITRR 240

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|P87120|RNP3_SCHPO Probable ribonuclease P protein subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A12.04c PE=3 SV=2

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 61/99 (61%)

Query: 5   AIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVA 64
           A+ R +  E++YS  + DV  RR +I+NA  LV  TRG+ +I++S   +  E R  +DV 
Sbjct: 133 AVSRDIGIEISYSSGLRDVSNRRNLITNATSLVRATRGRGIIVTSETRTPLECRAGFDVI 192

Query: 65  NLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETI 103
           NL++   +  ++A+ +V ++CR+++ +A  ++  +R  +
Sbjct: 193 NLATFWDLKQDQARKSVGESCRSVLLHAETRRDTYRSIL 231

Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|P38786|RPP1_YEAST Ribonuclease P/MRP protein subunit RPP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPP1 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 53/102 (51%)

Query: 2   IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
           I + + RGV  E+ Y   + DVQ RRQ +SN + ++  +R + +++ SGA S  E R   
Sbjct: 146 ICSCVNRGVKLEIVYGYALRDVQARRQFVSNVRSVIRSSRSRGIVIGSGAMSPLECRNIL 205

Query: 62  DVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETI 103
            V +L   LG+  +R   A+      ++ N   +   H++TI
Sbjct: 206 GVTSLIKNLGLPSDRCSKAMGDLASLVLLNGRLRNKSHKQTI 247

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP, which cleaves pre-rRNA sequences.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	572
359478668	694	PREDICTED: uncharacterized protein LOC10	0.753	0.621	0.489	1e-101
297746159	667	unnamed protein product [Vitis vinifera]	0.753	0.646	0.489	1e-101
255584138	666	protein with unknown function [Ricinus c	0.823	0.707	0.403	4e-83
224106561	324	predicted protein [Populus trichocarpa]	0.298	0.527	0.701	3e-66
449461019	605	PREDICTED: uncharacterized protein LOC10	0.736	0.695	0.381	1e-64
449529656	513	PREDICTED: uncharacterized LOC101218953	0.536	0.598	0.479	2e-64
297793553	680	hypothetical protein ARALYDRAFT_332265 [	0.326	0.275	0.603	3e-64
9757919	680	unnamed protein product [Arabidopsis tha	0.391	0.329	0.524	3e-63
238481602	705	ribonuclease P subunit Rpp30 [Arabidopsi	0.391	0.317	0.524	3e-63
30697320	581	ribonuclease P subunit Rpp30 [Arabidopsi	0.391	0.385	0.524	6e-63

>gi|359478668|ref|XP_002281631.2| PREDICTED: uncharacterized protein LOC100241609 [Vitis vinifera]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/441 (48%), Positives = 290/441 (65%), Gaps = 10/441 (2%)

Query: 1   MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP 60
           M+KAAI+RGVYFE+TYS+LI DVQ R+Q+ISNAKLLVDWTRG NLI SS A SV ELRGP
Sbjct: 159 MVKAAIKRGVYFEITYSNLISDVQSRKQVISNAKLLVDWTRGNNLIFSSAAPSVNELRGP 218

Query: 61  YDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPW 120
           YDVANLSSLLG+SMERAKAA+SKNCR+LI+NALRKK F++E IRVE I S E FDS EPW
Sbjct: 219 YDVANLSSLLGLSMERAKAAISKNCRSLIANALRKKQFYKEAIRVELIPSSE-FDSNEPW 277

Query: 121 SGDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIY 180
           SG+ LKWDPISSGEGDL LDDMA+SF+A+ KVSKTVK I+FAS++D++P H  ++ DL+ 
Sbjct: 278 SGNGLKWDPISSGEGDLLLDDMAKSFSAAGKVSKTVKAIDFASIVDNMPPHGLQLKDLLS 337

Query: 181 GTQAVSHSRDSGKSNLFVAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSS 240
           GT++V    D+ K+++ V G     V +NG SE    L +  ET+Q S +N P   Q S 
Sbjct: 338 GTKSVLQPVDNIKNSMSVDGKIGAPVPTNGGSEQPDMLKLFPETEQTSSYNTPSKCQISG 397

Query: 241 CENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKS---FTAKETERDDQNTKHGIS 297
            E++++S SP+   +  I++E+I++  TI EE+         F+   TE D+  ++   +
Sbjct: 398 HEDSKKSFSPNDTSKADIDSEEIKTHTTITEEEPNISNGLVDFSPVRTEIDNLQSEECTA 457

Query: 298 SHAVDLVLSKEIVKCPALTGEIELGAACN--VDNKLEGDTLPDTFHSSACHNEESKTAES 355
               ++VL  + +    +  +IE  A CN   D K E  T     + S   NEES+ A+ 
Sbjct: 458 GSEANVVLPDDNLTLCTVLMDIECDAVCNADADGKFEVPTQTRDVNLSVLQNEESRNAKG 517

Query: 356 SGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVD---VVSGQN 412
             V   +++V + EV +  D+K+    S+A +NV L DN  ERE FRE VD   ++S   
Sbjct: 518 FDVVLGARSVTVDEVLVDTDMKNEASLSLASNNVLLHDNSSERE-FREPVDDSVLLSDGT 576

Query: 413 LLQGSHDEMDNKNGTSFANHE 433
                +DE+   N +S ANHE
Sbjct: 577 PSVECYDELKGSNDSSVANHE 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746159|emb|CBI16215.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/441 (48%), Positives = 290/441 (65%), Gaps = 10/441 (2%)

Query: 1   MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP 60
           M+KAAI+RGVYFE+TYS+LI DVQ R+Q+ISNAKLLVDWTRG NLI SS A SV ELRGP
Sbjct: 159 MVKAAIKRGVYFEITYSNLISDVQSRKQVISNAKLLVDWTRGNNLIFSSAAPSVNELRGP 218

Query: 61  YDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPW 120
           YDVANLSSLLG+SMERAKAA+SKNCR+LI+NALRKK F++E IRVE I S E FDS EPW
Sbjct: 219 YDVANLSSLLGLSMERAKAAISKNCRSLIANALRKKQFYKEAIRVELIPSSE-FDSNEPW 277

Query: 121 SGDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIY 180
           SG+ LKWDPISSGEGDL LDDMA+SF+A+ KVSKTVK I+FAS++D++P H  ++ DL+ 
Sbjct: 278 SGNGLKWDPISSGEGDLLLDDMAKSFSAAGKVSKTVKAIDFASIVDNMPPHGLQLKDLLS 337

Query: 181 GTQAVSHSRDSGKSNLFVAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSS 240
           GT++V    D+ K+++ V G     V +NG SE    L +  ET+Q S +N P   Q S 
Sbjct: 338 GTKSVLQPVDNIKNSMSVDGKIGAPVPTNGGSEQPDMLKLFPETEQTSSYNTPSKCQISG 397

Query: 241 CENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKS---FTAKETERDDQNTKHGIS 297
            E++++S SP+   +  I++E+I++  TI EE+         F+   TE D+  ++   +
Sbjct: 398 HEDSKKSFSPNDTSKADIDSEEIKTHTTITEEEPNISNGLVDFSPVRTEIDNLQSEECTA 457

Query: 298 SHAVDLVLSKEIVKCPALTGEIELGAACN--VDNKLEGDTLPDTFHSSACHNEESKTAES 355
               ++VL  + +    +  +IE  A CN   D K E  T     + S   NEES+ A+ 
Sbjct: 458 GSEANVVLPDDNLTLCTVLMDIECDAVCNADADGKFEVPTQTRDVNLSVLQNEESRNAKG 517

Query: 356 SGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVD---VVSGQN 412
             V   +++V + EV +  D+K+    S+A +NV L DN  ERE FRE VD   ++S   
Sbjct: 518 FDVVLGARSVTVDEVLVDTDMKNEASLSLASNNVLLHDNSSERE-FREPVDDSVLLSDGT 576

Query: 413 LLQGSHDEMDNKNGTSFANHE 433
                +DE+   N +S ANHE
Sbjct: 577 PSVECYDELKGSNDSSVANHE 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584138|ref|XP_002532809.1| protein with unknown function [Ricinus communis] gi|223527429|gb|EEF29566.1| protein with unknown function [Ricinus communis]

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 235/583 (40%), Positives = 306/583 (52%), Gaps = 112/583 (19%)

Query: 1   MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP 60
           M+KAA+ERGV+FE+TYSDLI+DVQ+RRQMISNAKLLVDWTRG+NLI+SS A SV ELRGP
Sbjct: 130 MVKAAMERGVHFEITYSDLIVDVQVRRQMISNAKLLVDWTRGRNLIISSAAPSVNELRGP 189

Query: 61  YDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPW 120
           YDVANLSSLLG+SMERAK A+SKNCR L++NALRKKHF++ETIRVEPIS  E+ DSKEP 
Sbjct: 190 YDVANLSSLLGLSMERAKEAISKNCRNLVANALRKKHFYKETIRVEPISLDEKSDSKEPL 249

Query: 121 SGDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIY 180
           S DWLKWDPISSGE DLQL+D+A+SF+A+ KVS +VK I+FASVIDSI SH         
Sbjct: 250 SIDWLKWDPISSGEWDLQLEDIAKSFSATNKVSNSVKAIDFASVIDSISSH--------- 300

Query: 181 GTQAVSHSRDSGKSNLFVAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSS 240
                      G + L  A A E  V + G SE     D+L  TD  S+ N  L  Q+  
Sbjct: 301 -----------GANFLTPAKAVEVPVTATGASEKLGGHDLLPVTDCKSMCNFLLKGQT-- 347

Query: 241 CENNRESGSPSAFPE----TIINTEDIESQPTIIEE----DDVAEKSFTAKETERDDQNT 292
                + GS  A P     T  ++E+I +     +E     +V++       +++ D   
Sbjct: 348 ----LDHGSSQAMPRDAATTSTSSEEIRAPTNATKEKPKNSNVSDAVLPLVVSQKHDLQL 403

Query: 293 KHGISSHAVDLVLSKE--IVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNEES 350
           +  I+S  ++ VL+ E  I++ PA   E  L  AC        DT  D    S    E  
Sbjct: 404 QDLINSD-LNTVLANEDAILQTPA--AENGLTDAC------VADTTTDILSESTNFLESQ 454

Query: 351 --KTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIEREHFRELVDVV 408
             K+  S  V   +QN  M     K   +D+EDA         T+N   R+  RE  D  
Sbjct: 455 ILKSMNSHAV-LGTQNAVMENNIEKTGTEDQEDAHG-------TENASGRKQLREFRDAA 506

Query: 409 SGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLREPGDGRLLADKISIQESCTE 468
                       + + +   F           L  GE                       
Sbjct: 507 ------------ITHVDSVPFV----------LTSGE----------------------- 521

Query: 469 MIVKDD--SSVANHEACEEVMVEKQKNGVQFREPGERLITGQN--------LFLDSSKDF 518
             V D+  S V N E  EEV +E+Q++G    +  E +   ++        + L    DF
Sbjct: 522 --VNDNVVSLVKNQEILEEVAMEEQEHGDTNLDISEEVAKEEHEHEDADTEMALSRDNDF 579

Query: 519 SVKENSSDANQEGLDDAKMEEQIHGEADSETDRPTLVPCVSGK 561
            VK NS  A    L D +M+ Q H EAD+E++  T VP +SGK
Sbjct: 580 EVKGNSLGAEVVPLKDVEMQGQKHEEADTESNHQTFVPSISGK 622

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106561|ref|XP_002314208.1| predicted protein [Populus trichocarpa] gi|222850616|gb|EEE88163.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/171 (70%), Positives = 146/171 (85%)

Query: 1   MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP 60
           M+KAAIERGVYFE+TYSDLI D+Q+RRQMI NAKLLVDWTRGKNLI +S ASSV + RGP
Sbjct: 153 MVKAAIERGVYFEITYSDLIADIQVRRQMIPNAKLLVDWTRGKNLIFTSAASSVNDFRGP 212

Query: 61  YDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPW 120
           YDVAN SSL G+SMERAK A+SKNCR+LI+NALRKKHF++E IR+EPISS E  D+KE  
Sbjct: 213 YDVANFSSLFGLSMERAKTAISKNCRSLIANALRKKHFYKEAIRIEPISSDEISDTKELI 272

Query: 121 SGDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSH 171
           S +WLKWDPISSG GDLQL D+ +SF+A+T+VS T K I+F+ V++ + S+
Sbjct: 273 SVNWLKWDPISSGGGDLQLGDIEKSFSATTRVSTTAKAIDFSEVLNGMASN 323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461019|ref|XP_004148241.1| PREDICTED: uncharacterized protein LOC101218953 [Cucumis sativus]

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 189/496 (38%), Positives = 272/496 (54%), Gaps = 75/496 (15%)

Query: 2   IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
           I +AI+ GVYFE+ YSDL+ DV  RRQMIS AK+LVDWT GKNLILSS A SV E+RGPY
Sbjct: 159 IISAIKFGVYFEIMYSDLLSDVHERRQMISTAKVLVDWTNGKNLILSSAAPSVNEIRGPY 218

Query: 62  DVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWS 121
           DVANLSSLLG+SME AKAAVSKNCR LI+NAL++K F++ETIRVE ISS ++ D  +PWS
Sbjct: 219 DVANLSSLLGVSMECAKAAVSKNCRNLIANALKRKQFYKETIRVERISSDDKLDLDDPWS 278

Query: 122 GDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIYG 181
            D LKWDP+SSGEGDL LDD+A+SF AS + SK VK+I+F S++D++PS  F V ++I  
Sbjct: 279 VDLLKWDPMSSGEGDLLLDDIAKSFAASNERSKNVKSIDFTSIVDNLPSQGFLVKNVIEC 338

Query: 182 TQAVSHSRDSGKSNLF-VAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSS 240
            +A     D  K +L+ V  A E  +A NGV +    L   H    + L +   +++ S 
Sbjct: 339 PEAKLSLND--KQDLWPVTDAIEPQIAVNGVIQQSHTLAEEHRPLSDRLSSIIESSKISH 396

Query: 241 CENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETERDDQNTKHGISSHA 300
              N E    ++  E   NT +   QP I+++++  EK       + D+  +K+   +  
Sbjct: 397 SHGNAEEVPSNSEEEK--NTINEIVQPEILKQEEPIEK-------DVDNLQSKNLTLTSE 447

Query: 301 VDLVLSKEIVKCPALTGEIELGAACNVDNKLEGDTLPDTFHSSACHNEESKTAESSGVDF 360
           +++V + E+V  P  T  +                      +    N+ ++T +   VDF
Sbjct: 448 LNVVSTNELVHSPTSTKNLS---------------------TVVFENDRTETLKMENVDF 486

Query: 361 DSQNVAMGEVGMKIDIKDREDASVALDNVSLTD--NVIEREHFRELVDVVSGQNLLQGSH 418
             QN    E G++             ++V+L+D  NV   ++   L+             
Sbjct: 487 -HQN----EYGLE-------------NSVTLSDSENVCREKNSSNLI------------- 515

Query: 419 DEMDNKNGTSFANHETEVTMEELRDGERLREPGDGRLLADKISIQESCTEMIVKDDSSVA 478
              D K+ T     +  +  EE     RL EP D  +  D++S  +SCT    KDD    
Sbjct: 516 -SEDQKHATMVV--DGTLAAEECLHSARLGEPADVAIAEDQVSPLDSCTND-TKDD---- 567

Query: 479 NHEACEEVMVEKQKNG 494
            ++   EV ++ Q++G
Sbjct: 568 -YQQTSEVFMDDQESG 582

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529656|ref|XP_004171814.1| PREDICTED: uncharacterized LOC101218953 [Cucumis sativus]

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 153/319 (47%), Positives = 209/319 (65%), Gaps = 12/319 (3%)

Query: 2   IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
           I +AI+RGVYFE+ YSDL+ DV  RRQMIS AK+LVDWT GKNLILSS A SV E+RGPY
Sbjct: 159 IISAIKRGVYFEIMYSDLLSDVHERRQMISTAKVLVDWTNGKNLILSSAAPSVNEIRGPY 218

Query: 62  DVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWS 121
           DVANLSSLLG+SME AKAAVSKNCR LI+NAL++K F++ETIRVE ISS ++ D  +PWS
Sbjct: 219 DVANLSSLLGVSMECAKAAVSKNCRNLIANALKRKQFYKETIRVERISSDDKLDLDDPWS 278

Query: 122 GDWLKWDPISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIYG 181
            D LKWDP+SSGEGDL LDD+A+SF AS + SK VK+I+F S++D++PS  F V ++I  
Sbjct: 279 VDLLKWDPMSSGEGDLLLDDIAKSFAASNERSKNVKSIDFTSIVDNLPSQGFLVKNVIEC 338

Query: 182 TQAVSHSRDSGKSNLF-VAGANEKSVASNGVSENRRRLDILHETDQNSLHNAPLNNQSSS 240
            +A     D  K +L+ V  A E  +A NGV +    L   H    + L +   +++ S 
Sbjct: 339 PEAKLSLND--KQDLWPVTDAIEPQIAVNGVIQQSHTLAEEHRPLSDRLSSIIESSKISH 396

Query: 241 CENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETERDDQNTKHGISSHA 300
              N E    ++  E   NT +   QP I+++++  EK       + D+  +K+   +  
Sbjct: 397 SHGNAEEVPSNSEEEK--NTINEIVQPEILKQEEPIEK-------DVDNLQSKNLTLTSE 447

Query: 301 VDLVLSKEIVKCPALTGEI 319
           +++V + E+V  P  T  +
Sbjct: 448 LNVVSTNELVHSPTSTKNL 466

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793553|ref|XP_002864661.1| hypothetical protein ARALYDRAFT_332265 [Arabidopsis lyrata subsp. lyrata] gi|297310496|gb|EFH40920.1| hypothetical protein ARALYDRAFT_332265 [Arabidopsis lyrata subsp. lyrata]

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 114/189 (60%), Positives = 153/189 (80%), Gaps = 2/189 (1%)

Query: 1   MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP 60
           M+KAAI+RG+YFE+ YSDL++D Q RRQ+ISNAKLLVDWTRGKNLI+SSGA SVTELRGP
Sbjct: 165 MVKAAIQRGIYFEIKYSDLLMDAQTRRQVISNAKLLVDWTRGKNLIISSGAPSVTELRGP 224

Query: 61  YDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPW 120
            D+ NL  LLG+S +RA+AA+SKNCR +I+  L+KK FH+E +RVE +SSG+ F   +P 
Sbjct: 225 NDIINLMCLLGLSSQRARAAISKNCRNMIAKVLKKKRFHKEAVRVELLSSGDTFSLGQPL 284

Query: 121 SGDWLKWDPISSGEGDLQLDDMAESFTASTKVS-KTVKTINFASVIDSIPSHSFRVNDLI 179
           S D +KWDP+SSGEGD+ LDD+A++F A+  V+ K+ K I+F SV+D +P+H FRV D++
Sbjct: 285 SEDCMKWDPLSSGEGDMLLDDLAKAFDATNAVAHKSSKAIDFTSVLDGLPTHGFRVKDIV 344

Query: 180 YGTQAVSHS 188
            GT+ ++ S
Sbjct: 345 -GTEPLTQS 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9757919|dbj|BAB08366.1| unnamed protein product [Arabidopsis thaliana]

 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 170/229 (74%), Gaps = 5/229 (2%)

Query: 1   MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP 60
           M+KAAI+RG+YFE+ YSD+++D Q RRQ+ISNAKLLVDWTRGKNLI+SSGA SVTELRGP
Sbjct: 165 MVKAAIQRGIYFEIKYSDILMDAQTRRQVISNAKLLVDWTRGKNLIISSGAPSVTELRGP 224

Query: 61  YDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPW 120
            DV NL  LLG+S ERA+AA+SKNCR +I+  L+KK FH+E +RVE +S+G+ F  ++P 
Sbjct: 225 NDVINLMFLLGLSAERARAAISKNCRNMIAKVLKKKRFHKEAVRVELLSAGDTFSLEQPL 284

Query: 121 SGDWLKWDPISSGEGDLQLDDMAESFTASTKVS-KTVKTINFASVIDSIPSHSFRVNDLI 179
           S D +KWD +SSGEGD+ LDD+A++F A+  V+ K+ K I+F SV+D +P H FRV D++
Sbjct: 285 SEDCMKWDRLSSGEGDMLLDDLAKAFDATNVVAHKSSKAIDFTSVLDGLPKHGFRVKDIV 344

Query: 180 YGTQAVSHSRDSGKSNLFVAGANEKS---VASNGVSENRRRLDILHETD 225
            GT++V+    +   +  V  +N+ S   +A+    +N R ++ + + D
Sbjct: 345 -GTESVTQPSAAKVIDTQVHSSNQVSELRMATASSDDNLREIETISQID 392

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481602|ref|NP_001154789.1| ribonuclease P subunit Rpp30 [Arabidopsis thaliana] gi|332009879|gb|AED97262.1| ribonuclease P subunit Rpp30 [Arabidopsis thaliana]

 Score =  249 bits (635), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 170/229 (74%), Gaps = 5/229 (2%)

Query: 1   MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP 60
           M+KAAI+RG+YFE+ YSD+++D Q RRQ+ISNAKLLVDWTRGKNLI+SSGA SVTELRGP
Sbjct: 165 MVKAAIQRGIYFEIKYSDILMDAQTRRQVISNAKLLVDWTRGKNLIISSGAPSVTELRGP 224

Query: 61  YDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPW 120
            DV NL  LLG+S ERA+AA+SKNCR +I+  L+KK FH+E +RVE +S+G+ F  ++P 
Sbjct: 225 NDVINLMFLLGLSAERARAAISKNCRNMIAKVLKKKRFHKEAVRVELLSAGDTFSLEQPL 284

Query: 121 SGDWLKWDPISSGEGDLQLDDMAESFTASTKVS-KTVKTINFASVIDSIPSHSFRVNDLI 179
           S D +KWD +SSGEGD+ LDD+A++F A+  V+ K+ K I+F SV+D +P H FRV D++
Sbjct: 285 SEDCMKWDRLSSGEGDMLLDDLAKAFDATNVVAHKSSKAIDFTSVLDGLPKHGFRVKDIV 344

Query: 180 YGTQAVSHSRDSGKSNLFVAGANEKS---VASNGVSENRRRLDILHETD 225
            GT++V+    +   +  V  +N+ S   +A+    +N R ++ + + D
Sbjct: 345 -GTESVTQPSAAKVIDTQVHSSNQVSELRMATASSDDNLREIETISQID 392

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30697320|ref|NP_200806.2| ribonuclease P subunit Rpp30 [Arabidopsis thaliana] gi|332009878|gb|AED97261.1| ribonuclease P subunit Rpp30 [Arabidopsis thaliana]

 Score =  248 bits (633), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 170/229 (74%), Gaps = 5/229 (2%)

Query: 1   MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP 60
           M+KAAI+RG+YFE+ YSD+++D Q RRQ+ISNAKLLVDWTRGKNLI+SSGA SVTELRGP
Sbjct: 165 MVKAAIQRGIYFEIKYSDILMDAQTRRQVISNAKLLVDWTRGKNLIISSGAPSVTELRGP 224

Query: 61  YDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPW 120
            DV NL  LLG+S ERA+AA+SKNCR +I+  L+KK FH+E +RVE +S+G+ F  ++P 
Sbjct: 225 NDVINLMFLLGLSAERARAAISKNCRNMIAKVLKKKRFHKEAVRVELLSAGDTFSLEQPL 284

Query: 121 SGDWLKWDPISSGEGDLQLDDMAESFTASTKVS-KTVKTINFASVIDSIPSHSFRVNDLI 179
           S D +KWD +SSGEGD+ LDD+A++F A+  V+ K+ K I+F SV+D +P H FRV D++
Sbjct: 285 SEDCMKWDRLSSGEGDMLLDDLAKAFDATNVVAHKSSKAIDFTSVLDGLPKHGFRVKDIV 344

Query: 180 YGTQAVSHSRDSGKSNLFVAGANEKS---VASNGVSENRRRLDILHETD 225
            GT++V+    +   +  V  +N+ S   +A+    +N R ++ + + D
Sbjct: 345 -GTESVTQPSAAKVIDTQVHSSNQVSELRMATASSDDNLREIETISQID 392

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	572
TAIR|locus:2168068	705	GAF1 "AT5G59980" [Arabidopsis	0.391	0.317	0.510	2.3e-62
UNIPROTKB|E1BZ65	267	RPP30 "Uncharacterized protein	0.166	0.355	0.526	4.1e-19
UNIPROTKB|F1SCX5	268	RPP30 "Uncharacterized protein	0.204	0.436	0.504	5.3e-19
UNIPROTKB|Q3SZ21	268	RPP30 "Ribonuclease P protein	0.201	0.429	0.5	8.6e-19
UNIPROTKB|J9NSV8	268	RPP30 "Uncharacterized protein	0.169	0.361	0.540	8.6e-19
UNIPROTKB|F1MDQ8	268	RPP30 "Ribonuclease P protein	0.201	0.429	0.491	1.8e-18
RGD|1595116	268	Rpp30 "ribonuclease P/MRP subu	0.201	0.429	0.482	2.3e-18
UNIPROTKB|P78346	268	RPP30 "Ribonuclease P protein	0.195	0.417	0.482	3e-18
MGI|MGI:1859683	268	Rpp30 "ribonuclease P/MRP 30 s	0.169	0.361	0.520	6.3e-18
UNIPROTKB|Q5VU11	254	RPP30 "Ribonuclease P protein	0.153	0.346	0.545	2.2e-17

TAIR|locus:2168068 GAF1 "AT5G59980" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
 Identities = 117/229 (51%), Positives = 164/229 (71%)

Query:     1 MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGP 60
             M+KAAI+RG+YFE+ YSD+++D Q RRQ+ISNAKLLVDWTRGKNLI+SSGA SVTELRGP
Sbjct:   165 MVKAAIQRGIYFEIKYSDILMDAQTRRQVISNAKLLVDWTRGKNLIISSGAPSVTELRGP 224

Query:    61 YDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPW 120
              DV NL  LLG+S ERA+AA+SKNCR +I+  L+KK FH+E +RVE +S+G+ F  ++P 
Sbjct:   225 NDVINLMFLLGLSAERARAAISKNCRNMIAKVLKKKRFHKEAVRVELLSAGDTFSLEQPL 284

Query:   121 SGDWLKWDPISSGEGDLQLDDMAESFTAXXXXXXXXX-XINFASVIDSIPSHSFRVNDLI 179
             S D +KWD +SSGEGD+ LDD+A++F A           I+F SV+D +P H FRV D++
Sbjct:   285 SEDCMKWDRLSSGEGDMLLDDLAKAFDATNVVAHKSSKAIDFTSVLDGLPKHGFRVKDIV 344

Query:   180 YGTQAVSHSRDSGKSNLFVAGANEKS---VASNGVSENRRRLDILHETD 225
              GT++V+    +   +  V  +N+ S   +A+    +N R ++ + + D
Sbjct:   345 -GTESVTQPSAAKVIDTQVHSSNQVSELRMATASSDDNLREIETISQID 392

GO:0000213 "tRNA-intron endonuclease activity" evidence=ISS

GO:0003824 "catalytic activity" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008033 "tRNA processing" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0009553 "embryo sac development" evidence=IMP

GO:0048868 "pollen tube development" evidence=IMP

GO:0008295 "spermidine biosynthetic process" evidence=RCA

UNIPROTKB|E1BZ65 RPP30 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 237 (88.5 bits), Expect = 4.1e-19, P = 4.1e-19
 Identities = 50/95 (52%), Positives = 63/95 (66%)

Query:     2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
             +  AI+RG+YFEL Y+  I D  +RR  ISNA  L+   +GKN+++SS A    ELRGPY
Sbjct:   142 VNMAIDRGIYFELLYTPAIKDSTMRRYTISNAISLMQICKGKNIVISSAAERPLELRGPY 201

Query:    62 DVANLSSLLGISMERAKAAVSKNCRALISNALRKK 96
             DVANL  L G+S   AKAAVS NCRA I +   +K
Sbjct:   202 DVANLGLLFGLSEGEAKAAVSTNCRATILHGETRK 236

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

UNIPROTKB|F1SCX5 RPP30 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 236 (88.1 bits), Expect = 5.3e-19, P = 5.3e-19
 Identities = 60/119 (50%), Positives = 71/119 (59%)

Query:     2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
             I  AI+RGV FEL YS  I D  +RR  ISNA  L+   +GKN+I+SS A    E+RGPY
Sbjct:   142 INVAIDRGVAFELVYSPAIKDSTMRRYTISNALNLMQICKGKNVIVSSAAERPLEIRGPY 201

Query:    62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRVEPISSGEQFDSKEP 119
             DVANL  L G+S   AKAAVS NCRA L+    RK  F   +   +P SS E  D   P
Sbjct:   202 DVANLGLLFGLSESDAKAAVSTNCRAVLLHGETRKTAFGIISTVKKPRSS-ETDDESLP 259

GO:0008033 "tRNA processing" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

UNIPROTKB|Q3SZ21 RPP30 "Ribonuclease P protein subunit p30" [Bos taurus (taxid:9913)]

 Score = 234 (87.4 bits), Expect = 8.6e-19, P = 8.6e-19
 Identities = 58/116 (50%), Positives = 70/116 (60%)

Query:     2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
             I  AI+RGV FEL YS  I D  +RR  ISNA  L+   +GKN+I+SS A    E+RGPY
Sbjct:   142 INVAIDRGVGFELLYSPAIKDSTMRRYTISNALNLMQVCKGKNVIISSAAERPLEIRGPY 201

Query:    62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRVEPISSGEQFDS 116
             DVANL  L G+S   AKAAVS NCRA L+    RK  F   +   +P +S    DS
Sbjct:   202 DVANLGLLFGLSESDAKAAVSTNCRAVLLHGETRKTAFGIISTVKKPRTSEADDDS 257

GO:0005730 "nucleolus" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

UNIPROTKB|J9NSV8 RPP30 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 234 (87.4 bits), Expect = 8.6e-19, P = 8.6e-19
 Identities = 53/98 (54%), Positives = 63/98 (64%)

Query:     2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
             I  A++RGV FEL YS  I D  +RR  ISNA  L+   +GKN+I+SS A    E+RGPY
Sbjct:   142 INVAVDRGVCFELVYSPAIKDSTMRRYTISNALNLMQVCKGKNVIISSAAERPLEIRGPY 201

Query:    62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHF 98
             DVANL  L G+S   AKAAVS NCRA L+    RK  F
Sbjct:   202 DVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAF 239

GO:0008033 "tRNA processing" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

UNIPROTKB|F1MDQ8 RPP30 "Ribonuclease P protein subunit p30" [Bos taurus (taxid:9913)]

 Score = 231 (86.4 bits), Expect = 1.8e-18, P = 1.8e-18
 Identities = 57/116 (49%), Positives = 70/116 (60%)

Query:     2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
             I  AI+RGV FEL YS  I D  +RR  ISNA  L+   +GKN+I+SS A    E+RGPY
Sbjct:   142 INVAIDRGVGFELLYSPAIKDSTMRRYTISNALNLMQVCKGKNVIISSAAERPLEIRGPY 201

Query:    62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRVEPISSGEQFDS 116
             DVANL  L G+S   AKAA+S NCRA L+    RK  F   +   +P +S    DS
Sbjct:   202 DVANLGLLFGLSESDAKAALSTNCRAVLLHGETRKTAFGIISTVKKPRTSEADDDS 257

GO:0008033 "tRNA processing" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

RGD|1595116 Rpp30 "ribonuclease P/MRP subunit" [Rattus norvegicus (taxid:10116)]

 Score = 230 (86.0 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 56/116 (48%), Positives = 68/116 (58%)

Query:     2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
             I  AIERG+ FEL Y   I D  +RR  ISNA  L+   +GKN+ILSS A    E+RGPY
Sbjct:   142 INVAIERGLGFELVYGPAIRDATMRRYTISNALNLMQICKGKNVILSSAAERPLEIRGPY 201

Query:    62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHRETIRVEPISSGEQFDS 116
             DVANL  L G+S    KAAVS NCRA  +    RK  F   +   +P SS  + +S
Sbjct:   202 DVANLGLLFGLSENEGKAAVSTNCRAAFLHGETRKTAFGIISTVKKPRSSEAEDES 257

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

UNIPROTKB|P78346 RPP30 "Ribonuclease P protein subunit p30" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 3.0e-18, P = 3.0e-18
 Identities = 55/114 (48%), Positives = 70/114 (61%)

Query:     2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
             I  AI+RG+ FEL YS  I D  +RR  IS+A  L+   +GKN+I+SS A    E+RGPY
Sbjct:   142 INVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVIISSAAERPLEIRGPY 201

Query:    62 DVANLSSLLGISMERAKAAVSKNCRA-LISNALRKKHFHR-ETIRVEPISSGEQ 113
             DVANL  L G+S   AKAAVS NCRA L+    RK  F    T++    S G++
Sbjct:   202 DVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFGIISTVKKPRPSEGDE 255

GO:0008033 "tRNA processing" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0005655 "nucleolar ribonuclease P complex" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

MGI|MGI:1859683 Rpp30 "ribonuclease P/MRP 30 subunit" [Mus musculus (taxid:10090)]

 Score = 226 (84.6 bits), Expect = 6.3e-18, P = 6.3e-18
 Identities = 51/98 (52%), Positives = 61/98 (62%)

Query:     2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
             +  AIERG+ FEL Y   I D  +RR  ISNA  L+   +GKN+ILSS A    E+RGPY
Sbjct:   142 VNVAIERGLGFELVYGPAIRDATMRRYTISNALNLMQICKGKNVILSSAAERPLEIRGPY 201

Query:    62 DVANLSSLLGISMERAKAAVSKNCRAL-ISNALRKKHF 98
             DVANL  L G+S    KAAVS NCRA+ +    RK  F
Sbjct:   202 DVANLGLLFGLSENDGKAAVSTNCRAVFLHGETRKTAF 239

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0004526 "ribonuclease P activity" evidence=IEA

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q5VU11 RPP30 "Ribonuclease P protein subunit p30" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.2e-17, P = 2.2e-17
 Identities = 48/88 (54%), Positives = 59/88 (67%)

Query:     2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPY 61
             I  AI+RG+ FEL YS  I D  +RR  IS+A  L+   +GKN+I+SS A    E+RGPY
Sbjct:   164 INVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVIISSAAERPLEIRGPY 223

Query:    62 DVANLSSLLGISMERAKAAVSKNCRALI 89
             DVANL  L G+S   AKAAVS NCRA +
Sbjct:   224 DVANLGLLFGLSESDAKAAVSTNCRAAL 251

GO:0004540 "ribonuclease activity" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.26	LOW CONFIDENCE prediction!
3rd Layer	3.1.26.5	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	572
pfam01876	152	pfam01876, RNase_P_p30, RNase P subunit p30	9e-28
COG1603	229	COG1603, RPP1, RNase P/RNase MRP subunit p30 [Tran	1e-12
PRK00912	237	PRK00912, PRK00912, ribonuclease P protein compone	2e-05

>gnl|CDD|216757 pfam01876, RNase_P_p30, RNase P subunit p30

 Score =  108 bits (272), Expect = 9e-28
 Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 3/87 (3%)

Query: 1   MIKAAIERGVYFELTYSDLIL-DVQLRRQMISNAKLLVDWTRG--KNLILSSGASSVTEL 57
           + K A+ERGV FE++YS L+  D   RR  ISNA+ L+  +R   + +++SSGA S  EL
Sbjct: 66  LAKLAVERGVAFEISYSPLLRRDGYARRNFISNARKLIRLSRKYDRPIVISSGARSPLEL 125

Query: 58  RGPYDVANLSSLLGISMERAKAAVSKN 84
           R PYDV NL +LLG+  E AK A+S N
Sbjct: 126 RSPYDVINLLALLGLDEEEAKEALSTN 152

This protein is part of the RNase P complex that is involved in tRNA maturation. Length = 152

>gnl|CDD|224519 COG1603, RPP1, RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 7/114 (6%)

Query: 2   IKAAIERGVYFELTYSDLILDVQLRR-QMISNAKLLVDWTR--GKNLILSSGASSVTELR 58
            + A E+GV  E++   L+     RR +++S  + L+   R     ++++S A S  ELR
Sbjct: 119 ARLAAEKGVALEISLRPLLRSSGYRRARLLSFLRSLLRLARKYDVPIVVTSDAESPLELR 178

Query: 59  GPYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGE 112
            P DV +L+ +LG+  + AK ++S+  R ++ N  R +        V  + S  
Sbjct: 179 SPRDVISLAKVLGLEDDEAKKSLSEYPRLILRNRNRIRD----GFIVPGVGSLG 228

Length = 229

>gnl|CDD|234862 PRK00912, PRK00912, ribonuclease P protein component 3; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 3/113 (2%)

Query: 3   KAAIERGVYFELTYSDLILDVQLRR-QMISNAKLLVDWTRGKN--LILSSGASSVTELRG 59
           K A    V  E    D++     RR + +SN +  +   R  +  L+L+SGA S  +LR 
Sbjct: 125 KEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSCYDLRS 184

Query: 60  PYDVANLSSLLGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGE 112
           P ++  L+ L G+  + A  A+S    ++I     +K++  E + +    S  
Sbjct: 185 PREMIALAELFGMEEDEALKALSYYPESIIKKNRNRKNYVIEGVEIVEGESDF 237

Length = 237

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	572
) that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01876">PF01876	150	RNase_P_p30: RNase P subunit p30; InterPro: IPR002	99.89
KOG2363	247	consensus Protein subunit of nuclear ribonuclease	99.81
COG1603	229	RPP1 RNase P/RNase MRP subunit p30 [Translation, r	99.69
PRK00912	237	ribonuclease P protein component 3; Provisional	99.63
PRK03892	216	ribonuclease P protein component 3; Provisional	99.59
PRK06361	212	hypothetical protein; Provisional	97.32
PRK09248	246	putative hydrolase; Validated	94.63
TIGR00010	252	hydrolase, TatD family. Several genomes have multi	93.03
cd00530	293	PTE Phosphotriesterase (PTE) catalyzes the hydroly	90.78
cd01310	251	TatD_DNAse TatD like proteins; E.coli TatD is a cy	89.8
PRK09875	292	putative hydrolase; Provisional	89.66
PRK08392	215	hypothetical protein; Provisional	88.82
PRK07945	335	hypothetical protein; Provisional	87.8
PRK07328	269	histidinol-phosphatase; Provisional	87.16
PRK07329	246	hypothetical protein; Provisional	85.2

>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex (Back    Hide alignment and domain information

Probab=99.89  E-value=8.5e-24  Score=187.37  Aligned_cols=84  Identities=56%  Similarity=0.770  Sum_probs=69.4

Q ss_pred             CHHHHHHcCcEEEEEecccc-CChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHH
Q 008253            1 MIKAAIERGVYFELTYSDLI-LDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA   79 (572)
Q Consensus         1 MVRaAIERGI~FEI~YSPaI-rDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKa   79 (572)
                      ++++|++|||+|||+|+|+| +++..|+++|+|++.|+++++++||||||||+++++||+|+||+||+.+|||++++|++
T Consensus        66 ~~~~a~~~gi~~EI~~~~~l~~~~~~r~~~~~~~~~l~~~~~~~~iiiSSgA~~~~elr~P~dv~~l~~~lGl~~~~a~~  145 (150)
T PF01876_consen   66 QARLAIERGIFFEISYSPLLRSDGSNRRNFISNARRLIRLTKKKNIIISSGASSPLELRSPRDVINLLALLGLSEEEAKK  145 (150)
T ss_dssp             HHHHHHHHT-EEEEESHHHHHS-HHHHHHHHHHHHHHHHHHHH--EEEE---SSGGG---HHHHHHHHHHTT--HHHHHH
T ss_pred             HHHHHHHCCEEEEEEehHhhccCcHHHHHHHHHHHHHHHHhCCCCEEEEcCCCChhhCcCHHHHHHHHHHhCCCHHHHHH
Confidence            47899999999999999999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 008253           80 AVSKN   84 (572)
Q Consensus        80 ALSkN   84 (572)
                      |+++|
T Consensus       146 avs~n  150 (150)
T PF01876_consen  146 AVSTN  150 (150)
T ss_dssp             TTTH-
T ss_pred             HHhcC
Confidence            99986

1.26.5 "/>) that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.

>KOG2363 consensus Protein subunit of nuclear ribonuclease P (RNase P) [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=3.3e-20  Score=181.72  Aligned_cols=103  Identities=46%  Similarity=0.671  Sum_probs=96.7

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHHHH
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKAAV   81 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKaAL   81 (572)
                      +..|+.||++|||.|++.++|+..|++||+||+.|++.++|||||+||||..++++|+|+||+||+..|||+++||+++|
T Consensus       128 ~~~av~r~i~~ei~y~~g~~d~~~r~~~isna~~L~~~~~~~nvv~sSgA~~~~e~r~~~dV~~l~~~lgl~~dq~k~~l  207 (247)
T KOG2363|consen  128 IMTAVKRGIFLEIPYSSGLYDSDDRRMWISNARRLLRITRGKNVVFSSGAMRPTEERGPYDVANLLIILGLSSDQAKAAL  207 (247)
T ss_pred             eeeeecCCceeEeeecccccCCcchhhhhhhHHHHHHhcCCceeEeecccccchhhcChhhhhhhHHHcCCchHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhhhcccccceeEE
Q 008253           82 SKNCRALISNALRKKHFHRETIR  104 (572)
Q Consensus        82 SkNPRsLLl~AlRRRstyK~VI~  104 (572)
                      +.+||+++.++.+|++.++..+.
T Consensus       208 ~~s~r~~~l~a~~R~~~~~s~~~  230 (247)
T KOG2363|consen  208 SESCRLLLLCAETRRSKAASISE  230 (247)
T ss_pred             hhhhhhhhhHHHHhhccceeEee
Confidence            99999999999999874444443

>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=9.8e-17  Score=156.09  Aligned_cols=96  Identities=30%  Similarity=0.464  Sum_probs=90.3

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHH-HHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHH
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRR-QMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAK   78 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRR-n~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAK   78 (572)
                      ++.|.+|||++||.|++++++...|| +++++++.+++++|  +.++||||+|+++++||+|+|+++|+.+|||+.++|+
T Consensus       119 a~laa~~~valeisl~~ll~~~g~~Ra~~l~~lr~~lrl~rk~~v~ivvtS~A~s~~elrsP~dv~sl~~~lG~e~~ea~  198 (229)
T COG1603         119 ARLAAEKGVALEISLRPLLRSSGYRRARLLSFLRSLLRLARKYDVPIVVTSDAESPLELRSPRDVISLAKVLGLEDDEAK  198 (229)
T ss_pred             HHHHHhcCceEEEehHHhhccchhHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCChhhhcChhhHHHHHHHhCCCHHHHH
Confidence            68999999999999999999876666 99999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHhhhhccc
Q 008253           79 AAVSKNCRALISNALRKKH   97 (572)
Q Consensus        79 aALSkNPRsLLl~AlRRRs   97 (572)
                      .+++..|+.++.++.+.+.
T Consensus       199 ~~~~~~p~~iL~~~~~~~~  217 (229)
T COG1603         199 KSLSEYPRLILRNRNRIRD  217 (229)
T ss_pred             HHHHHhHHHHHHHhhhcCC
Confidence            9999999999998666644

>PRK00912 ribonuclease P protein component 3; Provisional

Probab=99.63  E-value=1.7e-15  Score=142.57  Aligned_cols=104  Identities=26%  Similarity=0.369  Sum_probs=95.3

Q ss_pred             HHHHHHcCcEEEEEeccccCCh-hHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHH
Q 008253            2 IKAAIERGVYFELTYSDLILDV-QLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAK   78 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs-~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAK   78 (572)
                      +++|+++|++|||+|++++++. ..|+++++|++.++++++  |.+|||||+|.++.+||+|+++++|+..+||+.++++
T Consensus       124 ~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~~~l~~~~~~~~l~~~~Gl~~~~~~  203 (237)
T PRK00912        124 AKEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSCYDLRSPREMIALAELFGMEEDEAL  203 (237)
T ss_pred             HHHHHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcccccCCHHHHHHHHHHcCCCHHHHH
Confidence            6899999999999999999864 468899999999999998  6789999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHhhhhcccccceeEEe
Q 008253           79 AAVSKNCRALISNALRKKHFHRETIRV  105 (572)
Q Consensus        79 aALSkNPRsLLl~AlRRRstyK~VI~V  105 (572)
                      .+++.+|+.|+.+..+|+.+....+.+
T Consensus       204 ~~~~~~~~~i~~~~~~~~~~~~~~~~~  230 (237)
T PRK00912        204 KALSYYPESIIKKNRNRKNYVIEGVEI  230 (237)
T ss_pred             HHHHHhHHHHHHhhccCCCcccccEEE
Confidence            999999999999998877666666655

>PRK03892 ribonuclease P protein component 3; Provisional

Probab=99.59  E-value=3.6e-15  Score=144.29  Aligned_cols=90  Identities=24%  Similarity=0.299  Sum_probs=86.1

Q ss_pred             HHHHHHcCcEEEEEeccccCC-hhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHH
Q 008253            2 IKAAIERGVYFELTYSDLILD-VQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAK   78 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrD-s~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAK   78 (572)
                      .|.|.+|||++||+++|+|+. +..|.++|+..+.++.+.|  +.++||||+|.+.++||+|+|++.|+.+|||+.++|+
T Consensus       123 AKlAa~n~VAIe~~L~plL~~~G~~Rar~L~~~r~~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~~iGme~~ea~  202 (216)
T PRK03892        123 ARMAAKRGVAIGFSLSPLLRANPYERANILRFMMKAWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGINIGMEIPQAK  202 (216)
T ss_pred             HHHHHHcCeEEEEecHHHHhhCchhHHHHHHHHHHHHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHHHhCCCHHHHH
Confidence            589999999999999999965 7899999999999999998  8999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHh
Q 008253           79 AAVSKNCRALISN   91 (572)
Q Consensus        79 aALSkNPRsLLl~   91 (572)
                      ++|+..|+.++.+
T Consensus       203 ~~Ls~~p~~i~~~  215 (216)
T PRK03892        203 ASLSFYPRIILKR  215 (216)
T ss_pred             HHHHHhHHHHhhc
Confidence            9999999998764

>PRK06361 hypothetical protein; Provisional

Probab=97.32  E-value=0.00093  Score=62.00  Aligned_cols=81  Identities=17%  Similarity=0.219  Sum_probs=65.5

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHH
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA   79 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKa   79 (572)
                      +++|.++|+++||++++....  ..+.       ++++.+  |-+++++|.|.++-++.....+..++.-.|++.++...
T Consensus       128 ~~~~~~~~~~lEin~~~~~~~--~~~~-------~l~~a~~~gi~vv~~SDaH~~~d~~~~~~~~~i~~~~gl~~~~v~~  198 (212)
T PRK06361        128 AELAAENGVFLEITARKGHSL--TNGH-------VARIAREAGAPLVINTDTHAPSDLITYEFARKVALGAGLTEKELEE  198 (212)
T ss_pred             HHHHHHcCeEEEEECCCCccc--chHH-------HHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            688999999999998543211  1122       333332  77899999999999999988899999999999999999


Q ss_pred             HHHHhHHHHHHh
Q 008253           80 AVSKNCRALISN   91 (572)
Q Consensus        80 ALSkNPRsLLl~   91 (572)
                      ++..||+.+|.+
T Consensus       199 ~~~~~~~~~~~~  210 (212)
T PRK06361        199 ALENNPKLLLKR  210 (212)
T ss_pred             HHHHhHHHHHHh
Confidence            999999988754

>PRK09248 putative hydrolase; Validated

Probab=94.63  E-value=0.053  Score=51.94  Aligned_cols=82  Identities=21%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHH
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA   79 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKa   79 (572)
                      ++.++++|+.+||+.+++......+   ....+.++++.+  |..++++|.|.++.++.....++.++.-+|++..+   
T Consensus       146 ~~~~~~~g~~lEvN~~~l~~~~~g~---~~~~~~~~~~~~~~g~~~~~gSDAH~~~~vg~~~~~~~~~~~~g~~~~~---  219 (246)
T PRK09248        146 VKAAKEHNVALEINNSSFGHSRKGS---EDNCRAIAALCKKAGVWVALGSDAHIAFDIGNFEEALKILDEVGFPEER---  219 (246)
T ss_pred             HHHHHHhCCEEEEECCCCccCCCCC---cChHHHHHHHHHHcCCeEEEeCCCCChhhhccHHHHHHHHHHcCCCHHH---
Confidence            5778899999999999874311000   111233333332  77899999999999999999999999999999996   


Q ss_pred             HHHHhHHHHH
Q 008253           80 AVSKNCRALI   89 (572)
Q Consensus        80 ALSkNPRsLL   89 (572)
                      .++..++.|+
T Consensus       220 ~~~~~~~~~~  229 (246)
T PRK09248        220 ILNVSPRRLL  229 (246)
T ss_pred             eeeCCHHHHH
Confidence            4444455555

>TIGR00010 hydrolase, TatD family

Probab=93.03  E-value=0.63  Score=42.98  Aligned_cols=81  Identities=16%  Similarity=0.263  Sum_probs=56.4

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCC--CCc----CHHHHHH----HHHHhC
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVT--ELR----GPYDVAN----LSSLLG   71 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~l--ELR----SPyDVIN----LasLFG   71 (572)
                      ++.++++|++|.++......+.       ...+.+++......|+++|.+....  ..|    .|..+..    ++.+.|
T Consensus       160 ~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~i~~~~~dril~~TD~p~~~~~~~~~~~~~p~~i~~~~~~~a~~~g  232 (252)
T TIGR00010       160 AKKLLDLGFYISISGIVTFKNA-------KSLREVVRKIPLERLLVETDSPYLAPVPYRGKRNEPAFVRYTVEAIAEIKG  232 (252)
T ss_pred             HHHHHHCCCeEeeceeEecCCc-------HHHHHHHHhCCHHHeEecccCCCCCCCCCCCCCCCChhHHHHHHHHHHHhC
Confidence            5677889999999975443322       2344555555567899999985421  223    4445443    466889


Q ss_pred             CCHHHHHHHHHHhHHHHH
Q 008253           72 ISMERAKAAVSKNCRALI   89 (572)
Q Consensus        72 LSeDeAKaALSkNPRsLL   89 (572)
                      ++.+++.+.++.||+.++
T Consensus       233 ~~~~~~~~~~~~N~~~~~  250 (252)
T TIGR00010       233 MDVEELAQITTKNAKRLF  250 (252)
T ss_pred             cCHHHHHHHHHHHHHHHh
Confidence            999999999999998775

Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.

>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon

Probab=90.78  E-value=1.4  Score=42.39  Aligned_cols=86  Identities=16%  Similarity=0.073  Sum_probs=61.0

Q ss_pred             HHHHHHcCcEEEEEeccccC---ChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCC--Cc---C-----HHHHHHHHH
Q 008253            2 IKAAIERGVYFELTYSDLIL---DVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTE--LR---G-----PYDVANLSS   68 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIr---Ds~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lE--LR---S-----PyDVINLas   68 (572)
                      ++.++++|++|.|+......   ..... .-...++.+++....-.|+|+|.+.....  .|   .     ++-+..++.
T Consensus       194 ~~~~~~~G~~i~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~d~ill~TD~p~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (293)
T cd00530         194 LLKIAALGAYLEFDGIGKDKIFGYPSDE-TRADAVKALIDEGYGDRLLLSHDVFRKSYLEKRYGGHGYDYILTRFIPRLR  272 (293)
T ss_pred             HHHHHhCCCEEEeCCCCcccccCCCCHH-HHHHHHHHHHHCCCcCCEEEeCCcCchhhhhhccCCCChHHHHHHHHHHHH
Confidence            56789999999999766442   11111 12335667777666779999999876322  23   2     555667788


Q ss_pred             HhCCCHHHHHHHHHHhHHHH
Q 008253           69 LLGISMERAKAAVSKNCRAL   88 (572)
Q Consensus        69 LFGLSeDeAKaALSkNPRsL   88 (572)
                      +.|++.++..+.++.||+.+
T Consensus       273 ~~g~~~e~i~~~~~~N~~~l  292 (293)
T cd00530         273 ERGVTEEQLDTILVENPARF  292 (293)
T ss_pred             HcCCCHHHHHHHHHHCHHHh
Confidence            99999999999999999765

PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.

>cd01310 TatD_DNAse TatD like proteins; E

Probab=89.80  E-value=2.7  Score=38.72  Aligned_cols=81  Identities=17%  Similarity=0.285  Sum_probs=52.7

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCc------CHH----HHHHHHHHhC
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELR------GPY----DVANLSSLLG   71 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELR------SPy----DVINLasLFG   71 (572)
                      ++.++++|++|.+.-.......    .   ..+.+++......|+++|.+......+      .|.    -+..|+...|
T Consensus       160 ~~~~~~~g~~~~~~~~~~~~~~----~---~~~~~~~~~~~dril~~TD~p~~~~~~~~~~~~~~~~~~~~~~~la~~~g  232 (251)
T cd01310         160 AKELLDLGFYISISGIVTFKNA----N---ELREVVKEIPLERLLLETDSPYLAPVPFRGKRNEPAYVKHVAEKIAELKG  232 (251)
T ss_pred             HHHHHHcCCEEEeeeeeccCCC----H---HHHHHHHhCChHHEEEcccCCCCCCCCCCCCCCCChhHHHHHHHHHHHHC
Confidence            4667889999988854322111    1   234455555556899999875432221      222    3444556799


Q ss_pred             CCHHHHHHHHHHhHHHHH
Q 008253           72 ISMERAKAAVSKNCRALI   89 (572)
Q Consensus        72 LSeDeAKaALSkNPRsLL   89 (572)
                      |+.++..+.+..||+.++
T Consensus       233 l~~e~~~~~~~~N~~~ll  250 (251)
T cd01310         233 ISVEEVAEVTTENAKRLF  250 (251)
T ss_pred             cCHHHHHHHHHHHHHHHh
Confidence            999999999999998765

coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.

>PRK09875 putative hydrolase; Provisional

Probab=89.66  E-value=3  Score=42.56  Aligned_cols=85  Identities=16%  Similarity=0.144  Sum_probs=62.3

Q ss_pred             HHHHHHcCcEEEEEe-cccc-CChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcC---------HHHHHHHHHHh
Q 008253            2 IKAAIERGVYFELTY-SDLI-LDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRG---------PYDVANLSSLL   70 (572)
Q Consensus         2 VRaAIERGI~FEI~Y-SPaI-rDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRS---------PyDVINLasLF   70 (572)
                      ++..+++|+++|++- +.-. .....|   +...+.|++..-...|+||+.......++.         ...++-.+.--
T Consensus       196 ~~~l~~~G~~l~fD~~g~~~~~pd~~r---~~~i~~L~~~Gy~drilLS~D~~~~~~~~~~gg~G~~~i~~~~ip~L~~~  272 (292)
T PRK09875        196 ILKMIDLGAYVQFDTIGKNSYYPDEKR---IAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQLRQS  272 (292)
T ss_pred             HHHHHHcCCEEEeccCCCcccCCHHHH---HHHHHHHHhcCCCCeEEEeCCCCCcccccccCCCChhHHHHHHHHHHHHc
Confidence            456789999999962 2111 112333   667777888888899999998876666555         45566666777


Q ss_pred             CCCHHHHHHHHHHhHHHHH
Q 008253           71 GISMERAKAAVSKNCRALI   89 (572)
Q Consensus        71 GLSeDeAKaALSkNPRsLL   89 (572)
                      |+++++.++.+..||+.++
T Consensus       273 Gvse~~I~~m~~~NP~r~~  291 (292)
T PRK09875        273 GFSQADVDVMLRENPSQFF  291 (292)
T ss_pred             CCCHHHHHHHHHHCHHHHh
Confidence            9999999999999998764

>PRK08392 hypothetical protein; Provisional

Probab=88.82  E-value=1.3  Score=42.02  Aligned_cols=66  Identities=18%  Similarity=0.099  Sum_probs=47.1

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHH
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMER   76 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDe   76 (572)
                      +++|+++|+.+||+-..   ....+ .++..++++     |.+|+|+|.|..+.++=.-.....++.=+|++.++
T Consensus       143 ~~~~~~~g~~lEiNt~~---~~p~~-~~l~~~~~~-----G~~~~igSDAH~~~~vg~~~~a~~~~~~~g~~~~~  208 (215)
T PRK08392        143 LDLAEAYGKAFEISSRY---RVPDL-EFIRECIKR-----GIKLTFASDAHRPEDVGNVSWSLKVFKKAGGKKED  208 (215)
T ss_pred             HHHHHHhCCEEEEeCCC---CCCCH-HHHHHHHHc-----CCEEEEeCCCCChHHCCcHHHHHHHHHHcCCCHHH
Confidence            67899999999999632   11111 233333322     78899999999998886666677788888988775

>PRK07945 hypothetical protein; Provisional

Probab=87.80  E-value=1.4  Score=45.34  Aligned_cols=70  Identities=16%  Similarity=0.093  Sum_probs=53.6

Q ss_pred             CHHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHH
Q 008253            1 MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAK   78 (572)
Q Consensus         1 MVRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAK   78 (572)
                      ++++|+++|+.+||+-++.-..         ....+++..+  |.+|+|+|.|..+-++-.-.....++.=.|+++++.-
T Consensus       250 i~~a~~e~g~~lEINt~~~r~~---------P~~~il~~a~e~G~~vtigSDAH~p~~v~~~~~~~~~a~~~g~~~~~i~  320 (335)
T PRK07945        250 VFAACREHGTAVEINSRPERRD---------PPTRLLRLALDAGCLFSIDTDAHAPGQLDWLGYGCERAEEAGVPADRIV  320 (335)
T ss_pred             HHHHHHHhCCEEEEeCCCCCCC---------ChHHHHHHHHHcCCeEEecCCCCChhhcchHHHHHHHHHHcCCCHHHcc
Confidence            3688999999999998765332         2233444443  7789999999999999877778999999999887643


Q ss_pred             H
Q 008253           79 A   79 (572)
Q Consensus        79 a   79 (572)
                      .
T Consensus       321 n  321 (335)
T PRK07945        321 N  321 (335)
T ss_pred             c
Confidence            3

>PRK07328 histidinol-phosphatase; Provisional

Probab=87.16  E-value=0.54  Score=45.96  Aligned_cols=67  Identities=22%  Similarity=0.241  Sum_probs=41.6

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCc-CHHHHHHHHHHhCC
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELR-GPYDVANLSSLLGI   72 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELR-SPyDVINLasLFGL   72 (572)
                      +++|+++|+.+||+-+.+-+....    ......+++..+  |.+|+|+|.|..+-++- .-.....|+.-+|+
T Consensus       183 l~~~~~~g~~lEiNt~~~r~~~~~----~yp~~~il~~~~~~g~~itigSDAH~~~~vg~~~~~a~~~l~~~G~  252 (269)
T PRK07328        183 LDVIAAAGLALEVNTAGLRKPVGE----IYPSPALLRACRERGIPVVLGSDAHRPEEVGFGFAEALALLKEVGY  252 (269)
T ss_pred             HHHHHHcCCEEEEEchhhcCCCCC----CCCCHHHHHHHHHcCCCEEEeCCCCCHHHHhccHHHHHHHHHHcCC
Confidence            688999999999999765432110    111223444443  66799999999877764 23334444444554

>PRK07329 hypothetical protein; Provisional

Probab=85.20  E-value=1.2  Score=43.25  Aligned_cols=69  Identities=19%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             CHHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--C-CcEEEccCCCCCCCC-cCHHHHHHHHHHhCCCH
Q 008253            1 MIKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--G-KNLILSSGASSVTEL-RGPYDVANLSSLLGISM   74 (572)
Q Consensus         1 MVRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--G-KNIIISSGA~S~lEL-RSPyDVINLasLFGLSe   74 (572)
                      ++++|+++|+.+||+-+.+.+..... .    ...+++..+  | ..|+|+|-|-++-++ +.-.....++.-+|++.
T Consensus       170 i~~~~~~~~~~lEiNt~~~~~~~~~~-~----~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a~~~l~~~g~~~  242 (246)
T PRK07329        170 IFAKMIDNDLAFELNTKSMYLYGNEG-L----YRYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDAQKLLKEHGIKE  242 (246)
T ss_pred             HHHHHHHcCCeEEEECcccccCCCCc-c----hHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHcCCce
Confidence            36889999999999998875432111 1    123344443  3 458999999999887 55566677777777753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	572
1v77_A	212	PH1877P, hypothetical protein PH1877; RNAse P prot	6e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A* Length = 212

 Score = 99.0 bits (246), Expect = 6e-24
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 1   MIKAAIERGVYFELTYSDLILDVQLRR-QMISNAKLLVDWTR--GKNLILSSGASSVTEL 57
           + K  +++ V    +   L+      R  ++                  L+S A    ++
Sbjct: 116 LAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDV 175

Query: 58  RGPYDVANLSSLLGISMERAKAAVSKNCRALISNA 92
           R P D+ +L  ++G+ + +AKA++S     ++   
Sbjct: 176 RYPRDLISLGVVIGMEIPQAKASISMYPEIILKRL 210

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 79/598 (13%), Positives = 158/598 (26%), Gaps = 174/598 (29%)

Query: 13  ELTYSDLILDVQLRRQMISN--AKLLVDWTRGKNLILSSGASSVTE-LRGPYDVANLSSL 69
           +  Y D++         + N   K + D  +    ILS     +   +     V+    L
Sbjct: 15  QYQYKDILSV--FEDAFVDNFDCKDVQDMPKS---ILSK--EEIDHIIMSKDAVSGTLRL 67

Query: 70  LGISMERAKAAVSKNCRALISNALRKKHFHRETIRVEPISSGEQFDSKEPWSGDWLKWDP 129
               + + +  V K     +   LR  +                          +L   P
Sbjct: 68  FWTLLSKQEEMVQK----FVEEVLRINY-------------------------KFL-MSP 97

Query: 130 ISSGEGDLQLDDMAESFTASTKVSKTVKTINFASVIDSIPSHSFRVNDLIYGTQAVSHSR 189
           I       + +    S      + +  +  N   V      +  R+   +   QA+   R
Sbjct: 98  I-------KTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLRQALLELR 148

Query: 190 D-----------SGKSNLFVAGANEKSV---ASNGV----SENRRRLDILHETDQNSLHN 231
                       SGK+ + +       V       +     +N    + + E  Q     
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK---- 204

Query: 232 APLNNQSSSCENNRESGSPSAFPETIINTEDIESQPTIIEEDDVAEKSFTAKETER---- 287
             L  Q      +R   S +      +    I+++   +           +K  E     
Sbjct: 205 --LLYQIDPNWTSRSDHSSN----IKLRIHSIQAELRRL---------LKSKPYENCLLV 249

Query: 288 -DDQNTKHGISSHAVDLVLSKEIVK-----CPAL--TGEIELGAACNVDNKLEGDTLPDT 339
             +              V + +        C  L  T          V + L   T   T
Sbjct: 250 LLN--------------VQNAKAWNAFNLSCKILLTTRFK------QVTDFLSAAT---T 286

Query: 340 FHSSACHNEESKTAESSGVDFDSQNVAMGEVGMKIDIKDREDASVALDNVSLTDNVIERE 399
            H S  H+  + T +               +   +D + ++     L       ++I  E
Sbjct: 287 THISLDHHSMTLTPDEV----------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-E 335

Query: 400 HFRELVDVVSGQNLLQGSHDEMDNKNGTSFANHETEVTMEELRDGERLREPGDGRLLA-- 457
             R+ +      N    + D++     +S    E      E R  +          L+  
Sbjct: 336 SIRDGLATW--DNWKHVNCDKLTTIIESSLNVLEPA----EYR--KMFDR------LSVF 381

Query: 458 -DKISIQESCTEMIVKDDSSVANHEACEEVMVEKQKNGVQFREPGERLITGQNLFLDSSK 516
                I      +I  D            V+ +  K  +  ++P E  I+  +++L+   
Sbjct: 382 PPSAHIPTILLSLIWFDVIK----SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK- 436

Query: 517 DFSVKENSSDANQEGLDDAKMEEQI--HGEADSETDRPTLVPCVSGKYYFLKSLFYQY 572
                        +  ++  +   I  H       D   L+P    +Y      FY +
Sbjct: 437 ------------VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY------FYSH 476

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	572
1v77_A	212	PH1877P, hypothetical protein PH1877; RNAse P prot	99.63
2wje_A	247	CPS4B, tyrosine-protein phosphatase CPSB; capsule	91.6
1m65_A	245	Hypothetical protein YCDX; structural genomics, be	91.23
2y1h_A	272	Putative deoxyribonuclease tatdn3; hydrolase; 2.50	91.13
2vc7_A	314	Aryldialkylphosphatase; phosphotriesterase, promis	85.18
2yxo_A	267	Histidinol phosphatase; metal-dependent, hydrolase	83.75
3qy7_A	262	Tyrosine-protein phosphatase YWQE; TIM barrel, pol	82.76
1xwy_A	264	DNAse TATD, deoxyribonuclease TATD; TIM barrael, z	82.29
3k2g_A	364	Resiniferatoxin-binding, phosphotriesterase- relat	81.96
2ob3_A	330	Parathion hydrolase; metalloenzyme, TIM barrel, ne	81.89

>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*

Probab=99.63  E-value=3.8e-16  Score=143.99  Aligned_cols=89  Identities=18%  Similarity=0.254  Sum_probs=85.5

Q ss_pred             HHHHHHcCcEEEEEeccccCC-hhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHH
Q 008253            2 IKAAIERGVYFELTYSDLILD-VQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAK   78 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrD-s~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAK   78 (572)
                      +++|.++||+|||+|+++++. ...|++++.|++.+++++|  |.+|||||+|.+++++|+|.|+++|+..|||++++++
T Consensus       117 a~~A~e~gv~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~~ivisSDAh~~~~v~~~~~~~~l~~~~G~~~e~~~  196 (212)
T 1v77_A          117 AKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDVRYPRDLISLGVVIGMEIPQAK  196 (212)
T ss_dssp             HHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSSGGGCCCHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHCCeEEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCCCEEEeCCCCChhhcCCHHHHHHHHHHcCCCHHHHH
Confidence            789999999999999998876 5689999999999999999  9999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHH
Q 008253           79 AAVSKNCRALIS   90 (572)
Q Consensus        79 aALSkNPRsLLl   90 (572)
                      .+|+.+|+.++.
T Consensus       197 ~~l~~~~~~i~~  208 (212)
T 1v77_A          197 ASISMYPEIILK  208 (212)
T ss_dssp             HTTTHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999999999987

>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A

Probab=91.60  E-value=1.1  Score=41.35  Aligned_cols=83  Identities=12%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             HHHHHHcCcEEEEEeccc--cCC-h---hHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCC-cCHHHHHHHH-HHhCCC
Q 008253            2 IKAAIERGVYFELTYSDL--ILD-V---QLRRQMISNAKLLVDWTRGKNLILSSGASSVTEL-RGPYDVANLS-SLLGIS   73 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPa--IrD-s---~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lEL-RSPyDVINLa-sLFGLS   73 (572)
                      ++.++++|+.+||+++.+  ... .   ...+.+...+   .  -.|..+++.|.|-.+.++ ..-..+..++ .-+|  
T Consensus       154 l~~l~~~G~~lEiN~~s~~~~~~~g~~~~~~~~~~~~~---~--~~gl~~~~GSDaH~~~~~~~~~~~a~~~l~~~~G--  226 (247)
T 2wje_A          154 VRELIDMGCYTQVNSSHVLKPKLFGERYKFMKKRAQYF---L--EQDLVHVIASDMHNLDGRPPHMAEAYDLVTQKYG--  226 (247)
T ss_dssp             HHHHHHTTCEEEEEHHHHSCCCSSCCSCHHHHHHHHHH---H--HTTCCSEEECCBCCSSSSCCCHHHHHHHHHHHHC--
T ss_pred             HHHHHHCCCEEEEecHhhHhcCCCCCcChHHHHHHHHH---H--HCCCeEEEEeCCCCCcccChhHHHHHHHHHHHhC--
Confidence            678899999999999877  431 1   1112222221   1  268899999999998766 3345566665 4577  


Q ss_pred             HHHHHHHHHHhHHHHHHh
Q 008253           74 MERAKAAVSKNCRALISN   91 (572)
Q Consensus        74 eDeAKaALSkNPRsLLl~   91 (572)
                      .+.+...+..||+.||.+
T Consensus       227 ~~~~~~l~~~n~~~i~~~  244 (247)
T 2wje_A          227 EAKAQELFIDNPRKIVMD  244 (247)
T ss_dssp             HHHHHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            566777677899999865

>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A

Probab=91.23  E-value=0.34  Score=43.54  Aligned_cols=85  Identities=18%  Similarity=0.185  Sum_probs=57.4

Q ss_pred             HHHHHHcCcEEEEEeccccCC----hhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHH
Q 008253            2 IKAAIERGVYFELTYSDLILD----VQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRGPYDVANLSSLLGISMERA   77 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrD----s~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeA   77 (572)
                      ++.+++.|+.+||+++...+.    ....+.++.-++.     .|-.++++|.|..+.++........++.-+|++..+.
T Consensus       145 ~~~~~~~g~~iEvn~~~~~~~~~g~~~~~~~~~~~~~~-----~g~~~~~gSDaH~~~~~g~~~~~~~~~~~~g~~~~~i  219 (245)
T 1m65_A          145 AEAAAKHQVALEINNSSFLHSRKGSEDNCREVAAAVRD-----AGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPERI  219 (245)
T ss_dssp             HHHHHHHTCEEEEETTC----------CHHHHHHHHHH-----HTCCEEEECCBSSGGGTTCCHHHHHHHHHTTCCGGGB
T ss_pred             HHHHHHcCCEEEEECCCCcccCCCCCCchHHHHHHHHH-----cCCEEEEECCCCChHHHhhHHHHHHHHHHCCCCeEEE
Confidence            567788999999999987521    1112222222222     2778999999999999999999999999999999884


Q ss_pred             HHHHHHhHHHHHHhhhhc
Q 008253           78 KAAVSKNCRALISNALRK   95 (572)
Q Consensus        78 KaALSkNPRsLLl~AlRR   95 (572)
                      .   ..+|..++ .++++
T Consensus       220 ~---~~~~~~l~-~~l~~  233 (245)
T 1m65_A          220 L---NVSPRRLL-NFLES  233 (245)
T ss_dssp             G---GGCHHHHH-HHHHH
T ss_pred             E---ECCHHHHH-HHHHH
Confidence            4   33565544 34443

>2y1h_A Putative deoxyribonuclease tatdn3; hydrolase; 2.50A {Homo sapiens}

Probab=91.13  E-value=1.1  Score=40.95  Aligned_cols=81  Identities=17%  Similarity=0.295  Sum_probs=57.0

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCcC----HH---H-HHHHHHHhCCC
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTELRG----PY---D-VANLSSLLGIS   73 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELRS----Py---D-VINLasLFGLS   73 (572)
                      ++.++++|++|.|.-. +...   +     .++.+++......|+|.|.+....-.|+    |.   . +..|+.+.|++
T Consensus       177 ~~~~~~~g~~i~~~g~-~~~~---~-----~~~~~~~~~~~drll~eTD~P~~~p~~g~~~~p~~l~~~~~~la~~~g~~  247 (272)
T 2y1h_A          177 AMEGVRAGYFFSIPPS-IIRS---G-----QKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYIAQVKGIS  247 (272)
T ss_dssp             HHHHHHTTCEEEECGG-GGTC---H-----HHHHHHHHSCGGGEEECCCTTSSCSSTTSCCCGGGHHHHHHHHHHHHTSC
T ss_pred             HHHHHHCCCEEEECCc-ccCc---H-----HHHHHHHhCCHHHEEEecCCCCCCCCCCCcCcHHHHHHHHHHHHHHHCcC
Confidence            5678899999998732 2221   1     4677777777788999999974322222    32   2 33466779999


Q ss_pred             HHHHHHHHHHhHHHHHHh
Q 008253           74 MERAKAAVSKNCRALISN   91 (572)
Q Consensus        74 eDeAKaALSkNPRsLLl~   91 (572)
                      .++..+.+..||+.++.-
T Consensus       248 ~e~~~~~~~~N~~~l~~~  265 (272)
T 2y1h_A          248 VEEVIEVTTQNALKLFPK  265 (272)
T ss_dssp             HHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999888743

>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A*

Probab=85.18  E-value=3.1  Score=38.47  Aligned_cols=87  Identities=15%  Similarity=0.139  Sum_probs=55.6

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCC-------CCc-------C----HHHH
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVT-------ELR-------G----PYDV   63 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~l-------ELR-------S----PyDV   63 (572)
                      ++.++++|.+|.|+....+... ........+..++.....-.|+|+|-+....       .++       +    ...+
T Consensus       209 ~~~~~~~G~~i~~~~~~~~~~~-~~~~~~~~i~~~~~~g~~drilleTD~~~~~~~~~~~p~~~~~g~~~~~~~~~~~~~  287 (314)
T 2vc7_A          209 IKKIADKGSFIGLDRYGLDLFL-PVDKRNETTLRLIKDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDT  287 (314)
T ss_dssp             HHHHHHTTCEEEECCTTCTTTS-CHHHHHHHHHHHHHTTCTTTEEECCCCBSSBCCGGGCTTSHHHHCTTCSTTHHHHTH
T ss_pred             HHHHHHcCCEEEEeCCCcccCC-CHHHHHHHHHHHHHcCCCCeEEEcCCccccccccccchhhhhcCCCCcCHHHHHHHH
Confidence            5678899999999964332111 1122233345555544578999999995321       221       1    1144


Q ss_pred             HHHHHHhCCCHHHHHHHHHHhHHHHH
Q 008253           64 ANLSSLLGISMERAKAAVSKNCRALI   89 (572)
Q Consensus        64 INLasLFGLSeDeAKaALSkNPRsLL   89 (572)
                      +......|++.++..+.++.||+.++
T Consensus       288 ~~~l~~~g~~~e~~~~~~~~N~~rlf  313 (314)
T 2vc7_A          288 IPFLKRNGVNEEVIATIFKENPKKFF  313 (314)
T ss_dssp             HHHHHHTTCCHHHHHHHHTHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHCHHHHh
Confidence            45456789999999999999998764

>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A

Probab=83.75  E-value=2.2  Score=38.59  Aligned_cols=68  Identities=22%  Similarity=0.292  Sum_probs=46.0

Q ss_pred             HHHHHHcCcEEEEEeccccCCh---hHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCCCc-CHHHHHHHHHHhCCCH
Q 008253            2 IKAAIERGVYFELTYSDLILDV---QLRRQMISNAKLLVDWTRGKNLILSSGASSVTELR-GPYDVANLSSLLGISM   74 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs---~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lELR-SPyDVINLasLFGLSe   74 (572)
                      ++.++++|+.+||+.+.+....   ...+.++.-++.     .|-.++++|.|..+.++. ....+..++.-+|++.
T Consensus       178 l~~~~~~g~~iEvn~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~gSDaH~~~~~~~~~~~a~~~l~~~g~~~  249 (267)
T 2yxo_A          178 LRAVAEAGLFLDVNTAGLRRPAKEVYPAPALLRRARE-----LGIGLVLGSDAHRPEEVGFAFPEVQALLAGLGFRE  249 (267)
T ss_dssp             HHHHHHHTCEEEEEGGGGGSTTCSCBSCHHHHHHHHH-----HTCCEEEECCBSSGGGTTTTHHHHHHHHHHHTCCE
T ss_pred             HHHHHHcCCEEEEEchHhcCCCCCCCCCHHHHHHHHH-----cCCCEEEecCCCCHHHHHhhHHHHHHHHHHcCCCE
Confidence            5678899999999988865431   112333332222     278899999999988776 6666666666666654

>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A

Probab=82.76  E-value=6.1  Score=37.68  Aligned_cols=84  Identities=18%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCCCC-CcCHHHHHHHHH-HhCCCHHHHHH
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSVTE-LRGPYDVANLSS-LLGISMERAKA   79 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~lE-LRSPyDVINLas-LFGLSeDeAKa   79 (572)
                      ++.+++.|+.+||+.+++......  ..-..++.+++  .|-.++|.|.|-++.. -..-.++..++. -+|.  +.|+.
T Consensus       150 l~~l~~~G~~iEiN~~s~~g~~g~--~~~~~~~~~~~--~gl~~~igSDaH~~~~r~~~~~~a~~~l~~~~G~--~~a~~  223 (262)
T 3qy7_A          150 LYHLVEKGAASQITSGSLAGIFGK--QLKAFSLRLVE--ANLIHFVASDAHNVKTRNFHTQEALYVLEKEFGS--ELPYM  223 (262)
T ss_dssp             HHHHHHTTCEEEEEHHHHHTTTCH--HHHHHHHHHHH--TTCCCEEECCBCSSSSSCCCHHHHHHHHHHHHCS--HHHHH
T ss_pred             HHHHHHCCCEEEEECCccCcccch--HHHHHHHHHHh--CCCeEEEEccCCCCCCCCchHHHHHHHHHHHhCH--HHHHH
Confidence            578899999999999988642111  11112233332  6888899999988764 333444455554 4775  55666


Q ss_pred             HHHHhHHHHHHhh
Q 008253           80 AVSKNCRALISNA   92 (572)
Q Consensus        80 ALSkNPRsLLl~A   92 (572)
                       +-.||+.||.+.
T Consensus       224 -~~~n~~~il~~~  235 (262)
T 3qy7_A          224 -LTENAELLLRNQ  235 (262)
T ss_dssp             -HHHHHHHHHTTC
T ss_pred             -HHHHHHHHHCCC
Confidence             678999999765

>1xwy_A DNAse TATD, deoxyribonuclease TATD; TIM barrael, zinc ION, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.1.9.12

Probab=82.29  E-value=8.3  Score=34.77  Aligned_cols=82  Identities=17%  Similarity=0.312  Sum_probs=54.6

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCC--CCC----CcC----H----HHHHHHH
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASS--VTE----LRG----P----YDVANLS   67 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S--~lE----LRS----P----yDVINLa   67 (572)
                      ++.++++|++|.|.  ..+.+ ..|.   ..++.+++......|++.|-+.-  +..    .|+    |    +-+..++
T Consensus       165 ~~~~~~~g~yi~~~--g~~~~-~~~~---~~l~~~~~~~~~drll~eTD~P~~~~~~~~~~~~g~~n~p~~~~~~~~~~a  238 (264)
T 1xwy_A          165 MQACVAHGIYIGIT--GWVCD-ERRG---LELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIA  238 (264)
T ss_dssp             HHHHHHTTCEEEEC--GGGGC-TTTS---HHHHHHGGGSCGGGEEECCCTTSCCCTTCTTCCCSSCCCGGGHHHHHHHHH
T ss_pred             HHHHHHCCeEEEEC--ccccC-CcCc---HHHHHHHHhCCHHHEEEecCCCCcCccccccccCCCCCchHHHHHHHHHHH
Confidence            56788999999988  33320 0011   13456666666678999999853  221    222    2    3334556


Q ss_pred             HHhCCCHHHHHHHHHHhHHHHH
Q 008253           68 SLLGISMERAKAAVSKNCRALI   89 (572)
Q Consensus        68 sLFGLSeDeAKaALSkNPRsLL   89 (572)
                      .+.|++.++..+.+..|++.++
T Consensus       239 ~~~g~~~e~~~~~~~~Na~rl~  260 (264)
T 1xwy_A          239 HWRGEDAAWLAATTDANVKTLF  260 (264)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHCcCHHHHHHHHHHHHHHHh
Confidence            7889999999999999998775

>3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2}

Probab=81.96  E-value=3.8  Score=40.95  Aligned_cols=89  Identities=13%  Similarity=0.098  Sum_probs=60.0

Q ss_pred             HHHHHHcCcEEEEEeccc---cCC-------hhHHHHHHHHHHHHHHHhCCCcEEEccCCCCC--CCCc---C----HHH
Q 008253            2 IKAAIERGVYFELTYSDL---ILD-------VQLRRQMISNAKLLVDWTRGKNLILSSGASSV--TELR---G----PYD   62 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPa---IrD-------s~aRRn~ISNArqLIRaTRGKNIIISSGA~S~--lELR---S----PyD   62 (572)
                      .+.++++|.+++|.-.-.   ..+       ...|.   ...+.+++......|+|||.+...  +.-|   +    +..
T Consensus       249 a~~~l~~G~~I~f~g~gt~~~f~~~~~~~~~d~~ra---~~l~~lv~~gp~drilleTD~p~~~~~~~~gg~~~~~l~~~  325 (364)
T 3k2g_A          249 QATLAQRGAFLEFDMIGMDFFYADQGVQCPSDDEVA---RAILGLADHGYLDRILLSHDVFVKMMLTRYGGNGYAFVTKH  325 (364)
T ss_dssp             HHHHHHHTCEEEECCTTCCCEETTTTEECCCHHHHH---HHHHHHHHTTCGGGEEECCCCCSGGGSGGGTSCTTSHHHHH
T ss_pred             HHHHHhCCcEEEecCCcccccccccccccccHHHHH---HHHHHHHHhCCcccEEEeCCCCCCCCCCCCCCCCcchHHHH
Confidence            467889999999984311   111       11232   245666666667899999999642  2112   1    334


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHhHHHHHHhhh
Q 008253           63 VANLSSLLGISMERAKAAVSKNCRALISNAL   93 (572)
Q Consensus        63 VINLasLFGLSeDeAKaALSkNPRsLLl~Al   93 (572)
                      ++.++.+.|++.++..+.++.||+.++.-..
T Consensus       326 ~~~~l~~~Gis~eei~~~~~~Np~rlf~l~~  356 (364)
T 3k2g_A          326 FLPRLRRHGLDDAALETLMVTNPRRVFDASI  356 (364)
T ss_dssp             HHHHHHHTTCCHHHHHHHHTHHHHHHHCTTS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhCCCc
Confidence            5556678899999999999999999886543

>2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ...

Probab=81.89  E-value=5.3  Score=38.54  Aligned_cols=86  Identities=19%  Similarity=0.142  Sum_probs=55.6

Q ss_pred             HHHHHHcCcEEEEEe-ccccC--------------Ch-hHHHHHHHHHHHHHHHhCCCcEEEccCCCC-CCCC---cC--
Q 008253            2 IKAAIERGVYFELTY-SDLIL--------------DV-QLRRQMISNAKLLVDWTRGKNLILSSGASS-VTEL---RG--   59 (572)
Q Consensus         2 VRaAIERGI~FEI~Y-SPaIr--------------Ds-~aRRn~ISNArqLIRaTRGKNIIISSGA~S-~lEL---RS--   59 (572)
                      .+.++++|+++.|.. +....              .+ ..|   ...++.+++......|+|+|.+.. ....   |+  
T Consensus       206 a~~~~~~G~~i~~~~~G~~tf~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~p~drilleTD~p~~l~~~~~~~g~~  282 (330)
T 2ob3_A          206 LTALAARGYLIGLDHIPYSAIGLEDNASASALLGIRSWQTR---ALLIKALIDQGYMKQILVSNDWTFGFSSYVTNIMDV  282 (330)
T ss_dssp             HHHHHHTTCEEEECCTTCCCTTCTTCHHHHHHHCSSCHHHH---HHHHHHHHHTTCGGGEEECCCCCSEECSSSTTHHHH
T ss_pred             HHHHHhCCCEEEeCCCccccccccccccccccccCCCHHHH---HHHHHHHHHhCCCCeEEEeCCCCCCcccccccCCCc
Confidence            567899999999995 32222              11 122   223556666656689999999975 2211   11  


Q ss_pred             --------H-HHHHH-HHHH--hCCCHHHHHHHHHHhHHHHHH
Q 008253           60 --------P-YDVAN-LSSL--LGISMERAKAAVSKNCRALIS   90 (572)
Q Consensus        60 --------P-yDVIN-LasL--FGLSeDeAKaALSkNPRsLLl   90 (572)
                              + +-+.. ++.+  .|++.++..++++.||+.++.
T Consensus       283 ~~~n~pn~~~~~~~~~ia~l~~~G~~~eev~~~~t~N~~rlf~  325 (330)
T 2ob3_A          283 MDRVNPDGMAFIPLRVIPFLREKGVPQETLAGITVTNPARFLS  325 (330)
T ss_dssp             HHHHCTTGGGHHHHTHHHHHHHTTCCHHHHHHHHTHHHHHHHS
T ss_pred             ccccCCCCcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence                    1 11233 2345  899999999999999988874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	572
d1v77a_	202	c.6.3.2 (A:) Ribonuclease P protein component 3, R	1e-19

>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 202

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: RNase P subunit p30
domain: Ribonuclease P protein component 3, Rnp3
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 84.9 bits (210), Expect = 1e-19
 Identities = 16/92 (17%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 1   MIKAAIERGVYFELTYSDLILDVQLRR-QMISNAKLLVDWTRGKN--LILSSGASSVTEL 57
           + K  +++ V    +   L+      R  ++                  L+S A    ++
Sbjct: 110 LAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDV 169

Query: 58  RGPYDVANLSSLLGISMERAKAAVSKNCRALI 89
           R P D+ +L  ++G+ + +AKA++S     ++
Sbjct: 170 RYPRDLISLGVVIGMEIPQAKASISMYPEIIL 201

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	572
d1v77a_	202	Ribonuclease P protein component 3, Rnp3 {Pyrococc	99.78
d1bf6a_	291	Phosphotriesterase homology protein {Escherichia c	91.3
d1m65a_	244	Hypothetical protein YcdX {Escherichia coli [TaxId	88.91

>d1v77a_ c.6.3.2 (A:) Ribonuclease P protein component 3, Rnp3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: RNase P subunit p30
domain: Ribonuclease P protein component 3, Rnp3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1.3e-19  Score=168.02  Aligned_cols=90  Identities=18%  Similarity=0.262  Sum_probs=84.3

Q ss_pred             CHHHHHHcCcEEEEEeccccCC-hhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHH
Q 008253            1 MIKAAIERGVYFELTYSDLILD-VQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERA   77 (572)
Q Consensus         1 MVRaAIERGI~FEI~YSPaIrD-s~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeA   77 (572)
                      ++++|++|||+|||+|+|+|++ +..|+++++|++.+++++|  |.++||||||.++++||+|+|+++|+.+|||++++|
T Consensus       110 lak~A~e~gV~lEI~~s~ll~~~~~~R~~~i~~~~~~l~l~kky~~piVisSdAh~~~dlr~p~dv~~L~~~~Gl~~~~a  189 (202)
T d1v77a_         110 LAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQEKWDVRYPRDLISLGVVIGMEIPQA  189 (202)
T ss_dssp             HHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSSGGGCCCHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHCCeEEEEEchhhhccCcccHHHHHHHHHHHHHHHHhcCCcEEEecCCCChhhcCCHHHHHHHHHHcCCCHHHH
Confidence            4789999999999999999976 5678899999999999999  556999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHH
Q 008253           78 KAAVSKNCRALIS   90 (572)
Q Consensus        78 KaALSkNPRsLLl   90 (572)
                      ++||+.+|+.+|.
T Consensus       190 k~als~~P~~ilk  202 (202)
T d1v77a_         190 KASISMYPEIILK  202 (202)
T ss_dssp             HHTTTHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999873

>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Phosphotriesterase-like
domain: Phosphotriesterase homology protein
species: Escherichia coli [TaxId: 562]

Probab=91.30  E-value=0.35  Score=42.61  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=61.4

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhCCCcEEEccCCCCC--CCCcC----H---HHHHHHHHHhCC
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTRGKNLILSSGASSV--TELRG----P---YDVANLSSLLGI   72 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTRGKNIIISSGA~S~--lELRS----P---yDVINLasLFGL   72 (572)
                      .+.++++|.++.++....+.... -......++.+++......|++++.+...  ...|+    |   ..++..+...|+
T Consensus       195 ~~~~~~~G~~i~~~g~~~~~~~~-~~~~~~~~~~lv~~~p~drilleTD~p~~~p~~~~g~~~~~~~~~~~~~~l~~~g~  273 (291)
T d1bf6a_         195 ILKMIDLGAYVQFDTIGKNSYYP-DEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQLRQSGF  273 (291)
T ss_dssp             HHHHHHTTCEEEECCTTCTTTSC-HHHHHHHHHHHHHTTCGGGEEECCCCCSGGGSGGGTSCCTTHHHHTHHHHHHHTTC
T ss_pred             HHHHHhcCeeEEecccccccCCc-HHHhHHHHHHHHHhCCchhEEEecCCCCccccccCCCCCchhHHHHHHHHHHHcCC
Confidence            56789999999998666553321 12333567888888888999999998743  33232    2   334444445799


Q ss_pred             CHHHHHHHHHHhHHHHH
Q 008253           73 SMERAKAAVSKNCRALI   89 (572)
Q Consensus        73 SeDeAKaALSkNPRsLL   89 (572)
                      +.++..+.+.+||+.+.
T Consensus       274 s~e~i~~i~~~Np~rlf  290 (291)
T d1bf6a_         274 SQADVDVMLRENPSQFF  290 (291)
T ss_dssp             CHHHHHHHHTHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHc
Confidence            99999999999998763

>d1m65a_ c.6.3.1 (A:) Hypothetical protein YcdX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: PHP domain-like
family: PHP domain
domain: Hypothetical protein YcdX
species: Escherichia coli [TaxId: 562]

Probab=88.91  E-value=0.32  Score=39.56  Aligned_cols=87  Identities=16%  Similarity=0.160  Sum_probs=59.9

Q ss_pred             HHHHHHcCcEEEEEeccccCChhHHHHHHHHHHHHHHHhC--CCcEEEccCCCCCCCCcCHHHHHHHHHHhCCCHHHHHH
Q 008253            2 IKAAIERGVYFELTYSDLILDVQLRRQMISNAKLLVDWTR--GKNLILSSGASSVTELRGPYDVANLSSLLGISMERAKA   79 (572)
Q Consensus         2 VRaAIERGI~FEI~YSPaIrDs~aRRn~ISNArqLIRaTR--GKNIIISSGA~S~lELRSPyDVINLasLFGLSeDeAKa   79 (572)
                      +..+.++++.+|+.-.......   .........++++++  |..+|++|.|..+.++....-++.++.-+|++.++.  
T Consensus       144 ~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~l~~a~~~g~~~v~~SDaH~~~~~g~~~~~~~~~~~~g~~~~~v--  218 (244)
T d1m65a_         144 AEAAAKHQVALEINNSSFLHSR---KGSEDNCREVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPERI--  218 (244)
T ss_dssp             HHHHHHHTCEEEEETTC-------------CHHHHHHHHHHHTCCEEEECCBSSGGGTTCCHHHHHHHHHTTCCGGGB--
T ss_pred             HHHHHhhhhhhhhcccccccCC---ccccchHHHHHHHHHHCCCcEEEECCcCCHhhhhhHHHHHHHHHHcCCCHHHe--
Confidence            3567889999999877776432   121222234455554  889999999999999999999999999999998764  


Q ss_pred             HHHHhHHHHHHhhhh
Q 008253           80 AVSKNCRALISNALR   94 (572)
Q Consensus        80 ALSkNPRsLLl~AlR   94 (572)
                       ++.+|+.++.-...
T Consensus       219 -~~~~~~~~~~~l~~  232 (244)
T d1m65a_         219 -LNVSPRRLLNFLES  232 (244)
T ss_dssp             -GGGCHHHHHHHHHH
T ss_pred             -eeCCHHHHHHHHHH
Confidence             55678888764433